chr1 3000097 3000123 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 3004206 3004270 trf 4 16.5 4 80 6 78 75 23 1 0 0.90 ACAA chr1 3006789 3006841 trf 11 4.8 10 82 17 68 84 0 15 0 0.62 GAAAAAAAAA chr1 3006790 3006839 trf 6 8.7 6 84 10 68 85 0 14 0 0.59 AAAAGA chr1 3009350 3009407 trf 2 29.0 2 96 3 107 0 0 49 50 1.00 TG chr1 3011924 3011970 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 TA chr1 3013988 3014049 trf 2 30.5 2 93 0 104 50 3 0 45 1.17 AT chr1 3031446 3031487 trf 8 5.4 8 80 11 50 46 14 36 2 1.58 GAGCAAGA chr1 3044516 3044626 trf 3 36.7 3 98 0 211 0 34 0 65 0.93 CTT chr1 3045468 3045497 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 3048890 3049056 trf 4 41.8 4 85 1 226 45 0 24 29 1.57 TAAG chr1 3050072 3050175 trf 3 34.3 3 100 0 206 0 33 0 66 0.92 TTC chr1 3050074 3050542 trf 6 78.0 6 96 2 438 0 51 0 48 1.00 CTTCTC chr1 3050173 3050210 trf 3 12.3 3 100 0 74 0 67 0 32 0.91 CTC chr1 3050737 3050773 trf 4 8.8 4 93 6 63 25 2 0 72 0.98 TATT chr1 3050954 3051003 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 3051366 3051538 trf 7 24.7 7 95 3 303 0 0 26 73 0.83 TTTTTGG chr1 3051710 3051797 trf 4 21.8 4 90 0 138 0 44 0 55 0.99 TTCC chr1 3062123 3062168 trf 4 11.2 4 100 0 90 51 24 0 24 1.49 ATAC chr1 3063323 3063370 trf 4 11.8 4 100 0 94 25 0 0 74 0.82 ATTT chr1 3064240 3064422 trf 4 46.2 4 73 5 111 25 20 5 47 1.72 TCTA chr1 3064443 3064486 trf 4 10.8 4 94 0 77 25 0 20 53 1.46 TATG chr1 3072403 3072430 trf 10 2.7 10 100 0 54 51 40 7 0 1.30 ACACACAGAC chr1 3072403 3072444 trf 8 4.8 9 80 20 52 51 41 7 0 1.30 ACACACAGC chr1 3072797 3072842 trf 5 8.8 5 88 11 65 2 0 15 82 0.77 TTTTG chr1 3075430 3075458 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 3078668 3078700 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 3079494 3079546 trf 3 17.3 3 100 0 104 67 0 32 0 0.91 AAG chr1 3083163 3083311 trf 2 75.0 2 93 2 255 0 50 0 49 1.00 TC chr1 3083905 3083931 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 3094366 3094436 trf 2 35.0 2 91 0 113 0 54 0 45 0.99 TC chr1 3096903 3096965 trf 8 7.5 8 87 7 70 58 0 41 0 0.98 AAAGAGAG chr1 3096913 3096962 trf 2 24.5 2 95 0 89 53 0 46 0 1.00 AG chr1 3096962 3097032 trf 4 17.5 4 100 0 140 51 0 48 0 1.00 AAGG chr1 3098466 3098526 trf 5 11.8 5 87 3 84 1 0 18 80 0.80 TTTTG chr1 3103337 3103440 trf 5 20.6 5 92 6 129 81 4 13 0 0.84 AAAGA chr1 3103382 3103466 trf 5 16.8 5 91 4 98 79 14 5 0 0.90 AAAAC chr1 3104713 3104860 trf 6 24.7 6 91 6 210 80 0 19 0 0.72 AAAAGA chr1 3116454 3116513 trf 2 29.5 2 100 0 118 50 0 0 49 1.00 AT chr1 3122019 3122080 trf 10 6.5 10 78 14 67 39 39 9 11 1.75 CCACATACAG chr1 3122157 3122191 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 3125340 3125414 trf 3 23.7 3 97 2 121 67 32 0 0 0.91 ACA chr1 3130289 3130342 trf 2 26.5 2 96 0 97 0 0 49 50 1.00 GT chr1 3134118 3134162 trf 3 14.7 3 100 0 88 0 0 31 68 0.90 TTG chr1 3134945 3135013 trf 2 34.0 2 93 0 118 52 0 47 0 1.00 GA chr1 3163694 3163753 trf 5 11.8 5 87 7 75 3 0 11 84 0.73 TTTTG chr1 3168530 3168571 trf 1 41.0 1 100 0 82 100 0 0 0 0.00 A chr1 3169224 3169259 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 3170535 3170571 trf 5 7.0 5 90 3 54 75 22 2 0 0.94 CAAAA chr1 3176277 3176306 trf 12 2.3 13 94 5 51 79 0 20 0 0.74 GAAAGGAAAAAAA chr1 3176399 3176435 trf 2 18.0 2 88 0 54 5 0 44 50 1.25 TG chr1 3182045 3182113 trf 2 34.5 2 94 2 120 50 1 0 48 1.10 TA chr1 3184124 3184152 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 3188550 3188631 trf 7 11.7 7 96 1 128 3 14 13 67 1.35 GCTTTTT chr1 3189479 3189527 trf 3 16.0 3 100 0 96 33 0 0 66 0.92 TTA chr1 3190774 3190843 trf 2 34.5 2 91 0 111 49 46 4 0 1.21 CA chr1 3192947 3193050 trf 2 51.5 2 86 0 143 5 0 46 47 1.26 TG chr1 3193518 3193555 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 3193628 3193688 trf 2 30.0 2 93 0 102 3 0 50 46 1.18 TG chr1 3194181 3194230 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 3194303 3194334 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 3198130 3198157 trf 7 3.9 7 100 0 54 88 11 0 0 0.50 AAAAAAC chr1 3201334 3201360 trf 11 2.4 11 100 0 52 15 0 0 84 0.62 TTTTATTTTTA chr1 3207635 3207666 trf 4 8.0 4 92 7 55 0 0 22 77 0.77 GTTT chr1 3207638 3207678 trf 12 3.3 13 86 13 59 0 0 22 77 0.77 TTTTGTTTGTTTG chr1 3209527 3209594 trf 6 10.8 6 82 17 68 77 17 1 2 0.97 AAAAAC chr1 3210819 3210845 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 3211807 3212195 trf 4 100.0 4 76 13 366 28 25 0 45 1.59 TATC chr1 3219275 3219309 trf 3 11.3 3 100 0 68 35 0 0 64 0.94 ATT chr1 3221838 3221929 trf 5 18.6 5 89 3 141 1 36 2 60 1.16 TTCTC chr1 3227832 3227878 trf 2 23.0 2 95 0 83 52 47 0 0 1.00 AC chr1 3229230 3229279 trf 5 10.6 5 86 8 61 83 16 0 0 0.64 AACAA chr1 3230660 3230701 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 3230700 3230736 trf 7 5.1 7 100 0 72 86 13 0 0 0.58 AAACAAA chr1 3236692 3236717 trf 12 2.1 12 100 0 50 8 0 76 16 1.02 GTGGGTGGGGGA chr1 3236783 3236860 trf 2 38.5 2 94 0 136 48 0 51 0 1.00 AG chr1 3236869 3236915 trf 5 9.4 5 80 4 58 73 19 2 4 1.10 AAACA chr1 3256056 3256125 trf 2 34.5 2 85 0 93 49 43 7 0 1.30 AC chr1 3266660 3266707 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 3266706 3266746 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 3268367 3268433 trf 10 6.6 10 91 0 96 46 48 0 4 1.22 ACACACACAC chr1 3268367 3268433 trf 6 11.0 6 90 0 96 46 48 0 4 1.22 ACACAC chr1 3268367 3268433 trf 4 16.5 4 87 0 96 46 48 0 4 1.22 ACAC chr1 3268847 3268890 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 3284441 3284484 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 3284512 3284537 trf 4 6.2 4 100 0 50 48 0 24 28 1.52 TGAA chr1 3287257 3287444 trf 5 37.6 5 98 1 223 0 50 0 49 1.00 TCTCC chr1 3287444 3287470 trf 6 4.3 6 100 0 52 0 80 0 19 0.71 TCCCCC chr1 3287507 3287584 trf 4 19.2 4 94 0 127 0 29 0 70 0.88 CTTT chr1 3287581 3287698 trf 4 28.8 4 92 5 182 0 49 0 50 1.00 TTCC chr1 3287696 3287727 trf 2 15.5 2 93 0 53 0 51 0 48 1.00 TC chr1 3294670 3294769 trf 2 50.5 2 81 4 103 2 44 2 51 1.24 TC chr1 3298907 3298981 trf 2 37.0 2 94 0 130 1 1 48 48 1.18 GT chr1 3300499 3300539 trf 4 10.0 4 100 0 80 0 25 0 75 0.81 TTCT chr1 3300536 3300595 trf 2 29.5 2 100 0 118 0 49 0 50 1.00 TC chr1 3308940 3308970 trf 5 6.0 5 100 0 60 80 0 0 20 0.72 AAAAT chr1 3309283 3309341 trf 4 15.2 4 92 7 95 0 24 0 75 0.80 TCTT chr1 3309338 3309364 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 3317571 3317629 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 TA chr1 3317628 3317665 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 3317883 3317935 trf 2 26.0 2 96 0 95 1 0 48 50 1.12 GT chr1 3319817 3319865 trf 9 5.9 8 84 15 55 0 0 25 75 0.81 TTTTGTTG chr1 3325301 3325355 trf 2 27.0 2 92 0 90 3 0 48 48 1.19 TG chr1 3325715 3325744 trf 2 14.5 2 100 0 58 0 51 0 48 1.00 CT chr1 3327144 3327194 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 3327242 3327293 trf 4 12.8 4 95 0 93 25 25 0 49 1.51 TATC chr1 3329443 3329492 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 3339979 3340012 trf 4 8.2 4 100 0 66 0 0 24 75 0.80 TGTT chr1 3340201 3340267 trf 5 13.8 5 81 12 61 0 0 19 80 0.72 TTTTG chr1 3340202 3340266 trf 4 15.8 4 84 9 69 0 0 20 79 0.73 TTTG chr1 3355371 3355415 trf 10 4.4 10 85 0 52 6 0 43 50 1.29 ATGTGTGTGT chr1 3355372 3355410 trf 2 19.0 2 88 0 58 2 0 44 52 1.14 TG chr1 3358018 3358053 trf 12 2.9 12 91 0 52 8 0 40 51 1.33 TGTATGTGTGTA chr1 3358054 3358079 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TCTG chr1 3360113 3360160 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 3361292 3361348 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 CT chr1 3361347 3361393 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 3377885 3377925 trf 4 10.0 4 89 10 64 77 22 0 0 0.77 CAAA chr1 3378130 3378215 trf 3 28.7 3 83 2 109 0 69 0 30 0.89 CTC chr1 3390190 3390216 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 TC chr1 3390215 3390298 trf 2 41.5 2 91 0 121 50 44 0 4 1.23 CA chr1 3397568 3397607 trf 7 5.7 7 87 6 53 30 20 46 2 1.64 GCAGGCA chr1 3401805 3401867 trf 2 31.0 2 96 0 115 51 48 0 0 1.00 CA chr1 3401808 3401881 trf 12 6.1 12 93 0 101 57 42 0 0 0.98 ACACACACACAA chr1 3406432 3406531 trf 2 52.5 2 80 15 113 0 49 1 49 1.07 TC chr1 3408394 3408527 trf 6 22.8 6 93 6 197 66 0 33 0 0.92 AAAGAG chr1 3408506 3408561 trf 4 13.0 4 98 1 83 70 0 29 0 0.87 GAAA chr1 3408701 3408745 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 3411427 3411465 trf 2 19.0 2 88 0 58 50 5 0 44 1.24 AT chr1 3412635 3412762 trf 4 33.0 4 91 6 120 67 0 32 0 0.91 GAAA chr1 3412975 3413020 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 3413021 3413083 trf 2 31.0 2 100 0 124 0 50 0 50 1.00 TC chr1 3413142 3413187 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 3417190 3417268 trf 4 19.8 4 93 2 131 24 0 75 0 0.80 GAGG chr1 3417265 3417328 trf 2 31.5 2 100 0 126 49 0 50 0 1.00 GA chr1 3422932 3423024 trf 2 46.5 2 73 6 53 46 10 3 39 1.55 TA chr1 3422933 3422980 trf 12 3.9 12 97 0 85 51 12 0 36 1.40 ATATACATATAC chr1 3426978 3427043 trf 6 11.2 6 73 18 57 18 20 1 60 1.45 CTTTAT chr1 3428595 3428634 trf 8 4.9 8 80 0 51 5 28 10 56 1.54 TCTCTGTT chr1 3440034 3440079 trf 4 11.8 4 90 9 76 0 26 22 51 1.49 TCTG chr1 3440058 3440113 trf 6 8.8 6 88 7 83 0 32 16 50 1.45 TCTGTC chr1 3440114 3440178 trf 2 32.0 2 93 0 110 3 0 46 50 1.17 TG chr1 3440671 3440710 trf 2 19.0 2 89 5 60 46 0 5 48 1.24 TA chr1 3445502 3445535 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 3449016 3449079 trf 8 7.9 8 76 0 54 42 4 6 46 1.50 ATATATAT chr1 3449016 3449079 trf 6 10.5 6 73 0 54 42 4 6 46 1.50 ATATAT chr1 3449027 3449078 trf 12 4.6 12 86 11 65 41 3 5 49 1.45 TATATATGCATA chr1 3449027 3449076 trf 10 4.7 10 82 9 62 40 4 6 48 1.47 TATATATGTA chr1 3452501 3452620 trf 5 23.4 5 94 3 150 0 0 24 75 0.80 TGTTT chr1 3459216 3459272 trf 4 14.0 4 100 0 112 25 25 0 50 1.50 ATCT chr1 3460666 3460730 trf 2 32.0 2 93 0 101 1 3 50 45 1.27 TG chr1 3482517 3482576 trf 12 4.9 12 79 8 66 57 0 40 1 1.09 GAAGGAAAGAAG chr1 3483579 3483608 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 3487958 3487988 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 CT chr1 3487987 3488020 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 3488792 3488982 trf 4 47.5 4 96 0 137 0 38 0 61 0.96 TTCT chr1 3491886 3491929 trf 2 21.5 2 90 0 68 46 0 48 4 1.22 AG chr1 3494929 3494955 trf 4 6.5 4 100 0 52 26 26 0 46 1.53 CATT chr1 3496602 3496632 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 3503881 3503920 trf 12 3.2 12 85 0 51 7 0 41 51 1.31 GTGTGTATGTGT chr1 3506790 3506928 trf 6 23.0 6 86 0 168 27 0 72 0 0.85 GAGGAG chr1 3508860 3508903 trf 1 43.0 1 85 0 59 0 2 4 93 0.43 T chr1 3509242 3509290 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 3518995 3519036 trf 3 13.7 3 100 0 82 34 0 0 65 0.93 TAT chr1 3523066 3523101 trf 3 11.7 3 93 0 61 62 2 0 34 1.10 TAA chr1 3524857 3524902 trf 2 22.5 2 95 0 81 48 48 0 2 1.13 CA chr1 3527360 3527400 trf 8 5.0 8 84 0 53 22 40 7 30 1.81 CATGCATC chr1 3529806 3529853 trf 4 11.8 4 100 0 94 76 0 0 23 0.78 AAAT chr1 3530403 3530446 trf 3 14.3 3 100 0 86 32 0 0 67 0.91 TAT chr1 3530961 3530999 trf 5 7.6 5 93 0 67 78 0 21 0 0.74 AAAAG chr1 3539056 3539104 trf 2 24.0 2 95 0 87 2 50 0 47 1.12 CT chr1 3540985 3541034 trf 7 6.7 7 81 9 62 2 0 18 79 0.83 TTTTTGT chr1 3555543 3555594 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 3555753 3555848 trf 6 15.8 6 82 0 100 1 38 9 50 1.42 TCTCTC chr1 3555753 3555848 trf 4 23.8 4 84 0 100 1 38 9 50 1.42 TCTC chr1 3558541 3558580 trf 3 12.7 3 84 15 53 66 0 0 33 0.92 AAT chr1 3559180 3559217 trf 2 18.5 2 100 0 74 0 48 0 51 1.00 TC chr1 3559216 3559265 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 3560910 3560952 trf 12 3.4 12 78 15 50 80 19 0 0 0.70 CAAAAAACAAAA chr1 3560910 3560940 trf 12 2.6 11 90 10 51 80 20 0 0 0.72 CAAAAAACAAA chr1 3562062 3562123 trf 4 15.2 4 89 0 95 45 24 0 29 1.53 CATA chr1 3562237 3562277 trf 3 13.3 3 87 10 55 67 27 2 2 1.16 ACA chr1 3567149 3567245 trf 2 50.5 2 79 13 105 1 47 2 48 1.20 CT chr1 3570889 3570942 trf 5 11.0 5 92 8 92 41 16 0 41 1.49 ATCAT chr1 3571331 3571395 trf 2 32.0 2 93 0 110 3 0 46 50 1.17 GT chr1 3574430 3574484 trf 2 27.0 2 92 0 90 51 46 0 1 1.11 CA chr1 3574540 3574647 trf 6 17.5 6 80 7 54 1 38 10 49 1.48 TCTGTC chr1 3574562 3574648 trf 10 8.8 10 85 10 79 1 43 6 48 1.37 TCTGTCTCTC chr1 3574594 3574648 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 3575667 3575713 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 3576074 3576107 trf 4 8.2 4 100 0 66 51 24 24 0 1.48 AGAC chr1 3576108 3576167 trf 4 15.0 4 92 3 102 49 1 25 23 1.60 ATAG chr1 3576504 3576531 trf 3 9.0 3 100 0 54 33 0 33 33 1.58 TAG chr1 3576568 3576674 trf 3 35.0 3 86 1 149 60 0 39 0 0.97 AGA chr1 3583196 3583263 trf 2 33.5 2 96 0 125 52 47 0 0 1.00 AC chr1 3585103 3585164 trf 8 7.9 8 85 7 72 49 8 0 42 1.32 CATATATA chr1 3585104 3585164 trf 12 5.2 12 86 8 88 50 6 0 43 1.28 ATATATACATAT chr1 3585709 3585763 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 AC chr1 3588410 3588450 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 3589170 3589326 trf 2 79.0 2 85 2 181 42 0 56 0 1.04 GA chr1 3589856 3589901 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 3593992 3594043 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 3595513 3595558 trf 4 11.8 4 86 9 67 0 2 20 77 0.87 TTTG chr1 3599535 3599578 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 3605314 3605362 trf 2 24.0 2 95 0 87 0 0 47 52 1.00 GT chr1 3610002 3610046 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 3611704 3611815 trf 7 16.3 7 77 5 93 26 18 6 48 1.72 ATTCTAT chr1 3629098 3629142 trf 4 11.0 4 95 0 70 25 4 0 70 1.06 ATTT chr1 3638661 3638694 trf 4 8.2 4 100 0 66 0 0 24 75 0.80 TGTT chr1 3647257 3647308 trf 1 51.0 1 80 0 57 0 1 7 90 0.53 T chr1 3647258 3647314 trf 10 5.5 10 81 10 60 0 1 10 87 0.62 TTTTTTTTTG chr1 3649525 3649577 trf 2 26.5 2 96 3 97 50 50 0 0 1.00 AC chr1 3650738 3650783 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 3652161 3652195 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 3654899 3654925 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 3655004 3655039 trf 4 8.8 4 93 0 61 74 2 0 22 0.95 ATAA chr1 3658216 3658263 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 3659686 3659733 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 3660734 3660759 trf 5 5.0 5 100 0 50 0 0 20 80 0.72 TGTTT chr1 3669419 3669450 trf 4 7.8 4 92 0 53 77 19 0 3 0.90 AAAC chr1 3671102 3671135 trf 9 3.7 9 84 15 50 9 57 33 0 1.30 GCCGCCCGA chr1 3672825 3672851 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 3673064 3673126 trf 4 15.5 4 100 0 124 0 50 0 50 1.00 CTTC chr1 3673124 3673174 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 CT chr1 3675183 3675229 trf 2 23.0 2 95 0 83 50 47 2 0 1.13 AC chr1 3679089 3679131 trf 7 5.7 7 88 5 57 0 0 19 80 0.70 TTTTTTG chr1 3679092 3679129 trf 11 3.3 11 88 7 56 0 0 21 78 0.75 TTTGTTTTTTG chr1 3679099 3679129 trf 4 7.8 4 92 7 53 0 0 20 80 0.72 TTTG chr1 3684181 3684237 trf 2 28.0 2 92 0 94 1 0 46 51 1.11 TG chr1 3686328 3686383 trf 2 28.0 2 81 3 58 0 43 5 50 1.25 TC chr1 3686500 3686538 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 TA chr1 3686537 3686595 trf 2 29.0 2 96 0 107 51 0 48 0 1.00 AG chr1 3709524 3709553 trf 6 4.8 6 100 0 58 86 13 0 0 0.58 AAAAAC chr1 3709555 3709763 trf 5 41.2 5 91 3 265 32 0 66 0 0.95 GGAGA chr1 3709761 3709811 trf 5 10.0 5 86 0 64 72 0 28 0 0.86 AGAAA chr1 3712174 3712202 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 3712202 3712260 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 3717335 3717377 trf 4 10.0 4 90 10 50 0 0 21 78 0.75 GTTT chr1 3717338 3717379 trf 5 9.0 5 94 5 54 0 0 21 78 0.76 TTTTG chr1 3719600 3719644 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 AG chr1 3724509 3724536 trf 7 3.9 7 100 0 54 88 11 0 0 0.50 AAAAAAC chr1 3724785 3724835 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 CT chr1 3724834 3724869 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 3724938 3725065 trf 8 15.9 8 73 12 73 51 12 30 4 1.60 ACAGAGAG chr1 3725032 3725073 trf 6 7.2 6 81 10 50 51 14 31 2 1.56 AGAGAC chr1 3726869 3726908 trf 4 9.8 4 100 0 78 0 48 0 51 1.00 CTTC chr1 3730565 3730609 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 3730849 3730893 trf 4 11.0 4 90 0 52 2 6 22 68 1.25 TTTG chr1 3744406 3744464 trf 4 14.5 4 100 0 116 48 0 51 0 1.00 GGAA chr1 3745049 3745103 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 AG chr1 3747084 3747185 trf 5 20.0 5 93 2 157 75 23 0 0 0.87 AAAAC chr1 3758403 3758450 trf 5 9.4 5 100 0 94 80 19 0 0 0.70 AAACA chr1 3763438 3763554 trf 2 58.0 2 84 0 124 50 39 6 4 1.47 AC chr1 3765307 3765504 trf 6 32.8 6 97 0 376 17 16 0 65 1.27 TCTTAT chr1 3774611 3774658 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 3774659 3774805 trf 10 14.8 10 77 7 111 50 6 40 2 1.41 ACAGAGAGAG chr1 3774698 3774805 trf 2 54.0 2 79 1 99 51 5 42 0 1.32 AG chr1 3779895 3779991 trf 4 24.0 4 97 0 183 0 26 0 73 0.83 CTTT chr1 3782184 3782222 trf 2 19.0 2 94 0 67 50 47 0 2 1.15 CA chr1 3785256 3785292 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 3788587 3788665 trf 8 9.8 8 98 0 120 0 56 0 43 0.99 CTCTCTCC chr1 3790168 3790223 trf 2 27.5 2 90 0 83 3 1 43 50 1.30 TG chr1 3801809 3801835 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 3804882 3804927 trf 5 9.4 5 85 9 58 0 24 0 75 0.80 TTTTC chr1 3805150 3805175 trf 6 4.2 6 100 0 50 0 52 16 32 1.44 CTGCCT chr1 3808148 3808215 trf 6 10.8 6 75 20 50 2 1 19 76 1.00 GTTTTT chr1 3808368 3808406 trf 5 7.6 5 91 8 60 0 0 18 81 0.69 TTTGT chr1 3810419 3810478 trf 5 11.4 5 81 13 57 3 3 13 79 0.98 TTGTT chr1 3810579 3810610 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 3820488 3820553 trf 5 13.0 5 100 0 130 60 0 40 0 0.97 GAAGA chr1 3822705 3822756 trf 1 51.0 1 100 0 102 0 0 0 100 0.00 T chr1 3834279 3834356 trf 4 19.2 4 91 0 127 53 23 0 23 1.46 ATAC chr1 3835804 3835831 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 3856576 3856602 trf 4 6.5 4 100 0 52 0 26 23 50 1.50 CTTG chr1 3861699 3861732 trf 12 2.5 13 85 14 50 78 18 0 3 0.87 AACAAAAAACAAC chr1 3869316 3869394 trf 2 39.0 2 89 0 120 1 3 48 46 1.28 TG chr1 3869394 3869449 trf 6 9.2 6 87 0 56 50 9 40 0 1.34 GAGAGA chr1 3869394 3869449 trf 4 13.8 4 80 0 56 50 9 40 0 1.34 GAGA chr1 3869460 3869486 trf 5 5.2 5 100 0 52 80 19 0 0 0.71 AAAAC chr1 3882655 3882680 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 3886742 3886796 trf 4 13.5 4 96 0 99 48 0 25 25 1.52 TAGA chr1 3886793 3886868 trf 4 18.8 4 88 0 105 49 24 2 24 1.63 ATAC chr1 3902854 3902889 trf 4 8.8 4 93 0 61 74 22 2 0 0.95 AAAC chr1 3905156 3905187 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 3916202 3916255 trf 6 8.8 6 95 0 88 30 0 69 0 0.88 GAGAGG chr1 3917622 3917711 trf 2 45.0 2 81 2 108 4 3 41 50 1.39 TG chr1 3917710 3917748 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 3919744 3919795 trf 5 10.2 5 100 0 102 19 0 0 80 0.71 TATTT chr1 3924660 3924742 trf 2 45.0 2 77 18 90 43 0 53 2 1.13 AG chr1 3924673 3924743 trf 10 6.6 10 96 3 104 42 0 57 0 0.99 GAGAGGAGAG chr1 3925692 3925897 trf 5 42.4 5 84 7 210 64 0 35 0 0.94 AAGAG chr1 3925854 3925912 trf 12 4.5 12 79 14 62 75 0 24 0 0.80 AGAAAAAAGAAA chr1 3928190 3928294 trf 4 26.2 4 96 1 192 48 0 25 25 1.58 GATA chr1 3929284 3929312 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 3940797 3940841 trf 1 44.0 1 81 0 52 90 0 9 0 0.44 A chr1 3955245 3955279 trf 1 34.0 1 100 0 68 100 0 0 0 0.00 A chr1 3965962 3965989 trf 12 2.2 12 100 0 54 59 18 7 14 1.58 AACAACAATATG chr1 3967296 3967353 trf 2 29.0 2 92 3 89 3 0 47 49 1.18 GT chr1 3968928 3968981 trf 2 26.5 2 92 0 79 50 43 5 0 1.25 AC chr1 3986497 3986523 trf 10 2.6 10 100 0 52 0 42 30 26 1.56 GGCTCCCTGT chr1 3987077 3987130 trf 5 10.6 5 100 0 106 18 0 0 81 0.70 TTTAT chr1 3994445 3994566 trf 10 11.5 11 78 12 80 2 38 9 48 1.50 TCTCTCTCTGC chr1 3994445 3994560 trf 6 19.2 6 82 2 88 2 38 9 49 1.49 TCTCTC chr1 3994445 3994560 trf 4 28.8 4 75 2 88 2 38 9 49 1.49 TCTC chr1 4000310 4000383 trf 5 14.6 5 97 0 137 1 0 36 61 1.05 TTTGG chr1 4000388 4000453 trf 2 32.5 2 90 0 103 4 0 44 50 1.22 TG chr1 4000874 4000921 trf 2 23.5 2 100 0 94 51 0 0 48 1.00 AT chr1 4006350 4006384 trf 12 2.9 12 91 4 52 82 0 2 14 0.79 AAATAAAAAAAT chr1 4008029 4008078 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 4010735 4010767 trf 12 2.7 12 95 0 55 0 15 0 84 0.63 TTTTTTTTTCCC chr1 4014538 4014565 trf 5 5.4 5 100 0 54 81 18 0 0 0.69 AAAAC chr1 4017049 4017101 trf 1 52.0 1 76 0 50 1 0 9 88 0.59 T chr1 4017062 4017098 trf 7 5.4 7 90 9 58 0 0 11 88 0.50 TTTGTTT chr1 4029007 4029064 trf 11 4.9 11 74 8 51 31 0 64 3 1.10 AGGAGGGGAGG chr1 4029007 4029064 trf 3 19.7 3 85 7 73 31 0 64 3 1.10 AGG chr1 4030999 4031031 trf 8 3.8 9 88 12 50 90 9 0 0 0.45 AACAAAAAA chr1 4043384 4043433 trf 5 10.0 5 84 4 64 77 0 22 0 0.77 AAGAA chr1 4043437 4043521 trf 2 44.0 2 90 9 140 47 0 52 0 1.00 GA chr1 4047619 4047692 trf 1 73.0 1 77 0 74 89 10 0 0 0.50 A chr1 4048768 4048794 trf 4 6.5 4 100 0 52 53 0 0 46 1.00 AATT chr1 4054414 4054598 trf 6 30.7 6 92 0 242 0 57 0 42 0.98 TCTCTC chr1 4055340 4055386 trf 3 16.0 3 91 8 78 32 0 0 67 0.91 ATT chr1 4056451 4056505 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 CT chr1 4056504 4056556 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 4063152 4063182 trf 3 10.0 3 92 0 51 33 30 0 36 1.58 CAT chr1 4065609 4065693 trf 5 17.0 5 82 11 77 78 20 1 0 0.82 AAAAC chr1 4069661 4069693 trf 4 8.0 4 92 0 55 46 0 0 53 1.00 ATTA chr1 4070444 4070485 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 4085815 4085852 trf 9 4.1 9 89 10 58 0 21 2 75 0.92 TCTTTCTTT chr1 4086251 4086286 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 4088141 4088172 trf 4 7.8 4 92 0 53 0 3 25 70 1.02 GTTT chr1 4090396 4090442 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 4095017 4095062 trf 2 22.5 2 95 0 81 2 0 48 48 1.13 GT chr1 4100798 4100832 trf 5 6.8 5 100 0 68 20 0 0 79 0.73 ATTTT chr1 4102431 4102460 trf 12 2.3 13 94 5 51 10 17 0 72 1.11 TCTTTAATTTCTT chr1 4119110 4119165 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 4119170 4119246 trf 4 19.0 4 100 0 152 75 0 25 0 0.81 AAGA chr1 4120801 4120852 trf 2 25.5 2 95 0 93 0 0 47 52 1.00 TG chr1 4123560 4123607 trf 4 11.5 4 86 8 60 76 21 2 0 0.89 CAAA chr1 4123787 4123923 trf 10 13.7 10 90 0 184 0 55 0 44 0.99 TCTCTCTCTC chr1 4123787 4123923 trf 4 34.2 4 93 1 184 0 55 0 44 0.99 TCTC chr1 4128728 4128779 trf 5 9.6 5 83 12 66 0 1 17 80 0.81 TTTTG chr1 4129885 4129916 trf 4 7.8 4 100 0 62 0 0 25 74 0.82 GTTT chr1 4141604 4141644 trf 12 2.8 15 78 21 50 17 5 5 72 1.21 TTTTTCTTTATTAGA chr1 4142497 4142576 trf 3 26.3 3 100 0 158 32 34 32 0 1.58 CAG chr1 4144307 4144335 trf 3 9.3 3 100 0 56 0 0 32 67 0.91 TTG chr1 4144503 4144553 trf 5 10.4 5 85 14 70 0 0 20 80 0.72 TTGTT chr1 4151328 4151407 trf 2 40.0 2 94 2 142 48 0 51 0 1.00 AG chr1 4154495 4154534 trf 12 3.2 12 82 7 51 46 7 2 43 1.46 TTAATTCATAAA chr1 4170981 4171035 trf 2 27.0 2 84 0 72 3 50 0 46 1.19 TC chr1 4171037 4171162 trf 6 20.8 6 88 0 151 8 0 40 51 1.31 TGTGTG chr1 4171043 4171158 trf 12 9.6 12 91 0 176 7 0 40 51 1.31 TGTGTGTATGTG chr1 4171404 4171477 trf 7 9.7 7 73 16 58 17 2 0 79 0.85 TTATTTT chr1 4174258 4174351 trf 4 22.2 4 84 8 60 0 38 0 61 0.96 TTCT chr1 4174263 4174298 trf 2 17.5 2 87 0 52 0 42 0 57 0.99 TC chr1 4175016 4175136 trf 2 60.0 2 84 0 159 0 47 1 50 1.10 CT chr1 4175135 4175172 trf 2 18.5 2 94 0 65 2 0 45 51 1.15 TG chr1 4186928 4186961 trf 2 16.5 2 93 0 57 3 0 45 51 1.16 TG chr1 4195195 4195231 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 4196266 4196341 trf 4 18.5 4 75 8 62 2 44 1 52 1.23 TTCC chr1 4198060 4198117 trf 2 28.5 2 96 0 105 1 0 47 50 1.11 TG chr1 4212295 4212336 trf 4 10.8 4 89 10 68 78 21 0 0 0.76 AAAC chr1 4215532 4215571 trf 4 9.8 4 100 0 78 51 23 0 25 1.49 ATAC chr1 4219381 4219445 trf 5 12.8 5 93 0 110 0 20 0 79 0.73 CTTTT chr1 4223412 4223437 trf 12 2.1 12 100 0 50 24 8 24 44 1.80 TGTATGCATGTA chr1 4228083 4228127 trf 4 11.0 4 100 0 88 75 0 25 0 0.81 AAGA chr1 4228124 4228250 trf 4 31.8 4 97 1 164 42 0 57 0 0.99 AGAG chr1 4229394 4229443 trf 2 24.5 2 95 0 89 0 0 46 53 1.00 TG chr1 4236155 4236180 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 4247939 4247970 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 4256428 4258863 trf 6 404.8 6 88 6 2270 0 22 34 42 1.60 CTGTGT chr1 4261750 4261794 trf 4 11.0 4 100 0 88 75 0 25 0 0.81 AAAG chr1 4264418 4264466 trf 12 3.8 13 86 10 64 77 20 2 0 0.88 AACAAACAAAACA chr1 4264418 4264457 trf 9 4.4 9 81 18 55 76 23 0 0 0.78 AACAAACAA chr1 4264418 4264467 trf 4 11.8 4 83 12 55 75 22 2 0 0.90 AACA chr1 4275433 4275483 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 4281847 4281926 trf 2 39.5 2 87 5 115 50 45 2 1 1.23 AC chr1 4284909 4284960 trf 4 13.0 4 83 4 68 68 0 31 0 0.90 AAAG chr1 4284920 4285012 trf 8 11.5 8 88 4 105 58 0 41 0 0.98 GAAGAAAG chr1 4284941 4285016 trf 12 6.2 12 95 0 114 56 0 44 0 0.99 AAGAAAGGAAGG chr1 4285027 4285117 trf 5 18.0 5 100 0 180 40 0 60 0 0.97 GGAAG chr1 4285116 4285188 trf 9 8.6 9 79 11 82 66 0 33 0 0.92 GAAAAAAGG chr1 4285122 4285258 trf 9 16.8 8 77 16 50 54 0 44 0 1.05 AGGGAAAG chr1 4285181 4285292 trf 9 12.2 9 74 18 97 44 0 54 0 1.06 GGGAAAAGG chr1 4285248 4285300 trf 10 5.6 10 82 17 76 46 0 53 0 1.00 GAAAGGGGAA chr1 4285311 4285438 trf 5 25.6 5 98 1 247 59 0 40 0 0.97 GGAAA chr1 4285807 4285856 trf 2 24.5 2 95 0 89 48 48 2 0 1.12 CA chr1 4287726 4287771 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 4289296 4289374 trf 4 19.8 4 97 2 149 50 0 24 25 1.50 ATAG chr1 4290242 4290304 trf 4 15.5 4 100 0 124 50 0 25 24 1.50 GATA chr1 4290306 4290347 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 4298286 4298319 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 4298513 4298580 trf 12 5.5 12 89 1 62 34 0 65 0 0.93 GGAAGGAAGGAG chr1 4298513 4298582 trf 8 8.4 8 87 4 66 34 0 65 0 0.93 GGAAGGAG chr1 4298524 4298565 trf 4 10.2 4 100 0 82 26 0 73 0 0.84 AGGG chr1 4298599 4298697 trf 4 25.5 4 89 8 159 72 0 27 0 0.85 AGAA chr1 4304530 4304564 trf 4 8.5 4 100 0 68 0 0 23 76 0.79 TTTG chr1 4305066 4305101 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 4318863 4318925 trf 5 12.4 5 98 0 115 1 0 37 61 1.06 TTTGG chr1 4322237 4322271 trf 2 17.0 2 93 0 59 0 0 47 52 1.00 GT chr1 4328079 4328141 trf 1 62.0 1 80 0 70 90 9 0 0 0.46 A chr1 4329261 4329291 trf 5 6.0 5 92 0 51 3 0 16 80 0.85 TGTTT chr1 4329604 4329794 trf 5 38.2 5 78 11 185 38 5 53 2 1.35 GGAAG chr1 4329795 4329995 trf 5 40.6 5 91 3 118 43 0 56 0 1.03 AGAGG chr1 4329882 4329996 trf 5 23.0 5 93 1 176 56 0 42 0 1.05 GAGAA chr1 4343407 4343506 trf 4 25.8 4 89 8 161 48 1 26 24 1.58 AGAT chr1 4361288 4361330 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 4361645 4361680 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 4367242 4367283 trf 4 10.2 4 86 0 55 2 43 0 53 1.13 CTTC chr1 4367607 4367650 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 4370678 4370750 trf 4 18.0 4 92 0 117 52 1 20 25 1.54 TAGA chr1 4380691 4380797 trf 2 50.5 2 81 9 122 48 9 0 42 1.35 AT chr1 4382355 4382384 trf 12 2.3 13 94 5 51 72 0 17 10 1.11 AAGAAAGAAATTA chr1 4383094 4383124 trf 5 5.8 5 92 7 51 83 0 0 16 0.65 AAAAT chr1 4388233 4388272 trf 5 7.8 5 100 0 78 0 0 17 82 0.68 TTTTG chr1 4395535 4395609 trf 5 15.2 5 88 5 98 75 0 4 20 0.96 AATAA chr1 4401056 4401091 trf 10 3.5 10 88 0 52 0 0 8 91 0.42 TTTTTTTTTG chr1 4404767 4404822 trf 4 13.8 4 96 0 101 0 25 25 49 1.51 TGTC chr1 4404831 4404950 trf 12 9.8 12 79 7 114 49 11 36 1 1.49 AGAGAGAGACAG chr1 4404831 4404896 trf 2 32.5 2 87 0 94 50 6 43 0 1.27 AG chr1 4404833 4404910 trf 10 7.3 10 89 5 91 51 9 38 0 1.34 AGAGAGAGAC chr1 4404849 4404934 trf 8 10.9 8 82 5 66 50 15 34 0 1.44 AGACAGAC chr1 4404893 4404934 trf 4 10.8 4 84 10 59 51 21 26 0 1.48 AGAC chr1 4409754 4409784 trf 5 6.2 5 92 7 53 83 16 0 0 0.65 ACAAA chr1 4413350 4413377 trf 10 2.7 10 100 0 54 22 44 11 22 1.84 TGACCTACCC chr1 4413543 4413641 trf 2 51.0 2 68 15 55 45 7 4 42 1.50 TA chr1 4413669 4413791 trf 8 15.2 8 97 0 199 50 11 13 25 1.75 ATAGATAC chr1 4418520 4418695 trf 4 44.0 4 89 3 165 64 1 33 0 1.04 AAAG chr1 4418693 4418732 trf 4 9.8 4 88 0 60 30 0 69 0 0.89 AGGG chr1 4426092 4426131 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 4430593 4430628 trf 6 5.8 6 89 0 52 37 48 11 2 1.54 CACACG chr1 4430763 4430798 trf 4 8.8 4 100 0 70 48 0 25 25 1.51 ATGA chr1 4431219 4431297 trf 6 12.8 6 74 8 68 46 1 51 1 1.17 AAGAGG chr1 4434027 4434121 trf 4 23.5 4 78 4 91 1 26 2 70 1.05 TTCT chr1 4449016 4449074 trf 4 14.5 4 100 0 116 50 0 25 24 1.50 GATA chr1 4449017 4449087 trf 12 6.7 10 84 12 56 50 0 24 25 1.50 ATAGATAGAT chr1 4450129 4450194 trf 4 16.2 4 96 0 121 49 0 26 24 1.51 AGAT chr1 4451133 4451210 trf 2 39.0 2 78 2 75 0 38 9 51 1.34 CT chr1 4451209 4451262 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 4454869 4455000 trf 7 18.7 7 98 0 253 0 42 28 29 1.56 CCTGCTG chr1 4455067 4455180 trf 2 56.5 2 73 6 86 2 7 40 49 1.44 TG chr1 4455155 4455218 trf 10 6.5 10 76 7 58 4 11 33 50 1.59 TGTGTATCTG chr1 4460640 4460901 trf 6 43.5 6 69 21 122 51 18 29 1 1.54 AGAGAC chr1 4460646 4460827 trf 10 18.1 10 65 15 61 49 18 30 1 1.54 AGAGACAGAG chr1 4460794 4460940 trf 12 13.2 12 70 13 82 52 20 26 0 1.51 AGACAGACAGAC chr1 4461336 4461470 trf 4 32.8 4 85 7 72 63 0 36 0 0.95 AAAG chr1 4461342 4461449 trf 12 8.9 12 90 0 142 58 0 41 0 0.98 AGAGAAAGAGAG chr1 4461342 4461449 trf 8 13.4 8 92 0 133 58 0 41 0 0.98 AGAGAGAG chr1 4461636 4461686 trf 2 25.0 2 95 0 91 52 48 0 0 1.00 AC chr1 4462220 4462247 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 4475373 4475435 trf 12 4.9 12 72 18 54 1 0 64 33 1.03 TGGTTGGTTGGG chr1 4476344 4476387 trf 4 10.8 4 100 0 86 48 0 51 0 1.00 GGAA chr1 4476754 4476811 trf 2 28.5 2 100 0 114 0 50 0 49 1.00 CT chr1 4479516 4479556 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 4480710 4481017 trf 2 153.5 2 91 0 461 3 1 46 47 1.30 GT chr1 4494965 4495068 trf 4 25.5 4 86 5 127 47 0 52 0 1.00 GAAG chr1 4504785 4504816 trf 12 2.7 12 95 5 55 35 16 9 38 1.81 TAGACATCTTTA chr1 4505771 4505804 trf 2 16.5 2 93 0 57 48 0 3 48 1.17 AT chr1 4509212 4509271 trf 2 28.5 2 83 6 73 6 1 45 45 1.40 GT chr1 4509322 4509787 trf 2 221.0 2 69 13 103 15 3 41 40 1.63 TG chr1 4510512 4510542 trf 3 10.0 3 100 0 60 33 0 66 0 0.92 AGG chr1 4512301 4512357 trf 12 4.4 13 73 10 53 78 21 0 0 0.75 AAAAAAAACAAAC chr1 4512307 4512355 trf 4 11.8 4 82 8 53 75 25 0 0 0.81 AAAC chr1 4512828 4513008 trf 4 45.5 4 81 10 201 1 46 0 52 1.07 CTTC chr1 4513875 4513956 trf 2 41.5 2 87 4 112 46 1 51 0 1.08 AG chr1 4515459 4515507 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 4515924 4515961 trf 4 9.2 4 100 0 74 0 0 27 72 0.84 GTTT chr1 4516457 4516492 trf 9 3.8 9 88 3 52 82 0 2 14 0.77 TAAAAAAAA chr1 4517193 4517241 trf 4 12.0 4 100 0 96 75 0 0 25 0.81 AATA chr1 4517463 4517491 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 4519070 4519096 trf 12 2.2 12 100 0 52 23 19 15 42 1.89 CTTTTCAAATGG chr1 4527137 4527198 trf 2 30.5 2 96 0 77 50 40 0 8 1.32 AC chr1 4528747 4528795 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 4530376 4530434 trf 2 29.5 2 81 10 66 51 41 5 1 1.34 AC chr1 4530946 4531030 trf 4 21.0 4 100 0 168 25 0 75 0 0.81 GAGG chr1 4534423 4534457 trf 1 34.0 1 100 0 68 100 0 0 0 0.00 A chr1 4536586 4536617 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 4543210 4543266 trf 12 4.8 12 82 4 69 0 12 39 48 1.41 CTGTGTGTGTGT chr1 4543211 4543266 trf 2 27.0 2 77 3 56 0 10 40 49 1.38 TG chr1 4544563 4544592 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 4546809 4546891 trf 5 16.8 5 92 5 141 0 36 0 63 0.95 TTCTC chr1 4550739 4550782 trf 9 4.9 9 80 5 52 51 4 0 44 1.22 TATATATAA chr1 4550739 4550875 trf 2 69.5 2 69 12 68 42 7 5 44 1.56 TA chr1 4556933 4556979 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 4566988 4567029 trf 1 41.0 1 85 0 55 92 0 2 4 0.44 A chr1 4571893 4571945 trf 10 5.2 10 90 0 86 0 65 11 23 1.25 CGTCCCCTCC chr1 4573806 4573865 trf 2 29.5 2 92 0 91 50 5 0 44 1.24 AT chr1 4574695 4574983 trf 7 42.3 7 73 8 175 53 5 15 25 1.64 ATATAGA chr1 4574718 4574804 trf 12 7.1 12 73 15 61 55 5 18 19 1.62 ATAGAATATAGA chr1 4579276 4579306 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 4581132 4581177 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 4587028 4587063 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 4601216 4601297 trf 2 40.5 2 97 0 153 0 0 48 51 1.00 TG chr1 4602823 4602885 trf 2 31.5 2 96 3 117 0 50 0 50 1.00 TC chr1 4605507 4605570 trf 4 15.8 4 77 12 67 79 20 0 0 0.73 CAAA chr1 4608509 4608573 trf 6 10.0 6 85 14 76 84 15 0 0 0.63 AAAACA chr1 4611414 4611475 trf 2 30.5 2 96 0 113 0 49 0 50 1.00 CT chr1 4618213 4618244 trf 12 2.6 12 94 0 53 41 3 6 48 1.45 TATATATTTAAG chr1 4619860 4619906 trf 4 11.5 4 100 0 92 23 50 0 26 1.50 TCCA chr1 4619903 4619948 trf 4 11.2 4 95 0 81 26 26 0 46 1.53 ATCT chr1 4620572 4620616 trf 2 22.5 2 95 4 81 50 50 0 0 1.00 AC chr1 4625335 4625385 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 4626798 4626850 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 4626851 4626890 trf 10 3.9 10 79 0 51 53 12 33 0 1.39 AGACAGAGAC chr1 4628582 4628698 trf 2 57.5 2 87 1 169 0 43 3 51 1.24 TC chr1 4629261 4629393 trf 8 15.6 8 77 16 63 50 1 46 2 1.23 GAGAGAAA chr1 4629275 4629393 trf 10 11.4 10 79 13 87 50 1 45 2 1.25 AGAGAGAAAG chr1 4629305 4629402 trf 2 51.5 2 80 15 118 48 0 50 1 1.07 AG chr1 4629973 4630028 trf 2 28.0 2 96 3 103 50 0 49 0 1.00 AG chr1 4630375 4630449 trf 8 9.1 8 78 8 51 37 4 9 48 1.55 TATGTATA chr1 4630380 4630428 trf 2 24.0 2 86 0 69 45 2 4 47 1.33 AT chr1 4631169 4631194 trf 7 3.6 7 100 0 50 56 12 32 0 1.36 AAGGACA chr1 4637538 4637627 trf 5 17.8 5 98 0 169 61 0 38 0 0.96 AGAAG chr1 4637823 4637855 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 4639716 4639754 trf 12 3.2 12 85 7 51 23 5 2 68 1.23 ATTTATCTATTT chr1 4640799 4640824 trf 12 2.1 12 100 0 50 52 40 0 8 1.31 ACACACACACAT chr1 4663890 4663945 trf 4 13.8 4 86 7 76 70 0 0 29 0.87 AAAT chr1 4669777 4669816 trf 3 12.7 3 89 5 60 2 2 28 66 1.18 TTG chr1 4674130 4674179 trf 12 4.1 12 86 0 53 2 12 24 61 1.42 GTTTGTTTGCTT chr1 4674148 4674182 trf 4 8.5 4 86 0 50 2 20 20 55 1.56 TTGC chr1 4675783 4675930 trf 5 29.4 5 97 0 258 42 0 57 0 0.99 AGGAG chr1 4675913 4676012 trf 5 20.0 5 92 2 146 75 0 24 0 0.80 AGAAA chr1 4676099 4676218 trf 4 29.2 4 89 3 139 66 0 32 0 0.98 AAAG chr1 4680229 4680268 trf 8 4.4 9 84 15 55 0 0 20 79 0.73 TTTTGTTTG chr1 4682366 4682391 trf 3 8.3 3 100 0 50 0 0 32 68 0.90 TGT chr1 4686167 4686210 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 4686523 4686566 trf 4 10.8 4 100 0 86 25 0 0 74 0.82 ATTT chr1 4687073 4687121 trf 4 11.8 4 97 2 87 0 2 22 75 0.91 TTTG chr1 4687853 4687882 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 4688312 4688339 trf 11 2.5 11 100 0 54 25 25 25 22 2.00 AGCTTACGAGC chr1 4697275 4697300 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 4698381 4698485 trf 3 34.7 3 86 7 149 36 0 63 0 0.95 AGG chr1 4700542 4700614 trf 2 36.0 2 91 0 99 47 1 4 47 1.30 AT chr1 4702032 4702088 trf 2 28.0 2 100 0 112 50 50 0 0 1.00 AC chr1 4702949 4703037 trf 4 22.0 4 90 0 113 46 0 53 0 1.00 GAGA chr1 4704114 4704163 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 4704504 4704549 trf 4 11.2 4 95 0 81 2 0 46 51 1.13 TGGT chr1 4704899 4704925 trf 7 3.7 7 100 0 52 0 0 11 88 0.52 TTTTTTG chr1 4706002 4706034 trf 12 2.7 12 95 0 55 62 0 37 0 0.95 GAAGGAAAGAAA chr1 4706709 4706734 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 AAAT chr1 4717825 4717881 trf 11 5.1 11 82 10 62 0 25 0 75 0.81 TTTTCTTTTTC chr1 4717826 4717878 trf 10 4.9 11 80 19 58 0 25 0 75 0.81 TTTCTCTTTTC chr1 4717887 4717940 trf 4 12.5 4 96 4 79 0 0 45 54 0.99 TTGG chr1 4722660 4722698 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 4726009 4726035 trf 5 5.2 5 100 0 52 0 19 19 61 1.35 TTGCT chr1 4729059 4729208 trf 3 49.3 3 95 4 273 0 32 0 67 0.91 TCT chr1 4730648 4730692 trf 3 14.7 3 95 0 79 0 68 0 31 0.90 TCC chr1 4736873 4736912 trf 2 19.5 2 89 0 60 51 46 2 0 1.14 CA chr1 4740083 4740148 trf 2 33.0 2 93 3 114 0 1 47 50 1.10 TG chr1 4744697 4744728 trf 5 6.2 5 100 0 62 0 0 19 80 0.71 TGTTT chr1 4748209 4748240 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 4749823 4749860 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 4755226 4755273 trf 3 15.7 3 100 0 94 65 0 34 0 0.93 AGA chr1 4755230 4755440 trf 6 34.8 6 97 0 141 49 0 50 0 1.00 GAAGAG chr1 4755271 4755389 trf 3 39.3 3 94 0 209 36 0 63 0 0.95 AGG chr1 4755369 4755442 trf 3 24.3 3 91 0 119 61 0 38 0 0.96 GAA chr1 4755475 4755603 trf 4 32.2 4 93 4 224 75 0 24 0 0.80 AAAG chr1 4755600 4755904 trf 5 61.8 5 81 11 283 33 0 65 0 0.95 AGAGG chr1 4757264 4757373 trf 6 18.3 6 91 7 107 0 63 0 36 0.95 TCCCTC chr1 4757328 4757373 trf 2 22.5 2 100 0 90 0 51 0 48 1.00 CT chr1 4757372 4757430 trf 2 29.5 2 76 10 57 48 43 0 8 1.34 CA chr1 4758274 4758306 trf 7 4.7 7 96 3 57 90 9 0 0 0.45 AAAAAAC chr1 4760300 4760351 trf 12 4.0 13 80 19 63 80 19 0 0 0.71 CAAAAAACAAAAA chr1 4760302 4760351 trf 6 7.8 6 80 15 55 81 18 0 0 0.69 AAAAAC chr1 4760309 4760355 trf 8 5.9 8 82 12 51 82 17 0 0 0.67 AAAAACAA chr1 4760833 4760868 trf 5 7.2 5 93 6 63 0 0 17 82 0.66 TGTTT chr1 4761115 4761150 trf 1 35.0 1 94 0 61 0 0 2 97 0.19 T chr1 4761182 4761267 trf 7 11.9 7 93 3 143 0 0 29 70 0.87 TTTGGTT chr1 4765562 4765613 trf 5 10.0 5 95 4 93 78 0 21 0 0.75 AAAAG chr1 4765612 4765687 trf 5 15.0 5 98 0 114 25 0 74 0 0.82 GGAGG chr1 4765613 4765745 trf 5 26.4 5 98 0 75 40 0 59 0 0.98 GAGGA chr1 4765666 4765762 trf 5 20.0 5 91 7 128 57 0 42 0 0.98 GAGAA chr1 4765689 4765873 trf 5 36.4 5 93 3 145 68 0 31 0 0.90 AAGAA chr1 4766330 4766357 trf 12 2.2 12 100 0 54 14 22 29 33 1.94 TGGACCTTGCAT chr1 4766943 4766977 trf 10 3.4 10 88 11 52 29 29 41 0 1.57 AGGCAGCAGC chr1 4769724 4769792 trf 1 68.0 1 73 0 55 0 0 13 86 0.56 T chr1 4769725 4769792 trf 8 7.6 9 84 15 79 0 0 13 86 0.57 TTTTTTTTG chr1 4770582 4770607 trf 9 2.8 9 100 0 50 0 20 60 20 1.37 GGCTGGGCT chr1 4770991 4771050 trf 2 29.5 2 92 0 100 0 3 45 50 1.18 TG chr1 4772541 4772569 trf 4 7.0 4 100 0 56 75 0 0 25 0.81 AATA chr1 4774350 4774412 trf 12 5.3 12 73 7 65 32 25 33 8 1.85 AGGCACACATGG chr1 4777182 4777216 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 TC chr1 4779109 4779174 trf 1 65.0 1 81 0 76 6 1 1 90 0.56 T chr1 4783593 4783638 trf 10 4.3 10 81 10 54 51 2 8 37 1.46 TATATATAGA chr1 4783907 4783944 trf 7 5.3 7 93 0 65 89 10 0 0 0.49 AAAAAAC chr1 4790407 4790505 trf 3 32.7 3 100 0 196 67 0 32 0 0.91 AAG chr1 4795084 4795132 trf 4 12.0 4 100 0 96 50 0 25 25 1.50 AGAT chr1 4795212 4795263 trf 5 10.0 5 83 12 68 0 0 15 84 0.63 GTTTT chr1 4796019 4796046 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 4804070 4804103 trf 5 6.8 5 93 6 59 63 36 0 0 0.95 AAACC chr1 4806380 4806424 trf 4 10.5 4 95 4 70 0 22 0 77 0.77 TTCT chr1 4806403 4806446 trf 11 4.3 11 88 11 58 0 13 0 86 0.58 TTTCTTTTCTT chr1 4809353 4809398 trf 12 3.9 12 82 8 58 0 0 15 84 0.62 TTTTTTTGTTTG chr1 4809863 4809903 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 4810949 4811175 trf 6 37.7 6 99 0 380 0 53 0 46 1.00 TTCTCC chr1 4811563 4811609 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 TG chr1 4811608 4811651 trf 2 21.5 2 100 0 86 48 0 51 0 1.00 GA chr1 4812326 4812352 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 4814879 4814905 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 4815547 4815577 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 4816464 4816565 trf 6 16.8 6 74 19 70 1 0 17 79 0.89 TTTTGT chr1 4819439 4819480 trf 4 10.2 4 87 10 57 0 0 19 80 0.71 TGTT chr1 4823988 4824015 trf 4 6.8 4 100 0 54 0 22 25 51 1.48 TGTC chr1 4832673 4832721 trf 6 8.5 6 77 13 57 0 66 2 31 1.03 CTCCCT chr1 4847381 4847417 trf 10 3.5 10 88 3 54 0 0 13 86 0.58 TTTTGTTTTT chr1 4848399 4848437 trf 4 9.5 4 100 0 76 0 0 26 73 0.83 TGTT chr1 4849234 4849287 trf 7 7.4 7 85 10 72 88 11 0 0 0.51 AAAAACA chr1 4849234 4849287 trf 1 53.0 1 76 0 52 88 11 0 0 0.51 A chr1 4849771 4849798 trf 3 9.0 3 100 0 54 66 33 0 0 0.92 CAA chr1 4850586 4850616 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 4856779 4856805 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 4859413 4859444 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 4863176 4863205 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 4866500 4866536 trf 12 3.0 12 100 0 72 8 41 33 16 1.78 CCAGGCTGGCCT chr1 4866700 4866735 trf 7 4.9 7 86 6 52 0 0 17 82 0.66 TTTTTTG chr1 4867294 4867335 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 4872469 4872526 trf 6 9.8 6 84 5 73 85 12 1 0 0.66 AAAAAC chr1 4872469 4872525 trf 11 5.5 11 81 10 66 85 12 1 0 0.67 AAAAACAAAAC chr1 4874497 4874537 trf 1 40.0 1 100 0 80 0 0 0 100 0.00 T chr1 4877593 4877629 trf 12 2.9 12 87 4 54 88 11 0 0 0.50 AAAAAAAAAAAC chr1 4878696 4878774 trf 5 15.8 5 97 2 149 0 39 0 60 0.97 CTCTT chr1 4878774 4878824 trf 12 4.2 12 92 0 82 0 70 0 30 0.88 CTCCCTCCCTCC chr1 4878774 4878824 trf 8 6.2 8 97 0 82 0 70 0 30 0.88 CTCCCTCC chr1 4880055 4880112 trf 9 6.7 9 78 11 57 0 52 0 47 1.00 TCTTCCTCC chr1 4880058 4880105 trf 12 4.2 12 84 15 73 0 55 0 44 0.99 TCCTCCTCTTCC chr1 4880061 4880108 trf 6 8.3 6 79 13 55 0 53 0 46 1.00 TCCTCT chr1 4885246 4885289 trf 4 10.8 4 100 0 86 25 23 0 51 1.49 TATC chr1 4885323 4885349 trf 4 6.5 4 100 0 52 23 0 23 53 1.46 TTAG chr1 4890961 4890998 trf 4 9.2 4 100 0 74 0 0 24 75 0.80 TGTT chr1 4893995 4894100 trf 4 26.2 4 90 0 147 0 5 48 45 1.26 GTGT chr1 4903635 4903688 trf 1 53.0 1 76 0 52 0 0 11 88 0.51 T chr1 4903638 4903688 trf 6 8.7 6 97 2 86 0 0 12 88 0.53 TTTTTG chr1 4909776 4909828 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 4909846 4909954 trf 8 13.5 8 83 7 112 43 0 56 0 0.99 AGAGGGAG chr1 4909851 4909953 trf 12 8.8 12 84 8 77 44 0 55 0 0.99 GAGGGAGAGAAA chr1 4909862 4909955 trf 2 46.5 2 91 0 141 45 0 54 0 0.99 AG chr1 4914302 4914366 trf 4 16.0 4 100 0 128 75 0 25 0 0.81 AAAG chr1 4914915 4915007 trf 4 23.0 4 91 4 132 45 1 53 0 1.07 GAGA chr1 4914915 4915007 trf 10 9.2 10 90 3 132 45 1 53 0 1.07 GAGAGAGAGA chr1 4914915 4915007 trf 6 15.3 6 89 4 132 45 1 53 0 1.07 GAGAGA chr1 4918463 4918493 trf 4 7.5 4 100 0 60 23 0 76 0 0.78 GGAG chr1 4918493 4918545 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 4922398 4922439 trf 4 10.2 4 100 0 82 24 0 75 0 0.80 GAGG chr1 4922440 4922492 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 4931223 4931346 trf 2 61.0 2 81 1 147 46 4 4 44 1.43 TA chr1 4940622 4940732 trf 5 22.0 5 98 0 157 73 0 26 0 0.83 GAAAA chr1 4940873 4940919 trf 5 9.2 5 100 0 92 80 19 0 0 0.71 AAAAC chr1 4941825 4941867 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 4943919 4943944 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 4944833 4944859 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 4946142 4946291 trf 4 38.5 4 85 6 164 24 27 0 47 1.57 CTAT chr1 4946636 4946690 trf 3 18.0 3 77 7 56 1 61 0 37 1.07 CCT chr1 4957654 4957697 trf 8 5.4 8 85 0 59 34 27 23 13 1.93 CAGGATCA chr1 4958310 4958355 trf 1 45.0 1 100 0 90 100 0 0 0 0.00 A chr1 4958352 4958388 trf 4 8.8 4 93 6 63 77 0 22 0 0.76 AAAG chr1 4960945 4960970 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 4976937 4976965 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 4977037 4977097 trf 2 30.5 2 79 3 68 50 41 5 3 1.41 AC chr1 4977098 4977144 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 AG chr1 4982283 4982310 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 4998226 4998278 trf 12 4.4 12 78 2 52 0 1 13 84 0.70 TTTTTTTTTTTG chr1 4998227 4998278 trf 7 6.6 8 74 17 54 0 1 13 84 0.71 TTTTTTTG chr1 5003139 5003168 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 5004130 5004156 trf 11 2.4 11 100 0 52 0 7 0 92 0.39 TTTTTTCTTTT chr1 5004162 5004256 trf 4 23.5 4 93 0 116 0 32 0 67 0.91 TTCT chr1 5005387 5005522 trf 8 15.2 10 76 23 151 56 0 43 0 0.99 GAGAGAGAGA chr1 5005390 5005523 trf 10 12.6 10 98 1 203 57 0 42 0 0.99 AGAGAAGAGA chr1 5008479 5008513 trf 4 8.5 4 100 0 68 76 23 0 0 0.79 AAAC chr1 5011516 5011560 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 5011958 5012009 trf 4 12.8 4 100 0 102 0 49 0 50 1.00 CTTC chr1 5012006 5012070 trf 4 15.8 4 98 1 119 1 25 0 73 0.92 CTTT chr1 5013649 5013689 trf 5 8.0 5 89 10 64 40 17 42 0 1.49 CAGAG chr1 5014847 5014891 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 5022069 5022114 trf 3 15.0 3 95 0 81 33 64 0 2 1.06 CAC chr1 5022380 5022447 trf 3 22.3 3 84 6 73 31 0 62 5 1.19 GAG chr1 5023421 5023468 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 5024077 5024121 trf 3 14.7 3 100 0 88 68 0 0 31 0.90 AAT chr1 5030576 5030644 trf 4 17.0 4 100 0 136 0 75 0 25 0.81 TCCC chr1 5031375 5031467 trf 5 18.4 5 97 0 175 59 39 0 1 1.04 ACCAA chr1 5032869 5032920 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 5032920 5033010 trf 2 45.0 2 95 0 162 52 0 47 0 1.00 GA chr1 5044111 5044190 trf 1 79.0 1 84 0 86 89 6 3 0 0.57 A chr1 5046121 5046197 trf 2 39.0 2 94 5 138 0 50 0 50 1.00 CT chr1 5052369 5052397 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 5055018 5055088 trf 3 23.3 3 77 0 59 44 0 54 1 1.09 GAG chr1 5066466 5066517 trf 6 8.7 6 87 12 79 0 33 0 66 0.92 TTTCCT chr1 5066518 5066599 trf 4 20.2 4 87 0 117 0 43 4 51 1.23 TTCC chr1 5073320 5073397 trf 6 13.2 6 77 10 70 1 70 0 28 0.96 CCCTCT chr1 5075117 5075154 trf 2 18.5 2 91 0 56 54 43 0 2 1.14 AC chr1 5075460 5075503 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 5087800 5087904 trf 5 21.0 5 98 2 201 0 39 0 60 0.97 CTTTC chr1 5087904 5087944 trf 3 13.3 3 100 0 80 0 0 32 67 0.91 TGT chr1 5094711 5094744 trf 2 16.5 2 100 0 66 51 0 0 48 1.00 AT chr1 5102761 5102801 trf 1 40.0 1 100 0 80 0 0 0 100 0.00 T chr1 5105293 5105326 trf 1 33.0 1 93 0 57 0 0 3 96 0.20 T chr1 5114833 5114876 trf 2 21.5 2 90 0 68 2 0 48 48 1.14 GT chr1 5114875 5114981 trf 2 53.0 2 86 0 140 48 1 50 0 1.12 GA chr1 5114957 5114989 trf 10 3.2 10 100 0 64 59 9 31 0 1.29 GAGACAAAGA chr1 5115179 5115206 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 5120107 5120136 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 5129923 5129984 trf 1 61.0 1 80 0 68 1 0 8 90 0.53 T chr1 5131926 5131956 trf 4 7.5 4 92 0 51 23 3 0 73 0.98 TTTA chr1 5137284 5137326 trf 5 8.4 5 100 0 84 80 19 0 0 0.70 AACAA chr1 5139356 5139384 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 5139655 5139691 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 5142703 5142962 trf 4 64.8 4 82 0 293 9 0 46 43 1.38 TGTG chr1 5146736 5146763 trf 12 2.2 12 100 0 54 7 55 14 22 1.64 CCCACTTCCTGG chr1 5155986 5156049 trf 12 5.2 12 81 7 65 11 26 14 47 1.77 TCTGTCTGTCTA chr1 5155986 5156029 trf 4 10.8 4 84 0 59 4 27 20 46 1.71 TCTG chr1 5155990 5156057 trf 8 8.4 8 88 0 62 13 26 11 47 1.77 TCTGTCTA chr1 5156026 5156058 trf 4 8.0 4 100 0 64 25 25 0 50 1.50 TCTA chr1 5162955 5162985 trf 1 30.0 1 93 0 51 0 3 0 96 0.21 T chr1 5164575 5164626 trf 5 10.2 5 81 12 52 0 1 15 82 0.76 TGTTT chr1 5164580 5164629 trf 10 4.9 10 82 9 64 0 0 14 85 0.59 TGTTTTTTTT chr1 5164582 5164627 trf 6 7.7 6 83 16 51 0 0 13 86 0.57 TTTTGT chr1 5164587 5164618 trf 7 4.6 7 96 4 55 0 0 12 87 0.55 TTTTGTT chr1 5164587 5164628 trf 12 3.3 13 83 10 59 0 0 12 87 0.53 TTTTGTTTTTGTT chr1 5173129 5173166 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TATT chr1 5184366 5184409 trf 7 6.3 7 83 5 61 0 0 16 83 0.64 TTTTGTT chr1 5203453 5203500 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 5203921 5203953 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 5209459 5209494 trf 12 3.1 12 92 8 56 0 11 8 80 0.92 TTCTTTTCTGTT chr1 5214462 5214514 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 5214857 5214882 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 ACAA chr1 5215409 5215444 trf 4 9.0 4 93 6 63 0 0 22 77 0.78 GTTT chr1 5217322 5217392 trf 5 13.8 5 89 8 106 80 17 1 1 0.87 AAAAC chr1 5218981 5219028 trf 4 11.8 4 81 0 58 2 29 23 44 1.65 TGTC chr1 5222649 5222686 trf 2 18.5 2 100 0 74 0 0 51 48 1.00 GT chr1 5222685 5222719 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 5224485 5224522 trf 4 9.2 4 100 0 74 0 48 0 51 1.00 TTCC chr1 5225864 5225896 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 5237128 5237167 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 5237824 5237913 trf 4 22.0 4 90 6 144 0 28 0 71 0.86 TTTC chr1 5258417 5258458 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 5263867 5263900 trf 6 5.5 6 100 0 66 84 0 15 0 0.61 AAAAGA chr1 5265961 5265992 trf 9 3.6 9 91 8 55 90 0 9 0 0.46 GAAAAAAAA chr1 5274497 5274528 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 5277382 5277429 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 5298698 5298771 trf 4 18.5 4 94 2 130 24 24 1 49 1.58 TCTA chr1 5300361 5300654 trf 10 33.7 9 64 24 55 54 4 3 36 1.39 TATATATAA chr1 5304092 5304168 trf 5 15.2 5 94 0 53 65 19 14 0 1.26 ACAAA chr1 5305885 5305926 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 5312288 5312324 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 5312323 5312357 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 5316927 5316957 trf 4 7.5 4 92 0 51 76 3 0 20 0.92 AAAT chr1 5318870 5318899 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 5327475 5327585 trf 2 59.5 2 75 15 103 0 45 0 52 1.13 CT chr1 5327578 5327698 trf 8 14.9 8 85 0 150 1 50 0 47 1.10 CTCTTTCC chr1 5328052 5328085 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 5334010 5334043 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 5341901 5341999 trf 12 8.7 11 79 13 76 65 0 33 1 1.00 AAAGAAGAAAG chr1 5341905 5341997 trf 4 23.0 4 84 12 64 65 0 33 1 1.00 AGAA chr1 5357241 5357266 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 5362120 5362187 trf 5 13.2 5 84 9 64 74 0 23 1 0.90 AAAAG chr1 5362129 5362194 trf 10 6.4 10 74 13 53 69 0 27 3 1.03 GAAAAGAAAG chr1 5363887 5363942 trf 2 27.5 2 92 0 92 0 52 0 47 1.00 TC chr1 5366416 5366451 trf 4 8.2 4 93 6 52 0 0 22 77 0.78 TGTT chr1 5368221 5368265 trf 8 5.5 8 97 0 79 0 38 20 40 1.53 CTCTTGCG chr1 5368293 5368347 trf 8 7.2 8 85 12 53 5 37 18 38 1.74 CTTGCGCT chr1 5368293 5368322 trf 8 3.6 8 100 0 58 10 37 13 37 1.79 CTTGCACT chr1 5369469 5369505 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 5378275 5378305 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 5380889 5380943 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 5382813 5382845 trf 12 2.7 12 95 0 55 53 0 46 0 1.00 GAGAAGGAAGAA chr1 5383016 5383078 trf 4 16.0 4 90 6 101 72 25 1 0 0.94 AAAC chr1 5384125 5384210 trf 3 28.3 3 92 4 145 34 34 0 31 1.58 CTA chr1 5384733 5384784 trf 4 13.0 4 79 4 59 52 0 47 0 1.00 AGGA chr1 5384782 5384850 trf 2 34.0 2 100 0 136 50 0 50 0 1.00 GA chr1 5384847 5384936 trf 4 22.2 4 95 0 133 69 0 30 0 0.89 AGAA chr1 5392582 5392642 trf 2 30.0 2 93 0 102 3 0 46 50 1.18 TG chr1 5402016 5402054 trf 12 3.0 13 84 7 60 39 44 13 2 1.57 CAAACGCAGCCAC chr1 5403128 5403218 trf 2 46.5 2 87 6 132 47 0 52 0 1.00 GA chr1 5411523 5411557 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 5414200 5414252 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 5414256 5414333 trf 8 9.6 8 81 0 82 51 3 42 1 1.28 AGAGAGAG chr1 5414256 5414333 trf 6 12.8 6 83 0 82 51 3 42 1 1.28 AGAGAG chr1 5414627 5414671 trf 5 8.8 5 100 0 88 81 18 0 0 0.68 AAAAC chr1 5417908 5417970 trf 4 15.5 4 93 0 106 25 45 0 29 1.54 ATCC chr1 5422542 5422567 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 5438679 5438705 trf 12 2.2 12 100 0 52 50 15 0 34 1.45 ATACATACATAT chr1 5438706 5438810 trf 4 26.0 4 96 0 136 0 32 0 67 0.91 CTTT chr1 5442419 5442504 trf 2 42.5 2 87 0 116 47 45 2 4 1.36 CA chr1 5448816 5448873 trf 4 12.8 4 85 10 51 71 24 0 3 1.01 AAAC chr1 5448816 5448873 trf 10 6.4 8 79 16 51 71 24 0 3 1.01 AAACAAAC chr1 5450201 5450241 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 5455397 5455470 trf 2 37.5 2 83 5 96 2 0 50 46 1.15 GT chr1 5457138 5457182 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 5460583 5460613 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 5462091 5462128 trf 7 5.6 7 84 9 51 0 0 13 86 0.57 TTTTTTG chr1 5468554 5468598 trf 12 3.8 12 82 17 58 84 0 0 15 0.63 AAAAATAAAAAT chr1 5468555 5468598 trf 5 7.8 5 87 12 50 83 0 0 16 0.64 AAAAT chr1 5469904 5469965 trf 4 15.2 4 100 0 122 0 24 0 75 0.80 TTCT chr1 5469962 5470125 trf 4 40.8 4 84 7 116 0 59 1 38 1.10 CTTC chr1 5470122 5470182 trf 4 15.0 4 96 0 111 0 23 0 76 0.78 CTTT chr1 5487009 5487105 trf 3 31.7 3 97 2 183 66 0 33 0 0.92 GAA chr1 5487103 5487156 trf 3 17.7 3 100 0 106 33 0 66 0 0.92 GAG chr1 5487521 5487546 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 5495934 5495980 trf 2 23.0 2 95 0 83 52 47 0 0 1.00 AC chr1 5499766 5499819 trf 2 26.5 2 100 0 106 50 0 0 49 1.00 AT chr1 5502768 5502873 trf 2 53.0 2 84 1 140 46 2 2 47 1.32 TA chr1 5503204 5503248 trf 12 3.7 12 81 0 61 50 31 0 18 1.47 CATACATACACA chr1 5513529 5513568 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 5513567 5513612 trf 2 22.5 2 95 0 81 2 0 46 51 1.13 TG chr1 5515599 5515678 trf 2 39.0 2 88 2 113 50 44 2 2 1.29 AC chr1 5519254 5519313 trf 3 19.7 3 82 0 73 0 57 0 42 0.98 TCC chr1 5520532 5520688 trf 6 25.7 6 95 2 276 0 66 0 33 0.92 CTCTCC chr1 5526298 5526324 trf 4 6.5 4 100 0 52 23 0 0 76 0.78 TTAT chr1 5531354 5531389 trf 4 8.8 4 87 0 52 71 0 5 22 1.07 AAAT chr1 5543913 5543947 trf 12 3.1 11 88 12 52 79 20 0 0 0.73 AAACAAAAAAC chr1 5548871 5548911 trf 12 3.3 12 92 0 62 15 0 50 35 1.44 TGGTGGTAGTGA chr1 5548927 5549000 trf 6 12.2 6 94 0 92 0 9 49 41 1.35 GTGTGC chr1 5553914 5553946 trf 11 3.0 11 95 4 57 93 0 6 0 0.34 AAAAGAAAAAA chr1 5555288 5555358 trf 6 11.7 6 75 11 54 0 28 11 60 1.32 CTCTTG chr1 5563980 5564038 trf 2 29.0 2 96 0 107 0 48 1 50 1.11 CT chr1 5564653 5564833 trf 6 30.5 6 68 17 74 58 11 28 0 1.37 GAGCAA chr1 5566329 5566355 trf 12 2.2 12 100 0 52 0 19 0 80 0.71 TCTTTTTTCTTT chr1 5567460 5567640 trf 6 30.5 6 68 17 74 58 11 28 0 1.37 GAGCAA chr1 5568601 5568637 trf 2 18.5 2 94 5 65 50 0 0 50 1.00 AT chr1 5568723 5568751 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 5570289 5570352 trf 2 32.0 2 96 3 119 0 0 50 49 1.00 GT chr1 5573529 5573570 trf 10 4.3 10 81 12 50 63 0 36 0 0.95 AGAAAGAAAG chr1 5576449 5576477 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 5577489 5577545 trf 2 28.0 2 85 0 58 50 10 39 0 1.37 AG chr1 5577513 5577545 trf 12 2.7 12 100 0 64 50 6 43 0 1.27 AGAGAGAGAGAC chr1 5579716 5579763 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 5579770 5579818 trf 2 24.0 2 95 0 87 52 0 47 0 1.00 AG chr1 5589326 5589357 trf 3 10.3 3 100 0 62 0 0 67 32 0.91 GGT chr1 5589375 5589400 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 5589779 5589835 trf 2 28.0 2 100 0 112 0 0 50 50 1.00 TG chr1 5591315 5591355 trf 1 40.0 1 89 0 53 92 0 7 0 0.38 A chr1 5592597 5592668 trf 2 35.5 2 100 0 142 0 49 0 50 1.00 TC chr1 5593741 5593778 trf 2 18.5 2 100 0 74 0 0 51 48 1.00 GT chr1 5593777 5593863 trf 2 43.0 2 79 9 95 45 5 48 0 1.26 GA chr1 5594361 5594413 trf 12 4.3 12 100 0 104 42 25 17 15 1.88 ACAGATATCAGC chr1 5594458 5594521 trf 12 5.2 12 96 0 117 42 25 14 17 1.87 ACAGATATCAGC chr1 5601537 5601572 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 5607487 5607672 trf 8 22.6 8 82 9 90 0 65 1 33 1.00 TTCCTCCC chr1 5607492 5607620 trf 4 30.2 4 87 4 116 0 72 1 25 0.93 TCCC chr1 5607509 5607570 trf 5 12.6 5 98 1 108 0 80 0 19 0.72 CCCTC chr1 5607611 5607672 trf 4 15.2 4 96 0 113 0 50 0 49 1.00 TTCC chr1 5609482 5609537 trf 4 13.8 4 100 0 110 0 25 0 74 0.82 TCTT chr1 5609537 5609591 trf 4 13.5 4 100 0 108 0 50 0 50 1.00 CTTC chr1 5609613 5609640 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 5610514 5610616 trf 2 51.5 2 86 5 145 44 0 54 0 1.06 GA chr1 5613005 5613035 trf 4 7.5 4 92 0 51 43 0 3 53 1.17 TTAA chr1 5617139 5617190 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 5617614 5617727 trf 5 22.6 5 99 0 181 0 44 0 55 0.99 TTCTC chr1 5617700 5617743 trf 10 4.3 10 93 0 59 0 67 0 32 0.91 TCCCTTCCCC chr1 5617742 5617792 trf 5 10.0 5 100 0 100 0 20 0 80 0.72 CTTTT chr1 5620594 5620641 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 5621408 5621475 trf 2 33.5 2 96 0 125 1 0 47 50 1.10 TG chr1 5625249 5625297 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 5627328 5627372 trf 1 44.0 1 86 0 61 0 0 6 93 0.36 T chr1 5630840 5630866 trf 12 2.2 12 100 0 52 76 0 0 23 0.78 AAAAATTTAAAA chr1 5632891 5633261 trf 3 123.3 3 90 2 330 55 0 43 0 1.03 AAG chr1 5658058 5658090 trf 4 8.0 4 100 0 64 50 50 0 0 1.00 AACC chr1 5668187 5668233 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 5668713 5668748 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 5686945 5686971 trf 5 5.2 5 100 0 52 23 57 0 19 1.40 ACTCC chr1 5687157 5687199 trf 2 21.0 2 90 0 66 0 0 45 54 0.99 GT chr1 5691918 5691957 trf 12 3.2 12 81 0 51 38 0 7 53 1.30 TATATATGTATA chr1 5691956 5691994 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 5699021 5699138 trf 8 15.4 8 73 7 66 2 35 11 49 1.53 TCTGTCTC chr1 5699021 5699143 trf 12 10.0 12 75 3 91 2 36 12 49 1.54 TCTGTCTCTCTG chr1 5699033 5699140 trf 6 17.5 6 81 3 97 2 35 11 50 1.53 TCTGTC chr1 5706113 5706210 trf 3 32.7 3 93 2 169 68 0 30 1 0.97 AAG chr1 5706740 5706765 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 5710681 5710906 trf 6 39.8 6 80 12 208 45 0 54 0 0.99 AGAGAG chr1 5712339 5712373 trf 5 6.8 5 100 0 68 82 17 0 0 0.67 AAAAC chr1 5722876 5722912 trf 4 9.0 4 93 0 63 47 0 25 27 1.52 TGAA chr1 5723313 5723338 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 5728531 5728562 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 5759908 5759948 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 5763941 5763986 trf 12 3.8 12 93 0 81 51 6 42 0 1.28 AGAGAGACAGAG chr1 5763941 5763984 trf 2 21.5 2 90 0 68 51 4 44 0 1.22 AG chr1 5766804 5766840 trf 12 3.0 12 91 0 54 19 69 0 11 1.18 TCCCCCACCCAC chr1 5769719 5769850 trf 4 33.0 4 93 1 165 67 0 32 0 0.91 AAGA chr1 5769740 5769775 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 5769909 5769943 trf 4 8.8 4 87 6 52 0 0 26 73 0.83 TTTG chr1 5773234 5773313 trf 5 15.0 5 90 1 95 0 74 0 25 0.82 CCTCC chr1 5773611 5773672 trf 5 12.2 5 100 0 122 19 0 80 0 0.72 GGGAG chr1 5774902 5774967 trf 5 12.8 5 95 1 85 73 7 0 18 1.06 AAAAT chr1 5780433 5780476 trf 9 4.8 9 91 0 68 18 13 34 32 1.90 CATTGTGAG chr1 5789539 5789575 trf 1 36.0 1 88 0 54 94 5 0 0 0.31 A chr1 5797430 5797457 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 5799310 5799348 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 TA chr1 5813833 5813933 trf 9 12.1 9 81 17 128 0 28 0 72 0.86 TCTTCTTCT chr1 5813835 5813936 trf 5 18.6 5 96 1 121 0 27 0 72 0.85 TTCTT chr1 5831559 5831626 trf 4 17.0 4 96 3 127 49 0 25 25 1.51 GATA chr1 5833063 5833091 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 TTTG chr1 5834678 5834720 trf 5 8.4 5 94 0 66 0 0 14 85 0.59 TTTGT chr1 5843503 5843562 trf 5 12.4 5 81 12 63 0 3 18 77 0.90 TTGTT chr1 5843507 5843595 trf 10 9.9 9 75 20 55 1 4 19 75 1.05 TTTGTTTTG chr1 5844582 5844632 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 5859830 5859886 trf 3 18.7 3 100 0 112 33 0 66 0 0.92 AGG chr1 5859884 5859975 trf 3 30.3 3 100 0 182 67 0 32 0 0.91 AGA chr1 5866065 5866134 trf 4 17.2 4 80 0 66 5 1 40 52 1.34 GTGT chr1 5868011 5868059 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 5877998 5878042 trf 4 11.0 4 100 0 88 50 0 25 25 1.50 GATA chr1 5885936 5886006 trf 2 35.0 2 97 0 131 1 0 48 50 1.09 GT chr1 5889756 5889789 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 5894372 5894399 trf 11 2.5 11 100 0 54 22 14 18 44 1.86 TGATATCTGTC chr1 5896267 5896295 trf 4 7.0 4 100 0 56 50 0 25 25 1.50 TAGA chr1 5896294 5896333 trf 4 9.8 4 100 0 78 51 23 25 0 1.49 AGAC chr1 5897588 5897723 trf 4 34.2 4 83 8 170 25 24 3 46 1.69 TCTA chr1 5897782 5897827 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 5899933 5899986 trf 4 13.2 4 95 0 88 45 26 3 24 1.70 CATA chr1 5902688 5902719 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 5904342 5904384 trf 2 21.0 2 95 0 75 47 50 0 2 1.14 CA chr1 5907758 5907811 trf 2 26.5 2 100 0 106 0 0 50 49 1.00 GT chr1 5907823 5907870 trf 11 4.5 11 77 20 55 29 0 70 0 0.88 GGGAGGGGAGA chr1 5915676 5915763 trf 8 10.8 8 92 1 138 34 62 0 3 1.12 CACCACAC chr1 5915767 5915802 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 5922244 5922279 trf 2 17.0 2 94 5 61 48 2 0 48 1.16 AT chr1 5927628 5927704 trf 6 12.7 6 100 0 152 48 0 34 17 1.47 GATGAA chr1 5934365 5934492 trf 5 25.6 5 94 1 193 0 35 0 64 0.94 TTTCC chr1 5941730 5941884 trf 5 30.6 5 80 8 71 55 0 42 0 1.09 AAGAG chr1 5941733 5941758 trf 12 2.1 12 100 0 50 68 0 32 0 0.90 AAAGAGAAGAGA chr1 5941839 5941907 trf 10 7.1 10 86 8 97 73 0 26 0 0.83 AGAAGAGAAA chr1 5941839 5941902 trf 5 12.6 5 79 0 72 73 0 26 0 0.84 AGAAA chr1 5945563 5945631 trf 12 5.4 12 73 19 50 80 14 2 1 0.89 AAAAAACAAAAC chr1 5945566 5945612 trf 4 11.8 4 84 13 60 80 19 0 0 0.71 AAAC chr1 5946790 5946833 trf 2 22.0 2 95 4 79 0 0 51 48 1.00 TG chr1 5948697 5948729 trf 10 3.1 10 95 4 55 87 0 12 0 0.54 AAAAAGAAAA chr1 5952980 5953048 trf 3 22.7 3 77 5 66 1 55 0 42 1.08 TCC chr1 5952992 5953048 trf 9 6.2 9 89 8 78 1 57 0 41 1.09 TCCTCTTCC chr1 5957812 5957894 trf 2 41.0 2 81 0 56 40 4 8 46 1.56 AT chr1 5960999 5961148 trf 5 29.8 5 95 0 154 51 0 48 0 1.00 AGAGG chr1 5962650 5962800 trf 4 36.2 4 83 9 185 31 0 68 0 0.90 AGGG chr1 5962811 5962887 trf 4 19.0 4 97 0 143 73 0 26 0 0.83 AAGA chr1 5963265 5963305 trf 4 10.0 4 100 0 80 0 0 25 75 0.81 GTTT chr1 5971171 5971208 trf 4 9.5 4 83 16 51 0 0 24 75 0.80 TGTT chr1 5976833 5976880 trf 11 4.4 10 82 12 58 85 12 2 0 0.70 CAAAAAAAAA chr1 5980435 5980516 trf 2 40.5 2 89 0 126 50 44 4 0 1.23 AC chr1 5984411 5984438 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 5990629 5990659 trf 9 3.3 9 100 0 60 20 10 26 43 1.83 TGGATTATC chr1 5992617 5992650 trf 8 4.1 8 88 11 50 27 39 24 9 1.85 CCCAGGAT chr1 6000304 6000447 trf 2 71.5 2 92 0 241 0 46 2 51 1.15 TC chr1 6002721 6002812 trf 2 45.5 2 86 0 119 45 3 4 47 1.39 TA chr1 6003029 6003240 trf 9 23.0 9 69 10 124 47 0 51 0 1.07 GAGAAGGAG chr1 6003029 6003249 trf 6 37.0 6 84 8 272 47 0 51 0 1.06 GAGAAG chr1 6003956 6003988 trf 4 7.8 4 93 6 55 0 0 21 78 0.76 TTTG chr1 6005524 6005760 trf 8 26.4 10 68 24 145 43 1 52 2 1.23 GAGAGAGAGA chr1 6005609 6005748 trf 5 27.8 5 92 2 226 42 0 56 0 1.09 AGAGG chr1 6007406 6007435 trf 11 2.7 11 94 5 51 17 0 0 82 0.66 ATTTATTTTTT chr1 6007406 6007451 trf 4 12.0 4 81 9 51 17 0 4 77 0.92 ATTT chr1 6008812 6008864 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 6022354 6022386 trf 4 8.0 4 100 0 64 0 0 25 75 0.81 TTTG chr1 6023294 6023325 trf 4 7.8 4 100 0 62 25 0 0 74 0.82 TTAT chr1 6023941 6024009 trf 6 10.7 6 77 16 66 2 2 17 76 1.04 TTTTTG chr1 6025871 6025901 trf 4 7.5 4 100 0 60 23 0 0 76 0.78 TTTA chr1 6025929 6025961 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 6033243 6033282 trf 4 9.8 4 100 0 78 51 23 0 25 1.49 ATAC chr1 6035155 6035309 trf 5 29.6 5 91 5 227 0 19 0 79 0.77 TTTCT chr1 6041133 6041162 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 6041902 6041945 trf 5 9.2 5 87 7 56 2 0 39 58 1.11 GTTTG chr1 6041949 6042038 trf 5 18.4 5 78 15 82 0 0 23 76 0.79 GTTTT chr1 6051087 6051176 trf 5 18.6 5 89 4 53 1 0 29 69 0.95 TTTTG chr1 6051098 6051178 trf 5 17.0 5 93 5 100 0 0 33 66 0.92 TTTGG chr1 6056349 6056380 trf 6 5.2 6 92 0 53 0 38 12 48 1.42 CTGCTT chr1 6056413 6056444 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 6060780 6060806 trf 12 2.2 12 100 0 52 92 7 0 0 0.39 AAAAAAAAAAAC chr1 6061334 6061445 trf 5 23.0 5 89 7 167 39 0 60 0 0.97 GAGAG chr1 6066035 6066077 trf 12 3.3 12 90 6 57 7 35 9 47 1.64 CTCTGTCTCTAT chr1 6072914 6072955 trf 3 13.7 3 100 0 82 68 0 0 31 0.90 AAT chr1 6077183 6077227 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 6078492 6078519 trf 12 2.2 12 100 0 54 25 37 14 22 1.93 ACCAGATGTTCC chr1 6085122 6085147 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 6085755 6085801 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 6086267 6086299 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 6086306 6086351 trf 4 11.2 4 95 0 81 24 0 2 73 0.95 ATTT chr1 6092498 6092525 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 6098983 6099061 trf 4 19.8 4 92 2 122 1 50 0 48 1.09 CTTC chr1 6099664 6099690 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 6105747 6105961 trf 4 53.5 4 90 0 266 0 32 0 66 0.95 TTTC chr1 6108218 6108257 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 6112897 6112972 trf 4 19.0 4 78 20 54 81 18 0 0 0.69 CAAA chr1 6112900 6112972 trf 5 14.6 5 80 11 78 81 18 0 0 0.68 AAAAC chr1 6115981 6116040 trf 2 29.5 2 96 0 109 52 0 47 0 1.00 AG chr1 6116448 6116546 trf 4 24.5 4 97 0 187 73 0 26 0 0.83 GAAA chr1 6116573 6116636 trf 4 15.8 4 100 0 126 50 0 49 0 1.00 GAAG chr1 6118165 6118198 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 6126322 6126357 trf 4 8.8 4 100 0 70 51 22 0 25 1.48 AATC chr1 6131615 6131687 trf 12 5.9 12 90 1 72 59 0 15 25 1.36 ATAAATAAATAG chr1 6131615 6131674 trf 8 7.4 8 96 0 64 59 0 15 25 1.36 ATAAATAG chr1 6131635 6131678 trf 4 10.8 4 100 0 86 51 0 23 25 1.49 ATAG chr1 6132872 6132909 trf 3 12.3 3 100 0 74 0 0 64 35 0.94 TGG chr1 6133636 6133749 trf 5 22.8 5 94 1 201 79 0 20 0 0.73 GAAAA chr1 6134730 6134782 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 6136630 6136661 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 6140795 6140845 trf 4 12.8 4 91 4 84 0 2 22 76 0.89 TTTG chr1 6153282 6153313 trf 4 8.0 4 92 7 55 77 22 0 0 0.77 AAAC chr1 6153832 6153879 trf 1 47.0 1 82 0 58 0 8 0 91 0.42 T chr1 6156230 6156260 trf 12 2.6 11 90 10 51 80 20 0 0 0.72 CAAAAAACAAA chr1 6156294 6156320 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 6157850 6157891 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 6173930 6173955 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 6176301 6176409 trf 2 54.0 2 90 0 162 50 44 5 0 1.25 AC chr1 6176701 6176727 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 6176776 6176831 trf 4 14.2 4 74 14 53 0 0 27 72 0.85 TTTG chr1 6192524 6192566 trf 1 42.0 1 85 0 57 0 7 0 92 0.37 T chr1 6194207 6194257 trf 6 8.5 6 84 8 59 78 20 2 0 0.86 CAAAAA chr1 6196713 6196751 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 6196870 6196974 trf 4 26.0 4 86 7 149 0 29 0 70 0.88 CTTT chr1 6197607 6197647 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 6201678 6201712 trf 5 6.8 5 100 0 68 0 0 17 82 0.67 TTTTG chr1 6205479 6205535 trf 4 14.2 4 76 23 57 3 0 19 76 0.93 TGTT chr1 6216986 6217028 trf 7 5.9 7 81 13 50 0 2 14 83 0.75 TTTTTTG chr1 6226499 6226537 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 6228917 6228955 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 6229791 6229818 trf 5 5.4 5 100 0 54 77 22 0 0 0.76 CAAAA chr1 6231052 6231082 trf 2 15.5 2 93 6 53 0 0 50 50 1.00 TG chr1 6231684 6231737 trf 2 26.5 2 96 0 97 49 49 1 0 1.12 AC chr1 6232823 6232885 trf 7 8.3 7 73 19 54 3 1 16 79 0.95 TTTTGTT chr1 6233696 6233739 trf 5 9.0 5 92 7 56 86 13 0 0 0.58 AAAAC chr1 6233860 6233900 trf 2 20.0 2 94 0 71 0 0 47 52 1.00 GT chr1 6235600 6235793 trf 2 96.5 2 85 0 242 44 47 5 2 1.40 AC chr1 6236384 6236434 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 6252275 6252316 trf 2 20.5 2 100 0 82 51 0 0 48 1.00 AT chr1 6252458 6252513 trf 4 12.0 5 79 16 50 0 0 18 81 0.68 GTTTT chr1 6266163 6266206 trf 5 8.8 5 85 14 63 0 0 16 83 0.64 TTTTG chr1 6285645 6285691 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 6286543 6286582 trf 5 7.8 5 82 0 51 2 2 17 76 1.01 TTTTG chr1 6291175 6291227 trf 2 26.0 2 96 0 95 50 48 0 1 1.12 CA chr1 6303589 6303631 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 6305100 6305240 trf 2 69.5 2 88 4 210 1 52 0 46 1.09 TC chr1 6311275 6311300 trf 12 2.1 12 100 0 50 16 8 52 24 1.70 GGCTTAGGTGAG chr1 6312246 6312329 trf 4 20.8 4 89 0 121 0 68 0 31 0.90 TCCC chr1 6312788 6312844 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 6319196 6319221 trf 11 2.3 11 100 0 50 0 0 16 84 0.63 TTTTTTGTTTG chr1 6328012 6328112 trf 6 16.7 6 97 0 191 0 66 0 34 0.92 TCCCTC chr1 6329244 6329272 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 6330313 6330338 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 6332593 6332634 trf 5 8.2 5 100 0 82 0 0 19 80 0.71 TTTTG chr1 6333615 6333654 trf 1 39.0 1 84 0 51 0 7 0 92 0.39 T chr1 6343613 6343659 trf 3 15.3 3 81 0 56 43 0 56 0 0.99 AGG chr1 6343615 6343675 trf 9 6.8 9 78 1 59 45 0 55 0 0.99 GAGGAGGAA chr1 6345061 6345093 trf 3 10.7 3 100 0 64 34 0 0 65 0.93 TAT chr1 6348826 6348881 trf 3 19.7 3 82 14 64 0 0 23 76 0.79 TTG chr1 6349950 6349989 trf 2 19.5 2 94 0 69 0 0 46 53 1.00 TG chr1 6354452 6354567 trf 2 65.0 2 75 23 116 0 54 0 45 0.99 TC chr1 6354953 6354981 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 6356237 6356287 trf 5 10.2 5 95 4 93 0 0 20 80 0.72 TTGTT chr1 6357633 6357691 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 6358586 6358700 trf 4 28.8 4 92 1 194 49 0 24 25 1.56 ATAG chr1 6360584 6360649 trf 2 32.5 2 93 0 112 3 49 0 47 1.17 TC chr1 6371334 6371383 trf 2 24.5 2 100 0 98 51 0 0 48 1.00 AT chr1 6373882 6374021 trf 12 11.6 12 88 3 127 0 59 0 40 0.97 TCTCTCCCTCCC chr1 6373882 6373986 trf 4 26.0 4 96 0 154 0 55 0 44 0.99 TCTC chr1 6373925 6374021 trf 8 12.0 8 86 4 86 0 64 0 35 0.94 CTCCCTCC chr1 6373987 6374021 trf 4 8.5 4 86 0 50 0 70 0 29 0.87 CCCT chr1 6390676 6390711 trf 4 8.8 4 100 0 70 51 25 0 22 1.48 ACAT chr1 6391127 6391162 trf 4 8.8 4 100 0 70 0 25 22 51 1.48 TCTG chr1 6394100 6394138 trf 5 7.8 5 85 5 51 81 18 0 0 0.69 AAAAC chr1 6395813 6395896 trf 2 43.0 2 82 7 91 0 53 0 46 1.00 CT chr1 6415091 6415172 trf 2 40.5 2 89 0 126 0 44 4 50 1.23 TC chr1 6417479 6417517 trf 9 4.2 9 100 0 76 34 10 44 10 1.73 AGCTGGAGA chr1 6418412 6418447 trf 4 8.8 4 93 0 61 22 0 22 54 1.45 TATG chr1 6419197 6419422 trf 2 129.5 2 65 27 115 0 50 0 49 1.04 TC chr1 6421097 6421187 trf 4 22.8 4 89 5 139 0 26 0 73 0.84 TTTC chr1 6427091 6427117 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 AT chr1 6429061 6429123 trf 12 5.3 12 76 5 56 0 16 0 83 0.64 TTTTTTTTCTTT chr1 6441491 6441521 trf 11 2.7 11 94 0 51 13 26 60 0 1.34 AGGCGCGGGGC chr1 6442023 6442064 trf 3 14.0 3 94 5 75 68 31 0 0 0.90 AAC chr1 6445942 6445978 trf 5 7.2 5 87 12 56 19 0 0 80 0.71 TATTT chr1 6450085 6450121 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 6464562 6464614 trf 3 17.7 3 84 4 70 71 26 0 1 0.97 CAA chr1 6467446 6467496 trf 4 12.5 4 100 0 100 74 0 26 0 0.83 AGAA chr1 6467450 6467560 trf 8 13.8 8 93 0 103 60 0 38 0 1.03 AGAAAGAG chr1 6467450 6467567 trf 12 9.8 12 91 0 99 60 0 38 0 1.03 AGAAAGAGAGAG chr1 6467497 6467557 trf 2 30.0 2 93 0 102 51 1 46 0 1.10 GA chr1 6470120 6470162 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 6475445 6475502 trf 4 14.2 4 83 0 60 52 38 8 0 1.33 ACAC chr1 6478518 6478627 trf 4 27.2 4 90 0 173 0 69 0 29 0.94 TCCC chr1 6479037 6479070 trf 12 2.8 12 100 0 66 78 15 6 0 0.93 AAACAAAAAGCA chr1 6479131 6479171 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 6482736 6482784 trf 8 6.2 8 85 4 64 0 0 14 85 0.60 GTTTTTTT chr1 6482964 6482999 trf 12 2.9 12 86 0 52 0 57 0 42 0.99 CTCCTCCTCTTC chr1 6485834 6485900 trf 2 33.0 2 100 0 132 0 50 0 50 1.00 TC chr1 6489306 6489340 trf 4 8.5 4 100 0 68 52 47 0 0 1.00 AACC chr1 6497658 6497699 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 6500046 6500085 trf 10 4.1 10 83 12 55 12 0 35 51 1.40 TGTGTGTGTA chr1 6506974 6507028 trf 8 6.8 8 82 0 63 1 33 18 46 1.60 CTGTCTGC chr1 6507793 6507836 trf 1 43.0 1 90 0 59 0 0 6 93 0.37 T chr1 6509312 6509339 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 6518884 6518950 trf 6 11.7 6 84 12 95 83 16 0 0 0.65 AAAAAC chr1 6518885 6518950 trf 11 5.8 11 89 10 105 83 16 0 0 0.66 AAAACAAAAAC chr1 6519515 6519555 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 6520060 6520117 trf 5 11.0 5 88 7 78 73 26 0 0 0.83 AAAAC chr1 6525228 6525266 trf 4 9.5 4 100 0 76 76 23 0 0 0.79 AAAC chr1 6526055 6526102 trf 4 12.0 4 81 4 51 70 23 4 2 1.16 AAAC chr1 6529279 6529336 trf 7 8.0 7 76 18 55 80 0 7 12 0.89 AATAAAA chr1 6530047 6530122 trf 12 6.5 11 80 18 73 88 10 1 0 0.59 AAAAAAACAAA chr1 6530055 6530122 trf 1 67.0 1 81 0 71 89 10 0 0 0.48 A chr1 6537448 6537482 trf 8 4.2 8 92 0 59 26 0 0 73 0.83 TTTTTTAA chr1 6540015 6540164 trf 6 25.2 6 76 13 112 0 33 14 52 1.42 TCTGTC chr1 6540019 6540160 trf 10 14.3 10 79 8 119 0 34 13 52 1.41 TCTCTCTGTC chr1 6542151 6542201 trf 4 12.5 4 100 0 100 0 48 0 52 1.00 TTCC chr1 6544442 6544487 trf 8 5.5 8 86 5 63 8 2 42 46 1.47 TGTGTATG chr1 6549121 6549165 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 6555006 6555032 trf 12 2.2 12 100 0 52 7 23 0 69 1.14 TTTATTTCTTCC chr1 6557049 6557081 trf 11 2.8 12 90 9 50 0 12 0 87 0.54 TTTTCTTTTTTC chr1 6557049 6557082 trf 12 3.0 11 87 12 50 0 15 0 84 0.61 TTTTCTTTTTC chr1 6557206 6557283 trf 3 25.7 3 100 0 154 0 32 0 67 0.91 TTC chr1 6569805 6569840 trf 7 4.9 7 86 6 52 82 14 0 2 0.77 AAAAAAC chr1 6574487 6574516 trf 4 7.2 4 100 0 58 24 0 0 75 0.80 TATT chr1 6579056 6579090 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 6581898 6581934 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 AG chr1 6590673 6590753 trf 4 19.8 4 92 2 70 0 33 0 66 0.92 TCTT chr1 6591631 6591787 trf 5 31.2 5 96 0 114 0 44 8 46 1.38 TTCCT chr1 6591743 6591948 trf 10 20.7 10 84 4 164 0 66 0 32 0.99 CCTTCCCCTC chr1 6591743 6591967 trf 5 45.2 5 90 3 148 0 64 0 34 1.00 CCTTC chr1 6593350 6593375 trf 12 2.1 12 100 0 50 36 8 8 48 1.62 AGTTCTTTAATA chr1 6598473 6598501 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 6600090 6600128 trf 3 13.0 3 88 5 60 63 34 2 0 1.09 AAC chr1 6602516 6602546 trf 3 10.0 3 100 0 60 33 0 0 66 0.92 TAT chr1 6617538 6617578 trf 1 40.0 1 84 0 53 92 7 0 0 0.38 A chr1 6620618 6620715 trf 12 8.2 12 72 12 67 49 10 37 3 1.53 AGAGAGAGACAG chr1 6620648 6620715 trf 6 11.2 6 75 9 57 50 13 34 1 1.51 ACAGAG chr1 6633216 6633245 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 6635222 6635261 trf 4 9.8 4 88 0 60 48 0 51 0 1.00 AGGA chr1 6638326 6638380 trf 2 27.0 2 96 0 99 48 50 1 0 1.11 AC chr1 6638613 6638766 trf 2 77.5 2 85 2 211 50 4 45 0 1.22 GA chr1 6639021 6639050 trf 2 14.5 2 100 0 58 0 51 0 48 1.00 CT chr1 6652068 6652163 trf 4 24.2 4 84 4 77 63 10 1 25 1.33 AATA chr1 6652069 6652195 trf 8 16.4 8 85 9 111 58 11 0 29 1.38 ATAAATAC chr1 6652097 6652205 trf 12 9.4 12 77 9 82 52 14 1 30 1.52 ATACATACATAT chr1 6652162 6652274 trf 2 56.0 2 75 0 53 38 5 11 44 1.64 AT chr1 6662621 6662662 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 6669196 6669240 trf 8 5.5 8 80 0 52 29 34 20 15 1.94 CCAGGATC chr1 6669306 6669349 trf 8 5.4 8 85 0 59 34 27 23 13 1.93 CAGGATCA chr1 6671858 6671933 trf 5 15.0 5 86 5 107 1 20 0 78 0.82 CTTTT chr1 6674434 6674462 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 6679767 6679839 trf 2 36.0 2 94 0 126 2 0 47 50 1.15 GT chr1 6683321 6683346 trf 10 2.5 10 100 0 50 60 8 0 32 1.26 TAAATACATA chr1 6703480 6703522 trf 2 21.5 2 87 4 59 42 0 4 52 1.22 TA chr1 6706414 6706448 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 6713865 6713918 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 6718441 6718482 trf 2 20.5 2 89 0 64 46 2 2 48 1.28 TA chr1 6722601 6722667 trf 5 13.2 5 100 0 132 0 0 19 80 0.72 TGTTT chr1 6723475 6723584 trf 4 27.2 4 96 0 137 0 57 0 42 0.98 TCTC chr1 6723583 6723622 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 6734368 6734402 trf 3 11.3 3 100 0 68 0 0 32 67 0.91 TTG chr1 6736981 6737026 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 6745471 6745520 trf 4 12.2 4 95 0 53 0 10 24 65 1.23 TGTT chr1 6747358 6747430 trf 5 14.8 5 84 5 76 0 0 30 69 0.89 TTTGG chr1 6749208 6749236 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 6764961 6765143 trf 3 62.3 3 83 7 225 2 64 0 32 1.07 TCC chr1 6766468 6766494 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 6770842 6770906 trf 4 15.8 4 81 3 74 4 45 1 48 1.32 CTTC chr1 6775545 6775601 trf 2 28.0 2 92 0 94 1 1 46 50 1.22 GT chr1 6777836 6777895 trf 2 29.5 2 96 0 109 50 47 0 1 1.11 AC chr1 6784914 6784950 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 6790828 6790884 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 6790888 6790928 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 6798039 6798183 trf 4 36.2 4 97 1 209 69 0 30 0 0.89 AAAG chr1 6798412 6798470 trf 4 14.8 4 96 3 109 48 0 25 25 1.52 GATA chr1 6801318 6801381 trf 4 15.8 4 89 0 99 49 22 1 26 1.59 ACAT chr1 6802047 6802090 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 6807194 6807224 trf 12 2.5 12 94 0 51 0 23 3 73 0.98 TTCTTTCTTTTC chr1 6825896 6825928 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 6831348 6831427 trf 2 39.5 2 74 0 68 55 0 39 5 1.22 AG chr1 6832130 6832175 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 6834579 6834707 trf 12 10.8 12 65 20 54 23 0 51 24 1.53 AGTGAGTAGGTG chr1 6834616 6834682 trf 4 16.8 4 81 6 73 24 0 51 24 1.48 GTGA chr1 6841932 6841985 trf 10 5.3 10 84 8 63 1 67 0 30 1.01 TCCTCCCCTC chr1 6841932 6841985 trf 5 10.6 5 88 8 54 1 67 0 30 1.01 TCCTC chr1 6852353 6852483 trf 12 10.6 12 86 7 64 43 0 56 0 0.99 GAAAGAAGGGAG chr1 6852370 6852421 trf 4 12.8 4 91 0 84 29 0 70 0 0.87 AGGG chr1 6852374 6852473 trf 12 8.2 12 94 0 99 40 0 59 0 0.97 AGGGAGGGAGGA chr1 6852418 6852479 trf 4 15.2 4 100 0 122 50 0 49 0 1.00 AGGA chr1 6854291 6854323 trf 4 7.8 4 96 3 55 0 0 21 78 0.76 TTTG chr1 6856364 6856397 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 6858277 6858318 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 6859762 6859839 trf 10 7.7 10 79 0 55 46 38 5 9 1.58 ACACACACAC chr1 6859762 6859839 trf 6 12.8 6 76 0 55 46 38 5 9 1.58 ACACAC chr1 6859762 6859839 trf 4 19.2 4 73 0 55 46 38 5 9 1.58 ACAC chr1 6859791 6859835 trf 10 4.4 10 85 0 61 47 40 4 6 1.50 CACATACACA chr1 6865913 6865951 trf 5 7.8 5 88 11 53 84 15 0 0 0.63 AAAAC chr1 6869419 6869523 trf 6 17.3 6 74 20 58 30 1 22 45 1.63 ATGTAT chr1 6869419 6869481 trf 12 5.2 12 92 0 79 29 1 27 41 1.65 ATGTTGATGTAT chr1 6869419 6869478 trf 6 9.8 6 77 0 64 28 1 28 40 1.66 ATGTAG chr1 6870751 6870787 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 6872190 6872258 trf 2 34.5 2 97 2 129 50 0 50 0 1.00 GA chr1 6876057 6876085 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 6876395 6876439 trf 4 11.0 4 100 0 88 0 25 0 75 0.81 TTTC chr1 6876753 6876787 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 6877579 6877622 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 6877625 6877675 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 6883394 6883424 trf 10 3.1 10 95 4 53 50 20 10 20 1.76 ATCCAGTAAA chr1 6889360 6889411 trf 4 13.0 4 87 4 77 25 0 50 23 1.49 GATG chr1 6891737 6891777 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 GA chr1 6897316 6897366 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 TA chr1 6901972 6902014 trf 8 5.1 8 78 16 50 0 0 16 83 0.65 TTTTTTGT chr1 6901974 6902022 trf 12 3.6 14 81 18 59 0 0 18 81 0.70 TTTTGTTTTGTTTG chr1 6911177 6911214 trf 12 3.2 12 88 3 58 48 0 35 16 1.46 GAAGAAGATGAT chr1 6914224 6914250 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 6930490 6930527 trf 8 4.6 8 96 0 65 0 0 13 86 0.57 TTTTTGTT chr1 6933092 6933146 trf 4 13.5 4 96 0 99 74 0 25 0 0.83 AAAG chr1 6933145 6933198 trf 4 13.2 4 100 0 106 26 0 73 0 0.83 AGGG chr1 6933200 6933273 trf 4 18.2 4 97 0 137 72 0 27 0 0.85 GAAA chr1 6933588 6933825 trf 6 40.2 6 92 3 356 20 15 63 0 1.30 GGGGCA chr1 6933982 6934182 trf 5 40.0 5 98 0 256 52 0 48 0 1.00 AGAGA chr1 6938051 6938097 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 6938365 6938404 trf 12 3.2 12 81 0 51 48 33 0 17 1.48 ACACACATACAT chr1 6938917 6938965 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 6945530 6945555 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 6950850 6950934 trf 8 10.1 8 71 16 64 1 1 17 79 0.86 TTGTTTTT chr1 6954437 6954564 trf 2 67.0 2 72 13 81 41 4 5 48 1.47 TA chr1 6956315 6956350 trf 4 8.8 4 100 0 70 25 0 0 74 0.82 ATTT chr1 6958876 6958916 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 6961640 6961683 trf 7 6.1 7 89 10 61 86 2 11 0 0.67 AAGAAAA chr1 6969237 6969285 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 6970339 6970400 trf 2 30.5 2 100 0 122 50 0 49 0 1.00 AG chr1 6970398 6970526 trf 4 32.0 4 98 0 121 61 0 38 0 0.96 GAAG chr1 6970399 6970530 trf 8 16.4 8 95 0 136 62 0 37 0 0.95 AAGGAAGA chr1 6970443 6970531 trf 4 22.0 4 97 0 131 69 0 30 0 0.89 AAGA chr1 6974318 6974390 trf 2 36.0 2 94 0 126 47 0 52 0 1.00 AG chr1 6981429 6981476 trf 2 23.5 2 82 0 58 0 6 40 53 1.27 TG chr1 6981431 6981498 trf 8 8.4 8 82 12 75 1 11 35 50 1.48 TGTGTGTC chr1 6982600 6982653 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 6985747 6985778 trf 4 7.8 4 100 0 62 51 22 0 25 1.48 AATC chr1 6988721 6988996 trf 9 30.8 9 99 0 536 0 43 0 56 0.99 CTTTCTTCC chr1 6991056 6991102 trf 6 7.5 6 90 4 74 80 19 0 0 0.71 AAAAAC chr1 6999758 6999833 trf 4 18.8 4 97 0 141 0 48 0 52 1.00 CTTC chr1 6999814 6999890 trf 4 19.0 4 94 0 71 0 36 0 63 0.95 CTTT chr1 6999837 6999864 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 7000337 7000362 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 AATA chr1 7002352 7002434 trf 4 20.5 4 97 0 110 43 0 56 0 0.99 AAGG chr1 7002436 7002469 trf 2 16.5 2 100 0 66 48 0 51 0 1.00 GA chr1 7002892 7002981 trf 4 22.2 4 88 0 133 51 21 0 26 1.48 ATAC chr1 7004283 7004322 trf 5 7.8 5 83 11 53 82 17 0 0 0.68 AAAAC chr1 7004792 7004832 trf 2 20.5 2 89 5 64 50 47 0 2 1.14 AC chr1 7005828 7005885 trf 3 19.0 3 100 0 114 0 0 33 66 0.92 TGT chr1 7006806 7006833 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 7006963 7007009 trf 4 11.5 4 100 0 92 76 0 23 0 0.79 AAAG chr1 7007467 7007604 trf 5 28.4 5 88 6 203 0 37 0 62 0.96 TTCTC chr1 7008688 7008766 trf 4 19.8 4 96 2 140 76 1 21 0 0.85 AAAG chr1 7010116 7010202 trf 4 21.5 4 92 0 91 67 0 32 0 0.91 AAAG chr1 7010150 7010181 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 7016966 7017036 trf 2 35.5 2 94 2 124 52 47 0 0 1.00 AC chr1 7017060 7017092 trf 9 3.6 9 91 0 55 0 46 0 53 1.00 TTCCTCTTC chr1 7018591 7018644 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 7022855 7022880 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 7022879 7022936 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 7023311 7023411 trf 3 33.3 3 100 0 200 0 34 0 66 0.92 CTT chr1 7025015 7025057 trf 12 3.5 12 86 0 57 57 42 0 0 0.99 AACCAACCAAAC chr1 7029275 7029300 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 7029314 7029361 trf 5 9.6 5 86 13 71 80 19 0 0 0.70 AAAAC chr1 7030882 7030937 trf 4 14.2 4 83 7 69 3 23 23 49 1.66 TGTC chr1 7032393 7032433 trf 7 5.4 7 90 3 53 85 12 2 0 0.71 AAAAACA chr1 7032393 7032446 trf 8 6.6 8 83 12 65 84 13 1 0 0.69 AAAAACAA chr1 7032755 7032802 trf 4 11.8 4 100 0 94 74 0 0 25 0.82 AATA chr1 7032983 7033014 trf 8 4.0 8 91 8 55 87 12 0 0 0.55 ACAAAAAA chr1 7032986 7033016 trf 7 4.1 7 95 4 51 86 13 0 0 0.57 AAAAAAC chr1 7033029 7033135 trf 4 27.5 4 89 7 139 48 3 25 22 1.67 TAGA chr1 7034893 7034927 trf 12 2.6 13 90 9 52 88 0 11 0 0.52 AAAAAAAAGAAAG chr1 7035492 7035531 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 7035535 7035570 trf 2 17.5 2 100 0 70 48 0 51 0 1.00 GA chr1 7038647 7038700 trf 3 17.3 3 96 3 97 67 0 0 32 0.91 ATA chr1 7038725 7038761 trf 4 9.0 4 100 0 72 75 0 0 25 0.81 TAAA chr1 7039464 7039497 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 7039496 7039595 trf 2 49.5 2 95 0 126 8 0 41 50 1.32 TG chr1 7044633 7044747 trf 4 29.0 4 85 7 162 73 0 24 0 0.94 AAAG chr1 7046293 7046335 trf 4 10.5 4 100 0 84 76 0 0 23 0.79 AAAT chr1 7047890 7047917 trf 5 5.4 5 100 0 54 59 0 0 40 0.98 TAATA chr1 7068378 7068404 trf 7 3.7 7 100 0 52 11 88 0 0 0.52 CCCCCCA chr1 7068617 7068694 trf 4 18.8 4 72 9 57 1 27 24 46 1.60 TGTC chr1 7069208 7069246 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 7071017 7071053 trf 3 12.0 3 100 0 72 33 0 0 66 0.92 TTA chr1 7093411 7093466 trf 2 27.5 2 96 0 101 52 47 0 0 1.00 AC chr1 7094940 7094969 trf 12 2.4 12 100 0 58 75 6 10 6 1.17 GAAAAATCAAAA chr1 7097339 7097370 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 7098101 7098127 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 7099388 7099415 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 7099598 7099633 trf 12 2.9 12 86 0 52 8 14 25 51 1.70 TTCTATGTGTGC chr1 7099737 7099799 trf 2 30.5 2 86 3 88 3 1 43 51 1.27 TG chr1 7105611 7105711 trf 4 24.8 4 90 5 148 0 25 2 73 0.94 TTTC chr1 7107691 7107723 trf 3 10.7 3 93 0 55 65 0 3 31 1.08 AAT chr1 7109117 7109170 trf 8 6.6 8 86 0 70 3 0 45 50 1.19 TGTGTGTG chr1 7109117 7109170 trf 10 5.3 10 90 0 70 3 0 45 50 1.19 TGTGTGTGTG chr1 7109117 7109170 trf 6 8.8 6 89 0 70 3 0 45 50 1.19 TGTGTG chr1 7112579 7112635 trf 4 14.0 4 100 0 112 0 75 0 25 0.81 TCCC chr1 7112642 7112707 trf 4 16.2 4 100 0 130 0 24 0 75 0.81 TCTT chr1 7116408 7116434 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 7118782 7119219 trf 2 224.5 2 80 5 493 46 45 0 7 1.31 AC chr1 7119794 7119820 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 7123651 7123683 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 7123694 7123724 trf 2 15.0 2 100 0 60 50 0 50 0 1.00 AG chr1 7124187 7124219 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 7135067 7135135 trf 5 14.6 5 85 11 65 0 32 0 67 0.91 TTCTC chr1 7138898 7138982 trf 6 14.0 6 98 0 159 1 65 0 33 1.00 CCTCTC chr1 7139014 7139055 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 7141909 7141956 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 7144275 7144301 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 7150538 7150563 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TGCT chr1 7150560 7150615 trf 4 13.8 4 96 0 101 0 47 0 52 1.00 CTTC chr1 7151579 7151625 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 7152236 7152268 trf 3 10.7 3 100 0 64 0 0 34 65 0.93 GTT chr1 7157422 7157466 trf 7 6.6 7 84 10 56 0 0 20 79 0.73 TTTTGGT chr1 7164236 7164335 trf 5 19.8 5 100 0 198 0 40 0 59 0.97 TCTCT chr1 7165628 7165674 trf 11 4.1 12 91 8 62 0 0 17 82 0.67 TGGTTTTTGTTT chr1 7165631 7165675 trf 6 7.7 6 87 7 65 0 0 13 86 0.57 TTTTGT chr1 7168317 7168395 trf 10 7.9 10 68 12 54 8 28 15 47 1.75 CTGCTGATCT chr1 7187917 7187975 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 7196820 7196865 trf 1 45.0 1 100 0 90 100 0 0 0 0.00 A chr1 7202877 7202915 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 7207143 7207217 trf 3 24.7 3 97 0 139 0 68 0 31 0.89 CCT chr1 7215814 7215847 trf 8 4.0 8 92 7 57 0 0 15 84 0.61 GTTTTTTT chr1 7215815 7215848 trf 9 3.8 9 88 4 50 0 0 12 87 0.53 TTTTTTTGT chr1 7215915 7215959 trf 8 5.6 8 81 2 54 0 0 15 84 0.63 TTTTTGTT chr1 7217579 7217608 trf 2 14.5 2 100 0 58 0 51 0 48 1.00 CT chr1 7219810 7219843 trf 2 16.5 2 93 0 57 48 48 0 3 1.17 AC chr1 7226220 7226316 trf 6 16.0 6 94 0 84 23 16 58 1 1.45 GGCAGA chr1 7226232 7226309 trf 12 6.4 12 96 0 136 19 16 63 0 1.31 GGCAGGGGCAGG chr1 7227369 7227397 trf 5 5.6 5 100 0 56 82 0 0 17 0.68 AAATA chr1 7228979 7229004 trf 11 2.3 11 100 0 50 24 16 8 52 1.70 TTTCTTAGACA chr1 7247750 7247799 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 7247873 7247933 trf 10 6.1 10 76 1 50 45 11 6 36 1.67 ATATATACAT chr1 7255744 7255807 trf 10 6.2 10 75 12 58 0 3 14 82 0.79 TTGTTTTTTT chr1 7255744 7255806 trf 9 6.2 10 75 18 51 0 3 14 82 0.80 TTGTTTTGTT chr1 7255744 7255806 trf 5 12.4 5 76 20 51 0 3 14 82 0.80 TTGTT chr1 7255744 7255808 trf 7 9.0 7 75 14 60 0 3 14 82 0.78 TTGTTTT chr1 7255966 7256007 trf 5 8.4 5 97 2 75 0 0 17 82 0.66 TTTTG chr1 7260016 7260045 trf 3 9.7 3 100 0 58 34 0 0 65 0.93 TAT chr1 7264409 7264434 trf 12 2.1 12 100 0 50 52 24 0 24 1.48 ATACTAATAACC chr1 7269877 7269902 trf 12 2.1 12 100 0 50 40 28 0 32 1.57 CCTAACTAATTA chr1 7269941 7269983 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 7278931 7278960 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 7289514 7289544 trf 3 10.0 3 92 0 51 63 33 0 3 1.11 CAA chr1 7295420 7295457 trf 4 9.2 4 88 11 58 78 0 0 21 0.75 AAAT chr1 7300042 7300082 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 7305755 7305783 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 7310630 7310720 trf 2 45.0 2 88 4 137 47 3 48 0 1.18 GA chr1 7312334 7312382 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 7314410 7314446 trf 2 18.0 2 94 0 63 0 2 47 50 1.15 GT chr1 7317648 7317683 trf 2 17.5 2 100 0 70 48 0 0 51 1.00 TA chr1 7321213 7321260 trf 10 4.7 10 91 0 76 8 0 42 48 1.33 TGTGTGTATG chr1 7321213 7321260 trf 2 23.5 2 82 0 58 8 0 42 48 1.33 TG chr1 7321512 7321630 trf 4 29.5 4 98 0 227 0 49 0 50 1.00 CTTC chr1 7321627 7321674 trf 4 11.8 4 100 0 94 0 74 0 25 0.82 CCTC chr1 7321673 7321734 trf 4 15.2 4 100 0 122 0 24 0 75 0.80 TTCT chr1 7322707 7322756 trf 6 8.2 6 97 0 89 0 65 0 34 0.93 CCCTTC chr1 7322749 7322826 trf 4 19.2 4 97 0 145 0 74 0 25 0.83 CCCT chr1 7322842 7322906 trf 4 16.0 4 100 0 128 0 25 0 75 0.81 TCTT chr1 7326837 7326874 trf 8 4.6 8 86 0 56 8 29 27 35 1.85 TCCTGTGA chr1 7328661 7328690 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 7338562 7338615 trf 2 26.0 2 96 3 97 49 0 49 1 1.12 GA chr1 7344648 7344701 trf 2 27.0 2 90 3 81 3 0 45 50 1.19 TG chr1 7346786 7346820 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 7348275 7348329 trf 4 13.5 4 100 0 108 0 74 0 25 0.83 CTCC chr1 7348328 7348501 trf 4 42.5 4 91 3 157 0 35 0 64 0.94 TTCT chr1 7348501 7348547 trf 2 23.0 2 81 0 56 4 47 2 45 1.34 TC chr1 7348546 7348631 trf 2 42.5 2 92 0 143 49 47 3 0 1.18 CA chr1 7348845 7348885 trf 12 3.3 12 82 0 53 25 7 2 65 1.32 TTTATTTATCTA chr1 7355962 7356026 trf 2 32.0 2 90 6 103 48 48 1 1 1.20 AC chr1 7364231 7364266 trf 3 11.7 3 93 0 61 71 28 0 0 0.86 AAC chr1 7369827 7369878 trf 5 10.2 5 100 0 102 0 0 39 60 0.97 TTGGT chr1 7370252 7370289 trf 4 9.2 4 100 0 74 24 24 0 51 1.49 TCTA chr1 7371349 7371388 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 7374195 7374220 trf 5 5.0 5 100 0 50 80 20 0 0 0.72 AAAAC chr1 7377600 7377675 trf 4 18.8 4 83 0 87 53 6 40 0 1.27 AGAG chr1 7377600 7377675 trf 6 12.5 6 86 0 87 53 6 40 0 1.27 AGAGAG chr1 7378664 7378694 trf 4 7.8 4 92 7 53 0 0 20 80 0.72 TTTG chr1 7379031 7379059 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 7379309 7379334 trf 6 4.2 6 100 0 50 52 0 48 0 1.00 AGGAGA chr1 7382934 7382967 trf 2 16.5 2 93 0 57 3 0 45 51 1.16 TG chr1 7382936 7382975 trf 8 4.9 8 93 0 51 5 0 41 53 1.23 TGTGTGTA chr1 7384156 7384198 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 7385469 7385551 trf 7 11.3 7 70 20 53 76 21 0 1 0.85 AAAAACA chr1 7385472 7385559 trf 3 30.7 3 76 21 57 75 22 0 1 0.86 AAC chr1 7386147 7386177 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 7386351 7386455 trf 2 53.5 2 89 5 160 52 0 47 0 1.00 AG chr1 7389380 7389428 trf 9 5.2 9 76 14 53 56 29 0 14 1.39 AAAACCCTA chr1 7389816 7389843 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 7390214 7390283 trf 7 10.8 6 75 18 52 81 17 1 0 0.77 AAAAAC chr1 7390222 7390275 trf 5 10.8 5 80 11 65 81 18 0 0 0.70 AAAAC chr1 7390524 7390557 trf 5 6.8 5 86 6 50 78 18 3 0 0.87 AAAAC chr1 7392177 7392206 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 7392362 7392394 trf 4 8.0 4 100 0 64 75 25 0 0 0.81 AAAC chr1 7393781 7393812 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 7394039 7394089 trf 1 50.0 1 83 0 64 92 0 8 0 0.40 A chr1 7394462 7394651 trf 12 15.9 12 72 8 100 48 13 1 37 1.52 ATATATACATAT chr1 7394464 7394651 trf 6 31.5 6 67 13 75 48 13 1 36 1.52 ATATAC chr1 7394723 7394756 trf 12 2.8 12 90 4 50 39 0 9 51 1.34 TATATATATATG chr1 7396974 7397019 trf 12 3.8 11 83 13 54 82 15 2 0 0.77 CAAAAAAAAAA chr1 7397120 7397160 trf 4 10.2 4 83 5 55 75 25 0 0 0.81 CAAA chr1 7397360 7397401 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 7399994 7400022 trf 4 7.0 4 100 0 56 25 0 0 75 0.81 TATT chr1 7400246 7400294 trf 2 24.0 2 95 0 87 52 47 0 0 1.00 AC chr1 7400994 7401021 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 7401259 7401297 trf 2 19.5 2 94 5 69 0 0 52 47 1.00 GT chr1 7406068 7406123 trf 2 27.5 2 96 0 101 1 0 49 49 1.11 GT chr1 7408878 7408916 trf 4 9.5 4 88 11 60 76 23 0 0 0.79 CAAA chr1 7409003 7409063 trf 2 30.0 2 96 0 111 51 48 0 0 1.00 CA chr1 7409237 7409281 trf 5 8.8 5 100 0 88 81 18 0 0 0.68 AAAAC chr1 7410964 7411088 trf 3 40.0 3 90 9 196 31 0 68 0 0.90 AGG chr1 7414545 7414603 trf 2 29.0 2 96 0 107 1 0 50 48 1.11 GT chr1 7415148 7415194 trf 2 23.0 2 90 0 74 4 0 47 47 1.21 GT chr1 7415406 7415534 trf 6 21.3 6 98 0 247 0 66 0 32 0.97 CCCTCT chr1 7420598 7420632 trf 4 8.8 4 87 6 52 52 20 0 26 1.46 ACAT chr1 7421872 7421915 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 7425277 7425323 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 7426729 7426778 trf 2 24.5 2 100 0 98 48 0 0 51 1.00 TA chr1 7435027 7435071 trf 12 3.2 14 84 15 65 86 13 0 0 0.57 AAAAAAACAAAAAC chr1 7435028 7435071 trf 7 6.4 7 84 15 56 86 13 0 0 0.58 AAAAAAC chr1 7435029 7435071 trf 6 6.5 6 91 8 57 85 14 0 0 0.59 AAAAAC chr1 7447331 7447358 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 7449578 7449651 trf 6 12.5 6 81 5 69 0 39 10 49 1.38 TCTGTC chr1 7450711 7450770 trf 2 29.5 2 100 0 118 0 49 0 50 1.00 TC chr1 7461207 7461233 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 7468037 7468116 trf 4 19.8 4 100 0 158 0 24 0 75 0.80 TTTC chr1 7468794 7468866 trf 6 12.5 6 72 11 53 76 19 0 4 0.95 AAAAAC chr1 7468801 7468866 trf 5 12.6 5 73 16 53 75 21 0 3 0.94 AAAAC chr1 7469325 7469376 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 7469375 7469415 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 7475065 7475127 trf 12 5.4 11 76 16 63 0 1 16 82 0.75 TTTTTTGTTTG chr1 7475067 7475117 trf 5 9.8 5 79 12 57 0 2 18 80 0.82 TTTTG chr1 7476536 7476590 trf 1 54.0 1 81 0 63 0 1 7 90 0.51 T chr1 7482107 7482143 trf 7 5.0 7 96 3 63 0 0 16 83 0.65 TTTTTTG chr1 7492197 7492291 trf 6 15.7 6 93 0 152 50 4 45 0 1.21 GAGAGA chr1 7495345 7495433 trf 12 7.3 12 88 0 95 0 50 2 47 1.13 TCTCTCTCCCTC chr1 7495345 7495422 trf 2 38.5 2 92 0 127 0 48 2 49 1.15 TC chr1 7500167 7500193 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 AT chr1 7504326 7504361 trf 8 4.4 8 85 0 52 37 28 22 11 1.89 CAGGATCA chr1 7505763 7505799 trf 11 3.2 11 88 4 54 25 13 0 61 1.33 TTATTCCTATA chr1 7512535 7512568 trf 12 2.6 13 85 9 50 87 0 9 3 0.63 AAAAGAAAAAAAA chr1 7514581 7514805 trf 4 55.5 4 94 1 313 0 31 0 68 0.90 TTCT chr1 7518437 7518481 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 7522567 7522620 trf 2 26.5 2 100 0 106 49 0 0 50 1.00 TA chr1 7522979 7523027 trf 8 6.1 8 90 2 71 0 27 8 64 1.22 TCTTGCTT chr1 7524308 7524334 trf 5 5.2 5 100 0 52 76 0 0 23 0.78 TAAAA chr1 7533016 7533059 trf 11 3.8 12 78 9 54 0 2 16 81 0.79 TTTGTTTTTGTT chr1 7533016 7533059 trf 6 7.5 6 82 10 54 0 2 16 81 0.79 TTTGTT chr1 7534787 7534868 trf 3 27.3 3 94 2 146 30 0 0 69 0.89 TTA chr1 7536173 7536220 trf 1 47.0 1 100 0 94 0 0 0 100 0.00 T chr1 7547631 7547658 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 7549820 7549897 trf 2 38.5 2 100 0 154 50 0 49 0 1.00 AG chr1 7550711 7550779 trf 8 8.8 8 75 15 54 0 0 19 80 0.70 TTTTTTGT chr1 7550730 7550777 trf 6 7.5 6 86 9 67 0 0 19 80 0.70 TTTGTT chr1 7551592 7551789 trf 6 33.3 6 76 13 70 39 2 57 1 1.19 GAGAGA chr1 7554805 7554849 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 TATT chr1 7556962 7557003 trf 8 5.2 8 88 2 57 14 24 21 39 1.91 CTGTGATC chr1 7559126 7559157 trf 7 4.4 7 100 0 62 25 0 29 45 1.54 GTTAATG chr1 7560602 7560663 trf 2 31.0 2 93 3 106 0 49 0 50 1.00 TC chr1 7560662 7560704 trf 2 21.0 2 95 0 75 50 47 0 2 1.14 CA chr1 7579477 7579535 trf 4 15.5 4 81 16 63 81 18 0 0 0.70 CAAA chr1 7589995 7590048 trf 4 13.2 4 81 15 65 24 1 24 49 1.61 TGTA chr1 7592238 7592295 trf 10 5.4 10 82 15 62 63 0 0 36 0.95 TATAAATAAA chr1 7592243 7592291 trf 6 8.5 6 82 13 66 64 0 0 35 0.94 ATAAAT chr1 7604713 7604774 trf 2 30.5 2 89 0 95 50 44 1 3 1.28 AC chr1 7609299 7609325 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 7624736 7624766 trf 3 10.0 3 100 0 60 66 33 0 0 0.92 CAA chr1 7626163 7626210 trf 1 47.0 1 100 0 94 0 0 0 100 0.00 T chr1 7630403 7630452 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 7632050 7632088 trf 5 7.8 5 86 13 53 84 13 0 2 0.73 AAAAC chr1 7632829 7632860 trf 4 7.8 4 100 0 62 0 48 0 51 1.00 CTTC chr1 7632857 7632922 trf 4 16.2 4 100 0 130 0 26 0 73 0.83 CTTT chr1 7633358 7633397 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 7642238 7642270 trf 3 11.0 3 93 6 57 68 31 0 0 0.90 ACA chr1 7649461 7649494 trf 2 17.0 2 87 6 50 51 0 48 0 1.00 GA chr1 7668262 7668302 trf 2 20.5 2 89 5 64 47 0 52 0 1.00 GA chr1 7668377 7668631 trf 5 50.6 5 81 15 165 31 0 68 0 0.90 GAGAG chr1 7669518 7669561 trf 2 21.5 2 90 0 68 2 0 44 53 1.13 TG chr1 7675396 7675466 trf 4 17.5 4 100 0 140 0 50 0 50 1.00 CTTC chr1 7675467 7676088 trf 4 153.5 4 87 4 422 0 38 0 61 1.01 TCTT chr1 7676112 7676210 trf 2 50.0 2 79 4 110 0 52 0 47 1.00 CT chr1 7683598 7683649 trf 5 10.2 5 91 0 57 7 1 19 70 1.21 TGTTT chr1 7691465 7691504 trf 8 4.9 8 87 0 60 10 25 38 25 1.87 TCCTGGGA chr1 7695615 7695668 trf 2 26.5 2 96 0 97 52 47 0 0 1.00 AC chr1 7708554 7708595 trf 2 20.5 2 100 0 82 48 0 0 51 1.00 TA chr1 7716519 7716554 trf 9 3.7 9 85 14 52 0 34 17 48 1.47 TCCTCTGTG chr1 7722885 7722924 trf 5 8.0 5 88 11 55 0 0 20 79 0.73 TTTTG chr1 7730026 7730159 trf 5 26.8 5 95 1 52 0 34 1 63 1.09 TCTTT chr1 7730061 7730308 trf 5 51.0 5 96 2 258 0 53 0 46 1.00 CTTCC chr1 7730318 7730391 trf 2 36.5 2 97 0 137 0 50 0 49 1.00 TC chr1 7731104 7731181 trf 8 9.9 8 77 16 63 57 0 41 1 1.07 GAAAGAGA chr1 7731107 7731168 trf 2 30.5 2 86 6 88 54 0 44 1 1.10 AG chr1 7731111 7731181 trf 10 7.4 10 81 10 76 57 0 41 1 1.08 AGAGAGAGAA chr1 7731591 7731640 trf 2 24.5 2 95 0 89 2 48 0 48 1.12 TC chr1 7736114 7736177 trf 4 16.0 4 90 3 56 0 41 9 49 1.35 TCTC chr1 7736376 7736446 trf 2 35.0 2 97 0 131 0 48 0 51 1.00 TC chr1 7742061 7742094 trf 3 11.3 3 93 6 59 0 0 69 30 0.88 GTG chr1 7745349 7745375 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 7745964 7746017 trf 1 53.0 1 88 0 79 94 0 5 0 0.31 A chr1 7746320 7746375 trf 6 9.8 6 76 11 55 16 0 0 83 0.64 TTTTTA chr1 7746332 7746381 trf 7 6.9 7 78 21 57 16 0 0 83 0.64 TTTATTT chr1 7750098 7750186 trf 4 22.5 4 77 14 87 3 2 17 77 1.01 TTGT chr1 7750103 7750194 trf 7 12.1 7 84 12 103 2 2 16 79 0.94 TTGTTTT chr1 7750574 7750642 trf 12 5.4 12 74 12 57 57 0 39 2 1.14 AGAAGGAAAAGG chr1 7750589 7750700 trf 6 19.3 6 69 18 58 52 0 45 1 1.11 AGAAGG chr1 7751602 7751648 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 7753196 7753232 trf 4 9.0 4 100 0 72 50 25 0 25 1.50 CATA chr1 7756598 7756644 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 TG chr1 7757085 7757134 trf 5 9.8 5 100 0 98 38 0 20 40 1.53 TAGTA chr1 7760278 7760372 trf 2 47.5 2 95 2 172 0 48 0 51 1.00 TC chr1 7770813 7770947 trf 2 68.0 2 80 11 143 48 0 47 4 1.22 AG chr1 7771288 7771317 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TTTG chr1 7774571 7774644 trf 4 18.2 4 94 0 128 0 27 0 72 0.85 TCTT chr1 7774897 7774931 trf 5 6.8 5 100 0 68 58 0 41 0 0.98 GAGAA chr1 7775439 7775496 trf 2 28.5 2 96 0 105 49 49 0 1 1.11 AC chr1 7778041 7778172 trf 2 67.5 2 85 8 182 48 0 48 1 1.16 GA chr1 7779107 7779136 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 7779857 7779903 trf 2 23.0 2 90 0 74 54 0 45 0 0.99 AG chr1 7779897 7779937 trf 12 3.2 12 96 3 71 30 15 55 0 1.41 AGAGGCAGGGGC chr1 7779902 7779936 trf 6 5.7 6 85 0 50 23 17 58 0 1.38 GCAGGG chr1 7784471 7784558 trf 7 12.6 7 95 2 158 0 0 14 85 0.61 GTTTTTT chr1 7784472 7784554 trf 1 82.0 1 72 0 65 0 0 13 86 0.57 T chr1 7802884 7802928 trf 12 3.7 12 91 8 72 0 6 0 93 0.36 TTTTTTTTTCTT chr1 7802884 7802928 trf 1 44.0 1 86 0 61 0 6 0 93 0.36 T chr1 7806179 7806230 trf 8 6.0 8 76 19 50 0 0 17 82 0.67 TTGTTTTT chr1 7806182 7806230 trf 6 7.7 6 78 17 53 0 0 16 83 0.65 TTTTGT chr1 7820705 7820813 trf 8 13.2 8 83 11 103 1 44 6 47 1.39 CTCTGTCT chr1 7820723 7820813 trf 6 15.0 6 88 0 126 1 44 5 48 1.33 CTCTCT chr1 7820812 7820850 trf 2 19.0 2 94 0 67 0 0 47 52 1.00 TG chr1 7857326 7857371 trf 11 4.0 11 80 5 54 4 0 11 84 0.76 TTTTGTTTTTT chr1 7857368 7857396 trf 5 5.6 5 100 0 56 35 0 0 64 0.94 TTTAA chr1 7867465 7867534 trf 3 23.7 3 88 5 106 71 27 0 1 0.95 AAC chr1 7875146 7875181 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 7880785 7880886 trf 4 25.8 4 89 7 109 18 26 5 48 1.71 TCTA chr1 7883785 7883810 trf 4 6.2 4 100 0 50 28 0 0 72 0.86 ATTT chr1 7887165 7887217 trf 12 4.5 12 90 4 72 0 0 15 84 0.62 TTTTTTTGTTTG chr1 7887169 7887204 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 7891092 7891130 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 7892335 7892443 trf 5 21.8 5 94 1 173 0 23 0 76 0.78 CTTTT chr1 7902276 7902312 trf 8 4.5 8 100 0 72 0 38 11 50 1.38 CTCTCTTG chr1 7902436 7902560 trf 2 62.0 2 88 0 176 0 43 4 51 1.23 TC chr1 7902873 7902900 trf 11 2.5 11 100 0 54 0 55 0 44 0.99 TTCCCCCTTCT chr1 7904295 7904336 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 7905916 7905976 trf 3 19.3 3 93 6 102 33 0 0 66 0.92 TAT chr1 7909298 7909420 trf 4 31.2 4 83 8 153 27 26 0 46 1.53 TCTA chr1 7911686 7911731 trf 4 11.2 4 85 0 63 71 22 6 0 1.09 AAAC chr1 7926985 7927019 trf 5 6.8 5 100 0 68 79 20 0 0 0.73 CAAAA chr1 7927265 7927290 trf 12 2.1 12 100 0 50 80 20 0 0 0.72 CAAAACAAAAAA chr1 7927406 7927469 trf 2 31.5 2 93 0 108 52 46 0 1 1.10 AC chr1 7936162 7936309 trf 4 37.8 4 86 5 203 22 23 3 51 1.63 TCTA chr1 7937011 7937063 trf 8 6.2 8 73 8 50 38 1 13 46 1.54 ATATATGT chr1 7937513 7937567 trf 2 27.0 2 100 0 108 0 0 50 50 1.00 GT chr1 7939290 7939339 trf 12 4.1 12 78 0 62 46 36 2 14 1.56 ACACACACACAT chr1 7939724 7939777 trf 2 26.5 2 100 0 106 0 49 0 50 1.00 TC chr1 7939776 7939815 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 7951982 7952045 trf 5 12.4 5 94 3 99 77 22 0 0 0.76 AACAA chr1 7952916 7952995 trf 12 6.8 11 72 16 54 53 0 43 3 1.19 AGAAGAGGAAG chr1 7967804 7967844 trf 5 8.8 5 82 17 52 85 15 0 0 0.61 AAAAC chr1 7967804 7967846 trf 9 4.7 9 82 11 59 85 14 0 0 0.59 AAAAAAAAC chr1 7969707 7969741 trf 4 8.0 4 90 9 50 73 0 0 26 0.83 TAAA chr1 7970842 7970899 trf 8 6.4 9 74 21 50 1 33 1 63 1.15 TTCCTTTCT chr1 7973377 7973449 trf 2 36.0 2 97 0 135 1 0 48 50 1.09 TG chr1 7973751 7973790 trf 12 3.2 12 88 3 51 23 5 23 48 1.70 GTATGCATGTAT chr1 7978554 7978590 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 7986820 7986855 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 7994544 7994570 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 8002507 8002573 trf 2 33.0 2 93 0 114 50 46 3 0 1.16 CA chr1 8002886 8003084 trf 6 33.0 6 95 4 364 1 65 0 33 0.99 CTCTCC chr1 8003091 8003130 trf 3 13.0 3 94 0 69 0 64 0 35 0.94 TCC chr1 8010246 8010343 trf 2 48.5 2 95 0 176 50 1 48 0 1.07 GA chr1 8012183 8012213 trf 4 7.5 4 92 0 51 70 26 3 0 1.03 ACAA chr1 8015048 8015093 trf 4 11.2 4 100 0 90 73 0 26 0 0.84 GAAA chr1 8015092 8015153 trf 4 15.2 4 100 0 122 24 0 75 0 0.80 GGAG chr1 8015150 8015184 trf 4 8.5 4 100 0 68 50 0 50 0 1.00 AGGA chr1 8015181 8015229 trf 4 12.0 4 100 0 96 75 0 25 0 0.81 AAGA chr1 8015589 8015635 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 8019992 8020021 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 8020021 8020250 trf 8 29.4 8 70 15 115 26 0 24 48 1.55 TGTATATG chr1 8020029 8020230 trf 6 34.2 6 75 9 92 27 0 23 48 1.55 TGTATA chr1 8039459 8039486 trf 4 6.8 4 100 0 54 51 22 0 25 1.48 ATAC chr1 8051750 8051808 trf 2 29.0 2 96 0 107 51 48 0 0 1.00 AC chr1 8063310 8063359 trf 2 24.5 2 100 0 98 0 51 0 48 1.00 CT chr1 8063358 8063386 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 8064445 8064477 trf 12 2.7 12 95 0 55 34 25 0 40 1.56 ATCATTATCATC chr1 8075747 8075799 trf 1 52.0 1 100 0 104 0 0 0 100 0.00 T chr1 8091039 8091087 trf 12 4.0 11 79 12 51 83 12 4 0 0.79 AAAAAAACAAA chr1 8091040 8091087 trf 7 6.4 7 77 18 51 82 12 4 0 0.80 AAAAAAC chr1 8091174 8091223 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 8092921 8093307 trf 9 42.9 9 92 0 412 0 43 0 56 0.99 TTCTTCTTC chr1 8092921 8093307 trf 6 64.3 6 91 0 412 0 43 0 56 0.99 TTCTTC chr1 8093458 8093483 trf 12 2.1 12 100 0 50 24 8 8 60 1.52 TATTTATGCTTA chr1 8095888 8095943 trf 2 27.5 2 100 0 110 0 0 49 50 1.00 TG chr1 8096443 8096486 trf 2 22.0 2 84 13 54 53 0 44 2 1.13 GA chr1 8097581 8097672 trf 5 18.2 5 77 8 96 72 0 2 25 0.96 ATAAA chr1 8099156 8099186 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 8101090 8101160 trf 2 36.0 2 77 5 63 1 42 4 51 1.30 CT chr1 8109395 8109425 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 8111388 8111423 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 8113653 8113688 trf 4 8.8 4 100 0 70 25 0 0 74 0.82 TATT chr1 8122476 8122534 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 8130170 8130211 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 8132816 8132849 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 8136803 8136865 trf 5 12.4 5 100 0 124 0 0 19 80 0.71 TTGTT chr1 8149814 8149861 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 8150656 8150739 trf 5 16.6 5 96 0 130 66 33 0 0 0.92 AAACC chr1 8152097 8152145 trf 4 12.0 4 100 0 96 25 0 0 75 0.81 TTTA chr1 8152141 8152176 trf 8 4.4 8 96 0 61 11 2 11 74 1.18 TTTATTGT chr1 8157042 8157068 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 8168489 8168549 trf 5 12.0 5 76 13 52 60 0 1 38 1.07 TAATA chr1 8168501 8168566 trf 3 22.7 3 71 20 50 60 0 0 40 0.97 AAT chr1 8169927 8169961 trf 4 8.5 4 93 0 50 76 5 0 17 0.98 AAAT chr1 8171869 8171941 trf 2 36.5 2 94 2 128 0 0 50 50 1.00 GT chr1 8172913 8172983 trf 10 7.4 9 73 17 54 1 28 1 68 1.06 CTTTCTTTT chr1 8175472 8175547 trf 2 37.5 2 97 0 141 50 1 0 48 1.09 AT chr1 8186004 8186029 trf 2 12.5 2 100 0 50 48 0 52 0 1.00 GA chr1 8204149 8204180 trf 4 8.0 4 92 7 55 77 22 0 0 0.77 AAAC chr1 8206794 8206819 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 8223405 8223454 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 8225635 8225672 trf 12 3.1 12 85 14 58 21 8 24 45 1.78 ATGTTCTGTAGT chr1 8228671 8228705 trf 12 3.1 11 91 8 52 0 8 0 91 0.43 TTTTCTTTTTT chr1 8230858 8230906 trf 1 48.0 1 91 0 60 91 8 0 0 0.41 A chr1 8235541 8235567 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 8235774 8235799 trf 9 2.8 9 100 0 50 0 8 0 92 0.40 TTTTTTTCT chr1 8241853 8241905 trf 10 5.3 10 84 11 63 0 0 13 86 0.57 TTTTTTTGTT chr1 8246953 8247027 trf 5 15.2 5 89 10 118 78 0 21 0 0.75 GAAAA chr1 8250697 8250723 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 8255895 8255929 trf 10 3.5 10 88 4 52 91 8 0 0 0.43 AAAAACAAAA chr1 8266248 8266304 trf 5 11.2 5 100 0 112 78 21 0 0 0.75 CAAAA chr1 8266614 8266655 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 8279678 8279778 trf 5 20.6 5 86 4 134 2 54 1 43 1.18 TCTCC chr1 8280900 8280929 trf 12 2.4 12 100 0 58 44 10 0 44 1.38 TAACATATTTAT chr1 8290479 8290545 trf 4 16.5 4 100 0 132 50 0 24 25 1.50 TAGA chr1 8290942 8291033 trf 3 30.3 3 100 0 182 0 32 0 67 0.91 TCT chr1 8298391 8298428 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 8303361 8303411 trf 4 12.5 4 100 0 100 74 0 0 26 0.83 ATAA chr1 8314867 8314976 trf 5 21.6 5 73 12 71 68 26 2 1 1.13 CAAAA chr1 8317502 8317559 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 8322540 8322667 trf 5 25.4 5 99 0 182 6 19 13 60 1.54 TTCTG chr1 8325885 8325924 trf 4 9.8 4 100 0 78 25 0 0 74 0.82 TATT chr1 8330088 8330126 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 AG chr1 8332123 8332162 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 8333430 8333473 trf 5 8.6 5 100 0 86 0 0 18 81 0.69 TTTGT chr1 8334957 8334984 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 8336280 8336330 trf 7 7.1 7 78 15 50 40 2 4 54 1.31 ATATTAT chr1 8336320 8336454 trf 6 24.5 6 71 18 114 31 1 18 48 1.57 TATAGT chr1 8337821 8337854 trf 11 2.8 12 86 13 50 36 48 0 15 1.45 CACACACACTCT chr1 8337966 8337996 trf 2 15.0 2 92 0 51 0 46 3 50 1.18 CT chr1 8338043 8338070 trf 11 2.5 11 100 0 54 14 37 11 37 1.82 TGCTCTCTACA chr1 8339826 8339863 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 8339979 8340029 trf 2 25.5 2 93 4 84 54 0 0 46 1.00 AT chr1 8345277 8345305 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 TTTG chr1 8352209 8352319 trf 7 15.4 7 88 11 170 0 0 15 84 0.62 TTTTTGT chr1 8352209 8352330 trf 1 121.0 1 68 0 71 0 0 15 84 0.63 T chr1 8353433 8353507 trf 5 15.0 5 81 14 66 4 2 16 77 1.04 TTTGT chr1 8353615 8353714 trf 1 99.0 1 83 0 126 0 8 0 91 0.41 T chr1 8356633 8356695 trf 7 8.7 7 98 1 115 0 0 16 83 0.64 TTTTGTT chr1 8366193 8366227 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 8366994 8367029 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 8371542 8371609 trf 4 16.8 4 100 0 134 76 0 23 0 0.79 AAAG chr1 8371606 8371638 trf 4 8.0 4 92 0 55 78 21 0 0 0.76 AAAC chr1 8378059 8378127 trf 5 14.0 5 96 3 106 0 17 0 82 0.67 CTTTT chr1 8389555 8389628 trf 4 18.2 4 97 0 101 24 31 0 43 1.54 TATC chr1 8389888 8389937 trf 4 12.5 4 95 4 91 26 24 0 48 1.51 ATCT chr1 8396774 8396800 trf 10 2.6 10 100 0 52 11 0 26 61 1.30 AGTTTTGTTG chr1 8397790 8397817 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 8406446 8406486 trf 4 9.8 4 84 15 55 75 25 0 0 0.81 AAAC chr1 8409175 8409212 trf 7 5.3 7 87 12 58 86 13 0 0 0.57 AAACAAA chr1 8418292 8418329 trf 4 9.2 4 100 0 74 0 0 24 75 0.80 TGTT chr1 8419360 8419430 trf 5 15.0 5 84 10 53 0 1 17 81 0.77 TTTTG chr1 8419404 8419429 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 8421314 8421419 trf 4 26.5 4 92 1 176 46 0 27 25 1.53 GATA chr1 8423082 8423108 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 AT chr1 8430411 8430460 trf 7 6.9 7 80 11 55 71 4 2 22 1.13 TAAAAAT chr1 8452693 8452737 trf 2 22.5 2 86 4 63 0 47 0 52 1.00 CT chr1 8453848 8454004 trf 10 15.8 10 77 10 117 0 41 8 50 1.33 TCTGTCTCTC chr1 8453856 8454004 trf 6 24.7 6 82 2 154 0 42 7 50 1.30 TCTCTC chr1 8453856 8454004 trf 8 18.5 8 82 2 154 0 42 7 50 1.30 TCTCTCTC chr1 8455027 8455107 trf 2 39.5 2 94 2 142 1 47 1 50 1.17 TC chr1 8456265 8456294 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 8456291 8456627 trf 6 56.0 6 95 2 379 58 0 41 0 0.98 AGAAGA chr1 8467783 8467836 trf 2 26.5 2 96 0 97 1 0 49 49 1.12 TG chr1 8470766 8470827 trf 2 30.5 2 100 0 122 0 50 0 49 1.00 CT chr1 8477178 8477304 trf 12 11.5 10 78 11 67 49 0 46 3 1.23 GAGAGAAGAG chr1 8477190 8477250 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 8477789 8477851 trf 10 6.4 10 81 7 74 51 8 38 1 1.41 GAGAGAGACA chr1 8477789 8477851 trf 2 31.0 2 81 0 61 51 8 38 1 1.41 GA chr1 8478311 8478392 trf 2 40.5 2 84 0 108 0 44 2 53 1.14 TC chr1 8480095 8480323 trf 4 56.2 4 81 4 215 64 0 35 0 0.93 AGAA chr1 8480095 8480296 trf 8 24.8 8 93 2 285 63 0 36 0 0.95 AGAAAGGA chr1 8486037 8486109 trf 4 18.2 4 91 2 110 48 2 26 22 1.64 ATAG chr1 8487091 8487136 trf 8 5.3 9 81 10 51 55 0 6 37 1.26 ATAAAATGT chr1 8487094 8487129 trf 8 4.4 8 86 13 54 54 0 8 37 1.31 AAATGTAT chr1 8500835 8500872 trf 10 3.5 11 82 17 51 45 0 54 0 1.00 GAGAGGAGAGA chr1 8500842 8500873 trf 2 15.5 2 93 0 53 48 0 51 0 1.00 AG chr1 8500887 8500912 trf 12 2.1 12 100 0 50 40 0 60 0 0.97 GAGGAGGAGGAA chr1 8502905 8502968 trf 2 31.5 2 93 0 108 3 0 47 49 1.17 TG chr1 8529996 8530035 trf 11 3.5 11 82 10 53 76 23 0 0 0.78 AAACAAACAAA chr1 8536056 8536114 trf 3 19.3 3 90 0 89 36 60 3 0 1.14 ACC chr1 8536112 8536140 trf 3 9.3 3 100 0 56 64 35 0 0 0.94 CAA chr1 8537508 8537559 trf 5 10.8 5 87 8 54 0 0 23 76 0.79 TTTTG chr1 8543802 8543945 trf 5 28.6 5 97 0 187 56 0 43 0 0.99 GAAGA chr1 8547093 8547137 trf 5 8.8 5 84 0 61 77 15 2 4 1.04 AAAAC chr1 8547934 8547995 trf 2 30.5 2 94 0 104 45 50 1 1 1.21 CA chr1 8554880 8554993 trf 6 18.8 6 100 0 226 33 15 50 0 1.45 AGAGGC chr1 8557042 8557083 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 8559660 8559721 trf 2 30.5 2 77 0 50 52 36 9 1 1.45 AC chr1 8559662 8559705 trf 8 5.4 8 94 0 77 51 34 13 0 1.42 ACACACAG chr1 8561444 8561500 trf 4 14.0 4 88 0 85 50 46 0 3 1.19 CACA chr1 8561444 8561500 trf 6 9.3 6 90 0 85 50 46 0 3 1.19 CACACA chr1 8567229 8567274 trf 3 14.7 3 95 4 81 33 0 0 66 0.92 TTA chr1 8569892 8569936 trf 6 7.8 6 85 14 67 0 0 13 86 0.57 TTTTTG chr1 8575641 8575695 trf 2 27.5 2 84 3 74 0 0 44 55 0.99 TG chr1 8584647 8584700 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 8584699 8584747 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 8586696 8586762 trf 8 8.2 8 91 0 105 0 34 0 65 0.93 TTTCTTCC chr1 8586699 8586765 trf 4 16.5 4 87 0 60 0 37 0 62 0.96 CTTC chr1 8586762 8586794 trf 4 8.0 4 100 0 64 0 75 0 25 0.81 CCTC chr1 8586791 8586833 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 CT chr1 8586830 8586877 trf 4 11.8 4 100 0 94 0 25 0 74 0.82 TCTT chr1 8596300 8596347 trf 2 23.5 2 95 0 76 48 4 0 46 1.21 TA chr1 8597825 8597851 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 8597855 8598061 trf 6 33.8 6 93 4 342 32 0 67 0 0.90 GAGAGG chr1 8598743 8598814 trf 2 35.5 2 94 0 124 0 52 0 47 1.00 TC chr1 8606036 8606125 trf 4 22.0 4 95 2 151 49 2 24 23 1.62 GATA chr1 8607399 8607506 trf 4 27.0 4 84 5 146 51 1 22 24 1.58 AGAT chr1 8607940 8608020 trf 4 20.0 4 97 0 133 50 21 0 28 1.49 ATAC chr1 8615829 8615855 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 8616219 8616255 trf 4 9.0 4 88 11 56 0 0 25 75 0.81 TTTG chr1 8616400 8616468 trf 2 34.0 2 96 0 127 50 48 0 1 1.10 AC chr1 8628047 8628116 trf 5 13.8 5 73 14 54 0 2 24 72 0.98 TTTTG chr1 8630591 8630647 trf 8 7.1 8 95 2 60 3 0 46 50 1.19 GTGTATGT chr1 8630591 8630641 trf 2 25.0 2 95 0 91 2 0 48 50 1.12 GT chr1 8631313 8631341 trf 2 14.0 2 100 0 56 0 50 0 50 1.00 TC chr1 8634608 8634645 trf 2 18.5 2 94 0 65 48 48 2 0 1.15 AC chr1 8641424 8641449 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 8641448 8641473 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 8642987 8643028 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 8643652 8643695 trf 5 8.6 5 94 0 77 0 2 20 76 0.89 TGTTT chr1 8643692 8643719 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 8646827 8646864 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TATT chr1 8650374 8650399 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 8650638 8650679 trf 2 20.5 2 100 0 82 51 0 0 48 1.00 AT chr1 8650678 8650710 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 8651782 8651830 trf 5 10.0 5 82 13 57 83 16 0 0 0.65 CAAAA chr1 8651786 8651831 trf 6 7.8 6 90 9 60 84 15 0 0 0.62 AAAAAC chr1 8652293 8652324 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 8653497 8653540 trf 5 8.6 5 100 0 86 79 0 20 0 0.74 AAGAA chr1 8654910 8655001 trf 2 46.5 2 91 4 150 0 48 1 50 1.08 TC chr1 8655612 8655640 trf 12 2.3 12 100 0 56 46 7 14 32 1.71 TTTAAGACAAGA chr1 8662878 8662933 trf 2 27.5 2 100 0 110 0 0 49 50 1.00 TG chr1 8675271 8675305 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 8675458 8675487 trf 8 3.6 8 100 0 58 62 24 13 0 1.32 ACAGAAAC chr1 8676366 8676433 trf 5 12.8 5 80 13 64 74 22 1 1 0.98 AAAAC chr1 8678400 8678460 trf 2 30.0 2 86 0 84 43 0 6 50 1.28 AT chr1 8678492 8678517 trf 8 3.1 8 100 0 50 48 12 0 40 1.40 TACATATA chr1 8681666 8681752 trf 4 21.5 4 93 0 145 53 0 45 1 1.07 AAGG chr1 8697679 8697725 trf 1 46.0 1 84 0 56 91 0 6 2 0.50 A chr1 8703368 8703701 trf 6 56.7 6 69 20 181 1 65 0 32 1.08 TCCCTC chr1 8703377 8703699 trf 8 40.4 8 72 19 214 1 65 0 32 1.08 CTCTCCCT chr1 8703958 8703990 trf 9 3.6 9 100 0 64 31 56 0 12 1.37 CCACTACCA chr1 8709198 8709225 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 8714829 8714856 trf 5 5.4 5 100 0 54 59 22 0 18 1.38 CATAA chr1 8723689 8723775 trf 2 43.0 2 90 9 140 2 50 0 47 1.14 TC chr1 8730395 8730425 trf 9 3.2 9 90 9 51 0 20 0 80 0.72 TTCTTTTCT chr1 8730395 8730426 trf 5 6.4 5 92 7 55 0 19 0 80 0.71 TTCTT chr1 8735118 8735148 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 8737335 8737372 trf 5 7.2 5 96 3 65 78 18 0 2 0.87 ACAAA chr1 8739722 8739859 trf 6 22.0 6 68 25 72 45 0 18 35 1.50 ATATAG chr1 8745493 8745610 trf 5 23.0 5 92 3 108 29 0 69 0 1.00 GGAGG chr1 8745521 8745656 trf 5 27.0 5 97 0 198 35 0 64 0 0.94 GAGGA chr1 8746539 8746587 trf 2 24.0 2 91 0 78 47 47 2 2 1.25 CA chr1 8748263 8748303 trf 12 3.6 12 90 6 50 87 12 0 0 0.54 AAAAACAAAACA chr1 8750342 8750618 trf 4 68.2 4 84 6 198 0 36 0 62 1.03 TCTT chr1 8750599 8750633 trf 11 3.0 11 86 4 50 0 14 0 85 0.60 TTTCTTTTTTT chr1 8761962 8762015 trf 3 18.0 3 92 3 90 1 0 30 67 1.01 TGT chr1 8763066 8763656 trf 6 98.3 6 91 0 577 55 0 44 0 0.99 AGAAGA chr1 8764769 8764888 trf 4 30.8 4 88 6 93 0 34 0 64 0.99 TTTC chr1 8764853 8764925 trf 6 10.8 6 73 24 56 1 19 2 76 0.99 TTTCTT chr1 8784609 8784648 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 8786908 8786935 trf 6 4.5 6 100 0 54 0 37 14 48 1.45 CTCTTG chr1 8790229 8790256 trf 6 4.5 6 100 0 54 0 37 14 48 1.45 CTCTTG chr1 8794756 8794793 trf 6 6.3 6 85 14 51 86 0 13 0 0.57 AAAAGA chr1 8794756 8794900 trf 5 29.0 5 92 5 159 75 0 25 0 0.81 AAAAG chr1 8800249 8800299 trf 4 12.5 4 100 0 100 50 0 50 0 1.00 AGGA chr1 8801024 8801049 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 8805446 8805525 trf 6 12.7 6 76 7 59 24 3 70 1 1.11 GGGGGA chr1 8808876 8808914 trf 3 12.7 3 94 0 67 2 0 28 68 1.03 TTG chr1 8812523 8812570 trf 2 23.5 2 91 0 76 0 44 4 51 1.21 TC chr1 8813352 8813434 trf 12 6.9 11 76 13 58 48 0 50 1 1.08 AAGAGGAGGAG chr1 8813361 8813434 trf 12 5.7 14 81 16 72 49 0 50 0 1.00 AAGAGGAGGAGGAA chr1 8815662 8815726 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 8816640 8816673 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 8817843 8817913 trf 2 35.0 2 100 0 140 0 50 0 50 1.00 TC chr1 8819082 8819133 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 8820360 8820396 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 8826038 8826083 trf 5 8.8 5 95 4 81 0 0 17 82 0.68 TTTTG chr1 8826073 8826107 trf 7 4.9 7 96 0 50 8 0 5 85 0.75 TTTTTAT chr1 8827246 8827291 trf 3 15.0 3 100 0 90 0 0 33 66 0.92 TTG chr1 8834931 8834965 trf 4 8.5 4 93 0 59 29 0 70 0 0.87 AGGG chr1 8834962 8835012 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 8835403 8835450 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 8836959 8836992 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 8840397 8840872 trf 6 77.8 6 88 6 373 0 50 0 49 1.02 CTTCTC chr1 8840478 8840839 trf 3 122.7 3 76 3 313 0 55 0 43 1.01 CTC chr1 8840837 8840876 trf 3 13.0 3 100 0 78 0 33 0 66 0.92 CTT chr1 8843296 8843322 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 8848161 8848192 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 8848189 8848294 trf 3 34.7 3 98 1 201 65 0 34 0 0.93 AGA chr1 8848292 8848372 trf 3 27.0 3 87 7 119 30 1 68 0 0.97 AGG chr1 8848373 8848482 trf 5 21.4 5 95 3 191 37 0 62 0 0.96 GGGAA chr1 8851720 8851747 trf 4 6.8 4 100 0 54 74 0 25 0 0.83 AGAA chr1 8851765 8851798 trf 4 8.2 4 100 0 66 24 0 75 0 0.80 GGAG chr1 8851795 8851852 trf 4 14.2 4 96 0 105 52 0 47 0 1.00 AGGA chr1 8856524 8856579 trf 2 27.5 2 92 0 74 1 5 47 45 1.36 TG chr1 8860741 8860780 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 8863799 8863994 trf 7 27.9 7 99 0 300 0 37 33 28 1.58 CTGCTGC chr1 8865198 8865253 trf 2 27.5 2 100 0 110 0 49 0 50 1.00 TC chr1 8865252 8865287 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 8865681 8865750 trf 3 23.0 3 87 0 102 60 0 5 33 1.20 TAA chr1 8865885 8865933 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 8866608 8866647 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 8869123 8869176 trf 2 26.5 2 100 0 106 50 0 0 49 1.00 AT chr1 8870488 8870543 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 8871248 8871337 trf 4 22.5 4 93 2 153 71 1 26 0 0.92 GAAA chr1 8871338 8871371 trf 12 2.8 12 90 9 50 33 0 66 0 0.92 GGGAGGGAAGGA chr1 8896956 8896989 trf 4 8.8 4 87 12 52 0 0 18 81 0.68 TTTG chr1 8896960 8897017 trf 6 8.6 7 94 5 77 0 0 17 82 0.67 TTTGTTT chr1 8900977 8901280 trf 8 38.8 8 86 5 117 47 0 25 27 1.52 TAGATAGA chr1 8901020 8901085 trf 6 10.8 6 98 0 121 49 0 18 32 1.48 ATAGAT chr1 8903917 8903955 trf 4 9.5 4 83 11 51 81 0 0 18 0.69 AATA chr1 8906439 8906516 trf 2 38.5 2 78 0 82 6 1 44 48 1.37 TG chr1 8906441 8906516 trf 10 7.7 10 83 5 91 6 1 44 48 1.37 TGTGTGTGTA chr1 8909206 8909260 trf 6 9.0 6 100 0 108 50 16 0 33 1.46 CATATA chr1 8909489 8909592 trf 6 17.7 6 94 6 185 33 33 0 33 1.58 ACATCT chr1 8918767 8918803 trf 4 9.2 4 87 6 56 0 2 22 75 0.94 TGTT chr1 8924736 8924804 trf 2 34.0 2 96 0 127 0 48 0 51 1.00 TC chr1 8926904 8926967 trf 4 15.8 4 100 0 126 0 23 0 76 0.79 TTTC chr1 8928671 8928706 trf 11 3.3 11 88 4 54 0 17 0 82 0.66 TTTTTTCTTTC chr1 8928680 8928710 trf 4 7.8 4 92 7 53 0 20 0 80 0.72 TTTC chr1 8928707 8928760 trf 8 6.6 8 81 14 56 0 0 16 83 0.66 TTTTTTTG chr1 8928713 8928759 trf 12 3.6 13 88 11 69 0 0 19 80 0.71 TTTGTTTTGTTTG chr1 8928719 8928758 trf 4 9.8 4 89 10 62 0 0 20 79 0.73 TTTG chr1 8930638 8930678 trf 3 13.3 3 94 0 71 35 0 65 0 0.93 GGA chr1 8935817 8935917 trf 2 50.0 2 93 0 173 3 0 47 50 1.16 GT chr1 8943810 8943835 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 8958770 8958803 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 8960550 8960678 trf 2 65.5 2 88 4 172 43 0 56 0 0.99 GA chr1 8962351 8962420 trf 4 17.8 4 88 5 97 24 27 2 44 1.68 CTAT chr1 8962591 8962622 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 8967540 8967589 trf 5 10.0 5 78 12 57 77 20 2 0 0.87 AAAAC chr1 8969079 8969125 trf 11 3.9 12 85 8 60 4 10 0 84 0.75 TTTTCTTTTTTC chr1 8969234 8969294 trf 2 30.0 2 96 0 111 48 0 1 50 1.11 TA chr1 8969423 8969463 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 TA chr1 8969462 8969487 trf 2 12.5 2 100 0 50 52 0 48 0 1.00 AG chr1 8973454 8973481 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 8976992 8977018 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 8988546 8988591 trf 4 11.8 4 81 9 58 75 24 0 0 0.80 AACA chr1 8989078 8989125 trf 1 47.0 1 100 0 94 100 0 0 0 0.00 A chr1 8992157 8992197 trf 4 10.2 4 94 5 73 77 22 0 0 0.77 AAAC chr1 8996046 8996084 trf 3 12.7 3 88 0 58 63 31 5 0 1.17 AAC chr1 8996945 8996997 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 9000142 9000173 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 9003158 9003188 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 CT chr1 9003199 9003238 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 9007830 9007857 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 9010781 9010840 trf 2 29.5 2 100 0 118 50 0 0 49 1.00 AT chr1 9013659 9013689 trf 2 15.0 2 92 0 51 50 3 0 46 1.18 TA chr1 9015581 9015617 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 9018368 9018403 trf 10 3.5 10 88 0 52 45 0 11 42 1.40 AATATATATG chr1 9020158 9020213 trf 2 27.5 2 96 0 101 52 0 47 0 1.00 AG chr1 9020211 9020237 trf 4 6.5 4 100 0 52 50 0 26 23 1.50 GAAT chr1 9020238 9020286 trf 3 16.0 3 86 0 69 39 0 60 0 0.97 GGA chr1 9021847 9021906 trf 2 30.0 2 96 3 111 0 50 0 49 1.00 TC chr1 9022621 9022690 trf 5 13.6 5 79 14 63 0 0 23 76 0.78 TTTGT chr1 9025966 9026011 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 9029379 9029418 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 9035924 9035971 trf 2 23.5 2 93 0 76 2 44 0 53 1.12 TC chr1 9036882 9036936 trf 2 28.5 2 85 10 51 44 0 7 48 1.31 AT chr1 9053675 9053747 trf 3 24.7 3 77 8 69 5 2 27 63 1.30 TTG chr1 9054349 9054390 trf 3 13.7 3 100 0 82 0 0 65 34 0.93 GTG chr1 9057034 9057071 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 9077037 9077077 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 9088060 9088105 trf 4 11.5 4 95 4 83 77 22 0 0 0.76 AACA chr1 9090006 9090053 trf 11 4.2 11 86 5 67 89 0 10 0 0.49 AAAAAAAAAAG chr1 9090006 9090050 trf 1 44.0 1 81 0 52 90 0 9 0 0.44 A chr1 9099781 9099824 trf 2 21.5 2 95 0 77 51 2 0 46 1.13 AT chr1 9101908 9101950 trf 4 10.5 4 100 0 84 26 0 50 23 1.50 GATG chr1 9101974 9102025 trf 4 12.8 4 100 0 102 50 0 25 23 1.49 AGAT chr1 9103930 9103959 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 9104116 9104160 trf 5 8.8 5 100 0 88 0 0 18 81 0.68 TTTTG chr1 9111508 9111665 trf 4 39.5 4 92 3 174 67 1 30 0 1.03 AGAA chr1 9118140 9118165 trf 4 6.2 4 100 0 50 24 76 0 0 0.80 CCCA chr1 9142552 9142586 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 9148853 9148982 trf 4 32.5 4 93 1 134 39 0 60 0 0.97 AGAG chr1 9154306 9154356 trf 2 25.5 2 91 4 84 52 46 2 0 1.12 AC chr1 9169851 9169876 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 9192844 9192945 trf 5 20.2 5 98 0 193 61 0 38 0 0.96 AAAGG chr1 9193069 9193176 trf 6 17.8 6 94 0 169 11 21 33 33 1.89 TGCTGA chr1 9193178 9193220 trf 5 8.6 5 94 5 77 0 0 21 78 0.75 TGTTT chr1 9201394 9201434 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 TA chr1 9201433 9201472 trf 10 3.9 10 93 0 60 51 38 0 10 1.36 ACATACACAC chr1 9206725 9206795 trf 2 34.5 2 79 2 50 47 8 4 40 1.54 TA chr1 9211778 9211817 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 9218484 9218537 trf 4 13.0 4 81 16 56 0 0 22 77 0.77 GTTT chr1 9225254 9225307 trf 4 13.2 4 100 0 106 73 0 26 0 0.83 GAAA chr1 9225304 9225351 trf 4 11.8 4 100 0 94 51 0 48 0 1.00 AAGG chr1 9226134 9226189 trf 3 18.3 3 100 0 110 67 0 0 32 0.91 ATA chr1 9227616 9227657 trf 3 13.7 3 100 0 82 31 0 0 68 0.90 TTA chr1 9229744 9229777 trf 4 8.2 4 87 12 50 0 0 21 78 0.75 TTTG chr1 9247132 9247163 trf 11 2.7 12 90 10 55 90 0 9 0 0.46 AAAGAAAAAAAA chr1 9250425 9250528 trf 2 51.5 2 91 0 152 0 2 43 53 1.15 TG chr1 9257412 9257475 trf 6 10.8 6 91 6 103 50 12 36 0 1.41 AGAGAC chr1 9272180 9272205 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 9273513 9273551 trf 4 9.5 4 94 0 67 23 2 23 50 1.62 TTGA chr1 9274124 9274170 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 9275636 9275678 trf 11 4.0 11 81 12 52 28 11 19 40 1.87 TAAAGGCTTTT chr1 9279786 9279845 trf 12 5.5 10 86 11 57 50 0 25 23 1.49 ATAGAGATAG chr1 9279799 9279847 trf 4 12.2 4 95 4 89 52 0 22 25 1.48 AGAT chr1 9281950 9281995 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 9282128 9282165 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 9284074 9284109 trf 2 17.5 2 87 0 52 48 45 0 5 1.26 CA chr1 9286329 9286363 trf 12 2.8 12 90 0 59 17 0 82 0 0.67 GGGAGGGGGGAG chr1 9289376 9289403 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 TATT chr1 9290814 9290852 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 9293249 9293306 trf 2 29.0 2 92 3 98 47 0 52 0 1.00 AG chr1 9296050 9296135 trf 4 21.2 4 95 0 152 48 0 24 27 1.52 AGAT chr1 9302115 9302160 trf 2 23.0 2 95 4 83 48 51 0 0 1.00 AC chr1 9302308 9302355 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 9307494 9307560 trf 4 16.5 4 100 0 132 50 0 24 25 1.50 TAGA chr1 9310513 9310567 trf 2 27.5 2 96 3 101 50 50 0 0 1.00 AC chr1 9313340 9313416 trf 5 15.6 5 94 2 120 0 1 36 61 1.04 TTTGG chr1 9314805 9314831 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 9317356 9317469 trf 10 11.6 10 95 4 205 29 9 61 0 1.28 GCAGAGGGGA chr1 9318809 9318842 trf 3 11.0 3 93 0 57 0 63 0 36 0.95 CTC chr1 9319713 9319757 trf 2 22.0 2 85 0 52 52 40 0 6 1.28 CA chr1 9319714 9319757 trf 12 3.6 12 87 0 59 53 39 0 6 1.28 ACACACACACAT chr1 9328154 9328557 trf 4 107.5 4 81 12 230 50 0 49 0 1.00 AGAG chr1 9328498 9328645 trf 12 12.2 12 91 0 159 64 0 35 0 0.94 AAGAAAGAAAGA chr1 9328570 9328645 trf 4 18.8 4 100 0 150 74 0 25 0 0.82 AAGA chr1 9333113 9333154 trf 11 3.8 11 75 18 50 12 29 7 51 1.66 TTATGTCCTTC chr1 9340283 9340318 trf 3 11.7 3 100 0 70 0 31 34 34 1.58 TGC chr1 9346587 9346613 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 9365511 9365581 trf 2 35.5 2 97 2 133 50 0 50 0 1.00 GA chr1 9366309 9366348 trf 5 7.6 5 94 5 69 17 0 0 82 0.68 TTTAT chr1 9372292 9372332 trf 11 3.2 12 89 10 55 42 0 55 2 1.13 GAGAGGAGAGAG chr1 9385597 9385652 trf 12 4.4 12 86 8 83 89 10 0 0 0.50 AAAAAAAACAAA chr1 9385597 9385652 trf 1 55.0 1 77 0 56 89 10 0 0 0.50 A chr1 9385599 9385650 trf 6 7.9 7 87 12 74 88 11 0 0 0.52 AAAAAAC chr1 9408856 9408893 trf 8 4.6 8 89 0 56 13 27 43 16 1.85 CCAGGGTG chr1 9415113 9415147 trf 12 2.9 11 87 12 50 2 8 0 88 0.62 TTTTTTTTTTC chr1 9417144 9417178 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 9420277 9420322 trf 4 11.2 4 100 0 90 0 0 24 75 0.80 TGTT chr1 9427007 9427046 trf 10 3.9 10 89 0 60 38 12 10 38 1.78 TTGATTACAA chr1 9435909 9435942 trf 6 5.5 6 100 0 66 51 15 33 0 1.43 AGAGAC chr1 9438841 9438898 trf 2 28.5 2 92 0 96 50 45 0 3 1.18 AC chr1 9453421 9453447 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 9454192 9454219 trf 3 9.0 3 100 0 54 66 0 33 0 0.92 AAG chr1 9454217 9454272 trf 3 18.3 3 100 0 110 34 0 65 0 0.93 AGG chr1 9461243 9461301 trf 5 11.6 5 100 0 116 0 0 37 62 0.96 TTTGG chr1 9462515 9462542 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 9463886 9463931 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 9471524 9471611 trf 2 45.0 2 93 6 153 49 0 50 0 1.00 GA chr1 9473463 9473492 trf 12 2.3 13 94 5 51 10 17 0 72 1.11 TCTTTAATTTCTT chr1 9473727 9473766 trf 8 4.8 8 84 6 51 0 0 17 82 0.68 TTTTTTGG chr1 9474736 9474784 trf 2 26.5 2 80 19 61 0 52 0 47 1.00 CT chr1 9475820 9475867 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 9490468 9490520 trf 5 10.6 5 95 4 97 80 0 0 19 0.71 AAAAT chr1 9494395 9494440 trf 8 5.6 8 79 10 56 15 22 26 35 1.94 CTGTGATC chr1 9494502 9494557 trf 8 6.9 8 82 0 74 10 23 36 29 1.89 TCCTGGGA chr1 9497488 9497533 trf 3 15.0 3 100 0 90 33 0 0 66 0.92 ATT chr1 9505927 9505990 trf 10 6.3 10 96 0 108 0 25 0 74 0.82 TTTCCTTTCT chr1 9505927 9505990 trf 5 12.6 5 86 0 90 0 25 0 74 0.82 TTTCT chr1 9508515 9508555 trf 3 13.3 3 100 0 80 67 0 0 32 0.91 ATA chr1 9511279 9511311 trf 5 6.4 5 92 0 55 21 3 0 75 0.95 ATTTT chr1 9511458 9511512 trf 6 9.0 6 85 0 63 48 12 38 0 1.42 GAGACA chr1 9516576 9516619 trf 4 10.8 4 79 0 50 32 0 65 2 1.06 AGGG chr1 9516632 9516696 trf 5 12.8 5 100 0 128 20 0 79 0 0.73 GGGAG chr1 9518524 9518564 trf 1 40.0 1 89 0 53 0 0 7 92 0.38 T chr1 9522357 9522420 trf 3 20.7 3 86 3 72 0 0 36 63 0.95 TTG chr1 9529331 9529373 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 9540926 9541023 trf 2 48.5 2 93 0 167 49 0 50 0 1.00 AG chr1 9547886 9547911 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 9550026 9550057 trf 10 3.1 10 100 0 62 22 19 48 9 1.78 AGGCAGGCTG chr1 9559238 9559274 trf 6 6.3 6 93 6 58 0 0 16 83 0.65 TTTTGT chr1 9567717 9567759 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 9571014 9571059 trf 12 3.4 14 80 20 53 64 0 35 0 0.94 AAAGGAAGGAAAGG chr1 9571014 9571059 trf 5 8.2 5 81 18 54 64 0 35 0 0.94 AAAGG chr1 9579566 9579598 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 9579964 9579994 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 9579993 9580031 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 9581719 9581929 trf 4 52.5 4 87 1 188 36 0 63 0 0.95 AGGG chr1 9582030 9582071 trf 4 10.2 4 83 0 55 2 21 26 48 1.63 CTGT chr1 9588884 9588933 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 9591729 9591759 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 TC chr1 9591773 9591824 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 9592666 9592783 trf 4 29.2 4 86 6 148 47 0 28 23 1.52 TAGA chr1 9594580 9594611 trf 8 3.9 8 91 0 53 25 29 32 12 1.93 CCAGGATG chr1 9600353 9600392 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 9604236 9604266 trf 3 10.0 3 92 0 51 63 0 3 33 1.11 TAA chr1 9605450 9605506 trf 4 14.0 4 100 0 112 75 0 25 0 0.81 AAGA chr1 9605504 9605651 trf 5 29.4 5 99 0 285 40 0 59 0 0.98 GAGAG chr1 9605652 9605822 trf 10 17.3 10 88 3 256 32 0 66 0 0.96 GGGGAAGAGG chr1 9606361 9606389 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 9608912 9608948 trf 5 6.8 5 87 12 54 80 16 2 0 0.83 AAAAC chr1 9611149 9611196 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 9613809 9613868 trf 2 29.5 2 96 0 109 0 1 50 47 1.11 GT chr1 9614819 9615010 trf 4 47.8 4 91 0 265 31 0 68 0 0.90 AGGG chr1 9614897 9615082 trf 4 46.0 4 89 6 178 42 0 57 0 0.98 GGAA chr1 9615434 9615463 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 9618147 9618179 trf 7 4.9 7 85 14 50 0 0 25 75 0.81 GTTTTGT chr1 9618313 9618344 trf 2 15.5 2 100 0 62 0 51 0 48 1.00 CT chr1 9618345 9618414 trf 2 34.5 2 91 0 93 44 1 5 47 1.35 AT chr1 9630960 9630988 trf 2 14.0 2 100 0 56 0 50 0 50 1.00 TC chr1 9630987 9631025 trf 2 19.0 2 94 0 67 47 52 0 0 1.00 CA chr1 9633670 9633706 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 9634031 9634086 trf 10 5.1 11 84 13 62 49 12 36 1 1.52 ACAGAGCAGAG chr1 9634031 9634111 trf 6 14.2 6 74 21 66 51 11 36 1 1.46 ACAGAG chr1 9634049 9634111 trf 2 31.5 2 75 3 54 53 8 37 1 1.40 AG chr1 9635380 9635850 trf 2 242.0 2 86 7 657 3 0 48 47 1.21 GT chr1 9638055 9638168 trf 7 16.3 7 76 8 88 0 51 0 47 1.06 TCCTTCC chr1 9638115 9638146 trf 11 2.9 11 95 4 55 0 35 0 64 0.94 CTTTCTTCCTT chr1 9643771 9643804 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 9646642 9646702 trf 4 15.0 4 100 0 120 50 0 25 25 1.50 GATA chr1 9646695 9646755 trf 6 10.0 6 100 0 120 50 0 16 33 1.46 ATAGAT chr1 9648035 9648079 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 9657337 9657489 trf 4 37.8 4 95 1 205 43 0 30 25 1.55 ATAG chr1 9670564 9670625 trf 6 10.5 6 92 7 108 50 16 32 0 1.45 AGAGAC chr1 9686453 9686500 trf 7 7.0 7 92 7 80 87 12 0 0 0.55 CAAAAAA chr1 9698477 9698502 trf 12 2.1 12 100 0 50 24 16 0 60 1.36 TTTTTACATCAT chr1 9710498 9710538 trf 4 9.8 4 84 15 55 75 22 2 0 0.93 AAAC chr1 9712502 9712554 trf 4 13.0 4 95 0 95 50 0 23 26 1.50 TAGA chr1 9713882 9713919 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 9717414 9717467 trf 10 5.4 10 88 6 65 0 11 0 88 0.51 TTTTTTTCTT chr1 9717414 9717467 trf 1 53.0 1 76 0 52 0 11 0 88 0.51 T chr1 9717417 9717446 trf 5 5.8 5 100 0 58 0 17 0 82 0.66 TTTTC chr1 9725816 9725855 trf 8 4.9 8 90 0 51 76 12 0 10 1.01 AAATAAAC chr1 9727016 9727042 trf 12 2.2 12 100 0 52 84 15 0 0 0.62 AAAACAAAACAA chr1 9732299 9732343 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 9742970 9742998 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 9743018 9743049 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 9743702 9743768 trf 5 13.2 5 80 15 66 0 21 1 77 0.85 TCTTT chr1 9743705 9743762 trf 4 13.8 4 87 9 55 0 22 0 77 0.77 TTTC chr1 9749754 9749787 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 9752252 9752287 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 9752635 9752742 trf 2 53.5 2 90 0 160 50 43 0 5 1.25 AC chr1 9753142 9753177 trf 12 2.9 12 86 0 52 85 14 0 0 0.59 AAAACAAAAAAA chr1 9754366 9754421 trf 2 27.5 2 96 0 101 1 0 49 49 1.11 TG chr1 9755336 9755366 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 9756436 9756593 trf 2 78.5 2 86 0 116 0 36 12 50 1.41 CT chr1 9756592 9756621 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 9757161 9757200 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 9759077 9759105 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 9765362 9765407 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 9771803 9771841 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 9773233 9773259 trf 4 6.5 4 100 0 52 26 50 0 23 1.50 CACT chr1 9775294 9775348 trf 2 27.0 2 100 0 108 0 0 50 50 1.00 TG chr1 9776620 9776665 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 9777624 9777663 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 9777737 9777801 trf 1 64.0 1 90 0 83 0 0 7 92 0.40 T chr1 9780933 9780980 trf 11 4.5 11 87 12 64 82 17 0 0 0.66 AAAAACAAAAC chr1 9780934 9780983 trf 5 9.8 5 89 10 66 83 16 0 0 0.64 AAAAC chr1 9781293 9781324 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 9783032 9783162 trf 3 43.7 3 87 4 156 0 40 0 60 0.97 TCT chr1 9783408 9783439 trf 4 7.8 4 92 0 53 0 51 0 48 1.00 CTTC chr1 9783436 9783486 trf 4 12.5 4 100 0 100 0 26 0 74 0.83 CTTT chr1 9784392 9784713 trf 8 41.9 8 82 17 328 29 13 57 0 1.36 GAGGCAGG chr1 9785282 9785314 trf 5 6.4 5 100 0 64 0 0 18 81 0.70 TTGTT chr1 9786228 9786364 trf 4 35.0 4 80 7 120 52 0 46 0 1.05 GAAG chr1 9790187 9790267 trf 4 20.0 4 93 0 61 41 2 56 0 1.13 GAGA chr1 9790209 9790244 trf 12 2.9 12 100 0 70 25 0 74 0 0.82 GAGGGAGGGAGG chr1 9790209 9790244 trf 8 4.4 8 100 0 70 25 0 74 0 0.82 GAGGGAGG chr1 9796568 9796608 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 9798815 9798869 trf 2 27.0 2 92 0 81 48 0 51 0 1.00 AG chr1 9802009 9802082 trf 2 36.5 2 88 0 110 46 1 4 47 1.30 AT chr1 9803578 9803607 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 9808369 9808418 trf 4 12.2 4 100 0 98 24 48 0 26 1.51 TCCA chr1 9809649 9809933 trf 6 47.3 6 87 5 207 0 45 0 54 1.02 TTCTTC chr1 9812670 9812713 trf 5 8.6 5 100 0 86 39 0 0 60 0.97 ATTAT chr1 9818041 9818066 trf 2 12.5 2 100 0 50 0 52 0 48 1.00 CT chr1 9818294 9818334 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 9819699 9819741 trf 2 21.0 2 90 0 66 45 0 54 0 0.99 GA chr1 9820225 9820274 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 9824959 9825020 trf 4 15.2 4 100 0 122 0 49 0 50 1.00 TCCT chr1 9825655 9825687 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 9827878 9827923 trf 4 11.2 4 100 0 90 51 0 24 24 1.49 ATAG chr1 9830383 9830408 trf 3 8.3 3 100 0 50 0 0 32 68 0.90 TGT chr1 9830844 9830899 trf 2 27.5 2 84 0 74 1 41 5 50 1.36 TC chr1 9830897 9830929 trf 12 2.7 12 95 0 55 0 68 0 31 0.90 CTTCCTCCCTCC chr1 9831158 9831204 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 9831672 9831699 trf 8 3.4 8 100 0 54 0 11 0 88 0.50 TTTTTCTT chr1 9832293 9832336 trf 5 8.2 5 90 10 68 0 0 23 76 0.78 TGTTT chr1 9838256 9838310 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 CT chr1 9839830 9839873 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 9842108 9842183 trf 8 9.0 8 79 17 57 1 12 2 84 0.80 TTCTTTTT chr1 9842121 9842190 trf 1 69.0 1 73 0 57 0 8 4 86 0.68 T chr1 9842886 9842956 trf 4 17.5 4 90 0 113 0 70 0 30 0.88 TCCC chr1 9846484 9846534 trf 4 12.5 4 80 0 55 0 40 8 52 1.31 CTCT chr1 9846484 9846534 trf 6 8.7 6 86 8 59 0 40 8 52 1.31 CTCTGT chr1 9847021 9847063 trf 3 14.7 3 90 9 70 71 28 0 0 0.86 AAC chr1 9855979 9856029 trf 9 5.6 9 81 9 57 44 4 2 50 1.32 TATATATTA chr1 9855979 9856029 trf 2 26.5 2 78 11 52 44 4 2 50 1.32 TA chr1 9856152 9856181 trf 6 4.8 6 100 0 58 0 34 13 51 1.42 TCTCTG chr1 9858451 9858484 trf 9 3.7 9 95 0 57 24 9 9 57 1.58 TTATTGCTA chr1 9861766 9861796 trf 8 3.9 8 95 4 53 90 0 10 0 0.47 AAAAGAAA chr1 9862137 9862197 trf 2 30.0 2 100 0 120 0 50 0 50 1.00 TC chr1 9864593 9864631 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 9866816 9866887 trf 2 35.0 2 91 2 115 4 0 46 49 1.21 TG chr1 9867772 9867818 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 9870073 9870098 trf 11 2.3 11 100 0 50 32 8 12 48 1.69 TGTCTTATAAA chr1 9879248 9879284 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 CT chr1 9879283 9879342 trf 2 29.5 2 96 0 109 0 1 47 50 1.11 TG chr1 9887207 9887261 trf 2 27.0 2 96 0 99 48 0 51 0 1.00 GA chr1 9891841 9891873 trf 2 16.0 2 93 0 55 0 3 50 46 1.17 TG chr1 9893503 9893542 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 9893934 9893984 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 9894190 9894245 trf 3 18.7 3 92 3 94 65 0 1 32 1.03 AAT chr1 9894785 9894860 trf 4 19.0 4 94 2 134 74 0 25 0 0.82 AAAG chr1 9898442 9898470 trf 12 2.3 12 100 0 56 32 7 17 42 1.77 TATGTATATGCA chr1 9903043 9903071 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 9903317 9903365 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 9910262 9910296 trf 4 8.5 4 100 0 68 26 0 23 50 1.50 ATGT chr1 9911073 9911104 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 9913929 9913979 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 9914696 9914727 trf 4 7.8 4 100 0 62 25 0 0 74 0.82 TTAT chr1 9916808 9916845 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 9917558 9917609 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 9919613 9919646 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 9921234 9921259 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 9926110 9926146 trf 4 9.0 4 100 0 72 0 50 25 25 1.50 TGCC chr1 9927264 9927298 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 9927940 9927984 trf 2 22.0 2 90 0 70 50 45 0 4 1.22 AC chr1 9928605 9928644 trf 4 10.0 4 94 5 71 76 23 0 0 0.78 CAAA chr1 9928606 9928657 trf 12 4.2 12 90 9 54 80 19 0 0 0.71 AAACAAAAAACA chr1 9930662 9930718 trf 5 11.0 5 87 11 78 80 19 0 0 0.71 AAAAC chr1 9935250 9935290 trf 5 7.6 5 88 5 53 82 15 0 2 0.77 AAAAC chr1 9944897 9944942 trf 4 12.0 4 83 9 51 82 0 17 0 0.68 AAAG chr1 9948123 9948161 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 9958724 9958749 trf 5 5.0 5 100 0 50 60 40 0 0 0.97 AAACC chr1 9967639 9967671 trf 4 8.0 4 100 0 64 0 75 25 0 0.81 CCCG chr1 9971831 9971866 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 9974989 9975023 trf 4 8.2 4 96 3 59 0 73 0 26 0.83 CCTC chr1 9976334 9976486 trf 6 25.3 6 88 0 187 0 8 41 50 1.33 GTGTGT chr1 9978976 9979015 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 9980298 9980477 trf 2 89.5 2 84 0 232 5 2 45 46 1.39 TG chr1 9984493 9984596 trf 6 16.7 6 76 11 68 56 12 30 0 1.43 AGAGCA chr1 9987208 9987235 trf 4 6.8 4 100 0 54 74 0 0 25 0.83 AATA chr1 9987964 9988008 trf 3 14.7 3 95 0 70 31 4 0 63 1.14 TTA chr1 9989431 9989491 trf 8 7.1 9 90 5 74 0 10 0 90 0.47 TTTTCTTTT chr1 9989431 9989491 trf 1 60.0 1 79 0 66 0 10 0 90 0.47 T chr1 9990326 9990374 trf 2 23.5 2 87 12 71 47 47 0 4 1.21 AC chr1 9994405 9994520 trf 2 57.5 2 87 0 131 0 40 8 51 1.33 TC chr1 9997561 9997597 trf 4 9.0 4 100 0 72 75 25 0 0 0.81 CAAA chr1 10002769 10002796 trf 4 6.8 4 100 0 54 22 0 0 77 0.76 TTTA chr1 10004641 10004702 trf 2 31.0 2 90 3 97 0 1 49 49 1.10 TG chr1 10006632 10006701 trf 6 11.5 6 98 0 93 0 42 7 50 1.30 TCTCTC chr1 10006700 10006755 trf 2 28.0 2 96 3 103 0 0 49 50 1.00 TG chr1 10011320 10011360 trf 2 20.0 2 92 0 62 2 0 45 52 1.14 TG chr1 10017795 10017891 trf 4 24.0 4 91 4 149 25 22 1 51 1.55 CTAT chr1 10019592 10019625 trf 11 2.9 12 86 13 52 66 33 0 0 0.92 AAAACCAAAACC chr1 10019592 10019625 trf 6 5.8 6 92 7 52 66 33 0 0 0.92 AAAACC chr1 10027465 10027493 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 10042531 10042620 trf 8 11.1 8 90 4 90 0 37 0 62 0.95 TTCCTTCT chr1 10042531 10042578 trf 4 11.8 4 95 0 85 0 46 0 53 1.00 TTCC chr1 10042535 10042620 trf 12 7.1 12 88 5 91 0 36 0 63 0.95 TTCCTTCTTTCT chr1 10042567 10042620 trf 4 13.2 4 91 0 88 0 28 0 71 0.86 TTCT chr1 10049550 10049593 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 10052200 10052311 trf 8 12.9 8 76 12 69 42 45 0 12 1.42 CACACACT chr1 10052200 10052313 trf 10 11.3 10 82 0 100 42 45 0 12 1.42 CACACACACA chr1 10052201 10052275 trf 8 9.8 8 81 16 79 48 43 0 8 1.32 ACACACAT chr1 10052211 10052317 trf 12 9.0 12 76 12 67 41 44 0 14 1.45 ACACACACTCAT chr1 10052380 10052450 trf 4 17.5 4 100 0 140 0 74 0 25 0.82 TCCC chr1 10052693 10052741 trf 6 7.7 6 90 9 78 0 14 0 85 0.60 TTTTTC chr1 10053901 10053936 trf 4 8.8 4 93 0 52 71 22 5 0 1.07 AAAC chr1 10062988 10063031 trf 9 4.8 9 88 0 50 16 25 58 0 1.38 GCAGGGGGC chr1 10069326 10069375 trf 4 12.8 4 85 8 66 24 0 24 51 1.49 TGTA chr1 10074423 10074452 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 10077796 10077841 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 10077840 10077878 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 10078563 10078596 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 10080144 10080170 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 10081269 10081296 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 10081295 10081391 trf 2 48.0 2 89 4 149 48 0 46 4 1.21 GA chr1 10092127 10092397 trf 9 25.4 12 76 17 107 53 0 42 2 1.19 AGAGAGAGAGAG chr1 10092127 10092397 trf 6 50.8 6 67 28 107 53 0 42 2 1.19 AGAGAG chr1 10092181 10092232 trf 3 16.7 3 95 4 93 66 0 33 0 0.92 AAG chr1 10092286 10092363 trf 3 24.0 3 84 12 84 59 0 37 2 1.11 AGA chr1 10101972 10102016 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 10102127 10102178 trf 6 8.5 6 100 0 102 0 35 15 49 1.45 CTCTGT chr1 10102970 10103029 trf 4 14.8 4 89 0 55 11 0 37 50 1.39 TGTG chr1 10103055 10103080 trf 12 2.1 12 100 0 50 52 8 0 40 1.31 ATATATATATAC chr1 10116487 10116592 trf 5 21.0 5 100 0 210 0 40 0 60 0.97 TCTCT chr1 10117341 10117396 trf 2 27.5 2 100 0 110 50 0 0 49 1.00 AT chr1 10124567 10124612 trf 10 4.6 10 97 2 83 93 6 0 0 0.35 AAAAAACAAA chr1 10124567 10124613 trf 1 46.0 1 86 0 65 93 6 0 0 0.35 A chr1 10127678 10127730 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 10128508 10128562 trf 3 18.3 3 94 3 92 35 0 0 64 0.94 TAT chr1 10128677 10128738 trf 4 15.2 4 100 0 122 0 49 0 50 1.00 TTCC chr1 10128735 10128791 trf 4 14.0 4 100 0 112 0 75 0 25 0.81 CCTC chr1 10128788 10128818 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 CT chr1 10128815 10128842 trf 4 6.8 4 100 0 54 0 25 0 74 0.83 TCTT chr1 10134804 10134853 trf 1 49.0 1 87 0 53 8 0 2 89 0.55 T chr1 10134811 10134846 trf 12 2.8 12 95 4 61 11 0 2 85 0.69 TTTTTTTTTTAA chr1 10142391 10142418 trf 6 4.5 6 100 0 54 14 0 85 0 0.61 GGGGGA chr1 10146360 10146410 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 10147859 10147895 trf 5 7.2 5 93 0 63 58 38 2 0 1.13 AAACC chr1 10148331 10148380 trf 2 24.5 2 82 0 53 4 4 44 46 1.41 TG chr1 10156543 10156585 trf 12 3.5 12 86 0 57 26 64 0 9 1.24 CCACCACCTCCA chr1 10158868 10158903 trf 3 11.7 3 93 0 61 34 62 0 2 1.10 CAC chr1 10186630 10186744 trf 12 9.9 12 73 16 91 0 35 0 64 0.94 TTCTCTTCTCTC chr1 10186648 10186739 trf 7 13.4 7 89 6 82 0 36 0 63 0.94 TCTCTTC chr1 10186732 10186797 trf 4 15.5 4 98 1 103 0 47 0 52 1.00 CTTC chr1 10188408 10188466 trf 2 29.0 2 96 0 107 48 50 1 0 1.11 AC chr1 10193877 10193921 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 10196913 10196961 trf 11 4.5 11 78 5 53 81 18 0 0 0.70 AAAAAAAACCA chr1 10200514 10200614 trf 4 25.5 4 81 11 82 33 1 17 49 1.53 GTAT chr1 10200587 10200639 trf 12 4.2 12 75 4 50 23 0 26 50 1.50 TATGTGTGTGTA chr1 10201777 10201819 trf 4 10.5 4 94 0 75 50 50 0 0 1.00 AACC chr1 10208315 10208346 trf 8 3.9 8 95 0 53 87 3 9 0 0.66 AAAAAAAG chr1 10213550 10213580 trf 9 3.4 9 95 4 53 60 6 0 33 1.23 AATACTATA chr1 10216799 10216839 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 10219583 10219626 trf 2 21.5 2 95 0 77 51 2 46 0 1.13 AG chr1 10230774 10230808 trf 1 34.0 1 93 0 50 94 0 5 0 0.32 A chr1 10237625 10237661 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 10238683 10238722 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 10240083 10240142 trf 12 5.1 12 89 2 86 0 74 0 25 0.82 CCCCTCCTCCTC chr1 10240083 10240124 trf 11 3.6 11 96 3 73 0 80 0 19 0.71 CCCCTCCCCTC chr1 10240085 10240150 trf 3 22.3 3 74 12 55 0 70 0 29 0.87 CCT chr1 10241364 10241422 trf 8 7.2 8 80 0 62 0 22 25 51 1.48 GTCTCTGT chr1 10248814 10248864 trf 2 25.0 2 95 0 91 48 50 2 0 1.12 CA chr1 10253380 10253421 trf 4 10.2 4 94 0 73 73 0 0 26 0.84 AATA chr1 10254845 10254892 trf 2 23.5 2 95 0 85 48 48 0 2 1.13 CA chr1 10254935 10254963 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 10255003 10255048 trf 2 22.5 2 95 0 81 51 48 0 0 1.00 CA chr1 10258622 10258675 trf 2 27.0 2 96 3 99 49 50 0 0 1.00 AC chr1 10261409 10261465 trf 10 5.6 10 84 0 67 48 7 44 0 1.30 GAGAGAGAGA chr1 10261409 10261465 trf 4 14.0 4 88 0 67 48 7 44 0 1.30 GAGA chr1 10265560 10265596 trf 1 36.0 1 94 0 63 0 2 0 97 0.18 T chr1 10271613 10271656 trf 4 10.8 4 94 0 77 48 25 23 2 1.62 ACAG chr1 10271653 10271679 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 10271719 10271778 trf 4 15.2 4 89 7 95 27 1 23 47 1.61 ATGT chr1 10274404 10274431 trf 4 6.8 4 100 0 54 74 25 0 0 0.83 CAAA chr1 10274587 10274625 trf 3 12.7 3 100 0 76 34 0 31 34 1.58 TAG chr1 10278054 10278112 trf 2 29.0 2 96 0 107 50 48 1 0 1.11 CA chr1 10278952 10279008 trf 2 28.0 2 100 0 112 50 50 0 0 1.00 AC chr1 10284352 10284377 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 10285843 10286182 trf 4 87.2 4 73 5 185 0 48 4 46 1.23 CTCT chr1 10290829 10290988 trf 8 19.6 8 79 8 119 83 16 0 0 0.66 CAAAAAAA chr1 10290830 10290951 trf 1 121.0 1 80 0 116 88 11 0 0 0.52 A chr1 10294484 10294555 trf 4 17.8 4 100 0 142 25 23 0 50 1.49 TATC chr1 10304115 10304140 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 10313390 10313446 trf 2 28.0 2 96 0 103 1 0 48 50 1.11 TG chr1 10313445 10313487 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 GA chr1 10325357 10325412 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 10326507 10326596 trf 5 18.0 5 90 2 144 0 22 1 76 0.85 TCTTT chr1 10327451 10327553 trf 7 14.6 7 73 8 64 36 29 17 16 1.92 CACTGAA chr1 10327722 10327753 trf 4 7.8 4 100 0 62 51 25 0 22 1.48 ACAT chr1 10327759 10327795 trf 3 12.0 3 100 0 72 33 66 0 0 0.92 CAC chr1 10330391 10330469 trf 2 39.0 2 92 0 120 51 44 3 0 1.19 AC chr1 10333363 10333400 trf 3 12.3 3 100 0 74 67 32 0 0 0.91 ACA chr1 10338612 10338666 trf 12 4.5 12 85 0 63 24 25 22 27 2.00 TTAACTCAGGGC chr1 10339089 10339126 trf 2 18.5 2 100 0 74 0 48 0 51 1.00 TC chr1 10346694 10346787 trf 6 14.5 6 79 12 96 0 63 0 36 0.95 TCCCTC chr1 10351068 10351165 trf 4 24.8 4 91 4 153 0 72 0 27 0.85 CCTC chr1 10351081 10351251 trf 12 14.0 12 87 4 144 0 60 0 40 0.97 CCCTCCTTCCTT chr1 10351084 10351454 trf 8 45.8 8 91 3 220 0 44 0 55 0.99 TCCTTCCT chr1 10351162 10351454 trf 4 72.2 4 93 3 217 0 37 0 62 0.96 CCTT chr1 10351248 10351465 trf 4 53.8 4 95 1 290 0 32 0 67 0.91 CTTT chr1 10351474 10351575 trf 3 34.0 3 82 11 102 0 62 0 37 0.96 CTC chr1 10351568 10351610 trf 2 21.5 2 90 4 59 0 45 4 50 1.23 TC chr1 10352702 10352767 trf 4 16.0 4 96 3 121 26 24 0 49 1.51 ATCT chr1 10359051 10359089 trf 7 5.7 7 84 9 53 0 0 13 86 0.56 TTTTTGT chr1 10371618 10371668 trf 2 25.0 2 87 0 64 52 42 0 6 1.26 AC chr1 10371820 10371856 trf 5 7.2 5 100 0 72 38 19 0 41 1.52 TATCA chr1 10375674 10375701 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 10376138 10376719 trf 4 146.2 4 75 1 432 0 52 1 44 1.15 TCTC chr1 10380510 10380575 trf 2 32.5 2 96 0 121 49 49 0 1 1.10 CA chr1 10401438 10401478 trf 5 7.8 5 97 2 71 0 0 17 82 0.67 TTTTG chr1 10401615 10401653 trf 8 4.9 8 90 6 60 0 0 7 92 0.40 TTTTTTTG chr1 10401615 10401654 trf 1 39.0 1 84 0 51 0 0 7 92 0.39 T chr1 10404835 10404869 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 10410533 10410572 trf 6 6.7 6 88 11 55 0 10 2 87 0.65 TTTTCT chr1 10413312 10413347 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 10415818 10415917 trf 4 25.0 4 81 13 107 0 20 0 79 0.73 CTTT chr1 10415855 10415913 trf 6 9.2 6 92 7 89 0 15 0 84 0.62 TTTCTT chr1 10421295 10421329 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 10441126 10441179 trf 4 13.0 4 89 2 79 0 69 1 28 0.99 CCTC chr1 10442064 10442102 trf 4 9.5 4 100 0 76 26 23 0 50 1.50 ATTC chr1 10443484 10443519 trf 11 3.2 11 100 0 70 45 0 28 25 1.54 GATGGTATAAA chr1 10451846 10451892 trf 4 11.0 4 81 9 56 30 0 67 2 1.03 GGAG chr1 10457226 10457251 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 10457547 10457582 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 10457581 10457629 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 10462129 10462170 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 10463822 10463861 trf 4 9.8 4 100 0 78 23 25 0 51 1.49 TCTA chr1 10463858 10463919 trf 4 15.2 4 89 0 86 1 29 22 45 1.62 TCTG chr1 10468049 10468074 trf 9 2.8 9 100 0 50 8 0 48 44 1.32 GGTGTTGAT chr1 10476670 10476705 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 10481476 10481517 trf 5 8.2 5 100 0 82 80 19 0 0 0.71 AAAAC chr1 10482447 10482512 trf 2 32.5 2 84 0 76 41 1 7 49 1.41 TA chr1 10486094 10486235 trf 4 35.5 4 72 4 88 12 0 42 44 1.42 GTGT chr1 10490493 10490547 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 10490546 10490591 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 10493764 10493817 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 10500500 10500664 trf 6 27.3 6 94 1 159 50 0 50 0 1.00 GAAGAG chr1 10500505 10500697 trf 3 64.7 3 84 2 109 44 0 55 0 0.99 AGG chr1 10506536 10506590 trf 12 4.5 12 81 9 56 0 40 0 59 0.98 TCCTTTTTCCTC chr1 10506562 10506864 trf 5 60.6 5 79 14 241 0 43 0 55 1.05 TCCTT chr1 10506802 10506999 trf 10 19.3 10 76 13 89 0 47 0 52 1.00 TTCCCTTCTC chr1 10506820 10506922 trf 5 19.8 5 83 9 116 0 58 0 41 0.98 TTCCC chr1 10506947 10507001 trf 5 10.8 5 100 0 108 0 40 0 59 0.98 TCTCT chr1 10507362 10507387 trf 11 2.3 11 100 0 50 24 8 28 40 1.83 TTGGGAATCAT chr1 10509171 10509215 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 10509214 10509248 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 10522922 10523024 trf 6 17.3 6 95 4 190 50 33 16 0 1.46 CAAGAC chr1 10526640 10526680 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 10527809 10527914 trf 2 52.5 2 96 0 192 0 51 0 48 1.00 TC chr1 10536329 10536368 trf 2 19.5 2 100 0 78 0 51 0 48 1.00 CT chr1 10537515 10537566 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 10539408 10539434 trf 12 2.2 12 100 0 52 30 15 0 53 1.42 TTTTTATCACAA chr1 10550595 10550622 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 10550842 10550913 trf 4 17.8 4 88 0 97 0 7 49 43 1.29 TGTG chr1 10555158 10555205 trf 2 23.5 2 95 0 85 48 0 51 0 1.00 AG chr1 10560218 10560271 trf 3 17.7 3 100 0 106 33 33 32 0 1.58 CAG chr1 10572149 10572177 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 10576153 10576329 trf 4 48.2 4 76 21 156 1 46 0 52 1.08 TCTC chr1 10576326 10576359 trf 4 8.2 4 100 0 66 0 24 0 75 0.80 TCTT chr1 10586102 10586159 trf 2 28.5 2 96 0 105 0 1 49 49 1.11 TG chr1 10586678 10586742 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 CT chr1 10588580 10588625 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 10590382 10590506 trf 5 25.8 5 70 18 86 37 0 60 1 1.12 GAGGA chr1 10590447 10590524 trf 7 10.4 7 72 10 55 35 1 63 0 1.03 GAGAGGG chr1 10595851 10595907 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 10597195 10597227 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 10608576 10608682 trf 8 13.2 8 83 7 90 36 0 62 0 1.02 AGGGAGAG chr1 10608579 10608685 trf 12 9.2 12 77 12 78 37 0 61 0 1.03 GAGAGAGGGAGA chr1 10608606 10608678 trf 4 18.0 4 91 0 90 33 0 66 0 0.92 GGAG chr1 10608647 10608685 trf 2 19.0 2 88 0 58 44 0 55 0 0.99 GA chr1 10609778 10609813 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 10612990 10613047 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 10613049 10613101 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 10615754 10615782 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 10626069 10626100 trf 4 7.8 4 100 0 62 77 0 0 22 0.77 AAAT chr1 10626097 10626184 trf 4 21.8 4 81 9 97 72 0 24 3 1.00 AAAG chr1 10629642 10629670 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 10629817 10629859 trf 2 21.0 2 85 0 57 47 4 2 45 1.36 TA chr1 10630372 10630426 trf 4 13.5 4 100 0 108 0 24 0 75 0.80 TTCT chr1 10633274 10633316 trf 7 5.6 7 84 15 57 0 2 16 80 0.81 TTTTTTG chr1 10640853 10640891 trf 2 19.0 2 94 0 67 50 47 0 2 1.15 CA chr1 10640890 10640949 trf 2 29.5 2 96 0 109 49 0 50 0 1.00 AG chr1 10643407 10643461 trf 10 5.4 10 75 16 58 0 7 35 57 1.27 TTTGTTGGGT chr1 10644367 10644429 trf 6 10.3 6 85 0 70 0 40 9 50 1.35 TCTCTC chr1 10644367 10644429 trf 4 15.5 4 82 0 70 0 40 9 50 1.35 TCTC chr1 10644369 10644428 trf 12 4.9 12 87 0 82 0 38 10 50 1.36 TCTCTCTCTCTG chr1 10644428 10644486 trf 2 29.0 2 96 0 107 50 48 0 1 1.11 CA chr1 10646886 10646967 trf 6 13.8 6 93 5 121 0 37 12 50 1.40 TCTCTG chr1 10650548 10650611 trf 2 31.5 2 100 0 126 49 0 50 0 1.00 GA chr1 10652052 10652125 trf 4 18.0 4 73 12 60 69 27 1 1 1.04 CAAA chr1 10654009 10654064 trf 9 6.1 10 87 10 59 72 27 0 0 0.85 AAACAACAAC chr1 10654010 10654048 trf 3 12.7 3 94 0 67 71 28 0 0 0.87 AAC chr1 10668118 10668146 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 CAAA chr1 10669675 10669712 trf 4 8.8 4 94 5 56 0 0 21 78 0.75 TTTG chr1 10672335 10672417 trf 2 41.5 2 87 2 94 42 0 57 0 0.98 GA chr1 10673043 10673095 trf 2 26.0 2 96 0 95 48 50 0 1 1.12 AC chr1 10673909 10673979 trf 4 17.8 4 91 2 115 25 24 1 48 1.59 CTAT chr1 10674112 10674145 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 AAAC chr1 10676681 10676731 trf 2 25.0 2 91 0 82 54 46 0 0 1.00 CA chr1 10683718 10683759 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 10683758 10684057 trf 4 74.2 4 87 4 235 0 36 0 62 0.98 TTCT chr1 10685858 10685900 trf 5 8.4 5 100 0 84 80 19 0 0 0.70 AAACA chr1 10696825 10696868 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 10698110 10698198 trf 8 11.0 8 80 0 50 50 31 0 18 1.47 ATACACAC chr1 10698140 10698171 trf 2 15.5 2 93 0 53 54 45 0 0 0.99 AC chr1 10702177 10702207 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 10708267 10708292 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 10708326 10708475 trf 8 18.9 8 72 8 99 14 1 35 48 1.52 TATGTGTG chr1 10708328 10708469 trf 12 11.2 12 70 8 84 14 1 36 48 1.52 TGTGTGTATGTG chr1 10709704 10709743 trf 2 19.5 2 89 0 60 0 5 48 46 1.24 TG chr1 10710855 10710958 trf 4 26.0 4 94 2 118 66 0 32 0 0.98 AAGA chr1 10710868 10711068 trf 12 16.8 12 93 1 159 50 0 49 0 1.00 AGAGAGAGAGAG chr1 10710868 10711068 trf 8 25.1 8 95 1 159 50 0 49 0 1.00 AGAGAGAG chr1 10710955 10711068 trf 4 28.2 4 98 0 109 38 0 61 0 0.96 AGAG chr1 10714164 10714272 trf 4 27.2 4 97 1 191 48 0 25 26 1.52 ATAG chr1 10721828 10721878 trf 6 7.8 6 84 6 55 78 0 2 20 0.86 AAAAAT chr1 10722295 10722337 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 10724295 10724328 trf 7 4.7 7 85 14 50 87 12 0 0 0.53 AAAAAAC chr1 10726778 10726811 trf 2 16.5 2 93 0 57 51 45 0 3 1.16 AC chr1 10728922 10728952 trf 4 7.5 4 100 0 60 0 0 23 76 0.78 TTGT chr1 10738947 10739021 trf 2 37.5 2 97 2 141 0 48 0 51 1.00 TC chr1 10743157 10743189 trf 12 2.7 12 90 0 55 81 18 0 0 0.70 AAAAAAACAAAC chr1 10747589 10747624 trf 12 2.8 12 86 4 52 85 0 14 0 0.59 GAAAAAAAAAAA chr1 10747621 10747648 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 10748342 10748378 trf 4 8.8 4 93 6 63 77 22 0 0 0.76 AAAC chr1 10753086 10753115 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 10755546 10755644 trf 3 33.3 3 73 8 67 1 56 0 42 1.06 TCC chr1 10756752 10756788 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 10757969 10758051 trf 4 20.8 4 89 2 121 24 29 0 46 1.53 TATC chr1 10760577 10760626 trf 4 12.2 4 91 0 80 0 24 4 71 1.03 TCTT chr1 10768283 10768347 trf 2 33.0 2 75 6 51 40 0 10 48 1.38 TA chr1 10768291 10768318 trf 11 2.5 11 100 0 54 44 0 7 48 1.31 TATATGTAATA chr1 10768880 10768919 trf 4 9.8 4 100 0 78 51 23 0 25 1.49 ATAC chr1 10777667 10777753 trf 5 17.2 5 100 0 172 60 0 39 0 0.97 AGAAG chr1 10780053 10780162 trf 3 36.3 3 76 20 86 36 0 25 37 1.57 TAG chr1 10780160 10780234 trf 2 37.0 2 88 0 112 1 1 47 50 1.18 GT chr1 10780457 10780493 trf 4 9.0 4 93 0 63 72 25 2 0 0.98 AAAC chr1 10781145 10781199 trf 4 13.5 4 88 0 81 29 0 20 50 1.49 GTAT chr1 10785069 10785111 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 10786709 10786784 trf 2 37.5 2 89 0 114 4 1 45 49 1.29 TG chr1 10793685 10793717 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 AT chr1 10793813 10793866 trf 2 26.5 2 92 0 88 49 1 1 47 1.23 AT chr1 10797279 10797348 trf 9 7.7 9 79 11 79 0 0 18 81 0.70 GTTTTTTTT chr1 10804095 10804130 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 10808732 10808789 trf 2 28.5 2 96 0 96 50 45 0 3 1.18 AC chr1 10808848 10808883 trf 3 11.7 3 93 0 61 62 34 0 2 1.10 CAA chr1 10814103 10814131 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 CAAA chr1 10831300 10831340 trf 4 9.8 4 97 2 71 77 22 0 0 0.77 AAAC chr1 10832367 10832418 trf 2 25.5 2 91 0 84 3 0 45 50 1.20 TG chr1 10836644 10836701 trf 2 28.5 2 100 0 114 0 0 50 49 1.00 GT chr1 10837471 10837510 trf 4 9.8 4 100 0 78 25 0 48 25 1.51 GATG chr1 10843875 10843911 trf 2 18.0 2 94 0 63 50 47 0 2 1.15 AC chr1 10846670 10846717 trf 8 5.8 8 85 5 67 87 12 0 0 0.55 AAAAAACA chr1 10846670 10846717 trf 12 3.9 11 86 13 58 87 12 0 0 0.55 AAAAAAAAAAC chr1 10851177 10851230 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 10853635 10853672 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 10861097 10861171 trf 4 18.0 4 88 5 112 70 1 28 0 0.96 AAGA chr1 10861920 10861956 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 10865869 10865952 trf 4 20.8 4 89 0 76 39 9 2 48 1.49 ATAT chr1 10866657 10866719 trf 2 32.0 2 80 6 65 1 41 0 56 1.09 CT chr1 10867957 10868030 trf 2 37.0 2 91 2 121 50 1 47 0 1.09 AG chr1 10868026 10868119 trf 6 15.5 6 91 4 152 47 0 52 0 1.00 AGAGGA chr1 10868621 10868654 trf 3 11.0 3 100 0 66 0 66 0 33 0.92 TCC chr1 10879850 10879902 trf 8 6.8 8 82 4 54 86 13 0 0 0.57 CAAAAAAA chr1 10879859 10879888 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 10880763 10880828 trf 2 33.0 2 87 9 98 47 3 0 49 1.17 AT chr1 10881338 10881367 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 10898145 10898217 trf 8 9.0 8 86 4 65 79 15 5 0 0.91 AAAACAAA chr1 10898146 10898192 trf 4 11.8 4 95 4 85 78 21 0 0 0.76 AAAC chr1 10900126 10900175 trf 2 24.5 2 95 0 89 2 0 46 51 1.12 TG chr1 10900722 10900755 trf 4 8.2 4 100 0 66 24 0 0 75 0.80 TTAT chr1 10904672 10904718 trf 4 11.8 4 81 9 51 0 0 19 80 0.71 TGTT chr1 10904675 10904715 trf 11 3.5 11 84 15 55 0 0 17 82 0.67 TTTTTTGTTTG chr1 10905241 10905272 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 10906528 10906725 trf 6 32.5 6 71 11 125 0 42 13 44 1.43 CTGTCT chr1 10906532 10906744 trf 12 17.5 12 75 18 156 0 43 12 44 1.41 CTCTCTCTCTGC chr1 10908783 10908860 trf 4 20.0 4 89 7 124 0 77 0 22 0.76 CTCC chr1 10926221 10926252 trf 10 3.1 10 100 0 62 48 29 22 0 1.51 GAACACAGCA chr1 10927367 10927501 trf 6 22.8 6 90 4 121 58 14 26 0 1.36 AAGAAC chr1 10927369 10927479 trf 12 8.9 12 92 4 139 56 16 27 0 1.40 GAACAAGAACAG chr1 10927457 10927514 trf 9 6.6 9 82 15 75 68 8 21 1 1.26 AAGAACAAG chr1 10930205 10930314 trf 5 22.0 5 97 0 139 53 0 26 20 1.46 AATAG chr1 10935854 10935885 trf 4 7.8 4 100 0 62 0 22 0 77 0.77 TTTC chr1 10937546 10937583 trf 4 9.2 4 100 0 74 0 24 24 51 1.49 TCTG chr1 10938243 10938325 trf 2 41.5 2 90 2 121 50 4 45 0 1.23 GA chr1 10939581 10939610 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 10940298 10940323 trf 12 2.1 12 100 0 50 28 0 8 64 1.22 ATTTATTGATTT chr1 10942795 10942822 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 10944105 10944136 trf 4 7.8 4 92 0 53 48 22 0 29 1.51 CATA chr1 10948791 10948858 trf 2 34.0 2 96 3 127 49 50 0 0 1.00 CA chr1 10951446 10951490 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 10954459 10954485 trf 8 3.2 8 100 0 52 0 38 11 50 1.39 CTCTCTGT chr1 10960581 10960678 trf 4 24.5 4 95 2 178 0 24 0 75 0.81 TTTC chr1 10960675 10960718 trf 4 10.8 4 100 0 86 0 48 0 51 1.00 CTTC chr1 10963356 10963387 trf 12 2.6 12 94 0 53 48 12 0 38 1.42 ATATATATACAC chr1 10967925 10968002 trf 4 18.8 4 92 5 118 71 0 28 0 0.86 AAAG chr1 10968205 10968244 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 10981800 10981837 trf 8 4.6 8 93 0 65 37 21 37 2 1.68 AGAGCGCA chr1 10983714 10983740 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 10986321 10986388 trf 4 16.8 4 92 0 98 26 0 68 4 1.08 GAGG chr1 10993333 10993368 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 10993715 10993742 trf 9 3.0 9 100 0 54 11 22 55 11 1.66 TGGCGGCAG chr1 10995631 10995694 trf 4 15.8 4 77 12 58 71 25 3 0 1.01 CAAA chr1 10997807 10997859 trf 6 9.2 6 79 12 65 44 17 1 36 1.60 TACATA chr1 10998669 10998705 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 10998724 10998755 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 11003032 11003087 trf 8 6.6 8 85 8 65 50 34 14 0 1.43 ACACAGAC chr1 11003034 11003075 trf 4 10.8 4 84 10 59 51 29 19 0 1.47 ACAG chr1 11009543 11009642 trf 5 19.8 5 98 0 153 5 20 14 60 1.52 TTCTG chr1 11010071 11010168 trf 5 19.4 5 98 0 176 0 61 0 38 0.96 CTCCT chr1 11014650 11014707 trf 2 29.0 2 79 10 55 42 1 7 49 1.40 AT chr1 11015218 11015244 trf 6 4.3 6 100 0 52 34 15 50 0 1.45 AGGCAG chr1 11015645 11015789 trf 6 23.3 6 77 20 131 38 11 49 0 1.43 AGGCAG chr1 11015645 11015791 trf 12 11.8 12 91 7 199 39 10 49 0 1.43 AGGCAGAGAGAG chr1 11015679 11015823 trf 8 18.5 8 75 24 116 40 9 49 0 1.41 AGAGGCAG chr1 11016151 11016259 trf 5 21.8 5 90 5 121 0 65 0 34 0.93 CTCTC chr1 11016255 11016335 trf 8 9.5 8 89 5 97 0 40 10 50 1.36 CTCTGTCT chr1 11016260 11016333 trf 10 7.7 10 93 3 100 0 39 9 50 1.35 TCTCTCTGTC chr1 11016336 11016379 trf 2 21.5 2 90 0 68 4 0 44 51 1.22 TG chr1 11016706 11016756 trf 1 50.0 1 79 0 55 90 10 0 0 0.47 A chr1 11020128 11020174 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 11023709 11023748 trf 12 3.5 12 80 20 57 48 7 25 17 1.74 AGAAGTACAAGT chr1 11033083 11033135 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 11036459 11036489 trf 3 10.3 3 92 7 53 66 33 0 0 0.92 CAA chr1 11038112 11038157 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 11046305 11046341 trf 2 18.0 2 88 0 54 50 44 0 5 1.25 CA chr1 11047857 11047886 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 ACAA chr1 11053485 11053532 trf 4 11.8 4 100 0 94 23 0 0 76 0.78 TTTA chr1 11056102 11056138 trf 3 11.7 3 94 5 63 66 30 0 2 1.06 AAC chr1 11060660 11060766 trf 8 13.2 8 79 0 77 0 60 2 36 1.12 TCCCTCCC chr1 11060672 11060773 trf 8 12.6 8 79 0 94 0 58 1 39 1.09 TCCCTCTT chr1 11062057 11062087 trf 2 15.0 2 92 0 51 50 46 0 3 1.18 CA chr1 11062086 11062185 trf 6 16.5 6 91 0 144 48 4 47 0 1.20 AGAGAG chr1 11062086 11062185 trf 4 24.8 4 89 0 144 48 4 47 0 1.20 AGAG chr1 11065984 11066045 trf 2 31.0 2 95 3 106 0 0 47 52 1.00 TG chr1 11074619 11074734 trf 8 14.8 8 78 8 112 0 62 0 36 1.01 CCCTTCCT chr1 11074632 11074707 trf 12 6.2 12 85 0 105 1 62 0 36 1.04 CCTCCCTTCCTC chr1 11076062 11076087 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 11078577 11078620 trf 7 6.3 7 86 2 61 69 27 0 2 1.00 AAACCAA chr1 11086137 11086180 trf 6 7.3 6 86 7 54 0 0 20 79 0.74 TTGTTT chr1 11087453 11087505 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 11100285 11100317 trf 2 16.0 2 93 0 55 53 0 46 0 1.00 GA chr1 11100454 11100509 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 11102305 11102351 trf 2 23.0 2 95 0 83 0 0 47 52 1.00 TG chr1 11117406 11117457 trf 2 25.5 2 100 0 102 49 0 50 0 1.00 GA chr1 11117479 11117518 trf 12 3.2 12 78 7 51 30 17 10 41 1.83 TGCATATACTAT chr1 11124580 11124715 trf 4 33.8 4 81 3 137 47 2 28 21 1.65 ATAG chr1 11125914 11126093 trf 6 29.8 6 70 16 59 10 1 37 50 1.45 TGTGTA chr1 11125914 11125962 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 11127607 11127652 trf 10 4.4 10 83 5 63 0 0 15 84 0.62 TTTTTTGTTT chr1 11127614 11127652 trf 9 4.5 8 87 12 58 0 0 15 84 0.63 TTTTGTTT chr1 11133439 11133471 trf 4 7.8 4 93 6 55 0 0 21 78 0.76 TTTG chr1 11133622 11133681 trf 4 15.2 4 85 7 86 0 0 20 79 0.73 GTTT chr1 11142195 11142287 trf 12 7.7 12 92 0 85 9 25 1 64 1.31 TATCTATCTTTC chr1 11142197 11142284 trf 8 10.9 8 92 0 84 8 25 1 65 1.27 TCTATCTT chr1 11142217 11142280 trf 4 15.8 4 94 0 108 1 25 1 71 1.04 TCTT chr1 11145034 11145078 trf 2 21.5 2 95 4 79 50 47 0 2 1.13 AC chr1 11145077 11145110 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 11146117 11146161 trf 4 11.2 4 90 4 72 75 25 0 0 0.81 CAAA chr1 11150468 11150507 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 11150647 11150688 trf 4 10.2 4 100 0 82 24 0 0 75 0.80 TTAT chr1 11152400 11152453 trf 2 26.5 2 96 0 97 0 0 47 52 1.00 TG chr1 11152936 11153013 trf 2 39.0 2 92 2 111 45 49 3 1 1.28 CA chr1 11157082 11157148 trf 2 33.0 2 75 0 60 45 42 4 7 1.53 AC chr1 11161464 11161549 trf 4 21.0 4 92 7 145 1 49 0 49 1.08 TTCC chr1 11161553 11161605 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 11163695 11163744 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 11164637 11164681 trf 2 22.0 2 90 0 70 4 0 47 47 1.22 TG chr1 11166868 11166901 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 11166900 11166945 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 11167703 11167742 trf 10 3.8 10 82 3 51 0 0 33 66 0.92 TTTGTTTTGG chr1 11171542 11171569 trf 4 6.8 4 100 0 54 0 0 25 74 0.83 TTGT chr1 11172537 11172580 trf 4 10.8 4 100 0 86 25 0 0 74 0.82 TATT chr1 11173048 11173086 trf 5 7.2 5 94 5 58 0 0 21 78 0.74 GTTTT chr1 11174405 11174473 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 11174549 11174601 trf 4 13.0 4 79 0 50 7 1 42 48 1.43 TGTG chr1 11174549 11174601 trf 6 8.7 6 78 0 50 7 1 42 48 1.43 TGTGTG chr1 11174663 11174709 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 11179138 11179170 trf 4 8.0 4 100 0 64 25 0 25 50 1.50 TGTA chr1 11185229 11185255 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 11186034 11186067 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 11192000 11192182 trf 4 47.2 4 83 13 204 0 53 0 46 1.00 TCCT chr1 11192068 11192107 trf 10 3.9 10 93 0 60 0 74 0 25 0.82 CCCTCCCCTC chr1 11194731 11194878 trf 5 31.8 5 96 2 158 0 24 0 75 0.80 TTTTC chr1 11196129 11196172 trf 2 22.0 2 85 4 61 53 44 0 2 1.13 AC chr1 11202578 11202617 trf 4 9.8 4 88 0 60 46 23 0 30 1.53 CATA chr1 11202953 11202994 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 11210375 11210402 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 11214165 11214190 trf 12 2.1 12 100 0 50 44 40 8 8 1.63 ATGCACACACAC chr1 11220064 11220113 trf 2 24.5 2 100 0 98 48 51 0 0 1.00 CA chr1 11222822 11222864 trf 4 10.8 4 94 5 77 76 0 0 23 0.79 AAAT chr1 11222952 11222999 trf 4 12.0 4 82 13 62 78 21 0 0 0.75 AAAC chr1 11224451 11224502 trf 3 16.7 3 91 4 66 25 0 5 68 1.12 TTA chr1 11224725 11224756 trf 4 8.0 4 92 7 55 77 22 0 0 0.77 AAAC chr1 11232496 11232527 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 11232796 11232838 trf 6 7.0 6 100 0 84 0 50 0 50 1.00 TCTTCC chr1 11232877 11232956 trf 8 9.9 8 91 0 122 0 51 2 45 1.14 CTCCCTTT chr1 11237354 11237393 trf 1 39.0 1 100 0 78 100 0 0 0 0.00 A chr1 11245014 11245055 trf 7 5.9 7 100 0 82 14 29 41 14 1.86 GGCTCAG chr1 11246461 11246515 trf 2 27.0 2 88 0 81 0 0 44 55 0.99 TG chr1 11250602 11250648 trf 2 23.0 2 90 0 74 50 45 0 4 1.21 CA chr1 11253644 11253678 trf 4 8.5 4 100 0 68 26 0 23 50 1.50 TATG chr1 11257304 11257360 trf 3 18.7 3 81 0 58 62 7 3 26 1.38 TAA chr1 11258040 11258074 trf 12 2.8 12 95 0 59 5 35 17 41 1.74 GCTCTAGCTCTT chr1 11263963 11263997 trf 12 2.8 12 95 0 59 5 35 17 41 1.74 GCTCTAGCTCTT chr1 11279675 11279718 trf 5 8.6 5 92 7 70 0 2 18 79 0.85 TTTGT chr1 11284546 11284591 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 11287528 11287564 trf 2 18.0 2 88 0 54 50 5 0 44 1.25 TA chr1 11289900 11289955 trf 4 13.8 4 96 0 101 27 0 47 25 1.52 ATGG chr1 11290458 11290496 trf 8 4.6 8 87 6 58 89 10 0 0 0.49 AAAAAAAC chr1 11291082 11291144 trf 4 15.5 4 96 0 115 25 0 72 1 0.94 GAGG chr1 11292543 11292588 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 11292734 11292799 trf 2 33.0 2 93 3 114 50 47 0 1 1.10 CA chr1 11292737 11292852 trf 8 14.0 8 81 5 77 51 34 0 13 1.42 ACACACAT chr1 11299678 11299731 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 11305271 11305316 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 11309401 11309463 trf 6 10.8 6 77 22 71 85 14 0 0 0.60 AAAAAC chr1 11309402 11309462 trf 5 12.8 5 82 7 65 85 15 0 0 0.61 AAAAC chr1 11309407 11309452 trf 7 6.3 7 80 14 56 86 13 0 0 0.57 AAAACAA chr1 11313824 11313869 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 11313868 11313909 trf 6 6.7 6 94 5 73 82 0 17 0 0.66 AAAGAA chr1 11314539 11314616 trf 5 15.6 5 98 1 147 0 18 0 81 0.68 TTTCT chr1 11317206 11317232 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 11319072 11319231 trf 2 79.5 2 79 0 147 42 45 8 3 1.51 AC chr1 11320756 11320793 trf 4 9.2 4 100 0 74 0 24 24 51 1.49 TGTC chr1 11338945 11339054 trf 8 13.6 8 93 0 164 0 42 9 48 1.35 CTTCCTTG chr1 11338985 11339110 trf 8 15.6 8 92 0 124 0 54 4 41 1.19 CTTCCCTC chr1 11339111 11339159 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 11339652 11339735 trf 2 41.5 2 88 0 112 2 3 43 50 1.32 GT chr1 11341297 11341334 trf 4 9.2 4 100 0 74 75 0 0 24 0.80 AAAT chr1 11341793 11341819 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 11343124 11343158 trf 6 5.8 6 86 6 52 0 20 0 79 0.73 TTTCTT chr1 11343156 11343239 trf 6 13.5 6 83 5 94 1 45 0 53 1.08 CTCTTC chr1 11356117 11356159 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 11358910 11358988 trf 5 15.8 5 81 10 65 0 0 25 74 0.82 TTTTG chr1 11370997 11371086 trf 5 18.2 5 77 20 75 0 0 16 83 0.65 TGTTT chr1 11370999 11371088 trf 1 89.0 1 68 0 52 0 0 15 84 0.63 T chr1 11372210 11372251 trf 6 6.5 6 83 10 55 0 2 17 80 0.82 TTTGTT chr1 11376790 11376823 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 11379660 11379689 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 11385865 11385905 trf 4 9.5 4 84 10 53 22 2 0 75 0.93 TTTA chr1 11397477 11397514 trf 12 3.1 12 88 11 58 0 0 18 81 0.70 TTTTTTGTTTTG chr1 11397753 11397808 trf 2 27.5 2 84 0 74 49 7 0 43 1.30 TA chr1 11399004 11399029 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 11402287 11402314 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 11402313 11402340 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 11414954 11415000 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 11419390 11419421 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 11432602 11432647 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 11437846 11437888 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 11441790 11441836 trf 1 46.0 1 100 0 92 0 0 0 100 0.00 T chr1 11444629 11444732 trf 10 10.3 10 83 8 68 69 29 0 0 0.94 AAAAACAAAC chr1 11444662 11444799 trf 5 27.0 5 89 2 202 63 35 1 0 1.04 CAAAC chr1 11454173 11454198 trf 12 2.1 12 100 0 50 28 16 16 40 1.89 ATTGCTTCAAGT chr1 11459828 11459868 trf 10 4.0 10 93 0 71 40 32 10 17 1.83 GTACACACAT chr1 11464285 11464330 trf 2 22.5 2 95 0 81 51 46 0 2 1.13 AC chr1 11464331 11464376 trf 2 22.5 2 95 0 81 48 0 51 0 1.00 AG chr1 11465980 11466097 trf 9 12.1 9 73 20 94 47 0 52 0 1.06 AGGAGAAGG chr1 11466007 11466097 trf 3 30.3 3 72 10 60 44 1 54 0 1.07 AGG chr1 11466451 11466487 trf 4 9.0 4 93 0 54 69 25 5 0 1.10 AAAC chr1 11466646 11466705 trf 2 29.5 2 89 0 91 1 49 0 49 1.11 TC chr1 11466969 11467003 trf 4 8.0 4 96 3 50 76 23 0 0 0.79 AAAC chr1 11467431 11467462 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 11469676 11469719 trf 3 14.3 3 100 0 86 32 67 0 0 0.91 CAC chr1 11472321 11472375 trf 5 10.8 5 100 0 108 18 0 0 81 0.69 TTTTA chr1 11479023 11479159 trf 4 34.5 4 97 2 258 0 25 0 74 0.82 CTTT chr1 11479317 11479364 trf 4 11.8 4 100 0 94 23 0 0 76 0.78 TTTA chr1 11479404 11479448 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 11480244 11480350 trf 5 21.0 5 97 0 122 0 29 0 70 0.87 CTTTT chr1 11488965 11489022 trf 2 28.5 2 78 0 51 7 5 42 45 1.53 GT chr1 11491233 11491305 trf 2 36.0 2 94 0 126 52 0 47 0 1.00 GA chr1 11499339 11499386 trf 2 23.5 2 95 0 85 48 48 0 2 1.13 AC chr1 11504493 11504533 trf 4 10.0 4 91 0 53 67 0 30 2 1.04 GAAA chr1 11506020 11506068 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 11510828 11510859 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 11515520 11515569 trf 2 24.5 2 100 0 98 48 51 0 0 1.00 CA chr1 11517474 11517540 trf 2 33.5 2 93 3 116 0 53 0 46 1.00 CT chr1 11517539 11517575 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 11518184 11518223 trf 4 9.8 4 88 0 60 25 20 0 53 1.45 CTAT chr1 11524140 11524181 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 11525725 11525764 trf 2 20.0 2 86 5 53 48 0 5 46 1.24 AT chr1 11527051 11527083 trf 2 16.0 2 93 0 55 50 3 46 0 1.17 AG chr1 11527286 11527320 trf 4 8.8 4 93 6 61 76 23 0 0 0.79 AAAC chr1 11536619 11536741 trf 5 23.2 5 76 21 85 1 36 0 62 1.05 TCCTT chr1 11536619 11536667 trf 12 3.9 12 77 2 51 0 39 0 60 0.97 TCCTTTCTTTCT chr1 11536643 11536741 trf 12 8.6 12 71 22 77 2 35 0 62 1.07 TTCCTTTCCTTT chr1 11538134 11538164 trf 4 7.5 4 100 0 60 23 0 0 76 0.78 TTTA chr1 11539445 11539482 trf 8 4.2 9 87 12 51 0 10 43 45 1.39 TGTGTGCTG chr1 11539949 11540024 trf 4 18.8 4 97 0 87 66 0 33 0 0.92 AAAG chr1 11541693 11541743 trf 4 12.5 4 78 0 55 24 0 50 26 1.50 ATGG chr1 11546448 11546499 trf 5 10.0 5 83 12 52 80 17 1 0 0.81 CAAAA chr1 11546449 11546501 trf 6 8.8 6 85 14 65 80 17 1 0 0.80 AAAACA chr1 11546456 11546501 trf 11 4.0 11 83 16 65 80 17 2 0 0.82 AAAACAAAAAC chr1 11558206 11558245 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 11559245 11559283 trf 4 9.5 4 94 0 67 28 0 21 50 1.49 ATTG chr1 11561358 11561414 trf 2 28.0 2 88 0 85 0 5 48 46 1.25 GT chr1 11562229 11562256 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 11562487 11562618 trf 4 33.0 4 84 4 149 47 0 51 0 1.06 GGAA chr1 11564303 11564330 trf 12 2.2 12 100 0 54 29 14 11 44 1.80 GTTTTAAACCTA chr1 11564447 11564611 trf 6 28.3 6 67 24 77 0 64 0 34 1.03 TCTCCC chr1 11564447 11564611 trf 12 14.0 12 68 20 89 0 64 0 34 1.03 TCTCCCTCCCTC chr1 11565898 11565930 trf 4 8.0 4 92 0 55 0 21 28 50 1.49 CTGT chr1 11582246 11582397 trf 4 38.5 4 91 4 245 49 1 24 25 1.58 TAGA chr1 11584676 11584709 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 11584682 11584730 trf 10 4.8 10 89 0 51 10 2 39 47 1.49 TGTGTGTATA chr1 11586678 11586756 trf 2 39.0 2 81 0 84 5 1 43 50 1.32 GT chr1 11587339 11587378 trf 4 9.8 4 100 0 78 76 23 0 0 0.78 AAAC chr1 11601162 11601212 trf 7 6.7 7 86 8 64 80 20 0 0 0.72 AAAAACA chr1 11603074 11603112 trf 2 19.0 2 94 0 67 0 0 47 52 1.00 GT chr1 11603146 11603208 trf 2 31.0 2 84 12 83 50 0 46 3 1.17 GA chr1 11605078 11605211 trf 4 33.0 4 84 3 160 51 3 22 23 1.62 ATAG chr1 11607729 11607778 trf 12 4.3 11 92 5 62 0 0 16 83 0.64 TTTGTTTGTTT chr1 11607733 11607777 trf 6 7.5 6 89 5 72 0 0 15 84 0.63 TTTGTT chr1 11610150 11610180 trf 4 7.5 4 100 0 60 0 50 0 50 1.00 TCCT chr1 11612044 11612089 trf 1 45.0 1 100 0 90 0 0 0 100 0.00 T chr1 11612138 11612207 trf 5 14.0 5 86 8 97 1 0 17 81 0.77 TTTTG chr1 11628557 11628591 trf 4 8.5 4 100 0 68 23 0 0 76 0.79 TTTA chr1 11630295 11630370 trf 2 38.0 2 97 2 143 0 49 0 50 1.00 TC chr1 11641595 11641628 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 11648264 11648293 trf 2 14.5 2 100 0 58 0 48 0 51 1.00 TC chr1 11648292 11648321 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 11649326 11649362 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 11649783 11649830 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 11650738 11650868 trf 2 64.5 2 84 1 89 36 4 10 49 1.57 TA chr1 11652648 11652685 trf 2 18.5 2 100 0 74 0 0 51 48 1.00 GT chr1 11655637 11655668 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 11658667 11658733 trf 2 33.0 2 100 0 132 50 0 50 0 1.00 GA chr1 11660650 11660685 trf 6 5.7 6 93 6 61 68 0 0 31 0.90 TAAATA chr1 11670885 11670932 trf 7 6.7 7 85 0 67 46 0 8 44 1.33 ATAATGT chr1 11671777 11671804 trf 4 6.8 4 100 0 54 77 0 0 22 0.76 AAAT chr1 11687969 11688028 trf 12 5.2 11 75 20 59 77 22 0 0 0.76 ACAAACAAAAA chr1 11687969 11688028 trf 8 8.3 7 78 10 50 77 22 0 0 0.76 ACAAAAA chr1 11696517 11696557 trf 5 8.8 5 89 10 52 0 0 20 80 0.72 GTTTT chr1 11705043 11705107 trf 8 7.9 8 84 10 76 81 18 0 0 0.70 AAAAAACA chr1 11705046 11705099 trf 4 14.0 4 80 11 67 81 18 0 0 0.70 AAAC chr1 11706131 11706159 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 CAAA chr1 11709055 11709103 trf 12 4.4 11 84 10 55 2 54 0 43 1.12 CTCTCTCTCTC chr1 11721700 11721744 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 11731952 11731998 trf 4 12.0 4 86 9 69 73 23 2 0 0.94 AAAC chr1 11741346 11741390 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 11742965 11743009 trf 5 8.8 5 87 9 63 0 0 15 84 0.63 TTTTG chr1 11743782 11743809 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 11746133 11746211 trf 2 39.5 2 77 2 77 48 6 44 0 1.28 AG chr1 11746143 11746231 trf 10 9.2 10 78 9 76 51 10 38 0 1.36 GAGAGACAGA chr1 11746146 11746239 trf 6 15.2 6 76 12 73 51 11 36 0 1.39 AGAGAC chr1 11746160 11746263 trf 10 9.7 10 76 12 71 48 15 34 0 1.52 AGACAGAGAC chr1 11747583 11747618 trf 3 11.7 3 100 0 70 34 0 65 0 0.93 GAG chr1 11750198 11750237 trf 1 39.0 1 100 0 78 100 0 0 0 0.00 A chr1 11753051 11753107 trf 3 18.7 3 100 0 112 66 0 33 0 0.92 AGA chr1 11753105 11753332 trf 6 38.0 6 87 4 289 30 0 69 0 0.89 AGGAGG chr1 11760200 11760250 trf 4 12.5 4 95 0 91 26 2 24 48 1.62 ATGT chr1 11760855 11760933 trf 6 13.3 6 84 12 58 30 0 69 0 0.89 AGGGAG chr1 11760907 11760933 trf 5 5.2 5 100 0 52 38 0 61 0 0.96 GGAGA chr1 11763039 11763086 trf 11 4.5 11 76 17 55 4 87 8 0 0.67 CCCCCGCCCCC chr1 11764052 11764121 trf 5 14.2 5 95 3 115 0 1 20 78 0.83 TGTTT chr1 11766069 11766139 trf 2 36.0 2 86 11 101 50 1 48 0 1.09 GA chr1 11767786 11767838 trf 2 26.0 2 96 0 95 0 0 48 51 1.00 TG chr1 11767837 11767913 trf 2 38.0 2 97 0 143 48 0 51 0 1.00 GA chr1 11769052 11769100 trf 2 24.0 2 91 0 78 52 45 2 0 1.12 AC chr1 11789143 11789207 trf 4 16.5 4 93 6 114 25 26 0 48 1.51 CTAT chr1 11791269 11791332 trf 2 32.0 2 93 3 110 0 49 1 49 1.10 CT chr1 11794361 11794403 trf 2 21.5 2 95 4 77 0 0 50 50 1.00 GT chr1 11794408 11794453 trf 2 22.5 2 100 0 90 48 0 51 0 1.00 GA chr1 11797922 11797978 trf 3 18.3 3 96 3 103 32 0 0 67 0.91 TAT chr1 11803850 11803959 trf 3 36.3 3 96 0 200 65 0 34 0 0.93 AGA chr1 11818734 11818760 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 11821864 11821921 trf 5 11.6 5 83 5 55 0 1 26 71 0.95 TTTGT chr1 11826006 11826077 trf 11 7.4 10 70 23 55 39 0 1 59 1.06 TTTTAATTAA chr1 11829948 11829995 trf 2 23.5 2 91 0 76 48 46 2 2 1.25 AC chr1 11829994 11830039 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 11840850 11840875 trf 12 2.1 12 100 0 50 8 0 16 76 1.02 TGTTTGTTTATT chr1 11844837 11844888 trf 2 25.5 2 95 0 93 49 0 50 0 1.00 AG chr1 11847619 11847645 trf 4 6.5 4 100 0 52 73 0 0 26 0.84 ATAA chr1 11848119 11848152 trf 3 11.0 3 100 0 66 33 0 0 66 0.92 TTA chr1 11848149 11848179 trf 4 7.5 4 100 0 60 23 23 0 53 1.46 TTAC chr1 11864947 11864998 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 11864997 11865028 trf 2 15.5 2 93 0 53 3 0 45 51 1.17 TG chr1 11880908 11880975 trf 2 33.5 2 87 0 98 0 1 43 55 1.09 TG chr1 11883288 11883318 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 11885898 11885943 trf 2 22.5 2 86 0 63 44 0 6 48 1.29 AT chr1 11886738 11886786 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 11903486 11903511 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 11905501 11905588 trf 2 43.5 2 95 0 156 2 0 48 49 1.13 GT chr1 11905587 11905621 trf 2 17.0 2 93 0 59 47 0 52 0 1.00 GA chr1 11910016 11910054 trf 6 6.3 6 90 0 58 0 0 21 78 0.74 TTGTTT chr1 11916567 11916618 trf 4 12.8 4 100 0 102 50 0 23 25 1.49 ATAG chr1 11917652 11917964 trf 3 103.7 3 82 6 148 47 0 52 0 1.00 AGG chr1 11917904 11918082 trf 9 20.4 9 86 4 206 60 0 39 0 0.97 AGAAGAAGA chr1 11917904 11918082 trf 6 30.7 6 86 6 206 60 0 39 0 0.97 AGAAGA chr1 11917968 11918082 trf 3 39.0 3 92 5 198 67 0 32 0 0.91 GAA chr1 11922623 11922656 trf 3 11.3 3 87 6 50 69 27 3 0 1.03 AAC chr1 11927011 11927066 trf 2 27.5 2 100 0 110 49 0 0 50 1.00 TA chr1 11927367 11927442 trf 5 14.8 5 84 6 98 1 1 20 77 0.92 TTTTG chr1 11929942 11929976 trf 4 8.5 4 100 0 68 76 0 0 23 0.79 AAAT chr1 11932195 11932242 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 11940576 11940626 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 11941005 11941178 trf 5 34.6 5 98 0 238 0 0 32 67 0.91 TTTGG chr1 11943247 11943310 trf 4 15.8 4 96 0 117 0 23 0 76 0.79 CTTT chr1 11949916 11949942 trf 12 2.2 12 100 0 52 0 19 0 80 0.71 TCTTTTTTCTTT chr1 11954276 11954478 trf 5 41.0 5 93 2 259 74 1 23 0 0.90 AAAAG chr1 11956439 11956472 trf 2 16.5 2 100 0 66 0 51 0 48 1.00 CT chr1 11956489 11956548 trf 6 10.5 6 77 14 63 0 66 0 33 0.92 CTCCCT chr1 11958329 11958455 trf 10 12.4 10 81 6 56 0 61 2 35 1.09 CCTCCCTCTC chr1 11958330 11958389 trf 2 29.5 2 100 0 118 0 50 0 49 1.00 CT chr1 11958405 11958463 trf 6 10.5 6 78 14 63 0 65 0 34 0.93 CTCCCT chr1 11959676 11959750 trf 4 18.5 4 100 0 148 75 0 24 0 0.80 AAGA chr1 11960117 11960162 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 11960625 11960672 trf 2 23.5 2 100 0 94 51 0 0 48 1.00 AT chr1 11965315 11965369 trf 8 7.2 8 74 16 53 38 22 35 3 1.72 GCGCAAGA chr1 11965338 11965393 trf 6 8.8 6 80 7 65 45 20 32 1 1.61 AGAGCA chr1 11966814 11966966 trf 6 25.7 6 86 12 217 50 15 17 17 1.79 AGATAC chr1 11968791 11968822 trf 2 16.0 2 93 6 55 0 0 51 48 1.00 TG chr1 11976530 11976726 trf 8 24.5 8 77 10 159 47 8 41 2 1.48 GAGAGAGA chr1 11978284 11978332 trf 2 24.5 2 95 4 89 0 47 0 52 1.00 TC chr1 11978331 11978390 trf 2 29.5 2 96 0 109 0 0 47 52 1.00 TG chr1 11994504 11994538 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 11997041 11997085 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 12005997 12006129 trf 8 16.9 8 85 3 144 52 6 40 0 1.34 ACAGAGAG chr1 12006001 12006107 trf 6 17.7 6 88 0 149 50 5 43 0 1.25 GAGAGA chr1 12006004 12006101 trf 10 10.5 10 90 8 111 50 6 43 0 1.27 AGAGAGAGAC chr1 12007619 12007666 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 12008484 12008519 trf 2 17.5 2 93 0 61 51 45 0 2 1.16 AC chr1 12008618 12008802 trf 6 30.8 6 98 0 307 0 63 0 36 0.95 CTCTCC chr1 12009742 12009851 trf 6 18.8 6 77 7 73 0 37 11 50 1.44 TCTGTC chr1 12009748 12009851 trf 12 8.4 12 81 4 116 0 38 10 49 1.44 TCTGTCTCTCTC chr1 12009752 12009845 trf 8 11.6 8 83 8 91 1 39 9 49 1.43 TCTCTGTC chr1 12009768 12009849 trf 4 20.2 4 92 0 108 0 41 7 50 1.30 TCTC chr1 12010221 12010290 trf 8 8.9 8 77 17 65 50 13 34 1 1.50 AGAGAGAC chr1 12010233 12010291 trf 10 6.2 10 84 15 63 50 13 36 0 1.42 AGACAGACAG chr1 12012832 12012892 trf 2 30.0 2 93 0 102 50 46 0 3 1.18 CA chr1 12016576 12016618 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 12017912 12017948 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 12017979 12018060 trf 4 20.5 4 88 7 121 72 1 25 0 0.92 GAAA chr1 12018107 12018176 trf 4 17.5 4 80 8 52 63 1 33 1 1.12 GAAA chr1 12018122 12018208 trf 12 7.2 12 84 6 61 59 1 39 0 1.05 AGAAAGAAAGAG chr1 12018173 12018208 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 12018209 12018285 trf 4 19.2 4 93 2 118 47 0 52 0 1.00 GGAA chr1 12020193 12020232 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 12021293 12021349 trf 4 14.0 4 96 0 103 51 0 48 0 1.00 AAGG chr1 12021776 12021827 trf 2 25.5 2 95 0 93 0 1 50 47 1.12 GT chr1 12032591 12032647 trf 12 4.7 12 81 14 62 51 10 37 0 1.37 GAGAGAGAGACA chr1 12032602 12032635 trf 6 5.5 6 100 0 66 51 15 33 0 1.43 AGACAG chr1 12033571 12033682 trf 4 28.0 4 88 1 116 0 58 0 41 0.98 TCTC chr1 12035707 12035748 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 12035747 12035800 trf 2 26.5 2 82 0 61 52 41 1 3 1.30 CA chr1 12035846 12035905 trf 4 14.8 4 100 0 118 74 0 25 0 0.82 AAGA chr1 12038338 12038465 trf 2 67.5 2 66 17 58 3 44 3 49 1.34 TC chr1 12041541 12041613 trf 5 14.4 5 100 0 144 0 59 0 40 0.97 TCCTC chr1 12049657 12049693 trf 4 9.2 4 93 6 65 0 0 25 75 0.81 GTTT chr1 12051513 12051544 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 12053051 12053090 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 12055129 12055166 trf 12 2.8 14 84 16 60 37 16 13 32 1.87 CATCAAATTGTTGA chr1 12059846 12059917 trf 3 23.7 3 95 0 124 33 0 64 1 1.02 GGA chr1 12061958 12062030 trf 4 18.2 4 94 2 128 25 26 0 48 1.51 TATC chr1 12064892 12064918 trf 5 5.2 5 100 0 52 80 19 0 0 0.71 AAAAC chr1 12065063 12065101 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 12065717 12065766 trf 5 9.8 5 80 8 55 0 2 16 81 0.78 TTTTG chr1 12065941 12066205 trf 5 53.0 5 95 2 334 0 47 0 52 1.00 TCTCT chr1 12066309 12066340 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 12067995 12068052 trf 4 14.2 4 92 0 96 47 22 1 28 1.61 TACA chr1 12075214 12075253 trf 2 19.5 2 87 10 53 46 0 5 48 1.24 AT chr1 12082397 12082438 trf 2 21.5 2 80 9 50 46 2 2 48 1.28 TA chr1 12083961 12084008 trf 4 11.8 4 100 0 94 51 0 23 25 1.49 ATAG chr1 12086613 12086651 trf 1 38.0 1 100 0 76 0 0 0 100 0.00 T chr1 12087857 12087905 trf 4 12.0 4 100 0 96 50 25 0 25 1.50 ACAT chr1 12088652 12088679 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 12100457 12100486 trf 10 2.7 11 94 5 51 82 17 0 0 0.66 AAAACAAAACA chr1 12102353 12102382 trf 4 7.2 4 100 0 58 75 0 0 24 0.80 ATAA chr1 12103725 12103766 trf 12 3.4 12 81 18 50 0 0 21 78 0.76 TTTTTTGGTTTG chr1 12111393 12111451 trf 4 15.0 4 85 7 84 51 1 24 22 1.57 TAGA chr1 12114147 12114235 trf 3 29.7 3 97 2 169 0 32 0 67 0.91 TCT chr1 12120808 12120953 trf 5 28.6 5 93 3 193 0 20 0 78 0.79 TTTTC chr1 12123980 12124023 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 12125852 12125893 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 12128676 12128705 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 12129679 12129714 trf 7 5.1 7 89 6 54 11 28 0 60 1.32 TTCCTAT chr1 12132582 12132617 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 12132890 12132922 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 12134313 12134348 trf 2 17.5 2 100 0 70 0 48 0 51 1.00 TC chr1 12134347 12134392 trf 2 23.0 2 95 4 83 0 0 51 48 1.00 TG chr1 12136510 12136546 trf 6 6.3 6 87 12 58 0 50 0 50 1.00 TTTCCC chr1 12136510 12136546 trf 11 3.2 11 96 4 63 0 50 0 50 1.00 TTTCCCTTCCC chr1 12136511 12136557 trf 5 9.0 5 82 17 51 0 58 0 41 0.98 TTCCC chr1 12136837 12136934 trf 4 24.8 4 91 4 144 0 26 0 73 0.84 CTTT chr1 12137620 12137651 trf 12 2.6 12 94 0 53 29 0 70 0 0.87 GAGAGGGGGAGG chr1 12141379 12141423 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 12145558 12145616 trf 2 29.0 2 85 0 80 3 3 43 50 1.36 GT chr1 12157361 12157388 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 12162561 12162618 trf 2 28.5 2 96 0 105 1 0 49 49 1.11 GT chr1 12162665 12162770 trf 5 23.2 4 97 2 102 0 55 0 44 0.99 CCTT chr1 12162767 12162834 trf 4 16.8 4 93 0 116 0 25 0 74 0.82 TTCT chr1 12176168 12176383 trf 4 53.2 4 90 3 243 0 34 0 65 0.93 CTTT chr1 12181550 12181576 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 CT chr1 12181575 12181632 trf 2 28.5 2 92 0 96 0 3 47 49 1.18 TG chr1 12191371 12191427 trf 4 13.2 4 80 19 53 1 21 0 76 0.87 TTTC chr1 12198386 12198905 trf 8 63.6 8 90 7 769 0 60 0 39 0.99 CTCTCTCC chr1 12199765 12199810 trf 11 4.3 11 76 18 51 82 17 0 0 0.68 AAACAAAAACA chr1 12199981 12200011 trf 4 7.8 4 92 7 53 46 0 0 53 1.00 ATTA chr1 12205140 12205182 trf 4 11.0 4 85 10 52 47 4 26 21 1.70 TAGA chr1 12206102 12206143 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 12223466 12223499 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 12224362 12224423 trf 2 30.5 2 100 0 122 0 0 49 50 1.00 TG chr1 12230548 12230653 trf 4 26.2 4 90 3 167 0 25 0 73 0.90 TCTT chr1 12234956 12235002 trf 1 46.0 1 100 0 92 100 0 0 0 0.00 A chr1 12237158 12237196 trf 5 7.2 5 96 3 58 76 23 0 0 0.79 AAACA chr1 12237159 12237199 trf 3 14.7 3 80 19 52 75 25 0 0 0.81 AAC chr1 12238263 12238410 trf 6 24.5 6 100 0 294 0 50 16 33 1.45 CCTCTG chr1 12240033 12240084 trf 2 25.5 2 95 0 93 49 49 1 0 1.12 AC chr1 12240647 12240746 trf 3 33.0 3 89 0 153 32 0 67 0 0.91 GAG chr1 12241376 12241436 trf 9 6.7 9 84 9 70 1 0 13 85 0.69 TTGTTTTTT chr1 12241398 12241431 trf 1 33.0 1 93 0 57 0 0 3 96 0.20 T chr1 12257285 12257331 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 12257330 12257379 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 12258146 12258187 trf 2 20.5 2 94 0 73 48 48 2 0 1.14 AC chr1 12259997 12260023 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 12260487 12260538 trf 2 25.5 2 100 0 102 0 0 50 49 1.00 GT chr1 12262636 12262707 trf 6 11.8 6 100 0 142 83 0 0 16 0.66 TAAAAA chr1 12272293 12272323 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 12275731 12275794 trf 6 10.5 6 89 0 99 30 0 69 0 0.88 AGAGGG chr1 12279952 12279994 trf 5 8.4 5 94 0 75 21 0 40 38 1.53 TGGAT chr1 12282145 12282193 trf 2 24.0 2 91 0 78 52 45 0 2 1.12 AC chr1 12284844 12284979 trf 5 25.8 5 93 3 99 47 0 48 3 1.19 AAGGG chr1 12284895 12284982 trf 5 17.4 5 98 0 129 55 0 44 0 0.99 AAGGA chr1 12304750 12304792 trf 5 8.8 5 97 2 70 0 14 0 85 0.59 TTTTC chr1 12308559 12308585 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 12310926 12310985 trf 2 29.5 2 96 0 109 1 0 47 50 1.11 TG chr1 12312437 12312471 trf 2 17.0 2 87 0 50 47 2 50 0 1.16 GA chr1 12312491 12312631 trf 4 35.8 4 92 4 241 48 0 25 26 1.51 GATA chr1 12313032 12313300 trf 11 23.3 12 69 16 124 48 1 25 23 1.61 AGATAGATAGAT chr1 12313032 12313300 trf 4 70.0 4 69 17 124 48 1 25 23 1.61 AGAT chr1 12315080 12315123 trf 5 8.6 5 100 0 86 81 0 0 18 0.69 AAATA chr1 12315742 12315794 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 12316146 12316187 trf 6 6.8 6 88 0 55 2 12 46 39 1.54 GTGTGC chr1 12316536 12316609 trf 2 37.0 2 97 2 139 49 0 50 0 1.00 AG chr1 12316660 12316706 trf 6 7.3 6 82 7 56 6 2 13 78 1.04 TTTTGT chr1 12320894 12320925 trf 10 3.1 10 95 0 53 48 45 0 6 1.28 CACACATACA chr1 12337588 12337644 trf 3 19.3 3 89 7 89 0 1 30 67 1.01 TGT chr1 12339119 12339145 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 12340860 12340887 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 12344056 12344188 trf 4 32.8 4 96 1 174 68 0 31 0 0.90 AAAG chr1 12347830 12347876 trf 4 11.5 4 85 0 65 2 2 23 71 1.08 TTGT chr1 12365044 12365093 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 12365977 12366174 trf 5 39.6 5 96 1 234 71 0 28 0 0.86 AAAAG chr1 12370499 12370525 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 12385231 12385270 trf 5 7.8 5 100 0 78 0 0 20 79 0.73 TTTGT chr1 12387142 12387199 trf 2 28.5 2 100 0 114 49 0 0 50 1.00 TA chr1 12388140 12388189 trf 4 12.8 4 82 8 66 2 26 0 71 0.97 CTTT chr1 12388147 12388194 trf 12 4.0 12 86 5 51 2 31 0 65 1.04 CTTTCTTTCTTC chr1 12389017 12389092 trf 4 18.8 4 91 0 105 78 0 21 0 0.75 AAGA chr1 12397629 12397658 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 12400952 12401007 trf 2 27.5 2 79 0 56 3 49 7 40 1.48 CT chr1 12400954 12401007 trf 8 6.6 8 88 0 70 3 49 7 39 1.49 CTCTCTCG chr1 12407927 12407959 trf 11 2.9 11 90 0 55 37 25 0 37 1.56 CTAAATACTCT chr1 12417352 12417451 trf 4 25.8 4 83 8 134 47 2 23 27 1.62 TAGA chr1 12420250 12420276 trf 4 6.5 4 100 0 52 26 23 0 50 1.50 ATTC chr1 12422708 12422739 trf 8 3.9 8 91 0 53 9 22 38 29 1.86 TCCTGGGA chr1 12422801 12422832 trf 8 3.9 8 91 0 53 12 25 38 22 1.90 TCCTGGGA chr1 12429919 12430044 trf 4 31.0 4 91 1 205 52 0 47 0 1.06 GAAG chr1 12429995 12430113 trf 4 29.5 4 87 3 112 67 0 30 0 1.02 GAAA chr1 12430630 12430689 trf 4 14.8 4 100 0 118 76 0 23 0 0.79 AAAG chr1 12431868 12431910 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 12432490 12432524 trf 4 8.5 4 93 0 50 0 67 5 26 1.13 CTCC chr1 12434938 12435051 trf 8 14.1 8 96 0 154 17 30 0 51 1.52 TCTCTATC chr1 12434948 12435054 trf 8 13.2 8 98 0 158 18 31 0 50 1.48 TCTATCTA chr1 12435071 12435098 trf 12 2.2 12 100 0 54 7 33 14 44 1.73 TCTGTCTGTCCA chr1 12435095 12435126 trf 2 15.5 2 93 0 53 0 45 0 54 0.99 TC chr1 12435125 12435182 trf 2 28.5 2 96 0 105 1 0 49 49 1.11 TG chr1 12437131 12437168 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 12437167 12437206 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 12437203 12437255 trf 4 13.2 4 95 4 97 50 0 25 25 1.50 AGAT chr1 12439725 12439755 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 12451074 12451141 trf 8 8.8 8 74 12 61 82 16 1 0 0.75 AAAAAAAC chr1 12454403 12454435 trf 4 8.0 4 92 0 55 71 0 28 0 0.86 AAAG chr1 12454404 12454492 trf 12 7.2 12 89 5 97 59 0 40 0 0.98 AAGAAAGGAAGG chr1 12454404 12454494 trf 8 11.1 8 92 3 92 58 0 41 0 0.98 AAGAAAGG chr1 12454424 12454494 trf 4 17.2 4 91 2 113 54 0 45 0 0.99 AAGG chr1 12457603 12457639 trf 6 5.8 6 90 3 54 0 69 0 30 0.89 CTCTCC chr1 12459289 12459326 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 12469000 12469052 trf 11 4.5 11 92 7 86 1 0 19 78 0.84 TTGTTTGTTTT chr1 12469000 12469052 trf 4 13.5 4 86 13 74 1 0 19 78 0.84 TTGT chr1 12472414 12472858 trf 4 107.8 4 69 5 240 9 41 18 30 1.83 TGCC chr1 12473007 12473068 trf 5 12.8 5 77 14 58 1 0 19 78 0.83 TTTTG chr1 12473362 12473406 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 12473405 12473437 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 12476128 12476335 trf 8 24.9 8 83 13 224 50 15 34 0 1.44 AGAGAGAC chr1 12476132 12476325 trf 12 16.9 12 81 8 154 50 16 33 0 1.45 AGACAGACAGAC chr1 12478410 12478542 trf 2 67.0 2 82 3 151 50 41 5 3 1.40 AC chr1 12479847 12479884 trf 2 18.5 2 88 0 56 56 43 0 0 0.99 AC chr1 12486984 12487015 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 12487008 12487048 trf 12 3.1 12 80 19 53 57 10 10 22 1.61 ATATATACAAAG chr1 12489675 12489715 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 12494098 12494146 trf 5 9.8 5 90 4 80 0 0 18 81 0.70 TTTTG chr1 12499718 12499760 trf 10 4.7 9 91 5 52 7 2 45 45 1.44 GTGTGTGAT chr1 12504361 12504420 trf 5 11.8 5 82 7 75 44 20 33 1 1.62 GACAG chr1 12505227 12505265 trf 12 3.1 12 88 3 58 36 0 18 44 1.50 TGATATATGATA chr1 12505274 12505371 trf 5 18.6 5 89 8 149 41 0 36 22 1.54 ATAGG chr1 12505416 12505460 trf 5 8.4 5 90 9 70 40 0 20 38 1.53 TATGA chr1 12505732 12505791 trf 2 30.0 2 89 3 93 0 0 45 54 0.99 TG chr1 12506492 12506996 trf 10 47.4 10 64 15 104 17 5 31 45 1.71 ATGTGTGTGT chr1 12506648 12506868 trf 8 28.4 8 66 15 61 19 4 30 46 1.69 TGTATATG chr1 12506789 12506880 trf 12 7.2 12 71 9 74 16 3 31 48 1.62 TGTGTGTATATG chr1 12508948 12508989 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 12511223 12511291 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 12516564 12516601 trf 8 4.8 8 90 3 58 89 10 0 0 0.49 AAAAAACA chr1 12520054 12520082 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 12522164 12522317 trf 4 38.2 4 94 0 270 0 49 0 50 1.00 CTTC chr1 12522598 12522637 trf 4 9.8 4 100 0 78 0 0 23 76 0.78 TTTG chr1 12522692 12522875 trf 5 36.6 5 98 0 222 51 0 48 0 1.00 AAAGG chr1 12527425 12527452 trf 3 9.0 3 100 0 54 66 0 0 33 0.92 AAT chr1 12532756 12532805 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 12546716 12546763 trf 2 23.5 2 95 0 85 2 0 46 51 1.13 TG chr1 12547223 12547346 trf 4 31.5 4 90 4 126 41 0 58 0 0.98 AGAG chr1 12548760 12548843 trf 2 41.5 2 93 0 139 1 1 46 50 1.16 TG chr1 12551549 12551626 trf 5 15.6 5 97 2 147 0 0 19 80 0.71 TTTGT chr1 12553961 12553988 trf 3 9.0 3 100 0 54 0 0 33 66 0.92 GTT chr1 12570751 12570960 trf 8 26.4 8 67 13 103 46 16 4 33 1.66 ACATATAT chr1 12581401 12581486 trf 4 21.5 4 77 9 59 1 1 23 74 0.96 TTGT chr1 12581436 12581502 trf 1 66.0 1 75 0 51 0 0 13 86 0.57 T chr1 12581437 12581503 trf 7 10.0 7 77 12 77 0 0 15 84 0.61 TTTTTTG chr1 12586238 12586290 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 12594617 12594646 trf 3 9.7 3 100 0 58 31 0 0 68 0.89 TTA chr1 12594645 12594677 trf 3 10.7 3 100 0 64 0 0 31 68 0.90 TTG chr1 12601175 12601244 trf 12 5.2 12 71 19 57 20 7 2 69 1.25 TTTATATTATCT chr1 12602603 12602815 trf 5 42.2 5 86 2 174 47 3 49 0 1.18 GGAGA chr1 12603048 12603096 trf 2 24.0 2 95 0 87 2 0 47 50 1.12 GT chr1 12605282 12605308 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 12606033 12606094 trf 4 14.8 4 73 13 52 47 6 21 24 1.74 TAGA chr1 12619864 12619901 trf 4 9.2 4 100 0 74 24 24 0 51 1.49 TATC chr1 12633710 12633746 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 12639998 12640039 trf 4 10.2 4 83 0 55 65 0 34 0 0.93 GAAA chr1 12640036 12640164 trf 4 32.0 4 96 0 139 39 0 60 0 0.97 AAGG chr1 12640164 12640244 trf 4 20.2 4 93 2 135 71 1 27 0 0.94 GAAA chr1 12642294 12642336 trf 4 11.0 4 90 10 70 0 0 23 76 0.79 TTTG chr1 12642602 12642656 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 12642858 12642906 trf 4 12.0 4 100 0 96 50 0 25 25 1.50 TAGA chr1 12642859 12642923 trf 8 8.2 8 89 6 60 48 0 31 20 1.50 AGATAGAG chr1 12642899 12642934 trf 12 2.6 14 91 8 56 45 0 42 11 1.40 AGATAGAGATGGAG chr1 12644774 12644840 trf 5 13.2 5 100 0 132 39 0 39 21 1.53 TGGAA chr1 12648035 12648103 trf 8 7.9 8 84 12 73 0 0 14 85 0.60 TTTTTTGT chr1 12648036 12648103 trf 9 7.7 9 82 15 54 0 0 14 85 0.61 TTTTTGTTG chr1 12648056 12648102 trf 1 46.0 1 86 0 56 0 0 8 91 0.43 T chr1 12651788 12651819 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 12651825 12651874 trf 2 24.5 2 100 0 98 51 0 0 48 1.00 AT chr1 12652199 12652388 trf 4 43.8 4 94 4 182 74 0 25 0 0.83 AAAG chr1 12652243 12652396 trf 5 33.0 5 94 4 181 77 0 22 0 0.78 AAAGA chr1 12653456 12653491 trf 8 4.4 8 96 0 61 0 40 14 45 1.45 CTCTCTTG chr1 12659668 12659714 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 TA chr1 12662102 12662148 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 12672728 12672788 trf 2 30.0 2 96 0 111 0 1 50 48 1.11 GT chr1 12681682 12681763 trf 5 16.0 5 98 1 153 0 39 1 59 1.05 TCTCT chr1 12684450 12684483 trf 10 3.3 10 100 0 66 0 39 9 51 1.34 TCTGTCTCTC chr1 12684485 12684523 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 12686588 12686615 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 12687530 12687577 trf 4 11.8 4 100 0 94 0 74 0 25 0.82 TCCC chr1 12687628 12687692 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 CT chr1 12689189 12689254 trf 5 13.0 5 83 0 85 0 72 0 27 0.85 CCCCT chr1 12690098 12690175 trf 8 9.6 8 100 0 154 24 12 62 0 1.31 GCAGGGAG chr1 12691283 12691336 trf 10 5.3 10 100 0 106 9 81 0 9 0.89 CCCTCCCCCA chr1 12692709 12692878 trf 10 15.9 10 93 6 216 0 56 0 43 0.99 TCTCCTCTCC chr1 12700505 12700543 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 12703111 12703165 trf 2 27.0 2 96 0 99 50 48 0 1 1.11 CA chr1 12704980 12705034 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 12705317 12705354 trf 4 9.0 4 94 5 65 0 0 24 75 0.80 GTTT chr1 12705604 12705655 trf 6 8.5 6 88 0 75 5 0 58 35 1.22 GTTGGG chr1 12706082 12706362 trf 2 144.0 2 89 5 432 2 0 48 48 1.16 TG chr1 12707166 12707219 trf 5 10.8 5 95 4 99 0 0 18 81 0.70 TTTTG chr1 12708389 12708433 trf 4 11.0 4 95 0 79 25 2 0 72 0.96 TATT chr1 12708895 12708957 trf 2 31.0 2 96 0 115 48 0 51 0 1.00 AG chr1 12710460 12710517 trf 2 28.5 2 96 0 105 50 47 0 1 1.11 AC chr1 12711133 12711180 trf 12 4.1 12 83 10 71 0 61 0 38 0.96 TTCTCCTCCTCC chr1 12711135 12711182 trf 3 15.3 3 82 4 58 0 65 0 34 0.93 CTC chr1 12711180 12711213 trf 3 11.0 3 100 0 66 33 66 0 0 0.92 CCA chr1 12712942 12712991 trf 4 12.2 4 100 0 98 51 24 0 24 1.49 ATAC chr1 12717643 12717752 trf 4 27.8 4 91 3 132 44 1 53 0 1.11 AGAG chr1 12717749 12717874 trf 4 31.2 4 96 0 232 73 0 26 0 0.83 AGAA chr1 12719803 12719833 trf 2 15.0 2 92 0 51 3 50 0 46 1.18 CT chr1 12719832 12719860 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 12719865 12719909 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 12722154 12722211 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 12722357 12722406 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 12723994 12724085 trf 12 7.8 12 72 20 77 0 1 19 79 0.80 TTTTGTTTTTTG chr1 12723994 12724094 trf 5 19.8 5 75 17 75 0 1 19 80 0.78 TTTTG chr1 12730826 12730861 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 12732022 12732047 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 12734374 12734421 trf 2 23.0 2 95 4 85 0 48 2 48 1.13 CT chr1 12740908 12740940 trf 2 16.0 2 93 0 55 46 0 53 0 1.00 GA chr1 12741354 12741394 trf 2 20.5 2 87 5 55 50 2 2 45 1.28 AT chr1 12742279 12742315 trf 4 9.2 4 93 6 65 72 0 0 27 0.85 TAAA chr1 12748438 12748601 trf 12 13.2 12 81 12 143 49 17 32 0 1.47 AGAGACAGACAG chr1 12748438 12748513 trf 6 12.5 6 92 0 69 50 12 37 0 1.39 AGAGAG chr1 12748468 12748599 trf 4 34.8 4 79 11 134 49 20 29 0 1.49 AGAC chr1 12758324 12758397 trf 5 14.8 5 87 8 105 79 19 1 0 0.81 AAAAC chr1 12759312 12759633 trf 10 30.5 10 90 4 198 42 0 56 0 1.04 GAGAGGAGAG chr1 12759324 12759490 trf 12 12.5 15 73 23 151 32 1 66 0 1.00 AGGAGGAGGAGGAGG chr1 12759353 12759490 trf 5 26.6 5 92 2 105 32 0 67 0 0.91 GAGGG chr1 12759437 12759634 trf 8 22.4 10 74 24 196 50 0 49 0 1.00 GAGAGAGAGA chr1 12761674 12761709 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 12766149 12766184 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 12767054 12767087 trf 2 17.0 2 93 6 59 48 0 51 0 1.00 GA chr1 12772082 12772135 trf 1 53.0 1 92 0 88 0 3 0 96 0.23 T chr1 12774234 12774569 trf 3 111.3 3 95 0 328 55 4 40 0 1.22 AGA chr1 12779777 12779802 trf 11 2.3 11 100 0 50 32 16 0 52 1.44 TTTCCATAATA chr1 12780088 12780160 trf 4 18.5 4 81 5 67 1 6 40 51 1.37 GTGT chr1 12780107 12780164 trf 8 7.4 8 86 7 82 0 10 38 50 1.37 TGTGTGTC chr1 12784721 12784751 trf 3 10.0 3 92 0 51 0 3 30 66 1.07 TTG chr1 12792118 12792157 trf 8 4.9 8 100 0 78 23 25 38 12 1.90 TGCAGGCA chr1 12793010 12793054 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 TATT chr1 12794616 12794829 trf 5 44.8 5 98 0 196 0 42 0 57 0.98 TTCTC chr1 12794781 12794831 trf 4 12.5 4 100 0 100 0 24 0 76 0.80 TTCT chr1 12803457 12803518 trf 4 15.2 4 100 0 122 0 49 0 50 1.00 TTCC chr1 12803741 12803836 trf 1 95.0 1 74 0 82 0 1 11 87 0.60 T chr1 12804329 12804387 trf 4 14.5 4 96 0 107 48 0 24 27 1.51 ATAG chr1 12804341 12804416 trf 8 9.4 8 86 0 60 46 8 20 25 1.77 ATAGATAC chr1 12804398 12804428 trf 12 2.5 12 100 0 60 43 16 13 26 1.85 TACATACATGGA chr1 12806777 12806822 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 12812828 12812860 trf 4 8.0 4 92 0 55 71 0 3 25 1.00 TAAA chr1 12813570 12813602 trf 3 10.7 3 93 0 55 71 28 0 0 0.86 AAC chr1 12816557 12816613 trf 2 28.0 2 96 0 103 50 48 0 1 1.11 AC chr1 12819880 12819918 trf 2 19.0 2 94 0 67 50 47 2 0 1.15 CA chr1 12826641 12826670 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 12827310 12827347 trf 4 9.2 4 93 0 65 78 21 0 0 0.75 AAAC chr1 12832574 12832602 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 12832947 12833025 trf 4 19.8 4 94 2 140 50 0 50 0 1.00 AGGA chr1 12834085 12834111 trf 4 6.5 4 100 0 52 0 0 26 73 0.84 TGTT chr1 12840965 12841376 trf 4 103.2 4 66 6 136 12 1 42 43 1.52 TGTG chr1 12844424 12844502 trf 2 39.0 2 92 0 129 53 0 46 0 1.00 GA chr1 12845081 12845142 trf 2 30.5 2 93 0 104 1 1 47 49 1.21 TG chr1 12846735 12846786 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 12850468 12850523 trf 2 27.5 2 100 0 110 0 49 0 50 1.00 TC chr1 12853635 12853694 trf 4 15.2 4 80 16 63 79 20 0 0 0.73 CAAA chr1 12854270 12854309 trf 5 7.8 5 100 0 78 0 0 17 82 0.68 TTTTG chr1 12856600 12856665 trf 2 32.5 2 93 0 112 52 0 47 0 1.00 GA chr1 12863668 12863701 trf 5 7.0 5 86 13 52 0 18 0 81 0.68 CTTTT chr1 12867875 12867948 trf 2 36.5 2 80 5 85 49 43 0 6 1.29 AC chr1 12873199 12873234 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 12875325 12875385 trf 4 13.8 4 86 10 57 0 0 28 71 0.86 TTTG chr1 12878494 12878602 trf 5 22.4 5 94 3 154 0 23 0 76 0.78 TTTCT chr1 12881454 12881496 trf 2 21.0 2 95 0 75 47 0 52 0 1.00 GA chr1 12883969 12884004 trf 5 7.0 5 93 0 61 77 0 0 22 0.78 TAAAA chr1 12891161 12891213 trf 4 13.0 4 91 0 86 26 46 0 26 1.53 CCAT chr1 12891901 12892116 trf 5 43.2 5 98 0 297 53 0 46 0 1.00 AAGGA chr1 12895289 12895331 trf 3 14.0 3 100 0 84 33 0 0 66 0.92 TTA chr1 12895329 12895370 trf 3 13.7 3 100 0 82 34 31 0 34 1.58 TAC chr1 12912984 12913119 trf 5 27.6 5 72 14 95 0 60 0 38 1.08 CTCCT chr1 12916845 12916915 trf 2 35.5 2 91 2 106 47 2 0 50 1.16 AT chr1 12921887 12921920 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 12921919 12921965 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 12923637 12923667 trf 2 15.0 2 92 0 51 53 0 0 46 1.00 AT chr1 12924039 12924134 trf 4 24.0 4 81 10 106 45 0 27 27 1.54 TAGA chr1 12933470 12933510 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 12935547 12935598 trf 2 25.5 2 95 0 93 47 50 0 1 1.12 CA chr1 12935739 12935766 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 12948068 12948123 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 12948768 12948809 trf 2 20.5 2 94 0 73 0 0 46 53 1.00 TG chr1 12957787 12957849 trf 3 20.7 3 100 0 124 0 33 0 66 0.92 CTT chr1 12957848 12957893 trf 4 11.2 4 100 0 90 0 0 24 75 0.80 TGTT chr1 12958030 12958129 trf 3 33.3 3 93 2 173 0 31 0 68 0.90 CTT chr1 12958127 12958158 trf 3 10.3 3 92 0 53 0 61 0 38 0.96 TCC chr1 12961747 12961799 trf 2 26.0 2 88 0 77 44 53 1 0 1.11 AC chr1 12963151 12963192 trf 4 10.2 4 100 0 82 75 0 24 0 0.80 AAGA chr1 12963192 12963447 trf 6 50.6 5 93 6 252 39 0 60 0 0.97 GGAAG chr1 12963440 12963482 trf 5 8.6 5 97 2 77 38 0 61 0 0.96 GGAGA chr1 12965482 12965535 trf 12 4.3 12 95 2 88 49 13 37 0 1.42 GAGACAGAGACA chr1 12967308 12967406 trf 2 49.0 2 84 4 126 1 5 46 46 1.31 GT chr1 12970295 12970337 trf 2 20.5 2 95 4 75 47 50 2 0 1.14 CA chr1 12972655 12973012 trf 4 91.8 4 79 9 337 48 6 19 25 1.73 GATA chr1 12974091 12974139 trf 2 24.5 2 95 4 89 50 50 0 0 1.00 AC chr1 12975072 12975110 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 12978004 12978171 trf 12 14.8 12 79 13 108 0 1 30 67 1.02 TTTTGGTTTTTG chr1 12978012 12978216 trf 5 39.6 5 88 7 195 0 0 32 65 1.03 TTTGG chr1 12981972 12982019 trf 2 24.0 2 91 4 78 48 48 2 0 1.13 AC chr1 12983075 12983129 trf 5 10.6 5 97 2 99 0 1 18 79 0.82 TTTTG chr1 12984061 12984218 trf 3 52.3 3 94 0 278 0 64 0 35 0.94 CTC chr1 12986680 12986729 trf 2 24.5 2 100 0 98 48 0 0 51 1.00 TA chr1 12988520 12988587 trf 2 33.5 2 93 0 116 52 1 46 0 1.09 AG chr1 12988630 12988655 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 12991882 12991928 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 12992415 12992457 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 12993967 12994013 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 CT chr1 12997012 12997105 trf 9 10.0 9 69 23 59 2 54 10 32 1.47 TCCTCCTGC chr1 12997172 12997217 trf 3 15.0 3 90 0 72 0 62 2 35 1.08 TCC chr1 12999402 12999451 trf 5 9.8 5 100 0 98 81 0 0 18 0.69 AAAAT chr1 13002713 13002798 trf 2 44.0 2 83 6 113 3 1 44 50 1.26 GT chr1 13007359 13007384 trf 5 5.0 5 100 0 50 20 0 0 80 0.72 ATTTT chr1 13009730 13009852 trf 5 24.0 5 85 3 163 27 0 72 0 0.84 GGAGG chr1 13012486 13012549 trf 5 12.6 5 100 0 126 0 0 19 80 0.70 TTTGT chr1 13014464 13014506 trf 2 21.0 2 90 0 66 45 0 4 50 1.23 AT chr1 13017610 13017640 trf 5 6.0 5 100 0 60 20 0 0 80 0.72 TTTTA chr1 13022260 13022311 trf 2 25.5 2 100 0 102 0 50 0 49 1.00 CT chr1 13023568 13023609 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 13027430 13027489 trf 2 29.5 2 85 0 82 3 45 0 50 1.18 CT chr1 13027488 13027541 trf 12 4.6 12 76 9 65 41 45 0 13 1.43 CACACACACTCA chr1 13030454 13030536 trf 4 20.0 4 91 8 130 0 24 0 75 0.80 TTTC chr1 13031431 13031467 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 13032545 13032697 trf 6 25.8 6 70 11 82 32 0 67 0 0.91 GAGAGG chr1 13038049 13038129 trf 4 20.0 4 97 0 151 51 0 48 0 1.00 GGAA chr1 13041598 13041629 trf 4 7.8 4 92 0 53 51 3 0 45 1.17 TAAT chr1 13041878 13041930 trf 4 13.0 4 100 0 104 75 0 25 0 0.81 AAAG chr1 13042636 13042664 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 13043904 13043941 trf 3 12.3 3 94 0 65 29 70 0 0 0.88 CCA chr1 13044727 13044765 trf 1 38.0 1 89 0 58 0 5 0 94 0.30 T chr1 13046074 13046122 trf 2 24.0 2 91 0 78 2 0 47 50 1.12 GT chr1 13046388 13046705 trf 4 79.2 4 77 0 184 7 8 36 47 1.62 TGTG chr1 13047363 13047395 trf 2 16.5 2 93 6 57 0 0 53 46 1.00 GT chr1 13047394 13047429 trf 2 17.5 2 93 0 61 45 0 54 0 0.99 GA chr1 13051210 13051244 trf 3 11.7 3 93 6 61 0 0 29 70 0.87 TTG chr1 13051855 13051880 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 13052887 13053051 trf 4 41.0 4 92 0 166 0 35 0 64 0.94 TCTT chr1 13052891 13053050 trf 8 19.9 8 96 0 183 0 36 0 63 0.95 TCTTTCTC chr1 13054956 13054993 trf 4 9.2 4 100 0 74 51 24 24 0 1.49 ACAG chr1 13056762 13056831 trf 5 13.8 5 79 14 72 0 0 15 84 0.63 TTTTG chr1 13056776 13056834 trf 1 58.0 1 75 0 53 0 0 12 87 0.53 T chr1 13059962 13060017 trf 6 9.2 6 85 0 65 1 56 5 36 1.33 TCCTCC chr1 13059971 13060017 trf 9 5.1 9 91 0 65 2 56 4 36 1.31 TCCTCGTCC chr1 13062630 13063007 trf 2 188.5 2 71 19 236 9 0 45 44 1.39 GT chr1 13063782 13063812 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 13065154 13065187 trf 2 16.5 2 93 0 57 51 0 48 0 1.00 GA chr1 13069278 13069347 trf 2 34.5 2 100 0 138 0 50 0 49 1.00 CT chr1 13070094 13070165 trf 2 35.5 2 97 0 133 1 0 47 50 1.09 TG chr1 13074438 13074467 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 13075948 13075974 trf 9 2.9 9 100 0 52 23 34 19 23 1.96 ACATTGCCG chr1 13077182 13077234 trf 1 52.0 1 84 0 68 0 7 0 92 0.39 T chr1 13078810 13078835 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 13079099 13079147 trf 12 3.6 13 81 18 55 70 29 0 0 0.87 AAACCAAACAAAC chr1 13079099 13079147 trf 5 10.6 5 88 8 52 70 29 0 0 0.87 AAACC chr1 13082650 13082689 trf 11 3.5 11 82 6 51 79 20 0 0 0.73 AAAACAAAAAC chr1 13083822 13083851 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 13086113 13086200 trf 8 10.8 8 79 7 86 0 33 0 66 0.92 TTTCTTTC chr1 13086197 13086265 trf 4 17.0 4 87 0 100 0 50 2 47 1.16 CTTC chr1 13086872 13086901 trf 2 14.5 2 100 0 58 0 48 0 51 1.00 TC chr1 13090015 13090076 trf 2 30.5 2 100 0 122 0 50 0 49 1.00 CT chr1 13090375 13090404 trf 11 2.6 11 100 0 58 0 0 6 93 0.36 TTTTTTTTTTG chr1 13091395 13091439 trf 1 44.0 1 95 0 70 0 4 0 95 0.27 T chr1 13092247 13092292 trf 2 22.5 2 100 0 90 0 51 0 48 1.00 CT chr1 13093799 13093936 trf 5 29.8 5 94 3 136 0 23 0 76 0.78 TTTTC chr1 13094536 13094571 trf 8 4.4 8 92 0 52 0 8 0 91 0.42 TCTTTTTT chr1 13094538 13094569 trf 1 31.0 1 93 0 53 0 3 0 96 0.21 T chr1 13097188 13097228 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 13099839 13099887 trf 9 5.4 9 77 5 53 18 2 45 33 1.61 GATGATGGT chr1 13099841 13099889 trf 6 8.2 6 76 4 53 16 2 45 35 1.59 TGATGG chr1 13101768 13101794 trf 4 6.5 4 100 0 52 23 0 76 0 0.78 GGAG chr1 13101797 13101840 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 13103321 13103348 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 13110481 13110517 trf 4 9.2 4 93 6 65 75 25 0 0 0.81 CAAA chr1 13121079 13121109 trf 4 7.8 4 92 7 53 76 23 0 0 0.78 CAAA chr1 13121472 13121539 trf 2 33.5 2 80 5 73 46 44 5 2 1.43 AC chr1 13121625 13121670 trf 8 5.8 8 81 5 56 86 2 11 0 0.65 AAAAAAGA chr1 13123405 13123437 trf 4 8.0 4 100 0 64 25 0 0 75 0.81 TTTA chr1 13127766 13127893 trf 2 63.5 2 88 0 182 50 43 4 1 1.32 AC chr1 13129354 13129379 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 13130029 13130222 trf 4 48.2 4 74 0 161 0 61 3 34 1.13 TCCC chr1 13130219 13130292 trf 4 19.0 4 91 8 125 0 47 0 52 1.00 CCTT chr1 13131005 13131041 trf 4 9.0 4 87 0 54 69 0 30 0 0.89 GAAA chr1 13132632 13132667 trf 2 17.5 2 100 0 70 0 48 0 51 1.00 TC chr1 13132685 13132750 trf 4 16.5 4 90 9 107 0 46 0 53 1.00 TTCC chr1 13137808 13137836 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 13144572 13144620 trf 5 9.8 5 93 2 80 81 16 2 0 0.79 AAAAC chr1 13151580 13151623 trf 9 4.9 9 94 5 79 0 44 23 32 1.54 GTGTCCCCT chr1 13157853 13157893 trf 4 10.0 4 94 0 71 22 50 25 2 1.62 GCAC chr1 13158588 13158667 trf 2 42.0 2 74 20 73 2 49 0 48 1.14 TC chr1 13169757 13169817 trf 2 30.0 2 96 0 102 50 3 0 46 1.18 AT chr1 13172356 13172431 trf 5 15.0 5 100 0 150 40 40 0 20 1.52 TCACA chr1 13178222 13178267 trf 5 9.6 5 90 4 60 82 0 0 17 0.68 AAAAT chr1 13206599 13206629 trf 12 2.5 12 88 0 51 23 76 0 0 0.78 ACCCCAACCCCC chr1 13216046 13216079 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 ACAA chr1 13217098 13217125 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 13219757 13219785 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 13230352 13230387 trf 8 4.4 8 86 13 54 88 0 11 0 0.51 AAAAAAGA chr1 13233150 13233194 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 13243911 13243939 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 13255003 13255256 trf 2 126.5 2 88 0 137 15 1 48 35 1.52 GT chr1 13268768 13268814 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 13272961 13273116 trf 2 77.5 2 97 0 292 1 0 48 50 1.09 TG chr1 13280595 13280662 trf 2 34.0 2 83 3 73 46 1 50 1 1.19 GA chr1 13281034 13281064 trf 4 7.8 4 92 7 53 76 23 0 0 0.78 AACA chr1 13282078 13282129 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 13290506 13290535 trf 6 4.8 6 100 0 58 17 82 0 0 0.66 CCACCC chr1 13290688 13290715 trf 3 9.0 3 100 0 54 66 0 0 33 0.92 ATA chr1 13295456 13295489 trf 5 6.6 5 92 0 57 78 18 3 0 0.87 AAAAC chr1 13297423 13297457 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 13298835 13298905 trf 4 17.5 4 90 0 113 28 0 45 25 1.54 TGGA chr1 13300432 13300479 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 13303238 13303288 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 13312433 13312459 trf 3 8.7 3 100 0 52 69 30 0 0 0.89 AAC chr1 13315341 13315369 trf 3 9.3 3 100 0 56 0 0 32 67 0.91 TGT chr1 13322704 13322734 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 13324464 13324503 trf 1 39.0 1 94 0 69 97 0 2 0 0.17 A chr1 13327648 13327808 trf 11 15.4 11 78 14 65 23 0 76 0 0.83 GAGAGGAGAGG chr1 13327652 13327807 trf 6 27.7 6 78 13 145 21 0 77 0 0.81 GGAGGG chr1 13327687 13327804 trf 5 21.8 5 83 13 144 21 0 78 0 0.75 GGGGA chr1 13327868 13327916 trf 4 12.0 4 100 0 96 25 0 75 0 0.81 GGGA chr1 13330309 13330360 trf 2 25.5 2 91 0 84 3 47 0 49 1.20 TC chr1 13333873 13333903 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 13341016 13341051 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 13344707 13344816 trf 4 27.2 4 98 0 155 68 0 31 0 0.90 AAAG chr1 13344725 13344756 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 13354756 13354784 trf 4 7.0 4 100 0 56 50 0 25 25 1.50 GAAT chr1 13359236 13359278 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 13360103 13360164 trf 5 12.2 5 96 0 104 77 19 3 0 0.91 AAAAC chr1 13371701 13371736 trf 4 8.8 4 93 0 61 74 0 2 22 0.95 AAAT chr1 13378174 13378209 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 13380038 13380125 trf 2 43.5 2 88 0 129 48 1 50 0 1.08 AG chr1 13384092 13384154 trf 2 31.0 2 80 0 70 45 45 6 3 1.45 CA chr1 13384998 13385196 trf 6 32.0 6 93 6 342 33 16 50 0 1.45 GAGGCA chr1 13385141 13385187 trf 8 6.2 8 80 19 64 36 13 50 0 1.41 AGAGGCAG chr1 13386575 13386629 trf 8 7.1 8 83 10 60 0 72 1 25 0.95 CTCTCCCC chr1 13389797 13389857 trf 2 30.0 2 96 0 111 48 50 0 1 1.11 AC chr1 13391020 13391049 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 13395041 13395082 trf 3 13.7 3 100 0 82 68 31 0 0 0.90 AAC chr1 13395505 13395603 trf 4 24.8 4 78 6 65 40 1 58 0 1.05 GGAA chr1 13395509 13395603 trf 8 11.9 8 83 2 82 40 1 58 0 1.05 GGAAGGAG chr1 13396284 13396317 trf 4 8.2 4 93 0 57 72 24 3 0 0.98 AAAC chr1 13402398 13402476 trf 5 15.6 5 100 0 156 0 41 0 58 0.98 CTCTT chr1 13402472 13402543 trf 12 6.2 11 83 16 83 0 70 1 28 0.96 TCTCCCCTCCC chr1 13402473 13402549 trf 5 13.8 5 77 22 73 0 72 1 26 0.93 CTCCC chr1 13404876 13404917 trf 3 13.7 3 100 0 82 68 31 0 0 0.90 AAC chr1 13406710 13406745 trf 6 5.8 6 93 0 52 51 8 37 2 1.47 AGAGAC chr1 13408078 13408311 trf 4 58.0 4 90 0 277 0 33 0 66 0.96 TCTT chr1 13408829 13408855 trf 11 2.4 11 100 0 52 50 19 15 15 1.79 CAAAATGAGCT chr1 13409259 13409285 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 13413933 13413970 trf 2 19.0 2 94 5 67 0 0 51 48 1.00 TG chr1 13418478 13418524 trf 4 11.2 4 78 21 51 2 71 0 26 0.97 CTCC chr1 13421862 13421897 trf 3 11.7 3 100 0 70 31 0 34 34 1.58 TGA chr1 13421895 13421935 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 13424230 13424280 trf 4 12.5 4 100 0 100 26 0 0 74 0.83 TATT chr1 13425268 13425299 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 13426236 13426270 trf 5 6.8 5 96 0 50 0 11 88 0 0.52 GGGGC chr1 13429627 13429675 trf 4 12.0 4 100 0 96 0 75 0 25 0.81 CCCT chr1 13429672 13429757 trf 4 21.0 4 77 15 86 3 45 0 50 1.18 CCTT chr1 13429754 13429815 trf 4 15.2 4 96 0 113 0 27 0 72 0.85 CTTT chr1 13432549 13432661 trf 4 28.5 4 90 3 102 0 34 0 65 0.93 TTCT chr1 13432551 13432675 trf 12 10.5 12 83 6 119 0 35 0 63 1.00 CTTTCTTTCTTC chr1 13434357 13434523 trf 5 37.2 4 97 1 80 0 29 0 70 0.88 CTTT chr1 13434358 13434450 trf 5 18.4 5 100 0 184 0 19 0 80 0.71 TTTCT chr1 13434450 13434564 trf 4 28.2 4 96 1 165 0 44 0 55 0.99 CTTC chr1 13437389 13437418 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 13438611 13438705 trf 2 47.5 2 93 2 163 50 0 48 1 1.07 AG chr1 13440617 13440668 trf 1 51.0 1 92 0 66 92 5 1 0 0.46 A chr1 13443173 13443212 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 13446374 13446427 trf 6 8.8 6 97 0 97 33 47 0 18 1.49 CATCAC chr1 13446733 13446781 trf 3 16.0 3 86 0 60 41 0 58 0 0.98 AGG chr1 13448293 13448391 trf 4 24.5 4 93 0 142 0 30 0 69 0.89 TTTC chr1 13448304 13448418 trf 12 9.6 12 90 1 131 0 34 0 65 0.93 CTTCCTTTCTTT chr1 13448388 13448419 trf 4 8.0 4 92 7 55 0 48 0 51 1.00 CTTC chr1 13449018 13449068 trf 1 50.0 1 91 0 82 96 0 4 0 0.24 A chr1 13451805 13451837 trf 4 8.2 4 93 6 57 75 25 0 0 0.81 ACAA chr1 13460836 13460864 trf 4 7.0 4 100 0 56 0 25 25 50 1.50 TGTC chr1 13460842 13460893 trf 12 4.2 12 84 0 57 1 33 15 49 1.56 TCTGTCTCTCTC chr1 13461363 13461518 trf 4 38.8 4 84 0 166 21 30 2 45 1.66 TCTA chr1 13463882 13463991 trf 2 57.0 2 70 12 68 0 47 1 50 1.11 CT chr1 13465015 13465044 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 13466675 13466701 trf 2 13.0 2 100 0 52 50 0 50 0 1.00 GA chr1 13470516 13470582 trf 4 16.5 4 78 12 73 74 24 1 0 0.91 AAAC chr1 13470735 13470795 trf 4 15.0 4 96 0 111 0 26 0 73 0.84 CTTT chr1 13482162 13482189 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 13483181 13483210 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 13483768 13483814 trf 4 11.8 4 77 13 51 0 2 26 71 0.97 TTGT chr1 13488607 13488641 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 13490968 13490998 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 13492202 13492245 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 13493182 13493277 trf 6 15.7 6 86 11 124 0 33 0 66 0.92 TTCTCT chr1 13493187 13493409 trf 4 54.8 4 79 12 132 0 35 0 64 0.97 CTTT chr1 13498529 13498560 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 13498941 13499497 trf 4 136.8 4 75 7 260 0 60 0 39 1.00 TCCC chr1 13521767 13521802 trf 11 3.0 12 91 8 63 0 0 34 65 0.93 GGTTTTGGTTTT chr1 13521767 13521802 trf 6 6.0 6 93 6 63 0 0 34 65 0.93 GGTTTT chr1 13522586 13522644 trf 8 7.8 8 79 14 52 27 3 24 44 1.69 TATGTATG chr1 13522606 13522644 trf 4 10.0 4 83 11 53 28 0 21 50 1.49 TGTA chr1 13522759 13522833 trf 2 37.0 2 97 0 139 0 0 48 51 1.00 GT chr1 13526309 13526355 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 13528253 13528295 trf 4 10.8 4 89 5 68 73 26 0 0 0.83 AAAC chr1 13530344 13530437 trf 12 7.9 12 74 4 91 38 46 1 13 1.51 CACACACACACT chr1 13530344 13530437 trf 6 15.8 6 72 12 68 38 46 1 13 1.51 CACACT chr1 13532485 13532542 trf 2 29.5 2 84 7 73 5 0 43 50 1.24 TG chr1 13536052 13536109 trf 5 12.0 5 83 14 52 0 1 19 78 0.83 GTTTT chr1 13536068 13536108 trf 4 9.2 4 94 5 53 0 0 22 77 0.77 TGTT chr1 13538527 13538555 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 13539387 13539449 trf 2 31.0 2 90 6 99 3 48 0 48 1.17 CT chr1 13539449 13539557 trf 4 26.8 4 92 1 144 0 55 0 44 0.99 TTCC chr1 13546933 13546990 trf 2 28.0 2 84 10 71 1 3 43 50 1.29 GT chr1 13548020 13548079 trf 4 12.4 5 90 5 56 79 18 0 1 0.81 AAAAC chr1 13550676 13550715 trf 8 5.0 8 84 3 53 0 41 38 20 1.53 GCTCTGGC chr1 13551433 13551459 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 13557556 13557595 trf 8 5.0 8 84 3 53 0 41 38 20 1.53 GCTCTGGC chr1 13566058 13566096 trf 10 3.8 10 89 6 51 63 0 34 2 1.09 AGAAAAGAGG chr1 13578860 13578898 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 13583784 13583816 trf 2 16.0 2 93 0 55 50 46 0 3 1.17 AC chr1 13585530 13585565 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 13589897 13589938 trf 1 41.0 1 100 0 82 100 0 0 0 0.00 A chr1 13592132 13592160 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 13592357 13592514 trf 8 19.6 8 87 0 197 0 42 5 52 1.25 CTCTCTCT chr1 13592357 13592514 trf 6 26.2 6 87 0 197 0 42 5 52 1.25 CTCTCT chr1 13593522 13593567 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 13593760 13593859 trf 2 49.0 2 82 6 119 1 45 5 48 1.31 CT chr1 13600962 13601158 trf 6 32.7 6 81 0 203 0 49 5 44 1.25 TCTCTC chr1 13600962 13601158 trf 4 49.0 4 81 0 203 0 49 5 44 1.25 TCTC chr1 13601862 13601909 trf 5 9.4 5 100 0 94 80 0 0 19 0.70 AATAA chr1 13611928 13611961 trf 2 16.5 2 93 0 57 0 48 0 51 1.00 CT chr1 13622517 13622543 trf 4 6.5 4 100 0 52 23 26 0 50 1.50 TCTA chr1 13622648 13622679 trf 4 7.8 4 100 0 62 25 25 0 48 1.52 ATCT chr1 13634113 13634147 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 13635588 13635635 trf 3 15.7 3 95 0 85 36 34 29 0 1.58 CAG chr1 13638108 13638143 trf 4 8.8 4 100 0 70 0 25 22 51 1.48 TCTG chr1 13642730 13642786 trf 1 56.0 1 90 0 76 92 3 3 0 0.44 A chr1 13644280 13644305 trf 10 2.5 10 100 0 50 32 0 52 16 1.44 AGAGGGAGTT chr1 13645737 13645809 trf 4 18.0 4 82 5 74 0 52 0 47 1.00 TTCC chr1 13653140 13653166 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 13664740 13664786 trf 1 46.0 1 82 0 56 91 4 4 0 0.51 A chr1 13667200 13667237 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 13671050 13671085 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 13676794 13676825 trf 2 15.5 2 100 0 62 48 0 51 0 1.00 GA chr1 13677536 13677579 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 13680190 13680235 trf 10 4.5 10 82 0 63 0 37 13 48 1.42 GTCTCTCTCT chr1 13680195 13680235 trf 6 6.7 6 88 0 53 0 37 12 50 1.41 TCTCTG chr1 13682314 13682368 trf 4 13.5 4 100 0 108 24 25 0 50 1.50 TCTA chr1 13685434 13685475 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 13687905 13687931 trf 12 2.2 12 100 0 52 57 19 7 15 1.62 ACAAAAATCAGT chr1 13694412 13694460 trf 1 48.0 1 78 0 51 0 8 2 89 0.56 T chr1 13698021 13698046 trf 12 2.1 12 100 0 50 0 40 16 44 1.47 TTTCCTGGCCTC chr1 13699545 13699643 trf 5 19.0 5 81 6 97 73 19 6 1 1.10 ACAAA chr1 13703532 13703578 trf 2 23.5 2 95 4 85 0 0 47 52 1.00 TG chr1 13708928 13708962 trf 5 6.8 5 86 0 50 2 52 20 23 1.60 CTGCC chr1 13708975 13709130 trf 5 31.0 5 99 0 175 0 49 0 50 1.00 TTCCT chr1 13710999 13711083 trf 11 7.5 11 80 18 84 83 16 0 0 0.65 AAAAACAAAAC chr1 13711005 13711082 trf 10 7.4 11 80 14 67 81 18 0 0 0.68 AAAACAACAAC chr1 13718106 13718134 trf 6 4.7 6 100 0 56 0 82 0 17 0.68 CCTCCC chr1 13718132 13718311 trf 3 60.0 3 98 1 342 0 34 0 65 0.93 TCT chr1 13719319 13719344 trf 12 2.1 12 100 0 50 16 76 0 8 1.02 CTCCCCCACCCA chr1 13739340 13739502 trf 3 54.7 3 91 2 166 42 1 56 0 1.07 AGG chr1 13748092 13748120 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 13754642 13754683 trf 4 10.2 4 100 0 82 24 26 24 24 2.00 CAGT chr1 13785174 13785220 trf 2 23.0 2 86 0 65 6 0 47 45 1.28 TG chr1 13792776 13792818 trf 4 10.5 4 100 0 84 76 0 0 23 0.79 AATA chr1 13796692 13796730 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 13797268 13797298 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 13798311 13798342 trf 8 3.9 8 95 0 53 9 25 38 25 1.86 CCTGTGAG chr1 13799906 13799938 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 13803209 13803247 trf 2 19.0 2 88 0 58 55 0 44 0 0.99 AG chr1 13803982 13804047 trf 2 32.5 2 90 0 103 49 3 1 46 1.27 AT chr1 13804046 13804080 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 13821892 13821935 trf 4 10.5 4 92 2 68 27 46 23 2 1.64 AGCC chr1 13822052 13822122 trf 2 35.0 2 97 0 131 48 0 51 0 1.00 GA chr1 13824532 13824572 trf 2 20.0 2 94 0 71 50 47 0 2 1.14 AC chr1 13828683 13828718 trf 4 8.5 4 87 6 52 71 25 0 2 1.00 AAAC chr1 13831399 13831464 trf 12 6.0 11 87 12 57 36 0 61 1 1.05 AAGAGGAGGAG chr1 13831413 13831465 trf 3 17.3 3 100 0 104 32 0 67 0 0.91 GAG chr1 13833977 13834008 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 13834065 13834113 trf 4 12.2 4 95 4 89 0 50 0 50 1.00 TCCT chr1 13837769 13837801 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 13839364 13839389 trf 12 2.1 12 100 0 50 76 0 8 16 1.02 AAGAAATAAAAT chr1 13839706 13839745 trf 4 9.8 4 100 0 78 0 25 0 74 0.82 CTTT chr1 13844962 13845158 trf 9 21.8 9 88 0 275 0 60 1 38 1.06 CTCCTCCTC chr1 13844962 13845158 trf 6 32.7 6 88 0 275 0 60 1 38 1.06 CTCCTC chr1 13856704 13856752 trf 12 4.0 12 100 0 96 33 25 25 16 1.96 TAGACCTGCAGA chr1 13858171 13858298 trf 4 31.8 4 88 0 182 50 6 43 0 1.27 AGAG chr1 13862143 13862178 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 13862297 13862433 trf 2 66.5 2 91 7 220 48 47 2 0 1.22 AC chr1 13863514 13863553 trf 5 7.8 5 100 0 78 79 20 0 0 0.73 AAACA chr1 13866392 13866501 trf 6 18.2 6 92 7 186 33 32 1 33 1.69 TCACTA chr1 13867967 13868004 trf 4 9.2 4 100 0 74 51 0 24 24 1.49 ATAG chr1 13873736 13873782 trf 6 7.7 6 100 0 92 84 15 0 0 0.62 AAAACA chr1 13881656 13881731 trf 4 19.2 4 93 5 127 53 0 46 0 1.00 AAGG chr1 13889991 13890046 trf 5 11.8 5 90 5 73 0 14 1 83 0.73 TTTTC chr1 13904409 13904435 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 13905789 13905941 trf 4 38.5 4 86 9 134 0 60 0 39 0.97 CTTC chr1 13905964 13906007 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 13912022 13912083 trf 5 12.2 5 100 0 122 59 40 0 0 0.98 CCAAA chr1 13914168 13914206 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 13921235 13921289 trf 12 4.3 12 84 9 72 0 42 0 57 0.98 CTTTCTCTCTCT chr1 13921238 13921283 trf 2 22.5 2 95 0 81 0 46 0 53 1.00 TC chr1 13923192 13923231 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 13925302 13925344 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 13925343 13925398 trf 2 27.5 2 96 0 101 49 49 0 1 1.11 CA chr1 13933254 13933366 trf 5 21.8 5 73 17 63 73 24 1 0 0.99 AAAAC chr1 13933688 13933717 trf 3 9.7 3 100 0 58 68 31 0 0 0.89 AAC chr1 13934202 13934250 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 13937951 13938058 trf 2 53.5 2 92 0 133 43 1 6 47 1.40 AT chr1 13938139 13938165 trf 4 6.5 4 100 0 52 26 0 0 73 0.84 ATTT chr1 13940542 13940671 trf 8 15.8 8 76 16 86 31 0 68 0 0.95 GGAGAGGG chr1 13940545 13940666 trf 6 20.5 6 75 17 94 30 0 68 0 0.95 GAGAGG chr1 13940545 13940672 trf 11 11.4 11 72 17 93 31 0 67 0 0.96 GAGAGGGAGGG chr1 13945636 13945677 trf 10 4.1 10 90 0 64 51 9 0 39 1.35 ATATATATAC chr1 13945636 13945675 trf 2 19.5 2 83 0 51 51 7 0 41 1.31 AT chr1 13969128 13969170 trf 4 10.5 4 85 10 50 71 28 0 0 0.86 AAAC chr1 13977625 13977675 trf 5 10.0 5 100 0 100 80 20 0 0 0.72 AAAAC chr1 13981692 13981723 trf 7 4.4 7 100 0 62 12 0 74 12 1.08 GGGGATG chr1 13981927 13981981 trf 5 10.8 5 100 0 108 81 18 0 0 0.69 AAAAC chr1 13987356 13987407 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 13992690 13992728 trf 6 6.3 6 93 0 67 0 52 0 47 1.00 TCCTCT chr1 13994450 13994488 trf 2 19.5 2 89 5 60 50 47 0 2 1.15 CA chr1 13996905 13996951 trf 5 9.4 5 95 2 76 0 34 0 65 0.93 TTCTC chr1 14000296 14000359 trf 2 31.5 2 90 0 90 46 47 4 1 1.33 AC chr1 14000358 14000408 trf 2 25.0 2 95 0 91 48 0 52 0 1.00 AG chr1 14005264 14005661 trf 5 77.4 5 85 8 176 44 0 55 0 1.04 GAAGG chr1 14005265 14005531 trf 5 53.0 5 86 5 259 50 0 49 0 1.06 AAGGA chr1 14005673 14005706 trf 12 2.8 12 82 17 50 48 39 6 6 1.53 AATCAACCAGCC chr1 14008689 14008761 trf 4 18.0 4 88 0 99 68 0 31 0 0.90 AAAG chr1 14015011 14015078 trf 5 13.4 5 100 0 134 80 0 19 0 0.71 AAGAA chr1 14019189 14019236 trf 8 6.0 8 92 2 78 91 8 0 0 0.42 AAAAAAAC chr1 14019189 14019235 trf 1 46.0 1 86 0 65 93 6 0 0 0.35 A chr1 14020808 14020854 trf 3 15.3 3 100 0 92 32 0 0 67 0.91 TAT chr1 14034489 14034554 trf 5 13.2 5 91 3 96 0 21 3 75 0.94 TCTTT chr1 14038835 14038887 trf 12 4.5 12 80 9 54 86 13 0 0 0.57 CAAAAAAAACAA chr1 14038835 14038878 trf 12 3.6 12 93 6 70 90 9 0 0 0.45 CAAAAAAAAAAA chr1 14038836 14038878 trf 1 42.0 1 85 0 57 92 7 0 0 0.37 A chr1 14040629 14040673 trf 10 4.3 10 82 2 52 36 0 15 47 1.46 TGTATATATA chr1 14040728 14040773 trf 2 22.5 2 95 0 81 48 0 51 0 1.00 AG chr1 14049790 14049837 trf 2 23.5 2 88 0 67 53 42 0 4 1.20 AC chr1 14050570 14050767 trf 4 46.8 4 83 9 139 68 0 30 1 0.97 AAAG chr1 14050632 14050768 trf 10 15.1 9 82 14 108 72 0 27 0 0.85 AGAAAGAAA chr1 14050654 14050768 trf 5 22.6 5 83 7 99 72 0 27 0 0.84 AAAGA chr1 14050813 14050896 trf 12 7.3 12 70 16 61 0 56 3 39 1.17 CCTTCCCTCCCT chr1 14052685 14052715 trf 8 3.8 8 90 0 51 3 20 36 40 1.69 GTGTGTCC chr1 14052709 14052753 trf 2 22.0 2 90 0 70 4 0 45 50 1.22 GT chr1 14056952 14057008 trf 4 14.0 4 100 0 112 0 75 0 25 0.81 CCTC chr1 14057006 14058129 trf 4 279.8 4 84 6 631 1 37 0 61 1.05 TCTT chr1 14058033 14058065 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 CT chr1 14059833 14059872 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 14060173 14060211 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 14070840 14070891 trf 4 12.5 4 95 4 93 0 47 0 52 1.00 TTCC chr1 14071436 14071519 trf 2 41.5 2 95 0 148 49 48 0 2 1.14 CA chr1 14071776 14071834 trf 4 14.5 4 100 0 116 24 50 0 25 1.50 TCCA chr1 14071831 14071904 trf 4 18.2 4 97 0 137 26 26 0 47 1.52 ATCT chr1 14093022 14093063 trf 10 4.2 10 78 15 50 80 0 2 17 0.82 AATAAATAAA chr1 14095231 14095297 trf 2 33.0 2 96 0 123 1 0 48 50 1.10 GT chr1 14095299 14095504 trf 6 32.8 6 71 17 73 35 0 63 0 1.02 GAGAGG chr1 14095299 14095331 trf 2 16.0 2 93 0 55 46 0 53 0 1.00 GA chr1 14095303 14095505 trf 8 26.8 8 70 20 82 35 0 63 0 1.02 GAGAGAGG chr1 14095398 14095458 trf 7 8.1 7 78 14 50 23 0 76 0 0.78 GGGGAGG chr1 14095410 14095458 trf 10 5.2 9 76 14 53 25 0 75 0 0.81 GGGGGAGAG chr1 14107669 14107794 trf 4 30.8 4 81 6 128 0 49 0 50 1.00 CTTC chr1 14107794 14107843 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 14107840 14107882 trf 4 10.5 4 100 0 84 0 26 0 73 0.83 TCTT chr1 14108948 14108993 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 14112619 14112656 trf 2 19.0 2 94 5 67 0 0 51 48 1.00 TG chr1 14125053 14125128 trf 9 8.3 9 75 11 73 1 53 1 44 1.17 CTCCTCTTC chr1 14125054 14125138 trf 12 7.2 12 76 8 84 2 52 1 44 1.21 TCCTCCTCCTCT chr1 14131015 14131090 trf 2 37.5 2 78 0 60 42 6 6 44 1.57 TA chr1 14134683 14134711 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 14135118 14135152 trf 3 11.3 3 93 0 59 70 29 0 0 0.87 AAC chr1 14135871 14135912 trf 5 9.0 5 94 5 54 0 0 21 78 0.76 GTTTT chr1 14135873 14135911 trf 8 4.3 9 90 9 53 0 0 21 78 0.74 TTTGTTTTG chr1 14135950 14135975 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TTTG chr1 14140190 14140243 trf 5 10.6 5 100 0 106 0 0 18 81 0.70 TTTTG chr1 14142777 14142832 trf 6 9.2 6 79 0 56 56 18 23 1 1.51 AGACAG chr1 14143556 14143587 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 14145531 14145604 trf 5 14.8 5 94 2 121 78 19 2 0 0.88 AAAAC chr1 14149156 14149189 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 AAAC chr1 14150277 14150323 trf 2 23.0 2 95 0 83 50 47 0 2 1.13 AC chr1 14159710 14159743 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 14165500 14165534 trf 10 3.3 11 84 16 54 0 50 5 44 1.26 CTCTCTCTCTG chr1 14169894 14169934 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 14172808 14172854 trf 2 23.5 2 91 4 67 0 4 45 50 1.21 GT chr1 14176146 14176217 trf 3 25.0 3 80 13 80 0 67 0 32 0.91 CCT chr1 14176159 14176247 trf 6 14.3 6 77 13 54 0 56 0 43 0.99 CTCCTT chr1 14176209 14176250 trf 9 4.6 9 81 0 55 0 41 0 58 0.98 CTTCTCCTT chr1 14185234 14185263 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 14187285 14187506 trf 4 55.2 4 89 0 316 49 43 3 2 1.34 CACA chr1 14187285 14187506 trf 10 22.1 10 89 0 316 49 43 3 2 1.34 CACACACACA chr1 14195416 14195457 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 14197006 14197615 trf 3 198.0 3 84 9 488 60 0 39 0 1.00 AGA chr1 14197226 14197289 trf 4 15.2 4 87 12 92 71 0 28 0 0.86 AAGA chr1 14197475 14197526 trf 4 12.2 4 84 15 68 70 0 29 0 0.87 AAGA chr1 14197522 14197681 trf 12 13.3 12 87 1 95 52 0 47 0 1.05 AGAAGGAGGAGG chr1 14197616 14197679 trf 3 21.0 3 90 0 90 39 0 60 0 0.97 GAG chr1 14197703 14197755 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 14210809 14210876 trf 1 67.0 1 77 0 53 86 1 5 5 0.76 A chr1 14215571 14215611 trf 5 8.2 5 94 5 73 0 20 0 80 0.72 TTTCT chr1 14227139 14227177 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 14227916 14227943 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 14228012 14228105 trf 4 23.2 4 95 0 159 0 27 0 72 0.85 TTTC chr1 14228106 14228140 trf 5 7.2 5 87 12 54 0 58 0 41 0.98 CCCTT chr1 14228158 14228211 trf 12 4.4 12 92 0 70 0 43 0 56 0.99 TTTCTCTCTCTC chr1 14228160 14228203 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 14237634 14237697 trf 4 15.5 4 80 9 74 0 74 0 25 0.82 CTCC chr1 14237656 14237713 trf 7 8.7 7 72 14 50 0 73 1 24 0.92 CCCTCTC chr1 14240357 14240439 trf 6 13.7 6 88 0 101 0 57 0 42 0.98 TCCTCC chr1 14240357 14240442 trf 9 9.8 9 76 19 67 0 56 0 43 0.99 TCCTTCTCC chr1 14245783 14245844 trf 2 30.5 2 89 0 95 45 0 4 49 1.23 AT chr1 14246041 14246130 trf 4 22.2 4 78 0 88 44 5 5 43 1.51 ATAT chr1 14246043 14246132 trf 10 9.1 10 76 4 65 44 6 5 42 1.54 ATATATATAC chr1 14246924 14246961 trf 3 12.7 3 94 5 67 70 0 0 29 0.88 AAT chr1 14246959 14247017 trf 3 19.7 3 89 3 91 72 0 27 0 0.85 AAG chr1 14253373 14253412 trf 2 20.0 2 94 5 71 48 51 0 0 1.00 CA chr1 14256750 14256778 trf 7 4.0 7 100 0 56 85 14 0 0 0.59 AAAAAAC chr1 14280860 14280894 trf 5 6.8 5 86 0 50 17 0 2 79 0.86 TTTTA chr1 14281311 14281352 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 14283875 14283921 trf 3 15.3 3 95 0 83 32 32 0 34 1.58 CTA chr1 14283922 14283952 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 14299541 14299567 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 14305157 14305202 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 14314684 14314734 trf 2 25.0 2 79 0 55 44 8 48 0 1.32 AG chr1 14314895 14314932 trf 4 9.2 4 87 0 56 51 0 27 21 1.48 AGAT chr1 14316780 14316816 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 14320622 14320672 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 14321805 14321835 trf 6 5.0 6 100 0 60 0 0 50 50 1.00 TGGTGT chr1 14321831 14321869 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 14324779 14324813 trf 1 34.0 1 87 0 50 0 0 5 94 0.32 T chr1 14327594 14327622 trf 8 3.5 8 100 0 56 10 89 0 0 0.49 CCCCCCAC chr1 14327898 14327982 trf 4 20.5 4 92 4 141 72 0 27 0 0.85 AGAA chr1 14327986 14328029 trf 2 21.5 2 85 0 50 53 6 39 0 1.28 AG chr1 14330073 14330213 trf 2 76.0 2 77 16 151 52 0 0 47 1.05 TA chr1 14330624 14330668 trf 4 11.2 4 87 4 63 0 2 22 75 0.92 TTTG chr1 14333621 14333672 trf 5 10.2 5 100 0 102 0 0 19 80 0.71 TGTTT chr1 14336964 14337065 trf 6 16.8 6 95 0 130 0 56 0 43 0.99 CTCTCT chr1 14339836 14339894 trf 2 29.0 2 96 0 107 50 48 0 1 1.11 AC chr1 14352815 14352952 trf 10 13.9 10 79 3 143 47 2 47 2 1.29 GAGAGAGAGA chr1 14352815 14352952 trf 4 34.8 4 79 2 143 47 2 47 2 1.29 GAGA chr1 14354998 14355028 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 14356827 14356874 trf 2 23.5 2 95 0 85 51 46 0 2 1.13 AC chr1 14358363 14358425 trf 4 15.5 4 100 0 124 0 50 0 50 1.00 CTTC chr1 14358423 14358454 trf 2 15.5 2 100 0 62 0 51 0 48 1.00 CT chr1 14358454 14358529 trf 3 25.0 3 100 0 150 0 66 0 33 0.92 CCT chr1 14358527 14358571 trf 3 14.7 3 100 0 88 0 34 0 65 0.93 CTT chr1 14359986 14360040 trf 2 27.0 2 92 0 90 53 0 46 0 1.00 GA chr1 14361001 14361420 trf 4 104.0 4 88 5 432 65 0 33 0 0.95 AAAG chr1 14369851 14369916 trf 2 32.5 2 96 0 121 47 50 0 1 1.10 CA chr1 14371878 14371929 trf 12 4.2 12 89 0 75 5 1 41 50 1.37 TGTGTGTATGTG chr1 14371878 14371929 trf 2 25.5 2 79 0 57 5 1 41 50 1.37 TG chr1 14394321 14394370 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 14396198 14396224 trf 11 2.4 11 100 0 52 88 0 11 0 0.52 GAAAAAAAAAA chr1 14397002 14397060 trf 6 10.0 6 90 7 84 0 29 20 50 1.49 CTCTGT chr1 14397005 14397092 trf 6 14.5 6 95 0 75 0 17 32 50 1.46 TGTCTG chr1 14397045 14397094 trf 2 24.5 2 91 0 80 0 4 44 51 1.20 TG chr1 14400177 14400246 trf 2 34.5 2 94 0 120 0 1 46 52 1.09 TG chr1 14400469 14400697 trf 5 45.8 5 92 4 275 0 24 0 75 0.80 TTTTC chr1 14402074 14402115 trf 12 3.4 12 86 0 55 65 0 24 9 1.22 AAAGAAAGAATG chr1 14402112 14402163 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 14403530 14403573 trf 5 8.6 5 100 0 86 0 0 18 81 0.69 TTTTG chr1 14407093 14407164 trf 4 18.0 4 85 2 99 2 70 0 26 1.01 CTCC chr1 14408120 14408154 trf 6 6.0 6 86 13 54 0 35 17 47 1.48 GTCTCT chr1 14413017 14413058 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 14414667 14414724 trf 2 28.5 2 96 0 105 49 49 0 1 1.11 AC chr1 14415280 14415339 trf 2 29.5 2 92 0 100 1 1 47 49 1.21 TG chr1 14416490 14416537 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 14427909 14427987 trf 4 19.0 4 84 10 70 0 0 32 67 0.90 TTTG chr1 14428494 14428542 trf 4 11.0 4 83 16 60 2 47 0 50 1.12 TCCT chr1 14438770 14438830 trf 5 11.8 5 92 3 102 80 0 20 0 0.72 GAAAA chr1 14438919 14438960 trf 3 13.7 3 85 10 57 2 60 0 36 1.10 CTC chr1 14438940 14439206 trf 12 22.2 12 89 2 266 0 45 0 53 1.03 CTTCTCCTTCTT chr1 14438958 14439145 trf 6 31.0 6 98 0 230 0 41 0 58 0.98 CTTCTT chr1 14439105 14439283 trf 6 28.8 6 73 17 71 0 48 1 49 1.12 TCTTCC chr1 14439145 14439272 trf 3 42.3 3 73 9 89 0 54 1 43 1.15 TCC chr1 14442355 14442407 trf 4 13.5 4 88 8 81 78 21 0 0 0.74 CAAA chr1 14462517 14462542 trf 12 2.1 12 100 0 50 40 44 0 16 1.47 CTCACAACCATA chr1 14464280 14464371 trf 2 45.5 2 87 0 128 50 5 43 0 1.25 GA chr1 14470180 14470244 trf 10 5.7 12 85 10 59 0 0 12 87 0.54 TTTTTTTGTTTG chr1 14470207 14470243 trf 1 36.0 1 100 0 72 0 0 0 100 0.00 T chr1 14473210 14473241 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 14473609 14473670 trf 2 30.5 2 96 0 113 0 52 0 47 1.00 CT chr1 14473798 14473840 trf 4 10.8 4 80 14 52 0 0 21 78 0.75 TTTG chr1 14474260 14474313 trf 2 26.5 2 100 0 106 0 0 50 49 1.00 GT chr1 14483202 14483237 trf 3 11.7 3 100 0 70 34 0 31 34 1.58 TAG chr1 14486432 14486462 trf 12 2.5 12 94 0 51 46 10 0 43 1.37 CATTAAATTTAA chr1 14491916 14491963 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 14497337 14497393 trf 3 18.7 3 100 0 112 0 0 66 33 0.92 TGG chr1 14497798 14497849 trf 5 10.2 5 100 0 102 39 0 0 60 0.97 TATTA chr1 14502228 14502264 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 14504318 14504354 trf 9 4.0 9 88 0 54 44 0 55 0 0.99 AAGAGGAGG chr1 14504698 14504750 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 14505726 14505760 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 14505762 14505811 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 14511597 14511643 trf 2 23.0 2 88 0 56 54 2 41 2 1.25 GA chr1 14514252 14514286 trf 12 2.7 13 90 4 52 0 17 0 82 0.67 TTTTCTTTTCTCT chr1 14520537 14520565 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 14534047 14534098 trf 10 4.9 10 80 15 59 86 13 0 0 0.58 AAAAAAAAAC chr1 14534047 14534101 trf 9 6.1 9 76 16 51 87 12 0 0 0.56 AAAAACAAA chr1 14534047 14534101 trf 6 7.9 7 77 22 53 87 12 0 0 0.56 AAAAAAC chr1 14539342 14539393 trf 2 25.5 2 100 0 102 0 0 50 49 1.00 GT chr1 14544464 14544524 trf 10 6.1 10 76 16 54 1 0 26 71 0.95 TTGGTTTGTT chr1 14547125 14547166 trf 7 5.7 7 88 5 64 82 14 2 0 0.76 AAAAACA chr1 14553757 14553825 trf 2 34.0 2 93 0 118 50 0 50 0 1.00 GA chr1 14560526 14560564 trf 2 19.0 2 94 0 67 52 47 0 0 1.00 AC chr1 14564761 14564868 trf 10 10.7 10 86 0 133 42 1 56 0 1.10 AGAGAGAGAG chr1 14564761 14564868 trf 4 26.8 4 93 0 133 42 1 56 0 1.10 AGAG chr1 14572857 14572898 trf 5 7.8 5 89 10 64 75 0 24 0 0.80 AAGAA chr1 14572898 14573020 trf 5 24.8 5 96 3 230 40 0 59 0 0.98 GAAGG chr1 14584610 14584663 trf 2 26.5 2 96 0 97 52 0 47 0 1.00 AG chr1 14586768 14586821 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 14598156 14598249 trf 4 23.0 4 93 2 150 72 1 26 0 0.92 AAAG chr1 14598248 14598324 trf 4 19.0 4 97 0 143 23 0 76 0 0.79 GGAG chr1 14598325 14598399 trf 4 18.5 4 100 0 148 51 0 48 0 1.00 AAGG chr1 14602054 14602230 trf 4 42.8 4 84 5 163 66 2 31 0 1.04 GAAA chr1 14602141 14602170 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 14602173 14602215 trf 9 4.8 9 88 5 59 73 9 16 0 1.08 AAAGAAAAC chr1 14604669 14604697 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 14614589 14614625 trf 4 9.2 4 93 6 65 77 22 0 0 0.76 ACAA chr1 14618231 14618297 trf 2 32.5 2 96 3 123 50 48 0 1 1.10 AC chr1 14620406 14620439 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 14628321 14628387 trf 2 33.0 2 100 0 132 50 0 0 50 1.00 AT chr1 14642729 14642756 trf 11 2.5 11 100 0 54 92 7 0 0 0.38 AAAAAAAACAA chr1 14643731 14644082 trf 12 29.2 12 79 0 315 48 40 2 8 1.48 ACACACACACAC chr1 14645211 14645322 trf 5 22.2 5 99 0 186 0 63 0 36 0.94 CTCCT chr1 14645213 14645372 trf 5 31.8 5 93 0 120 0 66 2 31 1.05 CCTCC chr1 14654938 14654975 trf 2 18.5 2 100 0 74 0 48 0 51 1.00 TC chr1 14654974 14655006 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 14656290 14656340 trf 4 12.5 4 80 16 59 2 50 22 26 1.60 GCCT chr1 14657216 14657257 trf 4 10.2 4 100 0 82 24 24 0 51 1.49 TCTA chr1 14661118 14661149 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 14675013 14675057 trf 2 22.0 2 95 0 79 0 52 0 47 1.00 TC chr1 14675997 14676033 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 14681785 14681896 trf 8 13.1 8 71 17 64 6 11 32 49 1.64 TGTGTCTG chr1 14681785 14681810 trf 10 2.5 10 100 0 50 0 8 40 52 1.31 TGTGTCTGTG chr1 14681791 14681882 trf 12 7.6 12 69 9 51 6 10 31 50 1.63 TGTGTGTGTCTG chr1 14681867 14681901 trf 10 3.4 10 83 0 50 8 8 35 47 1.66 TGTGTCTGTA chr1 14685280 14685324 trf 3 14.7 3 81 9 54 36 2 61 0 1.09 GAG chr1 14686470 14686523 trf 2 26.5 2 100 0 106 49 0 0 50 1.00 TA chr1 14691424 14691504 trf 2 41.0 2 87 5 119 0 3 47 48 1.19 GT chr1 14693051 14693111 trf 2 30.5 2 93 3 104 48 50 1 0 1.11 AC chr1 14693927 14694057 trf 4 32.2 4 74 1 89 44 9 3 42 1.54 ATAT chr1 14693927 14694057 trf 6 21.5 6 73 1 89 44 9 3 42 1.54 ATATAT chr1 14694068 14694102 trf 10 3.4 10 87 0 50 35 0 14 50 1.44 ATATATATGT chr1 14696291 14696356 trf 4 16.2 4 96 0 121 27 0 24 47 1.52 ATGT chr1 14697874 14697918 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 14697917 14697961 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 14698482 14698538 trf 2 28.0 2 100 0 112 50 0 0 50 1.00 AT chr1 14699443 14699541 trf 5 19.8 5 94 2 171 60 37 1 1 1.11 AAACC chr1 14700064 14700101 trf 4 9.2 4 100 0 74 24 0 27 48 1.51 GTAT chr1 14700902 14701147 trf 9 23.7 12 84 13 181 0 43 0 56 0.99 TCTCTCTCTCTC chr1 14700902 14701147 trf 7 35.5 8 95 2 181 0 43 0 56 0.99 TCTCTCTC chr1 14700902 14701128 trf 12 19.5 11 84 14 191 0 41 0 58 0.98 TCTCTTCTTCT chr1 14701081 14701147 trf 4 16.5 4 96 0 105 0 54 0 45 0.99 TCTC chr1 14704810 14704835 trf 12 2.1 12 100 0 50 24 32 32 12 1.91 TGAAGCAGGCCC chr1 14707303 14707329 trf 3 8.7 3 100 0 52 0 30 34 34 1.58 TGC chr1 14711446 14711488 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 14714878 14714921 trf 4 10.5 4 95 5 77 0 23 0 76 0.78 TTCT chr1 14715508 14715582 trf 4 18.8 4 97 2 141 25 24 0 50 1.50 TATC chr1 14722698 14722725 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 14725059 14725117 trf 1 58.0 1 75 0 53 87 12 0 0 0.53 A chr1 14725061 14725119 trf 6 10.2 6 87 10 86 86 13 0 0 0.58 AAAAAC chr1 14726861 14726903 trf 2 21.0 2 95 0 75 47 0 50 2 1.14 AG chr1 14726901 14726947 trf 4 11.5 4 100 0 92 50 0 50 0 1.00 AGGA chr1 14729324 14729385 trf 10 6.3 10 73 7 63 0 0 16 83 0.64 TTTTTTGTTT chr1 14729326 14729383 trf 5 11.8 5 76 14 57 0 0 17 82 0.67 TTTTG chr1 14729687 14729750 trf 3 20.7 3 86 3 72 0 57 0 42 0.99 CTC chr1 14730694 14730841 trf 3 49.0 3 88 0 213 34 4 61 0 1.15 GAG chr1 14737181 14737214 trf 4 8.2 4 100 0 66 0 24 24 51 1.48 TGTC chr1 14741063 14741098 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 14744039 14744090 trf 4 11.8 4 84 15 66 50 0 49 0 1.00 AAGG chr1 14744088 14744137 trf 2 26.0 2 88 12 77 46 0 53 0 1.00 AG chr1 14746329 14746357 trf 4 7.0 4 100 0 56 25 25 0 50 1.50 TATC chr1 14747824 14747861 trf 2 18.5 2 94 0 65 2 48 0 48 1.15 CT chr1 14752515 14752555 trf 5 8.2 5 91 5 55 87 12 0 0 0.54 AAAAC chr1 14752746 14752794 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 14752793 14752853 trf 2 30.0 2 93 0 102 50 0 48 1 1.11 GA chr1 14754593 14754638 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 14757528 14757578 trf 5 10.0 5 91 8 84 0 0 18 82 0.68 GTTTT chr1 14758839 14758890 trf 2 26.0 2 96 4 95 49 0 50 0 1.00 GA chr1 14759580 14759610 trf 10 3.0 10 100 0 60 10 0 70 20 1.16 GATGGGTGGG chr1 14760382 14760500 trf 2 60.0 2 68 12 57 44 43 3 8 1.51 CA chr1 14763564 14763594 trf 4 7.5 4 92 0 51 73 0 3 23 0.98 AATA chr1 14763920 14763945 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 14764345 14764391 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 14765102 14765151 trf 4 13.0 4 81 12 50 2 26 18 53 1.56 TCTG chr1 14768477 14768517 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 TC chr1 14769492 14769526 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 AC chr1 14772418 14772465 trf 3 15.7 3 100 0 94 65 0 34 0 0.93 AGA chr1 14772463 14772574 trf 3 37.7 3 94 3 199 35 0 64 0 0.94 AGG chr1 14776436 14776484 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 14792952 14792992 trf 8 4.8 8 84 9 53 85 15 0 0 0.61 AAAAAAAC chr1 14794857 14794888 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 14797521 14797691 trf 4 42.8 4 89 5 238 69 0 30 0 0.89 AAGA chr1 14797573 14797632 trf 6 10.2 6 78 7 50 61 0 38 0 0.96 AGAGAG chr1 14797688 14797771 trf 4 20.8 4 92 0 121 46 0 53 0 1.00 AAGG chr1 14797920 14798015 trf 6 16.7 6 90 9 155 69 30 0 0 0.89 AAAACC chr1 14799288 14799335 trf 2 24.0 2 95 4 87 48 51 0 0 1.00 AC chr1 14809514 14809557 trf 2 21.5 2 95 0 77 0 0 46 53 1.00 TG chr1 14811562 14811630 trf 6 11.0 6 89 6 91 50 16 0 33 1.45 ATATAC chr1 14812052 14812095 trf 7 6.6 7 84 12 56 0 0 13 86 0.58 TTTTTGT chr1 14813701 14813732 trf 4 7.8 4 100 0 62 74 0 0 25 0.82 ATAA chr1 14814485 14814518 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 14815483 14815525 trf 4 10.8 4 94 5 77 23 0 0 76 0.79 TTTA chr1 14818301 14818345 trf 8 5.2 9 94 2 58 93 0 6 0 0.36 AAAAAAAGA chr1 14818301 14818337 trf 1 36.0 1 94 0 63 97 0 2 0 0.18 A chr1 14819549 14819611 trf 5 12.4 5 94 0 70 0 6 37 56 1.25 TGGTT chr1 14819588 14819864 trf 5 55.2 5 92 0 327 0 31 20 47 1.53 TTGCC chr1 14821441 14821470 trf 3 9.7 3 100 0 58 0 31 0 68 0.89 TTC chr1 14821468 14821510 trf 3 14.0 3 100 0 84 33 0 0 66 0.92 TTA chr1 14821538 14821580 trf 4 10.5 4 94 0 75 23 0 26 50 1.50 TATG chr1 14823213 14823258 trf 6 7.7 6 80 14 58 0 0 17 82 0.68 TTTTGT chr1 14824579 14824638 trf 4 14.8 4 96 0 91 20 23 5 50 1.67 TATC chr1 14824635 14824660 trf 2 12.5 2 100 0 50 48 0 0 52 1.00 TA chr1 14825502 14825578 trf 2 38.0 2 91 0 125 46 50 3 0 1.20 AC chr1 14827013 14827045 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 14831552 14831590 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 14831880 14831937 trf 8 7.6 8 81 15 59 42 19 36 1 1.62 AGAGCGCA chr1 14834390 14834433 trf 4 10.8 4 100 0 86 76 0 23 0 0.78 AAAG chr1 14834816 14834856 trf 5 7.6 5 89 10 62 80 20 0 0 0.72 AAACA chr1 14849378 14849403 trf 7 3.6 7 100 0 50 64 12 12 12 1.51 AAAATGC chr1 14852737 14852764 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 14861217 14861272 trf 12 4.6 12 79 4 58 0 54 0 45 0.99 CCTCCTCCTTCT chr1 14861217 14861265 trf 12 3.9 13 81 13 66 0 54 0 45 0.99 CCTCCTCCTTCTT chr1 14861818 14861868 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 14863932 14864055 trf 6 20.5 6 80 6 115 47 18 31 2 1.62 ACAGAG chr1 14866021 14866047 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 14878392 14878430 trf 8 4.8 8 81 12 51 10 7 42 39 1.69 TGTGTGCA chr1 14879496 14879544 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 14879545 14879581 trf 2 18.0 2 88 0 54 55 0 44 0 0.99 AG chr1 14879927 14879959 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 14882425 14882539 trf 3 38.0 3 74 3 68 0 39 0 58 1.10 TCT chr1 14889561 14889598 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TTTA chr1 14893557 14893604 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 14899604 14899703 trf 8 12.4 8 89 0 117 49 9 41 0 1.34 AGAGAGAG chr1 14901912 14901942 trf 2 15.0 2 92 0 51 46 0 50 3 1.18 GA chr1 14907910 14907935 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 14911561 14911624 trf 2 31.5 2 96 0 117 47 50 0 1 1.10 CA chr1 14913360 14913386 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 14916711 14916745 trf 12 2.8 12 90 0 50 35 0 8 55 1.31 ATGTATATATGT chr1 14919060 14919099 trf 1 39.0 1 100 0 78 100 0 0 0 0.00 A chr1 14928775 14928816 trf 12 3.6 12 80 6 50 7 7 34 51 1.58 TGTGTGTGTATC chr1 14928844 14928938 trf 2 46.5 2 91 2 143 0 44 5 50 1.24 TC chr1 14928937 14928988 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 14930091 14930140 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 14932801 14932832 trf 1 31.0 1 93 0 53 96 0 3 0 0.21 A chr1 14934539 14934584 trf 2 22.5 2 95 0 81 0 0 48 51 1.00 GT chr1 14935332 14935534 trf 12 17.1 12 82 10 139 0 37 0 61 1.00 TCCTTCCTTTCT chr1 14935332 14935514 trf 4 45.2 4 86 8 120 0 39 0 60 1.01 TCCT chr1 14935334 14935534 trf 8 24.4 8 86 5 157 0 37 0 62 1.00 CTTCCTTT chr1 14937517 14937636 trf 4 29.8 4 89 3 177 52 0 46 0 1.06 AAGG chr1 14945026 14945058 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 14949655 14949868 trf 10 20.3 10 86 6 228 50 38 9 1 1.44 ACACAGACAC chr1 14949655 14949868 trf 6 36.8 6 81 14 189 50 38 9 1 1.44 ACACAG chr1 14951383 14951417 trf 4 8.5 4 100 0 68 26 0 73 0 0.83 AGGG chr1 14958179 14958221 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 14960601 14960642 trf 12 3.5 12 93 3 66 92 0 0 7 0.38 AAAAAATAAAAA chr1 14960601 14960643 trf 1 42.0 1 85 0 57 92 0 0 7 0.37 A chr1 14980756 14980788 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 14983863 14983897 trf 1 34.0 1 100 0 68 100 0 0 0 0.00 A chr1 14997735 14997781 trf 2 24.0 2 82 8 60 47 2 2 47 1.26 AT chr1 15007459 15007493 trf 3 11.3 3 100 0 68 32 0 67 0 0.91 GAG chr1 15009961 15010003 trf 12 3.6 11 87 12 50 78 21 0 0 0.75 CAAAAAACAAA chr1 15009961 15009996 trf 4 9.2 4 87 12 56 77 22 0 0 0.78 CAAA chr1 15020049 15020082 trf 3 11.3 3 93 6 59 30 0 0 69 0.88 TTA chr1 15027144 15027170 trf 4 6.5 4 100 0 52 0 23 26 50 1.50 TGTC chr1 15027996 15028034 trf 3 12.7 3 100 0 76 34 34 31 0 1.58 CAG chr1 15034824 15034863 trf 4 9.8 4 100 0 78 0 74 0 25 0.82 CCTC chr1 15034874 15034899 trf 12 2.1 12 100 0 50 0 40 0 60 0.97 TCTCTCTCTCTT chr1 15039256 15039355 trf 4 25.0 4 85 2 137 46 0 28 25 1.53 GATA chr1 15040611 15040701 trf 4 22.8 4 95 2 164 25 26 0 47 1.52 ATCT chr1 15047918 15047946 trf 3 9.3 3 100 0 56 67 32 0 0 0.91 AAC chr1 15048759 15048790 trf 8 3.8 8 91 8 53 0 0 25 74 0.82 TTTTTGTG chr1 15055029 15055072 trf 2 21.5 2 85 0 59 51 44 4 0 1.22 AC chr1 15058758 15058884 trf 6 21.0 6 99 0 243 34 0 65 0 0.93 GAGGGA chr1 15064606 15064637 trf 8 3.9 8 100 0 62 35 25 25 12 1.92 CAGGATCA chr1 15069773 15069817 trf 4 11.0 4 100 0 88 50 0 50 0 1.00 AGGA chr1 15070798 15070825 trf 12 2.2 12 100 0 54 59 0 0 40 0.98 AATATAAATATT chr1 15072049 15072104 trf 10 5.5 10 78 8 58 38 0 12 49 1.41 TGTATATATA chr1 15072069 15072100 trf 2 15.5 2 93 0 53 45 0 3 51 1.17 TA chr1 15077810 15077840 trf 3 10.0 3 100 0 60 66 0 0 33 0.92 TAA chr1 15078477 15078507 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 15090372 15090403 trf 4 7.8 4 100 0 62 77 0 0 22 0.77 AAAT chr1 15090600 15090632 trf 12 2.8 12 95 4 57 93 0 6 0 0.34 AAAAGAAAAAAA chr1 15094696 15094761 trf 5 13.0 5 96 0 121 0 21 0 78 0.75 CTTTT chr1 15096738 15096770 trf 5 6.4 5 100 0 64 81 18 0 0 0.70 AAACA chr1 15102882 15102934 trf 10 5.2 10 73 0 50 53 36 1 7 1.41 ACACACACAA chr1 15103235 15103278 trf 2 21.5 2 95 0 77 48 48 2 0 1.14 AC chr1 15103734 15103830 trf 2 48.0 2 70 12 54 42 44 1 11 1.47 AC chr1 15103734 15103781 trf 10 4.7 10 79 10 60 42 46 0 10 1.38 ACACACACTC chr1 15103735 15103815 trf 8 9.9 8 74 12 74 40 46 0 13 1.44 CACACACT chr1 15108462 15108493 trf 4 7.5 4 92 7 53 48 0 0 51 1.00 TTAA chr1 15116779 15116823 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 15118873 15118908 trf 4 8.8 4 87 0 52 0 28 17 54 1.43 TCTG chr1 15118877 15118912 trf 8 4.4 8 92 0 52 0 31 14 54 1.40 TCTGTCTC chr1 15118910 15118970 trf 4 15.0 4 96 0 111 0 73 0 26 0.84 CTCC chr1 15121930 15121979 trf 4 12.2 4 95 0 62 42 0 32 24 1.55 ATAG chr1 15122949 15122980 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 15123091 15123143 trf 2 26.5 2 77 11 54 48 5 0 46 1.26 TA chr1 15125574 15125605 trf 2 15.5 2 100 0 62 0 48 0 51 1.00 TC chr1 15127410 15127743 trf 4 84.5 4 87 5 437 0 53 0 45 1.04 TCCT chr1 15129212 15129247 trf 11 3.2 11 100 0 70 0 0 34 65 0.93 TTTGTGTGTGT chr1 15130120 15130200 trf 2 40.0 2 92 0 133 1 2 47 48 1.23 GT chr1 15135347 15135380 trf 4 8.2 4 100 0 66 51 0 48 0 1.00 AAGG chr1 15135888 15135994 trf 2 53.5 2 75 1 79 43 7 5 43 1.56 AT chr1 15137039 15137089 trf 10 5.0 10 85 0 55 20 40 16 24 1.91 CACTACACTG chr1 15137039 15137080 trf 5 8.2 5 88 0 64 19 41 17 21 1.90 CACTG chr1 15139056 15139180 trf 4 31.2 4 90 1 151 0 25 5 68 1.16 TCTT chr1 15140280 15140329 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 15141361 15141411 trf 2 25.0 2 91 0 82 48 48 2 2 1.24 CA chr1 15141605 15141771 trf 3 55.0 3 92 1 215 0 59 0 40 0.98 CTC chr1 15141769 15141828 trf 3 19.7 3 100 0 118 0 33 0 66 0.92 TCT chr1 15146651 15146696 trf 9 5.0 9 100 0 90 0 22 44 33 1.53 TGGCCTGTG chr1 15147055 15147105 trf 4 12.8 4 95 4 93 0 22 0 78 0.76 TTTC chr1 15149196 15149239 trf 2 21.0 2 90 4 68 48 46 0 4 1.22 CA chr1 15149891 15149918 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 15153069 15153095 trf 3 8.7 3 100 0 52 69 30 0 0 0.89 AAC chr1 15164399 15164429 trf 8 3.6 8 91 8 51 60 10 0 30 1.30 TAAATCAA chr1 15165793 15165859 trf 2 33.0 2 100 0 132 0 50 0 50 1.00 TC chr1 15173588 15173636 trf 10 4.9 10 87 10 64 0 66 0 33 0.92 CTCTCCCTCC chr1 15173641 15173893 trf 12 22.8 11 82 11 143 0 45 1 53 1.11 CTCTCCTCTTT chr1 15173641 15173760 trf 12 10.2 12 91 4 181 0 38 0 60 1.03 CTCTCTCTCTTT chr1 15173651 15173760 trf 6 18.2 6 88 0 164 0 37 0 61 1.02 TCTTTC chr1 15173762 15173977 trf 5 42.6 5 82 9 204 0 59 0 38 1.10 TCCTC chr1 15173904 15173990 trf 5 16.8 5 79 12 68 1 72 0 26 0.92 CCCCT chr1 15177501 15177537 trf 4 8.5 4 93 6 54 0 0 22 77 0.76 TTGT chr1 15177542 15177572 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 15179445 15179471 trf 12 2.2 12 100 0 52 34 50 7 7 1.60 CATGCACACACC chr1 15180594 15180633 trf 2 19.5 2 94 0 69 2 48 0 48 1.15 TC chr1 15180632 15180661 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 15188771 15188799 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 15207539 15207582 trf 2 21.5 2 85 0 59 53 41 0 4 1.21 AC chr1 15207670 15207698 trf 8 3.5 8 100 0 56 50 39 0 10 1.37 ACACATAC chr1 15227547 15227593 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 15227618 15227658 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 15238980 15239032 trf 5 10.0 5 80 12 52 76 23 0 0 0.78 CAAAA chr1 15240298 15240334 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 AG chr1 15251723 15251780 trf 2 29.0 2 96 3 107 50 49 0 0 1.00 CA chr1 15265220 15265276 trf 7 8.7 7 83 13 68 0 0 12 87 0.54 GTTTTTT chr1 15265221 15265277 trf 12 4.8 12 85 10 71 0 0 12 87 0.54 TTTTTTTTGTTT chr1 15265221 15265274 trf 11 4.7 11 84 11 72 0 0 11 88 0.51 TTTTTTTTGTT chr1 15265221 15265276 trf 1 55.0 1 77 0 56 0 0 10 89 0.50 T chr1 15267287 15267398 trf 6 18.8 6 96 3 208 0 17 32 50 1.46 TCTGTG chr1 15267397 15267493 trf 4 24.0 4 84 4 77 0 48 6 44 1.27 TCTC chr1 15274267 15274307 trf 3 13.3 3 100 0 80 32 0 0 67 0.91 TAT chr1 15276621 15277182 trf 9 62.7 9 79 8 223 15 1 49 33 1.56 GATGGTGGT chr1 15276632 15276726 trf 3 31.3 3 91 0 152 3 0 61 35 1.12 TGG chr1 15276733 15277015 trf 3 94.3 3 80 3 120 22 3 41 32 1.70 TGA chr1 15277025 15277182 trf 3 52.7 3 88 1 235 5 0 61 33 1.18 GTG chr1 15277674 15277731 trf 2 28.5 2 100 0 114 50 49 0 0 1.00 AC chr1 15278557 15278603 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 15280229 15280392 trf 5 32.8 5 86 10 106 0 29 0 70 0.87 TTTTC chr1 15280350 15280391 trf 8 4.9 8 85 8 55 0 17 0 82 0.66 TTTTTTTC chr1 15280351 15280387 trf 4 8.8 4 87 6 54 0 19 0 80 0.71 TTTC chr1 15284482 15284527 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 15296103 15296226 trf 4 32.0 4 80 8 148 50 0 26 23 1.50 ATAG chr1 15301063 15301092 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 15301106 15301133 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 15301372 15301414 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 15302671 15302832 trf 12 13.4 13 90 7 76 47 0 52 0 1.00 GAAGAGGAAGGAG chr1 15302688 15302831 trf 6 23.3 6 94 3 234 48 0 51 0 1.00 AGGAGA chr1 15303036 15303218 trf 12 15.4 12 84 8 112 40 0 58 0 1.02 GGAGGAAGGGAA chr1 15303042 15303221 trf 8 22.2 8 85 5 128 40 0 59 0 1.02 AGGGAAGG chr1 15303044 15303180 trf 4 33.8 4 84 10 134 44 0 54 0 1.05 GGAA chr1 15303134 15303221 trf 4 21.8 4 92 0 147 28 0 71 0 0.87 GAGG chr1 15303218 15303268 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 15303380 15303405 trf 3 8.3 3 100 0 50 0 0 32 68 0.90 TGT chr1 15305755 15305846 trf 6 15.3 6 77 2 94 49 43 3 3 1.35 CACACA chr1 15305755 15305846 trf 4 23.0 4 79 2 94 49 43 3 3 1.35 CACA chr1 15305786 15305846 trf 2 30.0 2 91 0 93 50 46 1 1 1.21 CA chr1 15311063 15311111 trf 10 4.9 10 87 2 53 10 0 39 50 1.37 GTATGTGTGT chr1 15319192 15319223 trf 8 3.9 8 95 0 53 0 6 16 77 0.97 TTTGTTTC chr1 15320415 15320457 trf 9 4.7 9 83 16 52 80 2 16 0 0.81 AAAGAAAAG chr1 15326696 15326804 trf 6 18.5 6 77 9 62 42 1 41 13 1.55 AGAGAT chr1 15334317 15334351 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 15335334 15335387 trf 2 26.5 2 96 0 97 1 0 49 49 1.12 GT chr1 15337725 15337841 trf 4 28.8 4 89 1 97 0 34 0 65 0.93 TTTC chr1 15343358 15343391 trf 4 8.2 4 100 0 66 72 0 0 27 0.85 TAAA chr1 15344585 15344681 trf 4 24.2 4 91 2 140 22 1 53 22 1.53 GGTA chr1 15344670 15344781 trf 4 28.0 4 95 1 197 47 0 26 26 1.52 TAGA chr1 15349665 15349697 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 15352593 15352627 trf 10 3.0 12 83 16 54 17 35 23 23 1.95 CTGACCGATGCT chr1 15356861 15356910 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 15368485 15368558 trf 6 12.7 6 94 2 98 0 0 30 69 0.88 GTTTTG chr1 15369384 15369423 trf 2 19.5 2 94 0 69 0 2 48 48 1.15 TG chr1 15370452 15370488 trf 4 9.0 4 100 0 72 75 0 0 25 0.81 TAAA chr1 15372026 15372065 trf 5 7.6 5 85 2 51 2 0 20 76 0.90 TTTGT chr1 15379506 15379539 trf 2 16.5 2 93 0 57 51 45 3 0 1.16 AC chr1 15379799 15379839 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 GA chr1 15380564 15380594 trf 2 15.0 2 92 0 51 50 46 3 0 1.18 CA chr1 15385662 15385698 trf 2 18.0 2 94 0 63 2 0 47 50 1.15 TG chr1 15385697 15385729 trf 2 16.0 2 100 0 64 50 0 50 0 1.00 GA chr1 15393978 15394038 trf 4 15.5 4 83 13 81 48 1 26 23 1.60 AGAT chr1 15395194 15395225 trf 2 15.5 2 93 0 53 3 0 45 51 1.17 TG chr1 15395983 15396016 trf 12 2.8 12 100 0 66 6 6 0 87 0.65 TTTTTTTTTTCA chr1 15399512 15399797 trf 12 23.8 12 91 0 363 65 0 34 0 0.93 AGAAAGAAAGGA chr1 15411537 15411600 trf 2 32.0 2 90 3 92 49 0 50 0 1.00 GA chr1 15414690 15414717 trf 4 6.8 4 100 0 54 51 22 25 0 1.48 AGAC chr1 15424678 15424710 trf 5 6.4 5 100 0 64 18 0 0 81 0.70 TTTTA chr1 15427850 15427881 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 15433019 15433049 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 15439401 15439483 trf 8 10.0 8 80 15 60 50 14 34 1 1.51 AGAGACAG chr1 15439435 15439490 trf 4 14.2 4 84 7 78 47 23 29 0 1.52 AGAC chr1 15447692 15447740 trf 6 8.5 6 76 19 50 83 0 14 2 0.74 AAAAGA chr1 15448200 15448241 trf 2 20.5 2 94 0 73 2 0 48 48 1.14 GT chr1 15453073 15453114 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 15453076 15453134 trf 8 7.4 8 92 1 64 6 0 43 50 1.29 TGTGTGTA chr1 15453251 15453314 trf 2 31.5 2 96 0 117 1 0 47 50 1.10 TG chr1 15456560 15456616 trf 2 28.0 2 88 0 85 0 44 3 51 1.18 TC chr1 15469968 15470113 trf 3 47.7 3 81 2 128 34 0 38 26 1.57 GAT chr1 15470591 15470636 trf 4 11.2 4 95 0 81 51 22 0 26 1.49 ATAC chr1 15472062 15472113 trf 6 8.5 6 100 0 102 0 64 0 35 0.94 TCTCCC chr1 15472384 15472421 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 15487627 15487665 trf 3 12.7 3 94 0 67 31 2 0 65 1.06 TTA chr1 15491403 15491437 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 15499069 15499104 trf 3 11.7 3 100 0 70 0 0 31 68 0.90 TTG chr1 15500837 15501316 trf 3 162.3 3 78 10 407 0 57 0 41 1.08 TCC chr1 15506966 15507015 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 15512770 15512798 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 15516848 15516894 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 15517861 15517914 trf 6 8.8 6 86 13 74 0 0 15 84 0.61 TTTTTG chr1 15517861 15517928 trf 11 5.9 11 77 11 73 0 0 14 85 0.61 TTTTTTTTTTG chr1 15517861 15517931 trf 1 70.0 1 73 0 50 0 0 14 85 0.59 T chr1 15517862 15517932 trf 8 9.0 8 76 20 69 0 0 15 84 0.63 TTTTTTTG chr1 15531144 15531182 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 15536793 15536882 trf 3 30.0 3 97 2 171 67 0 32 0 0.91 AGA chr1 15536880 15536983 trf 3 34.3 3 100 0 206 33 0 66 0 0.92 GAG chr1 15537093 15537129 trf 3 12.0 3 100 0 72 66 33 0 0 0.92 CAA chr1 15538448 15538535 trf 2 44.0 2 97 2 167 0 0 50 49 1.00 GT chr1 15546589 15546618 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 15551477 15551526 trf 5 9.8 5 100 0 98 81 18 0 0 0.69 AAAAC chr1 15563533 15563591 trf 6 9.7 6 78 14 66 46 0 53 0 1.00 GAAGAG chr1 15567124 15567228 trf 5 20.8 5 95 0 190 57 0 42 0 0.98 AGAGA chr1 15567225 15567273 trf 5 9.6 5 100 0 96 20 0 79 0 0.74 GAGGG chr1 15569758 15569832 trf 12 6.2 12 96 0 139 1 43 32 22 1.62 CCTGCCGTGGTC chr1 15574995 15575033 trf 2 19.0 2 88 0 58 47 2 2 47 1.30 AT chr1 15577082 15577114 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 AT chr1 15579750 15579810 trf 2 30.0 2 100 0 120 50 50 0 0 1.00 AC chr1 15581446 15581517 trf 4 18.0 4 97 2 135 49 0 25 25 1.51 AGAT chr1 15594897 15594975 trf 2 39.0 2 81 0 75 0 38 8 52 1.33 TC chr1 15595039 15595172 trf 4 33.5 4 95 1 115 62 0 37 0 0.96 GAAA chr1 15595054 15595124 trf 2 35.5 2 94 2 124 51 0 48 0 1.00 AG chr1 15595918 15595959 trf 2 20.5 2 94 0 73 0 53 0 46 1.00 CT chr1 15595958 15595999 trf 2 20.5 2 89 0 64 46 48 2 2 1.28 CA chr1 15596878 15596904 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 15598804 15598833 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 15600832 15600871 trf 8 5.0 8 93 6 71 87 12 0 0 0.55 ACAAAAAA chr1 15601371 15601413 trf 2 22.0 2 90 9 70 0 50 0 50 1.00 CT chr1 15610149 15610176 trf 12 2.2 12 100 0 54 51 40 7 0 1.30 ACACACACACAG chr1 15611476 15611520 trf 3 14.7 3 90 0 61 59 0 6 34 1.24 ATA chr1 15611676 15611730 trf 3 18.3 3 92 3 92 0 1 31 66 1.02 TGT chr1 15621378 15621505 trf 4 31.8 4 91 0 191 48 26 1 22 1.59 ATAC chr1 15623744 15623799 trf 2 28.0 2 89 10 87 0 1 49 49 1.11 TG chr1 15623800 15623854 trf 2 27.0 2 100 0 108 50 0 0 50 1.00 TA chr1 15627770 15627816 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 15631823 15631881 trf 4 14.5 4 100 0 116 51 0 48 0 1.00 AAGG chr1 15634209 15634254 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 15635409 15635468 trf 2 29.5 2 100 0 118 0 49 0 50 1.00 TC chr1 15635506 15635535 trf 4 7.2 4 100 0 58 24 0 0 75 0.80 TATT chr1 15640144 15640191 trf 5 9.4 5 100 0 94 78 21 0 0 0.75 CAAAA chr1 15643251 15643282 trf 2 15.5 2 100 0 62 0 48 0 51 1.00 TC chr1 15644589 15644635 trf 5 9.0 5 97 2 83 0 2 19 78 0.86 TTTGT chr1 15645405 15645531 trf 5 25.2 5 97 0 225 38 0 61 0 0.96 GAGAG chr1 15646319 15646360 trf 2 20.5 2 100 0 82 51 0 0 48 1.00 AT chr1 15646515 15646566 trf 2 25.5 2 87 0 75 0 56 0 43 0.99 CT chr1 15646589 15646630 trf 2 20.5 2 94 0 73 0 2 48 48 1.14 GT chr1 15646993 15647019 trf 5 5.2 5 100 0 52 80 19 0 0 0.71 AAACA chr1 15647765 15647802 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 15649712 15649745 trf 6 5.3 6 96 3 57 15 84 0 0 0.61 CCCACC chr1 15651249 15651300 trf 4 13.2 4 87 8 79 0 25 52 21 1.47 GCGT chr1 15653634 15653674 trf 12 3.2 13 93 6 66 5 0 47 47 1.24 TGTAGTGTGTGTG chr1 15653638 15653680 trf 2 21.0 2 85 9 59 2 2 50 45 1.27 GT chr1 15655196 15655248 trf 4 13.0 4 100 0 104 50 0 50 0 1.00 AAGG chr1 15655661 15655687 trf 12 2.2 12 100 0 52 7 7 34 50 1.60 GTTCTGTTGGTA chr1 15657163 15657203 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 15664544 15664627 trf 12 6.4 13 83 10 100 39 8 6 45 1.59 TATATGTCATATA chr1 15664579 15664631 trf 2 26.0 2 81 14 63 44 3 1 50 1.31 AT chr1 15664630 15664660 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 15674096 15674143 trf 4 11.8 4 100 0 94 25 0 74 0 0.82 AGGG chr1 15675514 15675558 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 15675560 15675609 trf 4 12.2 4 100 0 98 24 0 51 24 1.49 GGAT chr1 15676861 15676886 trf 5 5.0 5 100 0 50 80 0 0 20 0.72 AAAAT chr1 15682160 15682193 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 15686894 15686930 trf 2 18.0 2 94 0 63 47 50 0 2 1.15 CA chr1 15687776 15687868 trf 5 18.4 5 100 0 184 41 0 58 0 0.98 AAGGG chr1 15700776 15700803 trf 2 13.5 2 100 0 54 51 0 48 0 1.00 AG chr1 15700801 15700909 trf 4 27.0 4 96 0 126 40 0 59 0 0.98 GAAG chr1 15700906 15701001 trf 4 23.8 4 95 0 172 76 0 23 0 0.78 AAGA chr1 15701353 15701411 trf 5 10.8 5 96 3 80 75 24 0 0 0.80 AAAAC chr1 15701355 15701409 trf 3 19.7 3 82 17 73 74 25 0 0 0.83 AAC chr1 15706236 15706469 trf 6 38.5 6 95 3 295 0 0 31 68 0.90 TTTTGG chr1 15706379 15706469 trf 7 13.1 7 95 4 166 0 0 28 71 0.87 TTTGGTT chr1 15716277 15716366 trf 4 22.5 4 90 6 128 50 3 24 21 1.64 ATAG chr1 15724212 15724244 trf 2 16.0 2 93 0 55 50 46 0 3 1.17 AC chr1 15725616 15725666 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 15730413 15730520 trf 4 26.8 4 94 0 169 71 0 27 0 0.92 AAAG chr1 15732976 15733021 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 15746755 15746833 trf 2 39.5 2 87 2 113 0 46 3 50 1.20 CT chr1 15746862 15746893 trf 4 7.8 4 100 0 62 0 0 48 51 1.00 TTGG chr1 15748040 15748153 trf 4 28.2 4 92 3 138 68 0 31 0 0.90 AGAA chr1 15748757 15748797 trf 4 9.5 4 84 10 53 70 5 0 25 1.08 AATA chr1 15749214 15749277 trf 2 31.5 2 96 0 117 0 0 47 52 1.00 TG chr1 15750254 15750300 trf 6 7.7 6 100 0 92 0 0 15 84 0.62 TTTTGT chr1 15751137 15751191 trf 2 27.0 2 96 0 99 50 48 0 1 1.11 CA chr1 15753283 15753328 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 15753329 15753384 trf 4 13.8 4 100 0 110 25 0 74 0 0.82 AGGG chr1 15753381 15753430 trf 4 12.2 4 100 0 98 51 0 48 0 1.00 AGGA chr1 15755528 15755557 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 15755906 15755931 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 15757785 15757821 trf 4 9.0 4 100 0 72 0 0 25 75 0.81 GTTT chr1 15759768 15759810 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 15759810 15759847 trf 4 9.2 4 100 0 74 75 0 0 24 0.80 AAAT chr1 15760871 15760922 trf 3 17.3 3 95 4 95 35 0 31 33 1.58 AGT chr1 15772968 15773113 trf 5 26.6 5 95 4 182 57 0 42 0 0.98 AAAGG chr1 15773193 15773265 trf 4 18.0 4 94 0 126 27 0 72 0 0.85 GGAG chr1 15781329 15781366 trf 10 3.7 10 100 0 74 37 32 18 10 1.86 ACCACTGAGA chr1 15784287 15784341 trf 4 13.5 4 96 0 90 46 24 3 25 1.69 ATAC chr1 15785656 15786067 trf 12 34.6 12 85 8 456 57 41 0 0 1.02 ACACACACACAA chr1 15785658 15786067 trf 10 41.5 10 84 6 487 57 41 0 0 1.02 ACACACACAA chr1 15786245 15786282 trf 11 3.2 12 85 11 51 81 0 0 18 0.70 AAATAAATAAAT chr1 15786245 15786282 trf 4 9.8 4 85 11 51 81 0 0 18 0.70 AAAT chr1 15786364 15786389 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 15788016 15788047 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 15788437 15788509 trf 4 18.0 4 100 0 144 50 0 50 0 1.00 GAAG chr1 15790583 15790610 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 15791057 15791082 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 15792510 15792542 trf 2 15.5 2 93 6 55 50 0 46 3 1.17 AG chr1 15792866 15792917 trf 4 12.8 4 78 0 57 21 1 27 49 1.60 TATG chr1 15801028 15801072 trf 12 3.7 12 78 0 52 34 2 15 47 1.58 GTATATATATAT chr1 15816670 15816732 trf 4 15.5 4 100 0 124 25 24 0 50 1.50 TATC chr1 15830776 15830810 trf 11 3.2 10 88 12 50 85 0 2 11 0.71 AAAAATAAAA chr1 15836872 15836898 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 15840255 15840291 trf 12 2.9 12 95 4 63 0 11 0 88 0.50 TTTCTTTTTTTT chr1 15843228 15843270 trf 4 10.8 4 84 5 59 0 0 21 78 0.75 TTTG chr1 15844428 15844479 trf 2 25.5 2 79 0 57 49 41 1 7 1.43 AC chr1 15844446 15844501 trf 4 13.2 4 84 7 65 49 30 1 18 1.58 ACAT chr1 15860148 15860225 trf 4 19.0 4 94 2 136 25 0 74 0 0.83 GAGG chr1 15869909 15870044 trf 4 33.8 4 91 5 202 71 0 28 0 0.87 AAAG chr1 15869920 15870123 trf 12 17.1 12 76 10 61 66 0 33 0 0.92 AAAGGAAAGGAA chr1 15870162 15870199 trf 4 9.0 4 88 5 56 72 0 24 2 0.97 AAGA chr1 15874913 15874965 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 15875363 15875432 trf 4 17.0 4 93 3 102 0 55 0 44 0.99 CTTC chr1 15875430 15875485 trf 2 27.5 2 100 0 110 0 49 0 50 1.00 TC chr1 15876585 15876624 trf 2 19.5 2 89 0 60 2 2 43 51 1.29 TG chr1 15879262 15879310 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 15884120 15884145 trf 12 2.1 12 100 0 50 0 8 44 48 1.32 GTGTGTGTGTTC chr1 15886367 15886410 trf 5 8.2 5 80 10 50 2 2 39 55 1.25 GTGTT chr1 15886378 15886403 trf 12 2.1 12 100 0 50 0 0 40 60 0.97 TGTTGTGTTGTG chr1 15890360 15890395 trf 9 3.9 9 88 0 52 68 22 8 0 1.16 AACAACAAG chr1 15890448 15890522 trf 2 37.0 2 94 0 130 0 47 2 50 1.15 TC chr1 15896473 15896518 trf 12 3.7 12 81 3 54 2 22 20 55 1.54 TTGCTTGTTTGC chr1 15900749 15900782 trf 4 8.2 4 100 0 66 48 24 0 27 1.51 TCAA chr1 15901737 15901780 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 15902964 15903016 trf 12 4.5 11 75 13 50 1 5 17 75 1.10 GTTTTTTGTTT chr1 15907704 15907982 trf 2 139.0 2 76 0 223 44 41 5 7 1.56 CA chr1 15908349 15908385 trf 12 3.0 12 83 0 54 52 0 47 0 1.00 AAAGAGGAAGAG chr1 15908582 15908627 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 15918403 15918525 trf 2 62.5 2 82 4 115 39 0 60 0 0.97 GA chr1 15920609 15920660 trf 4 12.0 4 84 12 66 72 27 0 0 0.85 CAAA chr1 15920975 15921018 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 15924208 15924290 trf 2 41.0 2 97 0 155 50 48 0 1 1.08 AC chr1 15926759 15926817 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 15927294 15927334 trf 2 20.0 2 94 0 71 50 47 2 0 1.14 AC chr1 15935176 15935251 trf 4 18.8 4 97 0 132 72 0 28 0 0.86 AGAA chr1 15936098 15936155 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 15938624 15938681 trf 2 28.5 2 96 0 105 49 49 1 0 1.11 AC chr1 15941200 15941250 trf 6 8.3 6 90 0 64 50 12 38 0 1.40 GACAGA chr1 15941572 15941636 trf 2 32.0 2 93 0 110 0 53 0 46 1.00 TC chr1 15948548 15948577 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 15959183 15959237 trf 2 27.0 2 96 0 90 50 3 0 46 1.19 AT chr1 15959998 15960030 trf 4 8.0 4 100 0 64 25 0 0 75 0.81 ATTT chr1 15962527 15962553 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 15964105 15964145 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 15964456 15964521 trf 3 21.7 3 100 0 130 0 33 0 66 0.92 TCT chr1 15964519 15964556 trf 3 12.3 3 100 0 74 0 64 0 35 0.94 TCC chr1 15964735 15964810 trf 3 25.0 3 88 0 114 28 0 38 33 1.57 GAT chr1 15964965 15965034 trf 2 34.5 2 100 0 138 50 0 49 0 1.00 AG chr1 15967104 15967150 trf 4 11.5 4 100 0 92 23 0 0 76 0.79 TTAT chr1 15974282 15974331 trf 2 24.5 2 95 0 89 51 0 0 48 1.00 TA chr1 15975799 15975826 trf 5 5.4 5 100 0 54 81 18 0 0 0.69 AAAAC chr1 15977698 15977736 trf 12 3.3 12 89 10 62 44 7 47 0 1.32 AGAGGCAGAGAG chr1 15977735 15977851 trf 5 23.2 5 100 0 232 39 0 60 0 0.97 GAAGG chr1 15977851 15977900 trf 3 16.3 3 100 0 98 32 0 67 0 0.91 GGA chr1 15985114 15985155 trf 2 21.0 2 95 5 75 0 0 51 48 1.00 GT chr1 15992928 15992977 trf 2 24.5 2 95 0 89 46 53 0 0 1.00 CA chr1 15995392 15995440 trf 4 12.0 4 95 0 87 75 2 0 22 0.91 AAAT chr1 15997601 15997639 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 15999514 15999598 trf 12 7.2 12 69 8 66 35 20 21 22 1.96 AGTCCCTGAAAT chr1 15999521 15999585 trf 11 5.6 11 72 7 56 39 18 23 18 1.93 GAAATAGACCG chr1 16005391 16005439 trf 2 24.0 2 95 0 87 0 47 0 52 1.00 TC chr1 16008153 16008214 trf 6 10.2 6 98 0 113 0 65 0 34 0.93 CTCTCC chr1 16010254 16010302 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 16010295 16010623 trf 6 54.3 6 81 9 129 44 1 51 2 1.25 AGAGGA chr1 16010299 16010361 trf 3 20.7 3 100 0 124 66 0 33 0 0.92 AGA chr1 16010359 16010615 trf 3 88.3 3 76 9 210 38 1 56 3 1.28 AGG chr1 16012192 16012239 trf 2 24.0 2 89 4 60 42 0 57 0 0.98 GA chr1 16015228 16015338 trf 8 13.6 8 82 13 120 1 0 18 80 0.81 TTTTGTTT chr1 16015238 16015338 trf 4 25.0 4 75 16 84 1 0 19 80 0.78 TTTG chr1 16025223 16025251 trf 4 7.0 4 100 0 56 50 0 50 0 1.00 GGAA chr1 16036577 16036681 trf 2 52.5 2 75 5 86 0 41 7 50 1.38 TC chr1 16038148 16038195 trf 2 23.5 2 95 0 85 48 48 0 2 1.13 CA chr1 16040867 16040911 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 16043140 16043229 trf 12 6.5 15 87 10 58 48 0 51 0 1.00 AGGAAGGAGAGAGAG chr1 16043173 16043230 trf 4 14.2 4 100 0 114 50 0 49 0 1.00 AGGA chr1 16044922 16044986 trf 2 32.0 2 96 0 119 0 1 48 50 1.10 GT chr1 16054885 16054937 trf 2 26.0 2 96 0 95 51 0 48 0 1.00 AG chr1 16054947 16054984 trf 4 9.2 4 100 0 74 27 0 72 0 0.84 AGGG chr1 16054982 16055136 trf 4 37.0 4 88 6 218 71 0 28 0 0.86 GAAA chr1 16055948 16055993 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 16060708 16060866 trf 4 39.2 4 92 3 192 67 0 32 0 0.91 AAAG chr1 16060730 16060783 trf 2 26.5 2 96 0 97 52 0 47 0 1.00 AG chr1 16063924 16063990 trf 8 8.2 8 84 0 78 0 40 7 51 1.30 TCTCTCTC chr1 16063924 16063990 trf 6 11.0 6 85 0 78 0 40 7 51 1.30 TCTCTC chr1 16063987 16064017 trf 4 7.2 4 92 7 51 0 76 0 23 0.78 CTCC chr1 16077474 16077506 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 16077660 16077693 trf 12 2.5 13 85 14 50 0 6 21 72 1.05 TTTGCTTTGTTTG chr1 16078384 16078441 trf 5 11.4 5 92 0 87 80 5 0 14 0.87 AAAAT chr1 16079664 16079709 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 16082415 16082513 trf 3 32.0 3 93 4 169 0 33 0 66 0.92 CTT chr1 16086005 16086037 trf 4 8.2 4 93 6 57 0 0 25 75 0.81 GTTT chr1 16086888 16086923 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 16089755 16090209 trf 2 229.5 2 91 2 747 3 0 48 48 1.17 GT chr1 16093252 16093284 trf 10 3.2 10 100 0 64 9 40 50 0 1.35 GCCGGGGCCA chr1 16096447 16096473 trf 4 6.5 4 100 0 52 53 46 0 0 1.00 AACC chr1 16096540 16096577 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 16097118 16097144 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 16104601 16104627 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 16111378 16111509 trf 11 11.6 12 77 10 125 50 44 0 4 1.28 CACACACACACA chr1 16111378 16111509 trf 2 69.5 2 77 11 125 50 44 0 4 1.28 CA chr1 16115800 16115842 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 CT chr1 16118450 16118493 trf 4 10.8 4 94 0 77 25 0 72 2 0.97 AGGG chr1 16118491 16118519 trf 4 7.0 4 100 0 56 0 0 50 50 1.00 GGTT chr1 16134469 16134608 trf 2 68.5 2 79 2 134 5 4 40 49 1.46 TG chr1 16147383 16147441 trf 2 29.5 2 85 3 82 50 44 5 0 1.24 AC chr1 16147612 16147665 trf 4 13.2 4 91 0 88 47 24 1 26 1.62 CATA chr1 16147952 16148087 trf 4 33.5 4 96 1 252 0 26 0 73 0.84 CTTT chr1 16150316 16150345 trf 4 7.2 4 100 0 58 48 27 0 24 1.51 CATA chr1 16151639 16151952 trf 2 162.5 2 74 7 218 46 43 0 9 1.38 AC chr1 16151990 16152032 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 CT chr1 16152378 16152451 trf 5 14.8 5 97 2 139 17 0 0 82 0.68 TTTTA chr1 16153588 16153635 trf 4 11.2 4 86 8 58 31 0 68 0 0.90 GGGA chr1 16153598 16153650 trf 4 13.0 4 95 0 59 40 0 59 0 0.97 GAGA chr1 16154457 16154506 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 16160003 16160040 trf 4 9.2 4 100 0 74 51 24 0 24 1.49 ATAC chr1 16160037 16160062 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 16173538 16173577 trf 5 7.8 5 97 0 60 66 20 12 0 1.24 CAAAG chr1 16173792 16173834 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 16174697 16174753 trf 2 28.0 2 88 0 76 42 50 7 0 1.30 AC chr1 16174981 16175046 trf 4 16.2 4 100 0 130 24 24 0 50 1.49 TCTA chr1 16176540 16176567 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 16177266 16177293 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 16177472 16177511 trf 12 3.1 12 82 13 51 17 0 41 41 1.50 GTATGAGTGTGT chr1 16180727 16180781 trf 5 10.8 5 100 0 108 61 38 0 0 0.96 AAACC chr1 16180895 16180920 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 16186524 16186571 trf 2 23.5 2 100 0 94 0 51 0 48 1.00 CT chr1 16192871 16192904 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 16195455 16195493 trf 2 19.0 2 94 0 67 52 47 0 0 1.00 AC chr1 16195755 16195793 trf 7 5.6 7 87 6 60 84 13 0 2 0.73 AAACAAA chr1 16197964 16197992 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 16200826 16200869 trf 3 15.7 3 90 9 58 0 0 25 74 0.82 TTG chr1 16201084 16201134 trf 2 25.0 2 95 0 91 0 2 48 50 1.12 TG chr1 16203796 16203836 trf 7 6.0 7 85 8 57 0 0 12 87 0.54 TTTTGTT chr1 16204610 16204657 trf 6 8.2 6 76 9 53 76 17 2 4 1.04 CAAAAA chr1 16204756 16204810 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 16207473 16207520 trf 2 23.5 2 84 0 58 6 0 40 53 1.27 TG chr1 16212374 16212424 trf 2 25.0 2 91 0 82 2 0 46 52 1.12 GT chr1 16215445 16215484 trf 2 19.5 2 94 0 69 0 0 46 53 1.00 TG chr1 16217749 16217793 trf 3 14.3 3 95 4 79 65 34 0 0 0.93 AAC chr1 16219848 16219894 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 16222386 16222571 trf 4 44.8 4 86 6 111 55 0 43 1 1.07 AAGG chr1 16223871 16223905 trf 5 6.8 5 93 0 59 0 2 17 79 0.86 TTTTG chr1 16227059 16227118 trf 2 29.5 2 92 0 100 3 0 47 49 1.18 TG chr1 16230555 16230640 trf 3 28.7 3 97 2 163 67 0 32 0 0.91 AGA chr1 16237156 16237235 trf 6 13.2 6 84 0 95 7 0 46 45 1.31 TGTGTG chr1 16237156 16237235 trf 4 19.8 4 84 0 95 7 0 46 45 1.31 TGTG chr1 16237156 16237235 trf 10 8.1 10 82 10 74 7 0 46 45 1.31 TGTGTGAGTG chr1 16237569 16237600 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 16238181 16238241 trf 4 15.0 4 89 0 93 46 50 1 1 1.21 ACCA chr1 16239758 16239829 trf 3 23.7 3 79 0 52 0 54 0 45 0.99 CTC chr1 16240055 16240116 trf 2 30.5 2 100 0 122 0 49 0 50 1.00 TC chr1 16241441 16241472 trf 4 7.8 4 100 0 62 51 0 25 22 1.48 AGAT chr1 16241469 16241500 trf 4 7.8 4 100 0 62 51 22 25 0 1.48 AGAC chr1 16248075 16248114 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 16249640 16249677 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 16250377 16250418 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 16250950 16251231 trf 3 94.0 3 79 4 282 0 41 0 57 1.01 TTC chr1 16250962 16251263 trf 12 25.4 12 78 13 82 0 44 0 54 1.02 TCTTCTTCCTCC chr1 16251106 16251282 trf 6 29.3 6 79 5 61 0 53 0 45 1.04 CTCCTC chr1 16254286 16254395 trf 2 54.5 2 88 0 164 49 44 0 4 1.29 AC chr1 16255265 16255309 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 16255308 16255336 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 16257239 16257283 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 16259542 16259675 trf 3 44.3 3 83 0 158 1 58 0 39 1.07 TCC chr1 16262464 16262526 trf 2 31.0 2 96 0 115 0 48 0 51 1.00 TC chr1 16262525 16262558 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 16263476 16263568 trf 4 22.8 4 95 2 166 0 47 0 52 1.00 TTCC chr1 16268322 16268352 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 16268351 16268392 trf 2 20.5 2 100 0 82 48 0 51 0 1.00 GA chr1 16268395 16268426 trf 9 3.6 9 95 4 55 19 0 80 0 0.71 GGGGAGGGA chr1 16273371 16273441 trf 6 11.7 6 85 0 59 50 10 40 0 1.36 GAGAGA chr1 16273380 16273421 trf 10 3.9 10 81 12 55 51 14 34 0 1.43 AGAGACAGAC chr1 16275397 16275430 trf 2 16.5 2 93 0 57 0 51 3 45 1.16 CT chr1 16281505 16281557 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 16287228 16287370 trf 7 20.7 7 95 4 263 72 27 0 0 0.85 AAAAACC chr1 16287365 16287407 trf 1 42.0 1 100 0 84 100 0 0 0 0.00 A chr1 16290000 16290081 trf 4 20.8 4 85 14 116 72 0 27 0 0.84 AAAG chr1 16290711 16290736 trf 9 2.8 9 100 0 50 52 24 0 24 1.48 TTCACAAAA chr1 16294896 16294928 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 16298497 16298529 trf 6 5.2 6 92 7 55 81 18 0 0 0.70 CAAAAA chr1 16308004 16308053 trf 10 4.6 10 82 9 62 48 2 8 40 1.44 TATAAGTATA chr1 16310490 16310556 trf 5 14.0 5 79 20 72 81 18 0 0 0.68 CAAAA chr1 16317018 16317073 trf 4 13.8 4 100 0 110 76 0 23 0 0.79 AAAG chr1 16320201 16320264 trf 12 5.2 12 84 5 56 0 38 0 61 0.96 TTTCTTTCTCTC chr1 16320207 16320250 trf 2 21.5 2 95 0 77 0 46 0 53 1.00 TC chr1 16321371 16321443 trf 2 36.0 2 100 0 144 0 50 0 50 1.00 TC chr1 16328089 16328115 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 16336732 16336804 trf 8 9.0 8 69 6 56 41 33 5 19 1.75 CATACACA chr1 16340662 16340708 trf 8 5.2 9 77 12 51 0 2 10 86 0.64 TTTTTGTTT chr1 16349204 16349271 trf 4 16.8 4 87 0 98 68 5 25 0 1.12 AGAA chr1 16352658 16352697 trf 2 19.5 2 94 0 69 2 0 46 51 1.14 TG chr1 16359188 16359301 trf 4 27.0 4 91 5 131 76 1 22 0 0.88 GAAA chr1 16365541 16365590 trf 8 6.4 8 88 9 66 14 0 34 51 1.43 TGTGTGTA chr1 16365545 16365592 trf 4 12.2 4 84 8 53 17 0 31 51 1.46 TGTA chr1 16366030 16366064 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 16367603 16367665 trf 2 31.0 2 93 0 106 48 48 1 1 1.21 AC chr1 16378196 16378227 trf 8 3.9 8 91 0 53 25 35 25 12 1.92 CCCAGGAT chr1 16400245 16400303 trf 2 29.0 2 96 0 107 1 0 48 50 1.11 GT chr1 16404842 16404885 trf 12 3.9 12 77 22 58 55 18 0 25 1.42 ATACATACATAA chr1 16404842 16404885 trf 4 10.8 4 79 0 50 55 18 0 25 1.42 ATAC chr1 16405089 16405114 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 ATAA chr1 16405268 16405298 trf 4 7.5 4 100 0 60 53 0 0 46 1.00 AATT chr1 16409693 16409728 trf 4 8.5 4 96 3 61 77 22 0 0 0.78 AAAC chr1 16411293 16411324 trf 5 6.2 5 92 0 53 61 35 0 3 1.12 AACCA chr1 16413170 16413199 trf 11 2.7 11 94 5 51 82 17 0 0 0.66 AAAACAAAAAC chr1 16414273 16414300 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 16414486 16414511 trf 12 2.1 12 100 0 50 92 8 0 0 0.40 AAAAAAAAAAAC chr1 16419054 16419086 trf 4 8.0 4 100 0 64 75 25 0 0 0.81 AAAC chr1 16437642 16437674 trf 3 10.7 3 100 0 64 34 0 65 0 0.93 GAG chr1 16437672 16437707 trf 3 11.7 3 93 0 61 37 31 31 0 1.58 GAC chr1 16444100 16444137 trf 12 3.0 13 88 11 60 0 0 24 75 0.80 GTTTTGTTTGTTT chr1 16444102 16444129 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 16444195 16444221 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 16462717 16462935 trf 10 21.8 10 85 0 229 9 0 39 50 1.39 GTGTGTGTGT chr1 16462717 16462935 trf 8 27.2 8 83 0 229 9 0 39 50 1.39 GTGTGTGT chr1 16463256 16463294 trf 2 19.0 2 94 0 67 52 47 0 0 1.00 AC chr1 16467728 16467787 trf 4 15.2 4 89 7 95 50 25 0 23 1.49 ATAC chr1 16467784 16467829 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 16482156 16482182 trf 7 3.7 7 100 0 52 88 0 0 11 0.52 AAAAAAT chr1 16484296 16484321 trf 4 6.2 4 100 0 50 76 0 24 0 0.80 AAAG chr1 16484335 16484391 trf 4 14.0 4 100 0 112 25 0 75 0 0.81 GAGG chr1 16484388 16484446 trf 4 14.5 4 100 0 116 50 0 50 0 1.00 AGGA chr1 16485405 16485436 trf 8 3.9 8 91 0 53 32 0 16 51 1.44 TATGTATA chr1 16485452 16485502 trf 4 12.5 4 100 0 100 50 0 26 24 1.50 GATA chr1 16487218 16487290 trf 4 18.0 4 100 0 144 50 0 25 25 1.50 TAGA chr1 16489944 16489993 trf 2 24.5 2 95 0 89 51 2 0 46 1.12 AT chr1 16490627 16490666 trf 11 3.5 11 83 16 53 58 0 2 38 1.12 TAAAATATTTA chr1 16496611 16496670 trf 3 19.7 3 100 0 118 0 32 33 33 1.58 TGC chr1 16498543 16498608 trf 6 9.8 6 90 9 76 20 61 15 3 1.47 CCAGCC chr1 16501361 16501386 trf 12 2.1 12 100 0 50 40 24 16 20 1.91 TACAGTCAGACA chr1 16501972 16502040 trf 2 34.0 2 93 0 118 0 52 0 47 1.00 TC chr1 16503430 16504016 trf 2 298.5 2 78 4 485 39 48 7 3 1.50 AC chr1 16506637 16506678 trf 8 5.2 8 85 8 50 90 7 2 0 0.54 AAAAACAA chr1 16506676 16506718 trf 8 5.4 8 91 2 50 61 0 38 0 0.96 AAGAAAGG chr1 16506682 16506737 trf 12 4.6 12 81 0 56 60 0 40 0 0.97 GAAGAAAGGAAG chr1 16506690 16506730 trf 8 5.0 8 87 9 55 52 0 47 0 1.00 GAAGGAAG chr1 16508949 16508982 trf 4 8.2 4 100 0 66 72 0 0 27 0.85 TAAA chr1 16511147 16511177 trf 4 7.5 4 92 0 51 56 0 43 0 0.99 AAGG chr1 16511202 16511231 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 16512489 16512553 trf 2 32.0 2 100 0 128 50 0 50 0 1.00 GA chr1 16512552 16512639 trf 6 14.5 6 95 0 156 81 0 18 0 0.69 AAAAGA chr1 16516289 16516697 trf 2 204.0 2 75 0 249 40 44 9 5 1.61 CA chr1 16519372 16519723 trf 2 177.5 2 82 3 334 0 43 8 47 1.36 CT chr1 16521381 16521413 trf 4 8.0 4 92 0 55 0 3 25 71 1.00 GTTT chr1 16531647 16531698 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 16532248 16532287 trf 5 8.0 5 94 5 71 0 0 17 82 0.68 GTTTT chr1 16535220 16535272 trf 4 13.0 4 87 0 59 65 0 7 26 1.20 AATA chr1 16537419 16537467 trf 5 9.8 5 78 13 55 0 0 37 62 0.95 GTTTG chr1 16538109 16538151 trf 4 10.5 4 100 0 84 73 0 0 26 0.83 ATAA chr1 16542692 16542767 trf 6 12.5 6 97 0 105 50 6 42 0 1.28 AGAGAG chr1 16544121 16544161 trf 7 5.7 7 100 0 80 12 75 0 12 1.06 CCCCCAT chr1 16546495 16546520 trf 3 8.3 3 100 0 50 36 32 0 32 1.58 ACT chr1 16546518 16546548 trf 3 10.0 3 100 0 60 66 0 0 33 0.92 TAA chr1 16549525 16549577 trf 3 17.3 3 95 0 95 36 0 63 0 0.95 AGG chr1 16549575 16549644 trf 3 23.0 3 100 0 138 66 0 33 0 0.92 GAA chr1 16550994 16551068 trf 1 74.0 1 75 0 67 0 6 5 87 0.65 T chr1 16551948 16551973 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 16554432 16554505 trf 5 14.6 5 98 0 128 57 0 42 0 0.98 AGAAG chr1 16554495 16554584 trf 5 17.8 5 98 0 160 22 0 77 0 0.77 GGAGG chr1 16559177 16559203 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 16564022 16564052 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 16567655 16567698 trf 9 4.8 9 83 11 61 83 16 0 0 0.64 AAAAAACAA chr1 16567937 16567964 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 16568113 16568155 trf 2 21.0 2 90 0 66 47 2 2 47 1.28 TA chr1 16572793 16572819 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 16575496 16575546 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 16576449 16576485 trf 7 5.1 7 87 12 56 16 0 83 0 0.65 GGGGAGG chr1 16576454 16576505 trf 6 8.0 6 76 20 50 19 0 78 1 0.85 GGGAGG chr1 16579527 16579576 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 16583690 16583729 trf 12 3.2 12 85 0 51 12 7 35 43 1.72 TGTGTGTGCATA chr1 16589868 16589915 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 16598437 16598465 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 16602604 16602643 trf 2 19.5 2 100 0 78 0 51 0 48 1.00 CT chr1 16608869 16608898 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 16609972 16610009 trf 8 4.8 8 93 3 58 89 10 0 0 0.49 AAAAAACA chr1 16612239 16612273 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 16615505 16615532 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 16619997 16620022 trf 7 3.6 7 100 0 50 44 12 0 44 1.41 TTAATAC chr1 16626599 16626629 trf 4 7.8 4 92 7 53 0 0 20 80 0.72 TTTG chr1 16627684 16627716 trf 1 32.0 1 93 0 55 96 0 3 0 0.20 A chr1 16628641 16628741 trf 10 10.0 10 91 0 146 0 44 0 56 0.99 TCTCTCTCTC chr1 16628641 16628741 trf 6 16.7 6 91 0 146 0 44 0 56 0.99 TCTCTC chr1 16628641 16628741 trf 4 25.0 4 91 0 146 0 44 0 56 0.99 TCTC chr1 16634671 16634759 trf 4 22.0 4 97 0 86 38 0 61 0 0.96 AAGG chr1 16638217 16638260 trf 4 10.8 4 100 0 86 25 0 74 0 0.82 GAGG chr1 16638685 16638724 trf 4 9.8 4 100 0 78 51 23 0 25 1.49 ATAC chr1 16638925 16638970 trf 5 9.0 5 100 0 90 60 40 0 0 0.97 AAACC chr1 16641372 16641418 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 TG chr1 16645562 16645605 trf 2 21.5 2 100 0 86 0 51 0 48 1.00 CT chr1 16658338 16658414 trf 6 13.5 6 77 16 65 0 5 10 84 0.77 TTTGTT chr1 16658338 16658414 trf 11 6.8 11 82 5 73 0 5 10 84 0.77 TTTGTTTTTGT chr1 16668481 16668531 trf 11 4.5 11 85 5 55 50 2 2 46 1.24 TAATATATTAA chr1 16668504 16668529 trf 12 2.1 12 100 0 50 52 0 0 48 1.00 AATATATTTATA chr1 16672965 16672995 trf 4 7.5 4 92 0 51 46 23 3 26 1.68 ATAC chr1 16673905 16674010 trf 5 20.8 5 95 1 183 0 77 0 22 0.78 CCCTC chr1 16673998 16674066 trf 7 10.0 7 92 4 104 0 60 0 39 0.97 TCCCCTT chr1 16674809 16674834 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TGTC chr1 16683244 16683284 trf 11 3.9 11 75 18 50 0 0 12 87 0.54 TTGTTTTTTTT chr1 16685316 16685384 trf 11 6.5 11 81 11 81 36 35 0 27 1.58 CATCATCACAT chr1 16685316 16685392 trf 3 27.7 3 76 17 76 36 35 0 27 1.57 CAT chr1 16685829 16685921 trf 3 30.7 3 100 0 184 0 32 0 67 0.91 TTC chr1 16690055 16690102 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 16692593 16692629 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 16693989 16694045 trf 2 28.0 2 90 0 85 51 3 44 0 1.18 AG chr1 16699888 16699942 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 AC chr1 16708151 16708204 trf 4 13.2 4 100 0 106 0 49 0 50 1.00 TTCC chr1 16708201 16708250 trf 4 12.2 4 91 0 80 0 71 0 28 0.86 CCTC chr1 16708256 16708379 trf 12 10.4 12 84 3 142 0 38 12 49 1.40 TCTCTGTCTCTC chr1 16708256 16708386 trf 6 21.7 6 87 0 107 0 38 12 49 1.41 TCTCTC chr1 16708850 16708888 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 16709549 16709580 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 16709773 16710240 trf 9 50.6 9 62 11 131 0 55 11 32 1.38 CTCCTCCTC chr1 16710855 16710928 trf 3 23.0 3 81 10 56 0 60 8 31 1.26 CCT chr1 16714108 16714253 trf 3 47.0 3 78 9 87 0 58 8 32 1.29 CCT chr1 16722062 16722101 trf 1 39.0 1 94 0 69 0 2 0 97 0.17 T chr1 16722919 16722966 trf 2 23.5 2 86 0 67 2 4 44 48 1.34 TG chr1 16723164 16723214 trf 12 4.2 12 81 0 55 50 14 32 4 1.61 AGAGAGACAGAC chr1 16727039 16727089 trf 2 25.5 2 85 4 66 0 42 0 58 0.98 TC chr1 16727045 16727162 trf 7 15.9 7 92 4 99 0 38 0 61 0.96 TCTTTCT chr1 16727155 16727232 trf 5 15.2 5 95 2 136 0 37 0 62 0.96 TCCTT chr1 16735732 16735768 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 16735767 16735797 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 16739112 16739138 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 16746992 16747029 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 16747536 16747575 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 16750709 16751149 trf 6 71.3 6 84 8 234 0 49 0 50 1.00 CTTCTC chr1 16752037 16752063 trf 4 6.5 4 100 0 52 0 50 0 50 1.00 CTTC chr1 16752060 16752096 trf 4 9.0 4 100 0 72 0 75 0 25 0.81 CCTC chr1 16752093 16752137 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 16755256 16755319 trf 4 15.8 4 93 0 108 0 28 0 71 0.86 TTCT chr1 16757910 16757953 trf 8 5.4 8 78 10 52 11 76 0 11 1.02 CCCCCACT chr1 16758779 16758804 trf 11 2.3 11 100 0 50 76 0 24 0 0.80 AAAAGGAAAAG chr1 16760219 16760268 trf 2 24.5 2 100 0 98 0 51 0 48 1.00 CT chr1 16762247 16762359 trf 8 15.5 8 73 20 68 55 12 31 0 1.43 GAGCAAGA chr1 16766973 16767013 trf 4 10.0 4 100 0 80 25 0 0 75 0.81 TTAT chr1 16773011 16773036 trf 7 3.6 7 100 0 50 64 12 12 12 1.51 AAAATGC chr1 16776013 16776052 trf 12 3.2 12 92 3 60 2 10 15 71 1.23 TTTTGCTTTTGT chr1 16783100 16783132 trf 2 16.0 2 100 0 64 50 0 50 0 1.00 GA chr1 16783603 16784062 trf 8 54.9 8 67 14 70 44 37 6 11 1.67 ATACACAC chr1 16783655 16783701 trf 10 4.8 10 78 7 51 43 43 2 10 1.51 CACACACATC chr1 16783673 16783754 trf 2 40.5 2 72 4 65 44 43 4 7 1.54 CA chr1 16783986 16784062 trf 2 38.5 2 84 2 100 51 42 2 3 1.34 AC chr1 16789609 16789733 trf 4 30.0 4 87 6 167 0 31 0 68 0.90 CTTT chr1 16793446 16793508 trf 12 4.9 12 75 11 52 43 9 3 43 1.53 TATATATACATT chr1 16803315 16803346 trf 11 2.9 11 95 4 55 29 9 22 38 1.86 TAGTACTATGG chr1 16803315 16803347 trf 10 3.1 10 91 8 55 28 9 21 40 1.84 TAGTACTATG chr1 16806807 16806855 trf 4 11.8 4 87 12 71 0 0 20 79 0.74 TTTG chr1 16808657 16808737 trf 4 21.2 4 75 21 75 47 0 26 26 1.52 ATAG chr1 16808786 16808842 trf 4 13.5 4 77 7 58 23 1 7 67 1.24 TATT chr1 16809193 16809259 trf 3 22.0 3 90 0 105 33 62 1 3 1.20 ACC chr1 16810510 16810571 trf 2 30.5 2 89 0 95 3 0 44 52 1.17 TG chr1 16814579 16814616 trf 4 9.2 4 93 0 65 24 0 2 72 0.97 TATT chr1 16815379 16815410 trf 4 7.8 4 100 0 62 74 0 0 25 0.82 TAAA chr1 16817002 16817033 trf 12 2.6 12 89 0 53 80 19 0 0 0.71 AAAAAACAAACA chr1 16817268 16817315 trf 2 23.5 2 95 0 85 51 46 0 2 1.13 AC chr1 16826825 16826864 trf 3 13.0 3 84 10 53 38 0 61 0 0.96 GAG chr1 16836400 16836429 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 AAAC chr1 16842694 16842719 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 16845736 16845967 trf 12 19.2 12 93 0 255 0 42 0 57 0.98 CCTTTCTTCCTT chr1 16845789 16845967 trf 4 44.2 4 97 1 302 0 47 0 52 1.00 CTTC chr1 16847901 16847957 trf 2 28.5 2 96 3 105 51 0 48 0 1.00 AG chr1 16848224 16848265 trf 8 5.4 8 80 11 50 46 14 36 2 1.58 GAGCAAGA chr1 16848867 16848930 trf 5 12.4 5 98 1 117 61 38 0 0 0.96 AAACC chr1 16851801 16851851 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 16852067 16852108 trf 1 41.0 1 100 0 82 0 0 0 100 0.00 T chr1 16854624 16854683 trf 5 11.4 5 89 7 73 76 0 23 0 0.79 AAGAA chr1 16855256 16855294 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 16856578 16856651 trf 4 18.2 4 97 0 137 52 0 23 24 1.48 AAGT chr1 16858112 16858139 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 16860012 16860049 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 16864027 16864088 trf 5 11.8 5 94 5 72 0 0 26 73 0.83 TTTGT chr1 16865581 16865621 trf 1 40.0 1 100 0 80 0 0 0 100 0.00 T chr1 16865800 16865831 trf 2 15.5 2 93 0 53 0 45 0 54 0.99 TC chr1 16882414 16882440 trf 12 2.2 12 100 0 52 30 15 15 38 1.88 TTTAGGCTAAAC chr1 16885940 16885978 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 16885975 16886005 trf 4 7.5 4 100 0 60 0 23 26 50 1.50 TGTC chr1 16900843 16900926 trf 5 16.6 5 92 0 139 3 0 15 80 0.84 TTTTG chr1 16904672 16904731 trf 4 14.8 4 96 0 109 0 72 0 27 0.84 CCTC chr1 16908577 16908606 trf 12 2.3 13 94 5 51 10 17 0 72 1.11 TCTTTAATTTCTT chr1 16911402 16911454 trf 2 26.5 2 84 11 72 46 0 51 1 1.12 GA chr1 16911687 16911737 trf 4 12.5 4 100 0 100 0 26 0 74 0.83 TCTT chr1 16911734 16911776 trf 4 10.5 4 100 0 84 0 47 0 52 1.00 TTCC chr1 16917200 16917227 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 16918922 16918997 trf 5 14.8 5 84 13 100 0 0 20 80 0.72 TTTTG chr1 16934005 16934217 trf 3 71.3 3 92 3 313 0 37 0 62 0.96 TCT chr1 16936495 16936537 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 16942757 16942798 trf 7 5.9 7 100 0 82 12 87 0 0 0.53 CCCCCCA chr1 16945937 16946016 trf 2 39.5 2 94 0 140 53 0 46 0 1.00 AG chr1 16958623 16958666 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 16965638 16965672 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 16966505 16966547 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 16969789 16969815 trf 4 6.5 4 100 0 52 26 0 23 50 1.50 TATG chr1 16976233 16976266 trf 4 8.2 4 100 0 66 0 24 24 51 1.48 TGTC chr1 16978634 16978693 trf 3 19.7 3 92 0 100 66 30 0 3 1.08 AAC chr1 16982729 16982851 trf 12 10.2 12 88 0 100 7 1 41 49 1.40 GTGTGTATGTAT chr1 16982729 16982831 trf 2 51.0 2 86 0 141 3 1 45 49 1.32 GT chr1 16982780 16982853 trf 8 9.1 8 89 0 56 12 1 35 50 1.48 TGTATGTA chr1 16982828 16982853 trf 4 6.2 4 100 0 50 24 0 24 52 1.48 TGTA chr1 16990668 16990708 trf 4 10.0 4 100 0 80 25 0 0 75 0.81 ATTT chr1 16991563 16991924 trf 10 33.9 10 85 8 183 47 0 52 0 1.02 AGAGAAGAGA chr1 16991563 16991913 trf 8 39.3 10 70 23 266 46 0 52 0 1.02 AGAGAGAGAG chr1 16993541 16993590 trf 5 9.8 5 95 0 89 61 36 0 2 1.08 AAACC chr1 16993812 16993890 trf 4 19.2 4 86 2 111 50 46 2 1 1.23 AACC chr1 16995379 16995414 trf 3 11.7 3 93 0 61 71 28 0 0 0.86 AAC chr1 16996542 16996590 trf 2 24.0 2 86 0 69 47 0 6 45 1.27 TA chr1 17001726 17001823 trf 2 48.5 2 97 0 185 50 48 0 1 1.07 AC chr1 17005682 17005722 trf 6 6.7 6 97 0 71 50 12 0 37 1.41 TATACA chr1 17007594 17007658 trf 2 34.0 2 71 22 50 54 0 3 42 1.16 AT chr1 17008200 17008239 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 17013255 17013287 trf 3 10.7 3 100 0 64 68 31 0 0 0.90 AAC chr1 17015456 17015493 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 17016944 17016979 trf 12 2.9 12 100 0 70 0 34 17 48 1.47 TTTGCCTGCCTT chr1 17016970 17017003 trf 4 8.2 4 100 0 66 0 48 24 27 1.51 TGCC chr1 17017000 17017060 trf 4 15.0 4 100 0 120 0 50 0 50 1.00 CCTT chr1 17017005 17017094 trf 12 6.8 14 88 7 59 0 43 0 56 0.99 CTTCCTTTCTTTCT chr1 17017089 17017252 trf 3 54.3 3 96 0 155 0 44 0 55 0.99 TTC chr1 17023028 17023116 trf 2 44.0 2 93 4 142 46 1 52 0 1.08 GA chr1 17023747 17023790 trf 4 10.8 4 100 0 86 51 23 0 25 1.49 ATAC chr1 17025136 17025169 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 17025356 17025389 trf 6 5.5 6 100 0 66 66 15 18 0 1.25 AGAACA chr1 17035466 17035495 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 17048858 17048909 trf 2 25.5 2 89 0 75 47 47 1 3 1.32 AC chr1 17049013 17049054 trf 12 3.3 13 90 10 68 0 0 12 87 0.53 TTTTTTTGTTTTG chr1 17052098 17052127 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 AAAC chr1 17076188 17076217 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 17077719 17077747 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 17081763 17081790 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 17082117 17082153 trf 2 18.0 2 94 0 63 0 0 47 52 1.00 GT chr1 17087022 17087099 trf 11 6.7 11 68 19 50 59 36 0 3 1.16 AACAACCACAA chr1 17087162 17087198 trf 3 11.7 3 88 5 54 69 30 0 0 0.89 AAC chr1 17097962 17097987 trf 12 2.1 12 100 0 50 8 68 24 0 1.16 CACGCCCGCCCG chr1 17098254 17098318 trf 3 21.3 3 100 0 128 0 0 67 32 0.91 GGT chr1 17112172 17112214 trf 4 10.5 4 94 0 75 0 26 0 73 0.83 TTTC chr1 17115523 17115568 trf 4 11.5 4 90 4 74 24 26 0 48 1.51 TATC chr1 17117323 17117352 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 17117679 17117730 trf 2 26.0 2 96 4 95 50 0 0 49 1.00 AT chr1 17118513 17118571 trf 2 29.5 2 96 3 109 48 51 0 0 1.00 CA chr1 17118678 17118721 trf 2 21.5 2 100 0 86 48 0 0 51 1.00 TA chr1 17118736 17118788 trf 2 26.5 2 96 3 97 0 0 50 50 1.00 TG chr1 17119115 17119244 trf 5 27.4 5 98 1 202 0 20 0 79 0.74 TTTCT chr1 17123290 17123338 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 17133881 17133913 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 17136086 17136113 trf 7 3.9 7 100 0 54 88 11 0 0 0.50 AAAAAAC chr1 17137589 17137634 trf 1 45.0 1 86 0 63 93 0 6 0 0.35 A chr1 17141576 17141619 trf 1 43.0 1 100 0 86 0 0 0 100 0.00 T chr1 17146067 17146114 trf 4 11.8 4 100 0 94 51 0 23 25 1.49 ATAG chr1 17151404 17151442 trf 7 5.3 7 82 17 51 13 86 0 0 0.56 CCCACCC chr1 17151404 17151442 trf 8 5.1 8 87 12 55 13 86 0 0 0.56 CCCACCCC chr1 17152279 17152330 trf 4 13.2 4 87 8 79 0 47 0 52 1.00 TCCT chr1 17152327 17152376 trf 4 12.2 4 91 0 80 4 26 0 69 1.06 CTTT chr1 17152382 17152850 trf 3 157.0 3 97 2 746 0 36 0 63 0.95 CTT chr1 17159179 17159255 trf 6 13.3 6 81 10 52 7 3 42 46 1.51 GTATGT chr1 17159182 17159260 trf 10 7.6 10 80 5 57 7 5 42 44 1.55 TGTGCATGTG chr1 17159188 17159258 trf 6 11.7 6 87 0 86 5 2 44 47 1.41 TGTGTG chr1 17159188 17159258 trf 4 17.5 4 81 0 86 5 2 44 47 1.41 TGTG chr1 17159763 17159791 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 17171153 17171181 trf 12 2.3 12 100 0 56 32 17 17 32 1.94 AGTCATGTCAAT chr1 17173879 17173918 trf 5 7.6 5 83 16 53 82 17 0 0 0.68 AAAAC chr1 17173880 17173934 trf 12 4.5 13 80 15 64 79 18 1 0 0.82 AAACAAAACAAAC chr1 17173880 17173935 trf 4 13.0 4 86 9 58 78 20 1 0 0.85 AAAC chr1 17178498 17178523 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TGTC chr1 17178708 17178840 trf 8 17.1 8 76 7 69 51 9 36 2 1.48 AGAGACAG chr1 17178708 17178796 trf 2 44.5 2 77 6 81 50 5 42 2 1.38 AG chr1 17178741 17178846 trf 10 10.2 10 77 10 70 51 13 34 0 1.47 GAGAGACACA chr1 17178778 17178810 trf 12 2.7 12 95 0 55 50 18 31 0 1.48 GAGAGACACACA chr1 17178858 17178905 trf 2 24.0 2 82 4 60 48 44 2 4 1.34 CA chr1 17178908 17178969 trf 2 30.5 2 96 0 113 52 0 47 0 1.00 AG chr1 17189166 17189246 trf 4 19.8 4 97 2 151 75 0 25 0 0.81 AAAG chr1 17190296 17190339 trf 12 3.6 12 83 0 59 9 39 25 25 1.85 TGCCTGCCTGAC chr1 17190296 17190339 trf 4 10.8 4 94 0 50 9 39 25 25 1.85 TGCC chr1 17199006 17199044 trf 1 38.0 1 100 0 76 0 0 0 100 0.00 T chr1 17199968 17200069 trf 12 9.0 11 88 7 89 0 17 0 82 0.68 TTCTTTTTTTT chr1 17199971 17200069 trf 8 12.8 8 87 7 80 0 17 0 82 0.67 TTTTTTCT chr1 17199976 17200032 trf 4 14.2 4 96 3 105 0 25 0 75 0.81 TCTT chr1 17200029 17200069 trf 1 40.0 1 89 0 62 0 5 0 95 0.29 T chr1 17209650 17209679 trf 11 2.6 11 100 0 58 0 0 24 75 0.80 TTTTGTTGTTG chr1 17209960 17209995 trf 4 8.8 4 100 0 70 25 0 0 74 0.82 TATT chr1 17213224 17213311 trf 6 14.5 6 70 13 63 14 4 34 45 1.66 TGTATG chr1 17213238 17213279 trf 10 3.9 10 81 12 55 12 0 39 48 1.41 TGTGTGTGTA chr1 17230579 17230691 trf 3 38.7 3 89 3 160 0 70 0 29 0.87 CTC chr1 17230689 17230728 trf 3 13.0 3 100 0 78 0 33 0 66 0.92 CTT chr1 17231797 17231972 trf 4 43.5 4 93 5 171 0 40 2 56 1.19 TTCC chr1 17231896 17232039 trf 4 35.8 4 98 0 214 0 30 0 69 0.89 TCTT chr1 17232251 17232285 trf 3 11.3 3 100 0 68 67 0 0 32 0.91 ATA chr1 17234582 17234612 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 17244488 17244542 trf 2 28.5 2 78 17 62 48 1 48 1 1.23 GA chr1 17244971 17245088 trf 8 14.6 8 90 3 74 0 61 0 38 0.96 CTTTCCTC chr1 17245007 17245084 trf 4 19.2 4 97 0 127 0 71 0 28 0.86 CCTC chr1 17245083 17245162 trf 4 19.8 4 92 5 106 1 29 0 69 0.96 CTTT chr1 17245716 17245753 trf 4 9.2 4 93 0 65 72 24 2 0 0.97 ACAA chr1 17245886 17245949 trf 2 31.5 2 93 0 108 50 46 1 1 1.20 AC chr1 17246601 17246635 trf 1 34.0 1 87 0 50 0 0 5 94 0.32 T chr1 17246604 17246637 trf 8 4.1 8 92 0 57 0 0 9 90 0.44 TTTTTTTG chr1 17254004 17254037 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 17254036 17254082 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 17261384 17261423 trf 12 3.2 12 88 0 60 15 0 35 48 1.45 ATGTGTGTGTGT chr1 17269041 17269125 trf 5 16.8 5 90 4 109 0 2 15 82 0.78 TTTTG chr1 17275332 17275391 trf 2 29.5 2 96 0 109 1 0 49 49 1.11 GT chr1 17282694 17282808 trf 12 9.8 12 87 11 114 44 0 55 0 0.99 AGAGGAGGAGGA chr1 17282694 17282804 trf 6 18.0 6 77 14 82 45 0 54 0 0.99 AGAGGA chr1 17282722 17282815 trf 6 15.3 6 78 14 57 41 0 58 0 0.98 GAAGGA chr1 17282731 17282814 trf 3 27.0 3 85 4 112 39 0 60 0 0.97 GAG chr1 17283002 17283047 trf 1 45.0 1 86 0 63 0 0 6 93 0.35 T chr1 17297924 17298006 trf 4 20.8 4 89 2 76 65 2 31 0 1.05 AAAG chr1 17297988 17298031 trf 11 3.8 11 78 6 50 83 4 11 0 0.78 AAAGAAAAAAA chr1 17298098 17298166 trf 2 34.0 2 96 0 127 0 48 0 51 1.00 TC chr1 17298165 17298198 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 17299217 17299426 trf 4 55.8 4 79 14 144 25 22 4 46 1.71 TCTA chr1 17300181 17300257 trf 4 18.8 4 76 12 57 1 31 1 65 1.09 CTTT chr1 17305641 17305675 trf 2 17.0 2 93 0 59 0 52 0 47 1.00 TC chr1 17305644 17305693 trf 12 4.1 12 91 0 62 0 63 0 36 0.95 CTCTCTCCCTCC chr1 17305644 17305693 trf 8 6.1 8 95 0 62 0 63 0 36 0.95 CTCTCTCC chr1 17306694 17306720 trf 10 2.6 10 100 0 52 50 11 30 7 1.67 AGAAGCTAGA chr1 17307168 17307194 trf 4 6.5 4 100 0 52 76 0 0 23 0.78 AATA chr1 17314416 17314479 trf 1 63.0 1 83 0 81 92 4 3 0 0.48 A chr1 17317400 17317434 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 17319722 17319752 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 17325200 17325233 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 17336306 17336366 trf 4 15.0 4 100 0 120 0 25 0 75 0.81 TCTT chr1 17336363 17336395 trf 4 8.0 4 100 0 64 0 50 0 50 1.00 CTTC chr1 17336393 17336431 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 17337227 17337262 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 17337767 17337805 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 17338117 17338144 trf 4 6.8 4 100 0 54 48 0 0 51 1.00 ATTA chr1 17341092 17341153 trf 5 12.2 5 82 0 77 60 34 3 1 1.23 AAACC chr1 17349402 17349445 trf 3 14.3 3 100 0 86 67 0 0 32 0.91 AAT chr1 17349591 17349656 trf 2 33.0 2 93 3 114 1 0 49 49 1.10 GT chr1 17354328 17354433 trf 4 26.2 4 92 0 147 43 0 56 0 0.99 AGAG chr1 17354328 17354433 trf 10 10.5 10 92 0 147 43 0 56 0 0.99 AGAGAGAGAG chr1 17355399 17355447 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 AC chr1 17366885 17366913 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 17367050 17367108 trf 2 29.0 2 82 0 71 0 58 0 41 0.98 CT chr1 17367052 17367105 trf 6 8.8 6 95 0 79 0 60 0 39 0.97 CTCTCC chr1 17367123 17367154 trf 2 15.5 2 100 0 62 48 0 51 0 1.00 GA chr1 17372983 17373013 trf 3 10.0 3 100 0 60 66 0 0 33 0.92 TAA chr1 17383283 17383333 trf 1 50.0 1 87 0 73 2 0 4 94 0.38 T chr1 17390429 17390496 trf 1 67.0 1 77 0 53 86 11 1 0 0.64 A chr1 17390435 17390497 trf 8 7.8 8 81 18 67 85 12 1 0 0.67 AAAAACAA chr1 17394030 17394105 trf 11 6.5 11 69 26 50 1 1 22 74 0.97 GTTTTTGTTTT chr1 17396149 17396324 trf 10 16.9 10 75 13 113 45 43 10 1 1.45 ACACACACAG chr1 17396149 17396326 trf 6 29.5 6 74 2 158 45 43 10 1 1.45 ACACAC chr1 17396151 17396261 trf 8 13.0 8 80 8 69 47 43 8 0 1.39 ACACACAG chr1 17401816 17401845 trf 10 3.0 10 95 5 51 20 20 37 20 1.94 CTCAGGAGGT chr1 17410016 17410059 trf 6 7.5 6 89 5 63 81 18 0 0 0.69 AAACAA chr1 17412778 17412922 trf 4 36.0 4 76 2 83 49 36 10 4 1.56 CACA chr1 17414576 17414623 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 17415585 17415618 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 17418087 17418132 trf 5 9.0 5 100 0 90 20 0 0 80 0.72 TATTT chr1 17418453 17418486 trf 5 6.4 5 96 3 57 78 21 0 0 0.75 AAAAC chr1 17422040 17422123 trf 3 27.0 3 95 4 148 0 34 0 65 0.93 CTT chr1 17431369 17431422 trf 3 17.7 3 100 0 106 67 32 0 0 0.91 AAC chr1 17432614 17432651 trf 1 37.0 1 88 0 56 94 5 0 0 0.30 A chr1 17441637 17441684 trf 4 11.8 4 90 0 76 25 44 0 29 1.54 ATCC chr1 17456752 17456795 trf 2 21.5 2 90 0 68 51 44 0 4 1.22 AC chr1 17457189 17457220 trf 1 31.0 1 93 0 53 0 0 3 96 0.21 T chr1 17460447 17460487 trf 4 10.0 4 100 0 80 75 0 0 25 0.81 AAAT chr1 17473504 17473529 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 17486738 17486767 trf 8 3.8 8 90 9 51 13 0 0 86 0.58 TTTTTATT chr1 17492286 17492347 trf 2 30.5 2 89 0 95 3 1 49 45 1.28 GT chr1 17495669 17495697 trf 3 9.3 3 100 0 56 67 0 0 32 0.91 ATA chr1 17496001 17496044 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 17497169 17497199 trf 12 2.5 12 94 0 51 3 66 0 30 1.07 CTCCCTCCATCC chr1 17497311 17497343 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 17501881 17501963 trf 6 13.5 6 81 14 89 0 0 13 86 0.57 TTTGTT chr1 17501885 17501963 trf 1 78.0 1 76 0 66 0 0 12 87 0.55 T chr1 17502948 17503015 trf 2 33.5 2 93 0 98 47 47 0 4 1.22 AC chr1 17512846 17512911 trf 3 21.7 3 82 6 78 3 3 58 35 1.29 TGG chr1 17513938 17513974 trf 4 9.0 4 100 0 72 75 0 25 0 0.81 AAAG chr1 17514117 17514177 trf 8 7.6 8 80 10 52 8 1 45 45 1.43 TGTGTGAG chr1 17514139 17514187 trf 2 23.5 2 91 4 78 2 0 45 52 1.12 TG chr1 17515466 17515535 trf 2 34.5 2 91 0 102 50 43 2 2 1.32 AC chr1 17519758 17519797 trf 6 6.5 6 84 0 51 0 23 2 74 0.94 CTTTTT chr1 17521807 17521868 trf 2 31.5 2 77 6 63 50 6 0 42 1.28 AT chr1 17524187 17524231 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 17527648 17527746 trf 10 9.9 10 81 10 78 42 42 1 13 1.50 CACACACATA chr1 17527668 17527722 trf 2 27.0 2 96 0 99 50 48 0 1 1.11 CA chr1 17527897 17527985 trf 4 22.2 4 82 2 97 23 18 5 52 1.66 TATC chr1 17527907 17527985 trf 12 6.6 12 94 1 131 25 17 6 50 1.70 TCTATCTATGTA chr1 17529037 17529065 trf 3 9.3 3 100 0 56 35 64 0 0 0.94 ACC chr1 17532887 17532913 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 17543330 17543389 trf 5 11.8 5 88 0 73 3 25 18 52 1.61 GTCTT chr1 17543386 17543434 trf 2 24.5 2 95 4 89 0 50 0 50 1.00 TC chr1 17545653 17545812 trf 3 53.0 3 91 0 255 33 4 62 0 1.15 GAG chr1 17545810 17545868 trf 3 19.3 3 92 0 98 67 0 32 0 0.91 AGA chr1 17546523 17546586 trf 4 16.5 4 75 15 62 26 28 0 44 1.55 ATCT chr1 17546527 17546576 trf 7 7.0 7 78 17 57 28 28 0 42 1.56 ATCTATC chr1 17559277 17559321 trf 10 4.5 10 82 2 54 0 36 9 54 1.32 TCTCTGTCTC chr1 17564394 17564444 trf 12 4.1 12 78 21 59 0 0 20 80 0.72 TGTTTTGTTTTT chr1 17570141 17570180 trf 5 7.8 5 94 0 69 2 0 15 82 0.79 TTTTG chr1 17572818 17572852 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 17575707 17575741 trf 12 2.7 13 86 9 52 76 20 0 2 0.92 CAAAACAAACAAA chr1 17575870 17575902 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 17580372 17580409 trf 3 12.3 3 88 0 56 67 27 0 5 1.12 ACA chr1 17589033 17589061 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 17589707 17589741 trf 5 6.6 5 93 6 59 23 0 0 76 0.79 TTATT chr1 17589898 17589938 trf 6 6.7 6 83 11 55 0 0 17 82 0.67 TTTTTG chr1 17592952 17593036 trf 2 42.0 2 97 0 141 50 3 0 46 1.19 TA chr1 17598154 17598187 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 17603207 17603245 trf 4 9.8 4 94 5 69 0 0 21 78 0.74 TTTG chr1 17618990 17619058 trf 2 34.0 2 84 0 91 47 51 0 1 1.09 AC chr1 17625015 17625051 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 17629120 17629162 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 17629594 17629662 trf 2 34.0 2 96 0 127 0 0 48 51 1.00 TG chr1 17629661 17629691 trf 2 15.0 2 100 0 60 50 0 50 0 1.00 GA chr1 17634537 17634643 trf 2 54.5 2 85 5 137 50 0 47 1 1.18 GA chr1 17639642 17639691 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 17641070 17641247 trf 6 29.3 6 91 1 201 0 57 0 42 0.99 CTCCTC chr1 17646342 17646367 trf 4 6.2 4 100 0 50 72 0 0 28 0.86 TAAA chr1 17648455 17648518 trf 6 10.5 6 100 0 126 50 0 15 33 1.45 ATAGAT chr1 17649162 17649239 trf 4 19.2 4 100 0 154 0 24 0 75 0.81 TTTC chr1 17649236 17649287 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 17649708 17649750 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 17652284 17652487 trf 12 16.1 13 70 24 68 34 0 61 2 1.18 GAGGGAGAGGAAG chr1 17652329 17652381 trf 10 4.9 10 79 11 50 40 1 57 0 1.10 AGGGAGGGAA chr1 17652353 17652483 trf 6 22.7 6 75 12 130 32 0 64 2 1.11 GAGGGA chr1 17652496 17652530 trf 12 2.9 12 91 4 52 38 0 61 0 0.96 AGGAGAAGGAGG chr1 17653333 17653374 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 17653373 17653430 trf 2 28.5 2 96 0 105 1 0 47 50 1.11 TG chr1 17655580 17655623 trf 2 21.5 2 100 0 86 48 0 51 0 1.00 GA chr1 17656350 17656391 trf 2 21.0 2 90 5 66 48 48 0 2 1.14 CA chr1 17656719 17656754 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 17661698 17661882 trf 2 94.5 2 88 5 279 0 47 0 51 1.04 TC chr1 17668088 17668166 trf 3 26.0 3 100 0 156 66 0 33 0 0.92 GAA chr1 17688035 17688075 trf 10 4.0 10 90 0 62 40 10 10 40 1.72 TTGTAATCAA chr1 17690373 17690412 trf 3 13.0 3 88 0 60 33 5 0 61 1.18 ATT chr1 17698553 17698585 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 17698682 17698723 trf 1 41.0 1 100 0 82 100 0 0 0 0.00 A chr1 17708550 17708575 trf 4 6.2 4 100 0 50 0 0 76 24 0.80 GTGG chr1 17709632 17709680 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 17713182 17713575 trf 5 77.4 5 78 15 274 0 48 0 51 1.00 TTCTC chr1 17713188 17713575 trf 12 33.5 12 93 4 378 0 49 0 50 1.00 TCTCTTCTCTTC chr1 17714702 17714747 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 17714748 17714773 trf 8 3.1 8 100 0 50 52 12 36 0 1.39 AGACAGAG chr1 17720205 17720238 trf 4 8.2 4 93 0 57 72 24 3 0 0.98 AAAC chr1 17721735 17721792 trf 2 28.5 2 96 0 105 49 49 0 1 1.11 AC chr1 17737249 17737311 trf 2 31.0 2 96 0 115 50 48 0 1 1.10 AC chr1 17738267 17738345 trf 2 39.0 2 100 0 156 50 0 50 0 1.00 GA chr1 17739606 17739653 trf 2 23.5 2 95 0 85 0 2 48 48 1.13 GT chr1 17743605 17743650 trf 2 22.5 2 90 0 72 4 0 44 51 1.21 TG chr1 17749273 17749320 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 17749894 17750165 trf 4 66.5 4 83 14 342 71 0 28 0 0.86 AAAG chr1 17755353 17755393 trf 4 10.0 4 88 0 62 77 20 0 2 0.88 AAAC chr1 17756192 17756217 trf 12 2.1 12 100 0 50 92 0 8 0 0.40 AAAAAAAAAGAA chr1 17763453 17763496 trf 2 21.5 2 95 0 77 53 0 46 0 1.00 AG chr1 17764901 17764954 trf 2 26.5 2 100 0 106 50 0 49 0 1.00 AG chr1 17768971 17769013 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 17769860 17769911 trf 9 5.2 9 78 17 57 80 19 0 0 0.71 AAAAACAAA chr1 17769863 17769917 trf 12 4.7 12 79 9 58 79 20 0 0 0.73 AACAAAAACAAC chr1 17769869 17769917 trf 6 7.8 6 82 13 53 79 20 0 0 0.74 AAAAAC chr1 17770077 17770122 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 17771661 17771774 trf 4 28.2 4 85 3 138 68 0 30 0 1.02 AAAG chr1 17771791 17771897 trf 4 25.8 4 90 3 131 54 0 44 0 1.06 AGGA chr1 17771894 17771947 trf 4 13.2 4 100 0 106 26 0 73 0 0.83 AGGG chr1 17773689 17773714 trf 7 3.6 7 100 0 50 12 12 12 64 1.51 TTTTGCA chr1 17778392 17778437 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 17792703 17792744 trf 8 5.4 7 91 8 55 78 21 0 0 0.76 AACAAAA chr1 17792710 17792744 trf 4 9.0 4 87 12 54 79 20 0 0 0.73 AAAC chr1 17792710 17792744 trf 11 3.0 11 91 8 59 79 20 0 0 0.73 AAACAAAAAAC chr1 17793053 17793148 trf 10 10.1 10 73 19 55 40 9 50 0 1.35 AGAGAGGCAG chr1 17793071 17793135 trf 12 5.3 12 80 14 78 42 7 50 0 1.31 AGAGAGAGGCAG chr1 17793073 17793148 trf 8 10.4 8 67 25 51 41 8 50 0 1.32 AGAGAGGC chr1 17793152 17793247 trf 8 12.9 7 74 19 70 50 6 42 1 1.34 AGAGAGA chr1 17795088 17795389 trf 4 78.8 4 79 10 326 26 25 1 46 1.61 ATCT chr1 17795527 17795605 trf 4 19.5 4 85 5 86 0 34 0 65 0.93 CTTT chr1 17798788 17798828 trf 12 3.3 12 85 0 62 62 25 10 2 1.39 CACAAAAGAACA chr1 17801022 17801062 trf 4 10.0 4 88 0 62 0 2 22 75 0.93 GTTT chr1 17808050 17808101 trf 2 25.5 2 89 0 75 54 43 0 1 1.11 AC chr1 17814573 17814606 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 17826663 17826723 trf 12 5.3 11 75 20 61 76 20 1 1 0.96 AAAAACAAACA chr1 17826681 17826727 trf 4 11.8 4 78 21 53 78 21 0 0 0.76 AAAC chr1 17826741 17826839 trf 5 19.6 5 97 0 160 76 0 23 0 0.79 AAAAG chr1 17827863 17827914 trf 5 10.4 5 95 4 95 60 0 0 39 0.97 AATAT chr1 17833900 17833952 trf 12 4.0 12 76 14 50 80 19 0 0 0.71 AAAAAAAAAAAC chr1 17833900 17833951 trf 8 6.2 8 84 10 50 82 17 0 0 0.67 AAAAACAA chr1 17833902 17833937 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 17836622 17836647 trf 8 3.1 8 100 0 50 24 0 24 52 1.48 TATATGTG chr1 17836775 17836810 trf 2 17.5 2 93 0 61 2 0 45 51 1.16 TG chr1 17839081 17839134 trf 3 17.7 3 88 0 79 32 62 0 5 1.19 CAC chr1 17843928 17843968 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 AT chr1 17844440 17844498 trf 5 12.8 5 81 15 56 86 13 0 0 0.58 AAAAC chr1 17844440 17844484 trf 1 44.0 1 81 0 52 90 9 0 0 0.44 A chr1 17845255 17845301 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 17845642 17845699 trf 3 18.7 3 96 3 105 68 0 0 31 0.90 AAT chr1 17852247 17852293 trf 5 9.8 5 95 4 71 80 19 0 0 0.71 AAAAC chr1 17858280 17858350 trf 6 11.7 6 89 0 95 1 2 17 78 0.94 TTTTGT chr1 17858586 17858615 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 17858666 17858731 trf 4 16.8 4 90 6 107 24 24 0 50 1.49 TATC chr1 17860063 17860106 trf 4 10.8 4 100 0 86 0 74 0 25 0.82 CCTC chr1 17860105 17860171 trf 4 16.5 4 100 0 132 0 24 0 75 0.80 TTCT chr1 17864425 17864455 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 17875109 17875164 trf 2 27.5 2 100 0 110 0 50 0 49 1.00 CT chr1 17882198 17882252 trf 6 9.7 6 82 15 55 1 1 14 81 0.86 TTTTGT chr1 17882211 17882251 trf 5 7.8 5 89 10 55 0 0 17 82 0.67 TTTTG chr1 17882407 17882454 trf 3 15.7 3 100 0 94 0 0 31 68 0.90 TTG chr1 17882452 17882523 trf 3 23.7 3 100 0 142 0 32 0 67 0.91 TTC chr1 17893273 17893305 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 17904661 17904701 trf 12 3.5 12 80 13 57 10 10 7 72 1.28 TTCTTTGTATAT chr1 17910637 17910694 trf 5 11.8 5 85 14 84 80 19 0 0 0.71 AAAAC chr1 17912291 17912371 trf 4 19.8 4 92 2 52 66 3 10 20 1.37 AAAT chr1 17912304 17912339 trf 12 2.9 12 100 0 70 51 0 22 25 1.48 AATGAATGAATG chr1 17912987 17913018 trf 4 7.8 4 92 0 53 48 3 0 48 1.17 TTAA chr1 17913714 17913752 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 CT chr1 17913751 17913820 trf 2 34.5 2 88 0 102 4 1 46 47 1.31 TG chr1 17914820 17914860 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 17916133 17916181 trf 1 48.0 1 89 0 69 4 2 0 93 0.39 T chr1 17924189 17924227 trf 3 12.7 3 83 10 51 0 63 0 36 0.95 TCC chr1 17927384 17927470 trf 2 44.5 2 86 6 106 43 1 55 0 1.07 GA chr1 17930866 17930915 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 17931090 17931171 trf 4 20.2 4 92 0 90 0 39 9 50 1.36 TCTC chr1 17931170 17931209 trf 2 19.5 2 94 0 69 0 2 46 51 1.14 TG chr1 17933335 17933386 trf 2 25.5 2 95 0 93 47 0 1 50 1.12 TA chr1 17957640 17957666 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 17969294 17969407 trf 8 14.6 8 87 6 72 61 1 36 0 1.13 AGGAAGCA chr1 17969312 17969407 trf 8 12.0 8 92 1 138 63 0 36 0 0.95 GAAAGGAA chr1 17976961 17977008 trf 5 9.8 5 86 4 62 80 17 2 0 0.80 AAAAC chr1 17978877 17978929 trf 2 26.0 2 83 14 63 50 44 3 1 1.31 CA chr1 17978928 17979068 trf 12 11.3 12 90 4 138 54 0 45 0 0.99 AGAAAGAGGAAG chr1 17978928 17979068 trf 6 23.7 6 94 2 113 54 0 45 0 0.99 AGAAAG chr1 17978932 17979000 trf 8 8.5 8 90 0 100 55 0 44 0 0.99 AGAGAGAG chr1 17986332 17986378 trf 9 5.1 9 81 7 58 84 15 0 0 0.62 AAAAAAAAC chr1 17990829 17990867 trf 2 19.0 2 94 0 67 0 0 47 52 1.00 TG chr1 17999241 17999266 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 18000090 18000124 trf 12 2.8 12 90 0 50 79 2 14 2 0.97 AAAAGAAAAAAG chr1 18000628 18000716 trf 10 9.2 10 75 18 80 1 56 1 40 1.14 TCTCCCTCTC chr1 18000628 18000706 trf 8 9.5 8 74 18 54 1 57 0 41 1.07 TCTCCCTC chr1 18000656 18000708 trf 2 26.0 2 80 7 61 1 51 0 46 1.12 TC chr1 18000831 18000885 trf 2 27.5 2 96 3 101 51 0 0 48 1.00 AT chr1 18002245 18002287 trf 4 10.5 4 100 0 84 76 0 0 23 0.79 AAAT chr1 18004979 18005010 trf 11 2.8 11 90 0 53 32 0 67 0 0.91 GGAGGGAGAAG chr1 18005006 18005066 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 18005586 18005618 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 18007619 18007670 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 18010996 18011040 trf 5 8.8 5 100 0 88 79 20 0 0 0.73 AACAA chr1 18011951 18012003 trf 2 26.0 2 96 0 95 0 1 48 50 1.12 TG chr1 18012002 18012067 trf 12 5.4 12 85 7 78 47 7 43 1 1.41 GAGAGAGACAGA chr1 18012002 18012067 trf 6 10.8 6 86 6 69 47 7 43 1 1.41 GAGAGA chr1 18013293 18013343 trf 2 25.5 2 91 4 84 52 2 0 46 1.12 AT chr1 18014157 18014207 trf 5 10.6 5 93 6 79 0 0 20 80 0.72 TTTGT chr1 18015218 18015265 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 18019988 18020024 trf 12 3.0 12 95 0 63 16 72 0 11 1.12 TCCCCCACCCAC chr1 18024404 18024464 trf 2 30.0 2 86 0 84 50 43 5 1 1.34 AC chr1 18029166 18029209 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 18032989 18033060 trf 2 35.5 2 84 5 90 46 1 50 1 1.18 AG chr1 18035010 18035118 trf 4 27.0 4 95 0 90 0 37 0 62 1.02 TTTC chr1 18035048 18035099 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 18035504 18035554 trf 2 25.5 2 93 4 84 2 52 0 46 1.12 CT chr1 18035553 18035598 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 18038621 18038684 trf 8 8.4 8 82 7 53 44 25 6 23 1.77 ATGCATAC chr1 18038633 18038683 trf 4 12.5 4 91 0 73 48 28 2 22 1.62 ATAC chr1 18048037 18048081 trf 4 11.0 4 95 0 79 72 2 0 25 0.96 ATAA chr1 18050311 18050345 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 18051793 18051854 trf 2 30.5 2 96 0 113 0 50 0 49 1.00 TC chr1 18051853 18051894 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 18052726 18052753 trf 5 5.4 5 100 0 54 81 18 0 0 0.69 AAAAC chr1 18056207 18056240 trf 4 8.2 4 100 0 66 72 0 0 27 0.85 TAAA chr1 18060570 18060616 trf 3 15.3 3 95 0 83 65 0 2 32 1.05 ATA chr1 18060969 18061041 trf 2 36.0 2 91 0 117 47 48 2 1 1.25 CA chr1 18061622 18061657 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 18066217 18066286 trf 4 19.0 4 75 19 55 0 0 21 78 0.76 TTTG chr1 18087730 18087787 trf 3 19.3 3 96 3 107 0 0 31 68 0.90 TGT chr1 18105852 18105899 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 18109761 18109797 trf 4 9.0 4 93 0 63 77 22 0 0 0.76 CAAA chr1 18114173 18114232 trf 4 14.8 4 96 0 109 76 0 23 0 0.79 GAAA chr1 18114620 18114799 trf 2 91.0 2 90 3 283 50 46 0 2 1.16 AC chr1 18119456 18119482 trf 4 6.5 4 100 0 52 23 26 0 50 1.50 TCAT chr1 18124592 18124645 trf 2 26.5 2 96 0 97 50 49 0 0 1.00 CA chr1 18125361 18125435 trf 11 6.8 11 76 4 62 2 51 0 45 1.15 CTCCTCCTCTT chr1 18147223 18147291 trf 5 14.8 5 93 4 85 88 0 11 0 0.52 AAAAG chr1 18147223 18147292 trf 1 69.0 1 76 0 66 88 0 11 0 0.52 A chr1 18147442 18147512 trf 4 17.5 4 96 0 104 20 24 5 50 1.70 ATCT chr1 18160539 18160599 trf 6 10.3 6 85 7 88 0 65 0 35 0.93 TCTCCC chr1 18164680 18164773 trf 6 15.8 6 87 4 136 0 33 16 50 1.45 TCTCTG chr1 18164787 18164817 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 18165246 18165272 trf 12 2.2 12 100 0 52 0 42 0 57 0.98 CTCTTCTCTTCT chr1 18166547 18166633 trf 4 22.0 4 92 4 131 0 27 0 72 0.85 TTTC chr1 18166641 18166676 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 18167061 18167095 trf 12 2.7 13 90 4 52 47 0 5 47 1.26 ATATATATTAGAA chr1 18169064 18169106 trf 5 8.6 5 92 2 68 0 2 16 80 0.81 TTTGT chr1 18170135 18170175 trf 4 10.0 4 100 0 80 25 0 25 50 1.50 TTGA chr1 18171400 18171442 trf 6 7.5 6 84 10 54 83 16 0 0 0.65 AAAAAC chr1 18171401 18171453 trf 5 10.2 5 85 10 54 80 19 0 0 0.71 AAAAC chr1 18182438 18182512 trf 2 37.0 2 100 0 148 50 0 50 0 1.00 GA chr1 18187210 18187460 trf 4 60.8 4 88 4 194 64 0 35 0 0.97 AAAG chr1 18189126 18189166 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 18189168 18189202 trf 2 18.0 2 88 11 54 47 0 52 0 1.00 GA chr1 18189170 18189202 trf 11 2.9 11 100 0 64 46 0 53 0 1.00 GAGAGAGAGAG chr1 18189651 18189845 trf 4 44.2 4 89 5 145 0 53 0 45 1.08 TCCT chr1 18189704 18189756 trf 2 26.0 2 96 0 95 0 51 0 48 1.00 TC chr1 18194084 18194137 trf 2 27.5 2 92 7 92 50 0 0 49 1.00 AT chr1 18194432 18194466 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 18195292 18195323 trf 4 7.8 4 92 0 53 3 0 22 74 0.96 TTTG chr1 18197174 18197205 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 18198535 18198566 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 18206775 18206829 trf 2 27.5 2 96 3 101 0 0 50 50 1.00 TG chr1 18229071 18229142 trf 5 15.0 5 86 7 96 0 15 1 83 0.73 CTTTT chr1 18235483 18235517 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 18235523 18235580 trf 2 29.5 2 92 7 100 52 0 47 0 1.00 AG chr1 18236723 18236813 trf 4 22.5 4 74 0 81 34 1 38 25 1.63 ATGG chr1 18236759 18236814 trf 8 6.9 8 93 0 92 38 0 36 25 1.56 ATGGATAG chr1 18237778 18237825 trf 4 11.8 4 100 0 94 25 48 0 25 1.51 TACC chr1 18250558 18250636 trf 10 7.9 10 88 2 113 50 7 39 2 1.45 AGAGAGACAG chr1 18250558 18250630 trf 2 35.5 2 77 2 72 50 6 41 1 1.38 AG chr1 18250855 18250888 trf 5 6.8 5 93 6 59 81 18 0 0 0.68 AAAAC chr1 18252613 18252663 trf 6 8.0 6 79 16 57 68 12 20 0 1.21 CAAGAA chr1 18254828 18254878 trf 6 8.0 6 79 16 57 68 12 20 0 1.21 CAAGAA chr1 18255967 18255999 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 18255996 18256029 trf 10 3.3 10 91 0 57 54 36 0 9 1.32 ATACACACAC chr1 18256340 18256379 trf 6 6.7 6 88 5 53 0 0 20 79 0.73 TTTTGT chr1 18258099 18258142 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 18259372 18259409 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 18261814 18261854 trf 4 10.0 4 88 0 62 25 5 0 70 1.08 ATTT chr1 18264137 18264168 trf 4 7.8 4 100 0 62 51 0 22 25 1.48 AATG chr1 18271360 18271405 trf 2 22.5 2 90 0 72 0 4 46 48 1.22 TG chr1 18273921 18273961 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 18280674 18280716 trf 3 14.0 3 100 0 84 33 0 0 66 0.92 TAT chr1 18283193 18283238 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 18285128 18285263 trf 4 34.0 4 86 7 105 0 54 0 44 1.05 TCCT chr1 18285262 18285306 trf 4 11.0 4 100 0 88 0 25 0 75 0.81 TCTT chr1 18285578 18285620 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 18286178 18286226 trf 5 10.4 5 86 4 50 77 18 0 4 0.93 AAACA chr1 18286198 18286228 trf 4 7.2 4 92 7 51 73 23 0 3 0.98 AAAC chr1 18288820 18288867 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 18292352 18292398 trf 2 23.0 2 95 0 83 47 50 0 2 1.13 CA chr1 18294199 18294306 trf 6 17.8 6 89 0 124 0 40 8 50 1.39 TCTCTC chr1 18294199 18294306 trf 8 13.4 8 85 7 119 0 40 8 50 1.39 TCTCTGTC chr1 18294305 18294347 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 18294424 18294450 trf 11 2.4 11 100 0 52 53 0 7 38 1.30 AAAATTATTGT chr1 18295527 18295558 trf 3 10.3 3 100 0 62 32 67 0 0 0.91 CCA chr1 18297043 18297072 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 18297064 18297097 trf 12 2.6 13 85 9 50 81 0 18 0 0.68 AAAAGAAAGAAAG chr1 18310840 18310887 trf 2 23.5 2 95 0 85 51 46 2 0 1.13 AC chr1 18310884 18310923 trf 10 3.9 10 79 0 51 48 10 2 38 1.51 ACATATATAT chr1 18314672 18314717 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 18315380 18315421 trf 2 20.5 2 100 0 82 48 0 0 51 1.00 TA chr1 18318115 18318159 trf 2 22.0 2 95 0 79 2 0 47 50 1.13 TG chr1 18318663 18318727 trf 2 32.0 2 87 0 92 50 6 0 43 1.27 TA chr1 18319199 18319231 trf 12 2.7 12 100 0 64 43 0 6 50 1.27 ATATATATGTAT chr1 18319199 18319235 trf 2 18.0 2 88 0 54 44 0 5 50 1.25 AT chr1 18320151 18320193 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 TG chr1 18320192 18320255 trf 2 32.0 2 93 3 110 47 0 52 0 1.00 GA chr1 18329840 18330101 trf 4 66.2 4 88 3 296 0 32 0 66 0.97 TTTC chr1 18333873 18333907 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 18335538 18335587 trf 4 12.8 4 81 16 59 81 18 0 0 0.69 AAAC chr1 18335542 18335583 trf 7 6.0 7 91 8 59 82 17 0 0 0.66 AAACAAA chr1 18336115 18336171 trf 12 4.7 12 71 8 51 0 57 0 42 0.99 TCCTTCTTCTCC chr1 18338350 18338420 trf 2 35.0 2 100 0 140 50 0 50 0 1.00 AG chr1 18340114 18340147 trf 3 11.0 3 93 0 57 63 0 3 33 1.10 ATA chr1 18340969 18341007 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 18341598 18341653 trf 4 13.8 4 100 0 110 0 50 0 49 1.00 TCCT chr1 18341657 18341684 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 18341684 18341754 trf 4 17.5 4 96 0 131 0 25 0 74 0.82 TTTC chr1 18345917 18345957 trf 12 3.3 12 96 0 71 47 15 12 25 1.80 AAATTGGTCACA chr1 18351896 18351946 trf 6 8.0 6 88 6 73 2 30 0 68 1.01 TTTCCT chr1 18351944 18352000 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 CT chr1 18354921 18355219 trf 8 34.7 10 66 29 138 0 52 0 47 1.05 TCTCTCTCTC chr1 18354923 18355123 trf 5 40.0 5 98 0 256 0 47 0 53 1.00 TCTCT chr1 18354959 18355218 trf 5 51.0 5 94 2 198 0 54 0 44 1.05 CTCTC chr1 18355168 18355219 trf 2 25.5 2 88 7 77 3 47 0 49 1.20 TC chr1 18355216 18355244 trf 4 7.0 4 100 0 56 0 25 0 75 0.81 TCTT chr1 18355283 18355308 trf 5 5.0 5 100 0 50 0 0 20 80 0.72 GTTTT chr1 18356080 18356144 trf 4 16.0 4 100 0 128 0 25 0 75 0.81 CTTT chr1 18356961 18357005 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 18358343 18358391 trf 5 9.6 5 100 0 96 0 0 18 81 0.70 TTTTG chr1 18360534 18360568 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 18360679 18360709 trf 3 10.0 3 92 0 51 33 63 0 3 1.11 ACC chr1 18360718 18360780 trf 2 31.0 2 93 0 106 50 46 0 3 1.17 CA chr1 18364255 18364368 trf 6 18.7 6 87 1 136 19 30 0 49 1.49 TATCTC chr1 18370916 18370967 trf 10 5.2 10 88 2 68 64 0 33 1 1.05 AAGAGAAGAG chr1 18371360 18371417 trf 5 11.8 5 88 7 91 40 0 1 57 1.09 TATAT chr1 18373172 18373211 trf 12 3.3 12 92 3 62 64 0 5 30 1.15 ATAATGATAATA chr1 18373177 18373211 trf 3 11.3 3 93 0 59 64 0 2 32 1.08 ATA chr1 18377333 18377358 trf 11 2.3 11 100 0 50 72 0 12 16 1.13 AGATAATAAAA chr1 18378215 18378245 trf 2 15.0 2 92 0 51 50 46 0 3 1.18 CA chr1 18378822 18378855 trf 2 16.5 2 100 0 66 0 51 0 48 1.00 CT chr1 18380308 18380538 trf 2 115.0 2 77 5 196 44 6 5 43 1.52 AT chr1 18381259 18381293 trf 6 5.7 6 86 13 52 0 0 14 85 0.60 TTTTGT chr1 18385079 18385115 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 18388833 18388874 trf 5 7.8 5 94 5 64 82 17 0 0 0.66 AAAAC chr1 18391266 18391480 trf 12 18.6 12 82 10 135 63 0 36 0 0.95 GAAGGAAAGAAG chr1 18391275 18391561 trf 4 72.0 4 84 5 105 57 0 42 0 0.98 GAAG chr1 18391294 18391460 trf 12 13.6 12 88 5 208 68 0 31 0 0.90 GAAAGAAAGAAA chr1 18397121 18397161 trf 12 3.5 11 89 3 53 57 2 37 2 1.26 AGAAGAAGAGA chr1 18397159 18397190 trf 3 10.3 3 100 0 62 35 0 64 0 0.94 AGG chr1 18400371 18400406 trf 12 3.0 12 95 4 63 42 5 8 42 1.59 GTTTCTATAAAA chr1 18401479 18401511 trf 3 10.7 3 100 0 64 0 0 31 68 0.90 TTG chr1 18404018 18404046 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 18404045 18404258 trf 2 108.0 2 77 4 200 49 7 41 1 1.42 GA chr1 18411849 18411880 trf 4 7.8 4 100 0 62 51 22 25 0 1.48 AGAC chr1 18412573 18412606 trf 2 17.0 2 87 6 50 48 0 48 3 1.17 AG chr1 18412689 18412767 trf 4 20.5 4 74 10 56 2 32 15 50 1.58 CTGT chr1 18412708 18412787 trf 8 10.4 8 74 10 67 1 32 12 53 1.47 TCTGTCTC chr1 18414464 18414595 trf 3 43.7 3 92 0 199 61 0 38 0 0.96 AAG chr1 18420324 18420383 trf 10 6.0 10 96 4 111 30 10 28 30 1.90 TGTACAGATG chr1 18420963 18421055 trf 4 23.0 4 93 4 114 67 0 32 0 0.91 AAAG chr1 18421016 18421066 trf 4 12.5 4 91 0 82 56 0 44 0 0.99 AAGG chr1 18423859 18423911 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 18429354 18429380 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 18431156 18431206 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 18432354 18432388 trf 4 8.5 4 100 0 68 0 23 23 52 1.47 TTGC chr1 18432611 18432730 trf 7 16.1 7 71 15 53 60 36 0 1 1.13 AAAAACC chr1 18434466 18434496 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 18436343 18436513 trf 2 86.5 2 90 3 256 51 47 0 0 1.04 AC chr1 18436868 18436927 trf 2 29.5 2 100 0 118 49 0 50 0 1.00 GA chr1 18436926 18436969 trf 11 3.8 12 79 14 56 44 0 30 25 1.55 GGATAGATAGAT chr1 18439093 18439140 trf 3 15.7 3 100 0 94 0 65 0 34 0.93 TCC chr1 18439138 18439191 trf 3 18.0 3 92 3 90 0 33 0 66 0.92 TCT chr1 18439183 18439411 trf 3 75.0 3 65 14 58 1 57 1 39 1.18 CTC chr1 18439235 18439282 trf 11 4.1 11 89 8 67 0 78 2 19 0.85 CCCCTCCCCTC chr1 18439306 18439405 trf 12 7.8 12 72 14 65 2 50 0 47 1.12 CTTCTCCTCTTC chr1 18440086 18440152 trf 12 5.3 12 78 12 62 83 9 7 0 0.82 AAACAAAAAAAA chr1 18440104 18440151 trf 10 4.6 10 86 5 67 87 2 10 0 0.63 AAAAAAAAAG chr1 18440689 18440723 trf 5 6.8 5 100 0 68 0 0 20 79 0.73 GTTTT chr1 18441828 18441857 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 18447734 18447761 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 18448222 18448252 trf 12 2.4 13 94 5 53 20 16 20 43 1.88 TGAACTGTGTTCT chr1 18452666 18452698 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 18455276 18455342 trf 6 12.0 6 78 18 72 30 3 18 48 1.63 TGTATA chr1 18456563 18456596 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 18458080 18458119 trf 2 19.5 2 94 0 69 51 2 0 46 1.14 AT chr1 18458175 18458202 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 18459828 18459874 trf 1 46.0 1 86 0 56 91 8 0 0 0.43 A chr1 18471325 18471370 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 18471714 18471784 trf 2 35.0 2 97 0 131 50 1 48 0 1.09 AG chr1 18480839 18480888 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 18489143 18489211 trf 2 34.0 2 81 0 73 54 5 39 0 1.25 AG chr1 18490178 18490216 trf 12 3.1 12 79 20 51 52 0 21 26 1.47 TGGAATATAAGA chr1 18490748 18490827 trf 2 40.5 2 89 5 81 40 0 8 50 1.34 AT chr1 18492631 18492666 trf 12 2.8 12 95 4 61 17 11 40 31 1.85 TGGTGGTAACTG chr1 18496746 18496786 trf 8 5.0 8 100 0 80 62 12 25 0 1.30 AAAGCAAG chr1 18496783 18496854 trf 4 17.8 4 100 0 142 50 0 49 0 1.00 AAGG chr1 18503402 18503448 trf 8 5.8 8 78 0 56 13 6 47 32 1.68 GTGAGTCT chr1 18504201 18504341 trf 2 71.0 2 90 2 158 49 5 44 1 1.33 GA chr1 18504404 18504431 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 18506480 18506513 trf 2 16.5 2 93 0 57 51 0 48 0 1.00 GA chr1 18513685 18513733 trf 6 7.8 6 86 4 60 2 35 10 52 1.48 TCTCTG chr1 18517709 18517735 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 18521521 18521579 trf 5 12.2 5 98 1 95 20 0 20 58 1.39 TGTAT chr1 18522613 18522661 trf 11 4.3 11 94 5 87 0 0 8 91 0.41 TTTGTTTTTTT chr1 18522617 18522664 trf 1 47.0 1 86 0 67 0 0 6 93 0.34 T chr1 18528758 18528806 trf 9 5.4 9 83 14 64 77 22 0 0 0.78 AAACAAAAC chr1 18529919 18529985 trf 4 16.5 4 93 6 116 27 0 72 0 0.85 GAGG chr1 18532115 18532161 trf 3 15.3 3 100 0 92 67 0 0 32 0.91 ATA chr1 18534597 18534640 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 18534639 18534742 trf 2 51.5 2 94 0 161 51 2 45 0 1.16 GA chr1 18534907 18534942 trf 2 18.0 2 94 5 63 0 0 48 51 1.00 TG chr1 18544510 18544548 trf 5 7.6 5 82 11 51 81 0 2 15 0.80 AATAA chr1 18551704 18551729 trf 12 2.1 12 100 0 50 52 8 8 32 1.60 ACTGTAAATATA chr1 18553995 18554057 trf 1 62.0 1 90 0 97 0 4 0 95 0.28 T chr1 18554692 18554760 trf 5 13.2 5 93 6 118 0 19 0 80 0.70 TTTCT chr1 18554711 18554853 trf 5 28.2 5 90 3 61 0 38 0 61 0.96 TCTTC chr1 18554757 18554816 trf 5 11.8 5 98 0 109 0 57 0 42 0.98 CTTCC chr1 18555350 18555431 trf 2 40.5 2 92 0 126 50 44 0 4 1.23 AC chr1 18556211 18556247 trf 5 7.0 5 90 3 54 75 19 5 0 1.00 AAAAC chr1 18557294 18557335 trf 4 10.5 4 94 5 75 48 0 51 0 1.00 GGAA chr1 18557332 18557378 trf 4 11.5 4 100 0 92 26 0 73 0 0.83 AGGG chr1 18557375 18557443 trf 2 34.0 2 96 0 127 51 0 48 0 1.00 GA chr1 18573073 18573190 trf 2 58.5 2 82 0 135 5 3 44 46 1.44 TG chr1 18577554 18577595 trf 3 13.7 3 100 0 82 31 0 0 68 0.90 TTA chr1 18590003 18590054 trf 2 26.0 2 96 4 95 49 0 50 0 1.00 AG chr1 18591456 18591483 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 18591482 18591527 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 18593050 18593115 trf 2 32.5 2 90 0 85 1 6 47 44 1.37 TG chr1 18595889 18595931 trf 5 8.8 5 89 5 61 0 0 16 83 0.65 TTTTG chr1 18597135 18597186 trf 2 25.5 2 93 0 84 47 49 1 1 1.24 AC chr1 18597383 18597431 trf 4 12.2 4 91 4 80 47 0 27 25 1.52 AGAT chr1 18597428 18597475 trf 4 11.8 4 95 0 85 51 21 0 27 1.48 ATAC chr1 18598013 18598070 trf 2 29.0 2 96 3 107 49 0 50 0 1.00 GA chr1 18601233 18601279 trf 2 23.0 2 95 0 83 47 52 0 0 1.00 AC chr1 18601279 18601323 trf 2 22.0 2 80 0 52 52 6 40 0 1.28 GA chr1 18601284 18601323 trf 12 3.2 12 88 0 60 51 7 41 0 1.31 AGAGAGACAGAG chr1 18601545 18601810 trf 9 30.9 9 75 19 152 0 52 0 47 1.00 TCTCTCTCC chr1 18601545 18601810 trf 5 52.3 6 66 31 169 0 52 0 47 1.00 TCTCTC chr1 18601641 18601723 trf 3 27.0 3 87 2 119 0 62 0 37 0.96 CTC chr1 18601721 18601769 trf 3 16.0 3 100 0 96 0 33 0 66 0.92 TCT chr1 18606978 18607019 trf 2 20.5 2 94 0 73 2 0 46 51 1.14 TG chr1 18612123 18612171 trf 2 23.5 2 78 4 51 50 41 0 8 1.33 AC chr1 18612611 18612650 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 18612651 18612692 trf 2 20.5 2 100 0 82 48 0 51 0 1.00 GA chr1 18614007 18614034 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 18615544 18615763 trf 2 110.0 2 90 0 350 47 0 51 0 1.07 AG chr1 18619191 18619249 trf 2 29.0 2 96 0 107 1 0 48 50 1.11 TG chr1 18622553 18622586 trf 11 2.8 12 90 4 50 33 9 3 54 1.47 TTTTAACATATT chr1 18622618 18622663 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 18625522 18625556 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 18625556 18625631 trf 4 19.0 4 91 2 107 46 0 28 25 1.53 GATA chr1 18625622 18625706 trf 6 13.8 6 88 2 78 41 0 39 19 1.51 AGATAG chr1 18625934 18625963 trf 3 9.7 3 100 0 58 34 0 0 65 0.93 TAT chr1 18628362 18628428 trf 2 33.0 2 96 0 123 50 1 0 48 1.10 TA chr1 18632994 18633023 trf 3 9.7 3 100 0 58 0 31 0 68 0.89 TTC chr1 18633021 18633050 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 18635959 18635989 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 18636300 18636343 trf 7 6.1 7 86 0 59 32 51 0 16 1.45 CCCATCA chr1 18636740 18636776 trf 5 6.8 5 93 6 54 0 0 22 77 0.76 TTTTG chr1 18641354 18641403 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 18641809 18641861 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 AT chr1 18652881 18652931 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 18656849 18656888 trf 1 39.0 1 100 0 78 100 0 0 0 0.00 A chr1 18658208 18658249 trf 6 6.8 6 97 0 73 53 12 0 34 1.38 TAATAC chr1 18665735 18665779 trf 2 22.0 2 90 0 70 50 45 0 4 1.22 CA chr1 18672645 18672710 trf 4 16.0 4 87 12 73 80 20 0 0 0.72 CAAA chr1 18672646 18672716 trf 5 14.8 5 82 14 71 81 18 0 0 0.69 AAACA chr1 18678392 18678429 trf 4 9.2 4 100 0 74 75 0 0 24 0.80 AATA chr1 18679940 18680178 trf 6 44.0 5 76 11 86 48 0 50 0 1.10 GGAAG chr1 18679942 18680156 trf 6 38.0 6 81 11 174 50 0 47 0 1.10 AAGGGA chr1 18680153 18680330 trf 5 36.0 5 83 7 193 33 0 66 0 0.97 GGAGA chr1 18680347 18680413 trf 6 10.7 6 93 6 114 83 0 16 0 0.65 AAAGAA chr1 18680415 18680507 trf 5 18.4 5 98 0 130 33 0 66 0 0.92 GAGGA chr1 18680524 18680567 trf 6 7.0 6 94 5 77 83 0 16 0 0.64 AAAGAA chr1 18680567 18680630 trf 5 12.6 5 98 0 108 23 0 76 0 0.79 GAGGG chr1 18680618 18680707 trf 5 18.2 5 93 4 137 60 0 39 0 0.97 AGAGA chr1 18692266 18692325 trf 4 13.8 4 79 10 55 71 28 0 0 0.87 AAAC chr1 18694704 18694743 trf 8 4.9 8 83 0 51 33 15 5 46 1.68 TATCTATA chr1 18694762 18694837 trf 12 6.4 12 89 6 118 48 8 5 38 1.56 TATATGTACAAA chr1 18695734 18695782 trf 3 15.7 3 95 4 87 66 0 0 33 0.92 ATA chr1 18695784 18695860 trf 3 25.3 3 97 0 143 65 0 34 0 0.93 AGA chr1 18697030 18697102 trf 7 10.9 7 96 3 116 0 0 15 84 0.62 TTTTGTT chr1 18697030 18697100 trf 1 70.0 1 71 0 50 0 0 14 85 0.59 T chr1 18697436 18697491 trf 2 27.5 2 100 0 110 50 0 0 49 1.00 AT chr1 18697649 18697683 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 18704888 18704967 trf 5 15.8 5 97 0 149 58 0 41 0 0.98 AGGAA chr1 18704970 18705084 trf 5 22.8 5 83 3 113 29 0 70 0 0.88 GGGAG chr1 18705459 18705485 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 18712176 18712238 trf 2 31.0 2 96 0 115 51 0 48 0 1.00 GA chr1 18724074 18724121 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 18728072 18728117 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 18728709 18728788 trf 2 39.5 2 94 0 140 49 48 0 2 1.14 AC chr1 18728787 18728820 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 18728922 18728971 trf 2 24.5 2 95 0 89 0 0 46 53 1.00 TG chr1 18735065 18735099 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 18736878 18736905 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 18737342 18737382 trf 3 13.3 3 89 0 62 35 0 27 37 1.57 TGA chr1 18737661 18737714 trf 2 26.5 2 96 0 97 50 0 49 0 1.00 GA chr1 18745916 18745948 trf 12 2.7 12 95 0 55 0 0 25 75 0.81 TTTTTGTTGTTG chr1 18746519 18746565 trf 2 23.0 2 90 0 74 4 0 47 47 1.21 GT chr1 18748131 18748200 trf 5 14.4 5 85 8 83 0 0 20 79 0.73 GTTTT chr1 18750431 18750497 trf 2 33.0 2 100 0 132 50 0 50 0 1.00 GA chr1 18754555 18754592 trf 4 9.5 4 88 5 58 0 0 18 81 0.70 TTGT chr1 18768319 18768371 trf 2 26.0 2 96 0 95 50 48 1 0 1.12 CA chr1 18772211 18772259 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 18785064 18785125 trf 8 7.6 8 94 0 95 50 4 44 0 1.23 AGAGAGAG chr1 18785064 18785125 trf 6 10.2 6 94 0 95 50 4 44 0 1.23 AGAGAG chr1 18785122 18785209 trf 4 22.2 4 95 4 160 75 0 24 0 0.80 AGAA chr1 18793930 18794156 trf 4 56.5 4 90 0 263 0 34 0 65 0.93 TCTT chr1 18794924 18794953 trf 3 9.7 3 100 0 58 0 0 31 68 0.89 TTG chr1 18800443 18800484 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 18801632 18801688 trf 2 28.0 2 96 0 103 48 0 1 50 1.11 TA chr1 18814183 18814218 trf 4 8.8 4 93 0 61 71 0 2 25 1.00 AATA chr1 18823938 18823965 trf 12 2.2 12 100 0 54 0 7 48 44 1.31 TGTGTGTGTGCG chr1 18823980 18824047 trf 2 33.5 2 93 0 116 1 1 49 47 1.19 TG chr1 18824624 18824651 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 18827587 18827750 trf 5 34.2 5 97 2 270 62 0 37 0 0.95 AAGGA chr1 18831814 18831924 trf 5 21.6 5 86 6 96 1 25 0 72 0.94 TTTCT chr1 18836000 18836041 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 18837285 18837362 trf 1 77.0 1 78 0 73 88 11 0 0 0.52 A chr1 18841309 18841343 trf 5 6.8 5 100 0 68 0 0 17 82 0.67 TTTTG chr1 18845044 18845095 trf 2 25.5 2 83 0 66 0 50 0 49 1.00 CT chr1 18847987 18848018 trf 4 7.8 4 100 0 62 25 0 22 51 1.48 ATTG chr1 18856595 18856651 trf 2 28.0 2 92 0 94 3 48 0 48 1.19 TC chr1 18861954 18861995 trf 3 13.3 3 94 5 73 68 0 0 31 0.90 AAT chr1 18867666 18867703 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 18868034 18868092 trf 2 29.0 2 92 0 89 5 0 46 48 1.24 GT chr1 18869527 18869640 trf 6 18.8 6 100 0 226 33 0 66 0 0.92 GAGAGG chr1 18871935 18871989 trf 2 27.0 2 96 0 99 51 48 0 0 1.00 AC chr1 18879190 18879232 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 18883204 18883231 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 18884942 18884967 trf 4 6.2 4 100 0 50 28 0 0 72 0.86 ATTT chr1 18894290 18894411 trf 5 23.0 5 71 18 52 1 0 22 76 0.88 GTTTT chr1 18894295 18894339 trf 6 7.5 6 87 10 56 0 0 29 70 0.88 TTTTGG chr1 18894317 18894390 trf 7 10.3 7 78 11 60 0 0 19 80 0.71 TTTTGTT chr1 18902453 18902508 trf 2 27.5 2 96 0 101 0 47 0 52 1.00 TC chr1 18904538 18904597 trf 2 29.5 2 100 0 118 0 50 0 49 1.00 CT chr1 18907139 18907188 trf 8 6.1 8 82 0 53 0 48 4 46 1.20 CTCTCTCT chr1 18907186 18907216 trf 3 10.0 3 92 0 51 36 33 0 30 1.58 TCA chr1 18907225 18907366 trf 3 46.3 3 84 5 167 0 36 0 63 0.95 TCT chr1 18917020 18917046 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 18925658 18925689 trf 12 2.6 12 94 0 53 25 0 38 35 1.56 TGATGGTGATGA chr1 18934370 18934403 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 18934459 18934495 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 18934494 18934527 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 18934590 18934627 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 18934685 18934733 trf 2 24.0 2 78 0 51 45 43 4 6 1.48 CA chr1 18938875 18938923 trf 4 12.0 4 95 0 87 0 25 22 52 1.48 TCTG chr1 18948640 18948668 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 18951705 18951748 trf 4 10.8 4 94 0 77 25 2 0 72 0.97 ATTT chr1 18955540 18955570 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 18955569 18955612 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 18958114 18958167 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 18959606 18959632 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 TC chr1 18959773 18959824 trf 4 12.8 4 82 0 66 3 25 23 47 1.69 TGTC chr1 18960746 18960798 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 18961396 18961443 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 18964487 18964539 trf 4 13.0 4 100 0 104 25 0 0 75 0.81 ATTT chr1 18968090 18968131 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 18968130 18968182 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 AT chr1 18972272 18972415 trf 4 35.5 4 92 1 169 66 0 33 0 0.92 AAGA chr1 18982475 18982500 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 18985475 18985545 trf 4 17.5 4 96 0 104 44 0 30 25 1.55 ATAG chr1 18988468 18988606 trf 6 21.7 6 89 7 87 0 0 44 55 1.05 TTGGTT chr1 18988492 18988607 trf 6 19.3 6 91 7 155 0 0 45 53 1.06 GGTTTG chr1 18991327 18991378 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 18997455 18997508 trf 2 26.5 2 100 0 106 49 0 50 0 1.00 GA chr1 19000354 19000386 trf 2 16.0 2 93 0 55 3 0 46 50 1.17 TG chr1 19021017 19021061 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 19021778 19021807 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 19027591 19027768 trf 2 89.0 2 90 1 266 45 0 54 0 0.99 GA chr1 19028426 19028462 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 19028461 19028515 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 AG chr1 19028580 19028618 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 19029315 19029350 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 19029557 19029620 trf 2 31.5 2 86 0 90 3 1 46 49 1.27 GT chr1 19030546 19030580 trf 11 3.1 11 84 16 52 70 11 0 17 1.16 TAAATAACAAA chr1 19031234 19031284 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 19034153 19034223 trf 4 17.5 4 96 0 131 77 0 22 0 0.78 AAAG chr1 19035749 19035799 trf 8 6.2 8 78 17 50 0 0 18 82 0.68 TTGTTTTT chr1 19035752 19035808 trf 11 5.2 11 76 4 51 1 0 14 83 0.72 TTTTTTTGTTT chr1 19038357 19038422 trf 3 21.7 3 100 0 130 66 0 33 0 0.92 GAA chr1 19038420 19038507 trf 3 29.0 3 100 0 174 33 0 66 0 0.92 GAG chr1 19038923 19038979 trf 2 28.0 2 96 0 103 0 1 50 48 1.11 GT chr1 19039414 19039455 trf 5 8.4 5 89 5 66 56 0 0 43 0.99 ATAAT chr1 19039742 19039853 trf 4 27.8 4 94 0 186 50 0 27 21 1.49 TAGA chr1 19039854 19039883 trf 10 3.0 10 95 5 51 51 6 0 41 1.28 ACATATATAT chr1 19043742 19043791 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 19049272 19049299 trf 3 9.0 3 100 0 54 33 0 0 66 0.92 TTA chr1 19057939 19058059 trf 4 29.2 4 91 5 132 66 0 33 0 0.92 AAAG chr1 19066805 19066916 trf 2 55.5 2 88 0 159 53 43 0 2 1.21 AC chr1 19067970 19068017 trf 2 23.5 2 95 0 85 2 0 51 46 1.13 GT chr1 19071182 19071218 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 19076688 19076730 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 19077204 19077265 trf 4 15.8 4 89 6 99 49 0 24 26 1.51 TAGA chr1 19077266 19077317 trf 4 12.8 4 79 8 59 47 19 1 31 1.61 ATAC chr1 19081228 19081283 trf 4 13.8 4 100 0 110 0 23 25 50 1.49 TTGC chr1 19084322 19084367 trf 2 22.5 2 90 0 72 48 46 2 2 1.26 AC chr1 19084688 19084717 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 19085798 19085856 trf 2 29.0 2 96 0 107 0 1 50 48 1.11 GT chr1 19095421 19095541 trf 10 11.2 10 72 15 80 45 35 13 5 1.65 CACAGACACA chr1 19095430 19095535 trf 12 9.4 12 69 12 55 45 35 14 4 1.66 ACACAGGCACAC chr1 19097535 19097567 trf 4 8.0 4 100 0 64 75 0 25 0 0.81 AAGA chr1 19097564 19097598 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 19097595 19097635 trf 4 10.0 4 100 0 80 25 0 75 0 0.81 GAGG chr1 19097796 19097836 trf 4 10.0 4 100 0 80 75 0 25 0 0.81 AAAG chr1 19097835 19097888 trf 4 13.2 4 100 0 106 24 0 75 0 0.80 GGAG chr1 19097885 19097940 trf 4 13.8 4 100 0 110 49 0 50 0 1.00 AGGA chr1 19097941 19097998 trf 4 14.2 4 100 0 114 75 0 24 0 0.80 AAGA chr1 19101565 19101591 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 19101824 19101856 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 19101855 19101906 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 19102008 19102036 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 19103358 19103385 trf 12 2.2 12 100 0 54 0 11 66 22 1.22 GGCGGTGGTGGT chr1 19104942 19104990 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 19104989 19105046 trf 2 28.5 2 92 0 96 45 50 0 3 1.18 CA chr1 19111447 19111495 trf 11 4.3 11 80 15 62 79 0 20 0 0.74 AAAAAAGAAAG chr1 19111450 19111497 trf 4 12.2 4 78 17 55 76 0 23 0 0.78 AAAG chr1 19111805 19111834 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 19113599 19113660 trf 4 15.8 4 77 13 65 0 1 26 72 0.94 TTTG chr1 19114181 19114218 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TTAT chr1 19114215 19114250 trf 4 8.8 4 100 0 70 25 22 0 51 1.48 ATTC chr1 19121203 19121237 trf 4 8.5 4 93 0 59 23 2 0 73 0.97 TTTA chr1 19123329 19123384 trf 2 27.5 2 96 0 101 0 49 0 50 1.00 CT chr1 19134985 19135028 trf 12 3.7 11 81 9 50 0 0 18 81 0.69 GTTTGTTTTTT chr1 19143343 19143376 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 19147014 19147051 trf 2 19.0 2 94 5 67 48 51 0 0 1.00 CA chr1 19147050 19147095 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 19147487 19147756 trf 4 64.2 4 97 2 421 71 0 28 0 0.87 GAAA chr1 19147775 19147841 trf 2 33.0 2 96 0 123 48 0 51 0 1.00 GA chr1 19149116 19149175 trf 5 11.8 5 96 0 109 20 1 20 57 1.49 ATTGT chr1 19151456 19151484 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 19153325 19153404 trf 6 13.2 6 78 0 68 6 44 1 48 1.36 TCTTCC chr1 19157105 19157147 trf 8 5.5 8 91 8 70 0 0 9 90 0.45 TTTTGTTT chr1 19157105 19157148 trf 1 43.0 1 80 0 50 0 0 9 90 0.45 T chr1 19161604 19161654 trf 3 17.3 3 80 15 61 4 0 26 70 1.05 TGT chr1 19165036 19165416 trf 12 30.4 12 86 5 293 42 0 57 0 0.98 AGGAAGGAAGGG chr1 19176276 19176342 trf 6 11.0 6 100 0 132 33 50 0 16 1.46 ACCCTA chr1 19179346 19179398 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 19179400 19179484 trf 2 41.5 2 72 7 53 51 9 36 2 1.48 GA chr1 19181893 19181923 trf 4 7.5 4 100 0 60 0 50 0 50 1.00 TCCT chr1 19182885 19182954 trf 2 34.5 2 80 0 57 7 5 37 49 1.55 TG chr1 19182899 19182962 trf 12 5.4 12 81 7 76 9 6 33 50 1.60 TGTGTGTGTATC chr1 19182915 19182962 trf 10 4.3 10 80 19 58 10 8 29 51 1.66 TGTGTATCTG chr1 19183444 19183487 trf 4 10.8 4 100 0 86 51 0 23 25 1.49 ATAG chr1 19185819 19185869 trf 4 12.5 4 100 0 100 50 0 26 24 1.50 GATA chr1 19185866 19185899 trf 4 8.2 4 100 0 66 51 24 24 0 1.48 AGAC chr1 19196282 19196313 trf 2 16.0 2 93 6 55 48 51 0 0 1.00 AC chr1 19197662 19197698 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 19197701 19197764 trf 2 31.5 2 96 0 117 47 0 50 1 1.10 GA chr1 19199310 19199351 trf 2 20.5 2 90 9 66 51 46 0 2 1.14 AC chr1 19199703 19200120 trf 11 37.9 11 76 5 306 32 12 40 14 1.83 GTGAACAGGGT chr1 19204808 19204893 trf 4 21.2 4 92 0 143 0 48 0 51 1.00 TTCC chr1 19204883 19205050 trf 4 43.0 4 81 8 184 0 26 3 68 1.10 CTTT chr1 19206528 19206567 trf 4 9.8 4 94 0 69 23 0 25 51 1.49 ATGT chr1 19208918 19208959 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 19210615 19210674 trf 2 29.5 2 100 0 118 49 0 50 0 1.00 GA chr1 19211488 19211534 trf 8 5.4 8 80 14 56 82 15 0 2 0.76 AAAAACAA chr1 19212488 19212543 trf 2 27.5 2 100 0 110 0 49 0 50 1.00 TC chr1 19212542 19212595 trf 2 26.5 2 96 0 97 1 0 47 50 1.12 TG chr1 19213605 19213794 trf 10 18.9 10 96 0 189 0 44 0 55 0.99 TCTCCTCTTT chr1 19213729 19213867 trf 10 15.3 10 78 20 162 0 45 0 54 0.99 CTCTCTCTCT chr1 19213729 19213852 trf 10 11.9 10 94 5 178 0 43 0 56 0.99 CTCTTCTCTT chr1 19215561 19215637 trf 2 38.0 2 94 0 134 1 1 48 48 1.18 GT chr1 19217235 19217299 trf 2 32.0 2 93 0 110 50 46 1 1 1.20 AC chr1 19217707 19217747 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 19218450 19218501 trf 2 26.0 2 88 11 79 1 0 49 49 1.12 TG chr1 19222375 19222422 trf 3 15.3 3 91 4 76 34 2 0 63 1.06 TAT chr1 19222696 19222783 trf 8 11.1 8 81 4 97 50 11 36 1 1.46 AGAGACAG chr1 19222696 19222779 trf 6 13.8 6 87 0 76 50 10 37 1 1.45 AGAGAG chr1 19222698 19222785 trf 12 7.1 12 83 5 102 50 12 35 1 1.48 AGAGAGAGAGAC chr1 19223527 19223574 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 19226294 19226330 trf 11 3.5 11 92 7 58 0 0 83 16 0.65 GGGGTGGGGGT chr1 19226294 19226330 trf 5 7.0 5 87 6 54 0 0 83 16 0.65 GGGGT chr1 19226685 19226736 trf 2 25.5 2 95 0 93 50 47 0 1 1.12 AC chr1 19229956 19230050 trf 4 23.5 4 97 0 134 43 0 6 50 1.28 TATA chr1 19232367 19232414 trf 2 23.5 2 100 0 94 0 51 0 48 1.00 CT chr1 19233506 19233594 trf 2 44.0 2 97 0 167 0 1 48 50 1.08 TG chr1 19233593 19233658 trf 2 32.5 2 93 0 112 46 0 52 1 1.10 GA chr1 19235862 19235906 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 19241715 19241852 trf 5 26.6 5 94 5 238 0 38 0 61 0.96 TTCCT chr1 19243126 19243158 trf 6 5.5 6 96 3 57 0 0 15 84 0.63 TTTTGT chr1 19243126 19243161 trf 11 3.1 11 92 8 61 0 0 17 82 0.66 TTTTGTTTTGT chr1 19243188 19243273 trf 4 21.8 4 92 4 147 27 24 0 48 1.52 TATC chr1 19247242 19247279 trf 11 3.4 11 100 0 74 8 10 43 37 1.69 TGCTATGTGGG chr1 19248154 19248203 trf 12 4.1 12 81 7 64 61 34 0 4 1.15 AACAACCAACCA chr1 19248157 19248237 trf 12 5.8 13 72 20 56 63 31 0 5 1.15 AACCAAACAAACA chr1 19252993 19253063 trf 4 17.5 4 96 0 122 0 45 0 54 0.99 TTCC chr1 19253064 19253140 trf 6 12.7 6 91 0 98 0 42 7 50 1.31 CTCTCT chr1 19253064 19253140 trf 8 9.5 8 88 0 98 0 42 7 50 1.31 CTCTCTCT chr1 19253954 19254060 trf 5 20.8 5 90 1 158 80 16 3 0 0.86 CAAAA chr1 19254356 19254395 trf 2 19.5 2 94 0 69 51 46 2 0 1.14 AC chr1 19256632 19256689 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 19257972 19258046 trf 4 18.5 4 73 15 55 44 47 0 8 1.32 AACC chr1 19258388 19258435 trf 4 11.8 4 100 0 94 25 23 0 51 1.49 TATC chr1 19260668 19260933 trf 8 38.3 6 93 6 183 36 13 50 0 1.42 GAGGCA chr1 19260703 19260886 trf 8 23.2 8 90 9 297 37 12 50 0 1.40 AGAGGCAG chr1 19261008 19261081 trf 4 17.5 4 76 8 58 65 28 2 2 1.20 ACAA chr1 19270682 19270832 trf 4 37.5 4 84 5 169 0 32 0 66 0.97 TCTT chr1 19274352 19274390 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 19278173 19278227 trf 3 18.0 3 88 0 72 27 1 3 66 1.19 ATT chr1 19288137 19288222 trf 2 42.5 2 93 0 143 50 45 1 2 1.22 AC chr1 19290990 19291083 trf 10 9.7 10 88 6 108 49 39 9 1 1.43 ACACACAGAC chr1 19290990 19291086 trf 8 11.5 8 85 4 111 48 40 9 1 1.42 ACACACAG chr1 19293670 19293718 trf 2 24.0 2 82 0 60 0 58 0 41 0.98 TC chr1 19293679 19293810 trf 4 31.5 4 87 7 145 0 65 0 34 0.93 CTCC chr1 19293809 19293877 trf 4 17.0 4 95 4 120 0 26 0 73 0.83 TTCT chr1 19296232 19296289 trf 4 14.2 4 100 0 114 24 24 0 50 1.49 TCTA chr1 19297141 19297190 trf 2 24.5 2 95 0 89 48 2 0 48 1.12 TA chr1 19297210 19297244 trf 10 3.4 10 87 0 50 50 8 0 41 1.34 ATATATACAT chr1 19308115 19308145 trf 2 15.0 2 92 0 51 53 46 0 0 1.00 AC chr1 19316805 19316847 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 19316846 19316904 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 19319529 19319770 trf 5 48.2 5 92 2 297 0 63 0 36 0.95 CTCTC chr1 19319738 19319793 trf 12 4.4 12 86 4 74 0 50 0 49 1.00 CTCTCCCTTTCT chr1 19319795 19319867 trf 4 18.0 4 100 0 144 0 25 0 75 0.81 TCTT chr1 19320873 19320940 trf 2 34.5 2 76 5 57 46 8 1 43 1.44 TA chr1 19321941 19322030 trf 4 22.2 4 92 0 106 0 33 0 66 0.92 TTTC chr1 19322030 19322061 trf 4 7.8 4 100 0 62 0 74 0 25 0.82 CTCC chr1 19332585 19332627 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 19333240 19333290 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 19343514 19343543 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 19345720 19345791 trf 4 17.8 4 100 0 142 0 50 0 49 1.00 CCTT chr1 19345788 19345832 trf 4 11.0 4 100 0 88 0 75 0 25 0.81 CCTC chr1 19345830 19345908 trf 4 19.5 4 100 0 156 0 25 0 74 0.82 TCTT chr1 19348605 19348718 trf 2 56.5 2 93 6 194 1 48 0 49 1.11 TC chr1 19349177 19349211 trf 12 2.9 12 91 4 52 58 8 0 32 1.29 ATAAATATATAC chr1 19349981 19350049 trf 4 17.2 4 93 3 102 50 4 25 20 1.67 AGAT chr1 19350868 19350972 trf 4 26.8 4 94 5 187 0 25 0 75 0.81 TTTC chr1 19351206 19351255 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 19353284 19353356 trf 2 36.0 2 100 0 144 0 50 0 50 1.00 TC chr1 19361023 19361069 trf 3 15.3 3 100 0 92 67 32 0 0 0.91 AAC chr1 19369696 19369726 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 19380994 19381027 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 19384055 19384175 trf 12 9.7 12 75 7 105 50 6 42 0 1.34 GAGAGAGACAGA chr1 19384072 19384194 trf 2 61.0 2 82 0 127 53 4 41 0 1.26 AG chr1 19390230 19390293 trf 2 32.0 2 77 3 65 44 3 4 47 1.40 TA chr1 19391232 19391257 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 AAAT chr1 19393379 19393411 trf 12 2.7 12 100 0 64 37 15 21 25 1.93 AATAGACTGGCT chr1 19405008 19405052 trf 1 44.0 1 83 0 52 90 4 2 2 0.58 A chr1 19408547 19408573 trf 5 5.2 5 100 0 52 80 19 0 0 0.71 AAAAC chr1 19425432 19425555 trf 3 43.3 3 80 6 71 0 63 0 36 0.95 TCC chr1 19426560 19426593 trf 2 16.5 2 100 0 66 51 0 0 48 1.00 AT chr1 19427035 19427085 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 19427207 19427378 trf 6 28.2 6 69 11 89 52 29 2 15 1.56 ATACAC chr1 19431280 19431310 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 19431446 19431474 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 19441430 19441472 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 19441546 19441593 trf 7 6.9 7 79 13 53 80 19 0 0 0.70 AAAAAAC chr1 19441546 19441572 trf 8 3.2 8 100 0 52 76 23 0 0 0.78 AAAAACCA chr1 19443816 19443841 trf 11 2.3 11 100 0 50 0 8 0 92 0.40 TTTTTTTTTTC chr1 19451743 19451770 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 19456789 19456835 trf 12 3.9 12 80 5 58 8 21 21 47 1.77 CTATCTGTCTGT chr1 19459773 19459805 trf 7 4.6 7 92 0 55 90 0 9 0 0.45 AAAAAAG chr1 19470694 19470759 trf 2 32.5 2 96 0 121 50 47 0 1 1.10 AC chr1 19471701 19471771 trf 5 14.0 5 96 0 131 38 20 0 41 1.52 TACTA chr1 19472256 19472300 trf 4 11.2 4 90 4 72 0 0 20 79 0.73 TTTG chr1 19476176 19476208 trf 4 8.0 4 92 0 55 71 28 0 0 0.86 CAAA chr1 19480717 19480772 trf 3 18.0 3 96 3 101 0 0 32 67 0.91 TTG chr1 19481071 19481174 trf 4 25.8 4 97 0 179 0 28 0 71 0.86 TTCT chr1 19483643 19483688 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 19500560 19500615 trf 8 6.8 8 75 19 51 21 36 3 38 1.71 TCTATCCA chr1 19500607 19500652 trf 11 4.0 11 80 5 54 24 26 2 46 1.64 CATCTATCTAT chr1 19501049 19501095 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 AG chr1 19502522 19502553 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 19502944 19502975 trf 4 7.8 4 100 0 62 25 25 0 48 1.52 CTAT chr1 19505057 19505101 trf 2 22.0 2 95 0 79 0 2 50 47 1.13 TG chr1 19512890 19512934 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 TTTA chr1 19517476 19517520 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 19519862 19519914 trf 4 13.0 4 100 0 104 0 50 0 50 1.00 CCTT chr1 19519911 19519949 trf 4 9.5 4 94 0 67 0 23 0 76 0.79 CTTT chr1 19530017 19530062 trf 4 11.2 4 100 0 90 24 0 0 75 0.80 TTTA chr1 19535754 19535824 trf 5 14.2 5 98 1 133 18 0 40 41 1.51 TGTGA chr1 19537402 19537586 trf 6 30.7 6 79 4 147 45 41 8 3 1.53 ACACAC chr1 19537402 19537586 trf 4 46.0 4 75 4 147 45 41 8 3 1.53 ACAC chr1 19538159 19538252 trf 3 31.0 3 100 0 186 0 33 0 66 0.92 TTC chr1 19542151 19542258 trf 1 107.0 1 79 0 115 0 4 5 89 0.58 T chr1 19544564 19544613 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 19548169 19548247 trf 7 12.5 6 79 16 63 82 16 0 1 0.75 AAACAA chr1 19548182 19548247 trf 7 9.7 7 80 9 64 80 18 0 1 0.80 AAAAACC chr1 19570510 19570540 trf 10 2.8 11 90 10 53 36 0 0 63 0.95 ATTTATATTAT chr1 19572173 19572200 trf 4 6.8 4 100 0 54 51 0 0 48 1.00 TAAT chr1 19572718 19572786 trf 4 17.2 4 95 3 120 26 25 0 48 1.51 TCTA chr1 19577553 19577578 trf 4 6.2 4 100 0 50 28 0 0 72 0.86 ATTT chr1 19581391 19581435 trf 2 22.0 2 95 0 79 50 47 2 0 1.13 CA chr1 19582341 19582399 trf 4 13.8 4 78 10 62 34 0 65 0 0.93 GAGG chr1 19584440 19584481 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 19584491 19584630 trf 6 23.2 6 98 0 179 41 0 58 0 0.98 GAGAGA chr1 19589591 19589616 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 19591325 19591377 trf 2 26.0 2 96 0 95 1 0 48 50 1.12 TG chr1 19595787 19595823 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 19597049 19597082 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 19597691 19597726 trf 3 11.7 3 100 0 70 65 34 0 0 0.93 CAA chr1 19601623 19601654 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 19601657 19601704 trf 2 23.5 2 100 0 94 51 0 0 48 1.00 AT chr1 19601703 19601728 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 19604508 19604559 trf 2 25.5 2 100 0 102 49 0 0 50 1.00 TA chr1 19605141 19605197 trf 6 9.2 6 84 3 58 57 39 1 1 1.20 CCAAAA chr1 19609423 19609458 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 19610216 19610299 trf 4 20.8 4 90 4 114 1 26 1 71 1.01 TTCT chr1 19616818 19616883 trf 4 16.2 4 93 0 76 3 49 6 41 1.43 TCTC chr1 19618827 19618856 trf 6 4.8 6 100 0 58 82 17 0 0 0.66 CAAAAA chr1 19619417 19619463 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 CT chr1 19619955 19620033 trf 2 39.0 2 94 0 138 52 0 47 0 1.00 GA chr1 19640990 19641047 trf 2 28.5 2 89 0 87 0 49 3 47 1.18 CT chr1 19641603 19641648 trf 2 23.0 2 95 4 83 0 51 0 48 1.00 TC chr1 19641647 19641673 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 19643195 19643260 trf 6 10.8 6 84 0 76 1 35 10 52 1.46 TCTCTG chr1 19644210 19644257 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 19650002 19650065 trf 8 8.0 8 84 8 69 85 14 0 0 0.59 AAAAAACA chr1 19650002 19650063 trf 1 61.0 1 73 0 50 86 13 0 0 0.56 A chr1 19665623 19665660 trf 4 9.2 4 100 0 74 24 0 75 0 0.80 GAGG chr1 19665661 19665710 trf 2 24.5 2 100 0 98 48 0 51 0 1.00 GA chr1 19666610 19666644 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 19666725 19666751 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 19668595 19668631 trf 2 18.0 2 94 0 63 2 0 50 47 1.15 TG chr1 19668704 19668729 trf 11 2.3 11 100 0 50 16 12 16 56 1.68 CTTTAGTTATG chr1 19672842 19672909 trf 2 33.5 2 94 5 118 1 47 0 50 1.10 TC chr1 19675704 19675776 trf 10 7.0 10 75 6 63 47 15 0 37 1.46 ATACATATAT chr1 19679162 19679275 trf 10 11.3 10 81 3 120 0 53 0 45 1.06 TCTCTCTCTC chr1 19679162 19679275 trf 4 28.2 4 87 3 120 0 53 0 45 1.06 TCTC chr1 19683282 19683346 trf 2 32.0 2 93 0 110 50 3 0 46 1.17 AT chr1 19683370 19683411 trf 4 10.2 4 100 0 82 51 24 0 24 1.49 ACAT chr1 19694744 19695117 trf 4 93.2 4 88 3 392 65 0 33 0 0.98 AAAG chr1 19699569 19699615 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 19719112 19719178 trf 2 33.0 2 93 0 114 1 0 46 51 1.10 GT chr1 19732097 19732174 trf 4 20.0 4 71 7 61 24 27 0 48 1.52 ATCT chr1 19735679 19735761 trf 4 21.5 4 87 9 100 19 0 30 50 1.48 ATGT chr1 19735832 19735866 trf 2 17.0 2 93 0 59 2 0 47 50 1.16 GT chr1 19738671 19738721 trf 8 6.2 8 80 0 55 48 36 12 4 1.59 CAGACACA chr1 19738890 19738919 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 19743519 19743591 trf 5 14.4 5 98 0 135 0 37 0 62 0.95 TTCCT chr1 19750256 19750305 trf 4 12.2 4 100 0 98 51 0 24 24 1.49 ATAG chr1 19754713 19754751 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 19761247 19761293 trf 2 23.0 2 95 0 83 52 47 0 0 1.00 CA chr1 19766856 19766931 trf 12 6.6 12 72 17 61 41 2 21 34 1.67 GTATGTAAATAA chr1 19775243 19775309 trf 2 33.0 2 90 0 105 4 0 45 50 1.22 GT chr1 19779192 19779223 trf 4 7.8 4 100 0 62 74 0 25 0 0.82 GAAA chr1 19779620 19779654 trf 5 6.6 5 96 3 59 76 0 0 23 0.79 AATAA chr1 19780067 19780097 trf 5 6.0 5 100 0 60 0 0 20 80 0.72 GTTTT chr1 19780857 19780882 trf 4 6.2 4 100 0 50 24 0 0 76 0.80 TTTA chr1 19783890 19783935 trf 5 9.0 5 100 0 90 80 20 0 0 0.72 AAAAC chr1 19789312 19789364 trf 7 7.0 7 79 12 50 0 1 11 86 0.65 TGTTTTT chr1 19790278 19790466 trf 4 47.0 4 81 6 184 1 31 1 65 1.09 CTTT chr1 19793967 19794034 trf 2 34.0 2 90 3 109 0 2 47 49 1.16 GT chr1 19794769 19794805 trf 12 3.0 12 100 0 72 91 8 0 0 0.41 AAAAAAAAAAAC chr1 19794769 19794804 trf 1 35.0 1 88 0 52 94 5 0 0 0.32 A chr1 19795497 19795598 trf 2 50.5 2 93 0 175 48 0 50 0 1.07 AG chr1 19797308 19797337 trf 5 5.8 5 100 0 58 20 0 0 79 0.74 TTATT chr1 19806114 19806141 trf 4 6.8 4 100 0 54 51 0 22 25 1.48 ATAG chr1 19807523 19807647 trf 4 30.8 4 86 4 61 0 59 0 39 1.03 CTTC chr1 19807562 19807645 trf 12 6.9 12 92 0 85 0 66 0 33 0.92 TCCTTCCTTCCC chr1 19807562 19807647 trf 8 10.6 8 94 0 89 0 64 0 35 0.94 TCCTTCCC chr1 19807644 19807712 trf 4 17.0 4 100 0 136 0 25 0 75 0.81 CTTT chr1 19811995 19812025 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 19813963 19814017 trf 4 13.5 4 100 0 108 50 0 24 25 1.50 TAGA chr1 19820746 19820778 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 19825133 19825171 trf 3 12.3 3 94 5 67 65 0 2 31 1.06 AAT chr1 19828398 19828455 trf 10 5.4 11 76 15 50 80 17 0 1 0.79 AAAAACAAAAC chr1 19829010 19829058 trf 4 12.0 4 100 0 96 50 0 25 25 1.50 GATA chr1 19829055 19829102 trf 4 11.8 4 100 0 94 51 23 0 25 1.49 ATAC chr1 19829784 19829840 trf 1 56.0 1 100 0 112 0 0 0 100 0.00 T chr1 19830566 19830598 trf 4 7.8 4 96 3 55 78 0 21 0 0.76 AAAG chr1 19832658 19832689 trf 4 7.8 4 100 0 62 0 25 22 51 1.48 TCTG chr1 19832741 19832795 trf 4 13.5 4 92 0 81 5 0 50 44 1.25 GTGT chr1 19832741 19832795 trf 6 9.0 6 93 0 81 5 0 50 44 1.25 GTGTGT chr1 19832741 19832795 trf 10 5.4 10 95 0 72 5 0 50 44 1.25 GTGTGAGTGT chr1 19846082 19846125 trf 2 21.5 2 95 0 77 2 0 46 51 1.13 TG chr1 19854970 19855023 trf 2 26.5 2 100 0 106 0 49 0 50 1.00 TC chr1 19855024 19855057 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 19855971 19856012 trf 2 20.5 2 89 0 64 51 43 4 0 1.23 AC chr1 19856011 19856076 trf 2 32.5 2 90 0 103 52 0 47 0 1.00 AG chr1 19856395 19856600 trf 2 102.5 2 79 1 178 0 45 6 47 1.35 CT chr1 19863379 19863412 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 19864609 19864706 trf 3 32.3 3 100 0 194 67 0 32 0 0.91 AGA chr1 19865821 19865906 trf 2 43.0 2 86 2 118 49 47 1 2 1.22 AC chr1 19870843 19870911 trf 4 17.8 4 85 11 90 1 0 19 79 0.81 TTTG chr1 19875686 19875768 trf 7 10.9 7 70 21 51 42 1 14 41 1.53 ATATATG chr1 19882332 19882376 trf 2 22.0 2 90 0 70 45 50 0 4 1.22 CA chr1 19885008 19885081 trf 2 36.5 2 94 0 128 49 1 1 47 1.18 AT chr1 19889901 19889955 trf 2 27.0 2 92 0 90 0 46 0 53 1.00 TC chr1 19889954 19889998 trf 2 22.0 2 95 0 79 52 47 0 0 1.00 CA chr1 19890089 19890160 trf 2 35.5 2 94 0 124 50 46 0 2 1.16 AC chr1 19890291 19890327 trf 7 5.1 7 86 0 54 27 2 22 47 1.65 TAGTATG chr1 19892539 19892595 trf 7 8.3 7 90 9 82 0 0 16 83 0.64 TTTGTTT chr1 19893193 19893236 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 19894015 19894049 trf 4 8.5 4 100 0 68 76 23 0 0 0.79 AAAC chr1 19896545 19896590 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 19906999 19907038 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 19907415 19907449 trf 3 11.0 3 93 6 59 32 0 0 67 0.91 ATT chr1 19908463 19908507 trf 2 22.0 2 90 0 70 4 0 50 45 1.22 TG chr1 19914421 19914457 trf 12 3.0 12 91 0 54 8 2 72 16 1.21 GTGGGTGGGGGA chr1 19915559 19915634 trf 3 25.0 3 88 0 114 61 0 38 0 0.96 AAG chr1 19915609 19915774 trf 6 28.8 6 82 9 96 30 0 67 1 0.98 GGAGAG chr1 19915787 19915870 trf 3 27.7 3 100 0 166 67 0 32 0 0.91 AAG chr1 19916158 19916197 trf 1 39.0 1 89 0 60 94 5 0 0 0.29 A chr1 19916856 19916913 trf 2 28.0 2 87 3 78 50 43 3 1 1.29 AC chr1 19918026 19918089 trf 2 31.5 2 100 0 126 50 0 49 0 1.00 AG chr1 19921090 19921166 trf 3 25.7 3 97 2 145 68 0 31 0 0.90 AAG chr1 19921308 19921354 trf 2 23.0 2 95 0 83 2 0 50 47 1.13 GT chr1 19921359 19921404 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 19925366 19925408 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 19930194 19930240 trf 5 9.2 5 100 0 92 0 19 39 41 1.52 TGCTG chr1 19930685 19930979 trf 10 28.8 10 82 9 308 51 38 0 10 1.36 CACACACATA chr1 19930694 19930981 trf 12 23.6 12 83 7 312 51 38 0 10 1.36 ACACACATACAC chr1 19931473 19931530 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 19946022 19946064 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 19948185 19948213 trf 6 4.7 6 100 0 56 85 14 0 0 0.59 AAAAAC chr1 19948710 19948896 trf 4 46.8 4 94 1 257 44 1 30 23 1.63 AGAT chr1 19954079 19954122 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 19954319 19954353 trf 10 3.4 10 87 0 50 8 0 41 50 1.34 TGTGTGTATG chr1 19954492 19954548 trf 7 8.1 7 81 15 64 85 14 0 0 0.59 AAAACAA chr1 19954493 19954548 trf 4 14.8 4 81 14 57 85 14 0 0 0.60 AAAC chr1 19958406 19958456 trf 7 7.0 7 93 6 75 0 0 16 84 0.63 GTTTTTT chr1 19958406 19958447 trf 4 11.0 4 85 15 61 0 0 19 80 0.71 GTTT chr1 19958407 19958460 trf 8 6.9 8 86 4 65 0 0 15 84 0.61 TTTTTTGT chr1 19965905 19965965 trf 2 30.5 2 93 3 104 0 1 48 50 1.11 TG chr1 19966582 19966638 trf 2 28.0 2 92 0 94 50 46 0 3 1.19 CA chr1 19970729 19970767 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 19971216 19971255 trf 4 9.8 4 100 0 78 48 25 25 0 1.51 CAGA chr1 19976051 19976154 trf 3 34.7 3 94 1 181 0 32 0 67 0.90 TTC chr1 19977357 19977395 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 19977699 19977749 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 19980485 19980536 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 19980977 19981039 trf 2 31.0 2 86 0 88 48 4 1 45 1.33 AT chr1 19985465 19985544 trf 4 19.8 4 97 0 149 49 1 49 0 1.09 GAAG chr1 19986354 19986486 trf 6 23.0 6 80 9 141 36 46 1 15 1.56 CCTAAC chr1 19986360 19986480 trf 11 10.5 11 83 6 109 35 47 1 15 1.55 CCTAACCCAAC chr1 19989178 19989240 trf 4 16.0 4 90 6 101 24 27 0 48 1.51 TCTA chr1 19990914 19990942 trf 4 7.0 4 100 0 56 50 25 0 25 1.50 CAAT chr1 20001687 20001738 trf 2 26.0 2 88 11 79 50 1 0 47 1.12 AT chr1 20003528 20003730 trf 8 25.0 8 87 7 158 58 0 40 0 1.04 GAAAGAAG chr1 20003530 20003730 trf 12 16.6 12 87 6 181 59 1 40 0 1.04 AAGGAAGGAAAG chr1 20003530 20003707 trf 4 43.8 4 94 2 201 58 0 41 0 1.02 AAGG chr1 20007325 20007356 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 20007938 20007964 trf 4 6.5 4 100 0 52 53 0 0 46 1.00 AATT chr1 20009859 20009907 trf 12 4.0 12 83 0 60 31 2 18 47 1.60 TATGTATGTATA chr1 20009859 20009894 trf 4 8.8 4 87 0 52 28 2 20 48 1.63 TATG chr1 20009863 20009906 trf 8 5.4 8 82 0 50 30 2 18 48 1.60 TATGTATA chr1 20017680 20017716 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 20030540 20030566 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 20031896 20031951 trf 2 27.5 2 100 0 110 0 50 0 49 1.00 CT chr1 20033162 20033196 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 20054702 20054764 trf 2 31.0 2 96 0 115 0 48 0 51 1.00 TC chr1 20061246 20061288 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 20061358 20061496 trf 4 34.2 4 89 4 170 0 56 0 43 0.99 CCTT chr1 20061494 20061541 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 20069391 20069418 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 20071954 20072021 trf 4 16.8 4 100 0 134 25 25 0 49 1.51 ATCT chr1 20074998 20075109 trf 5 22.2 5 96 0 168 74 0 25 0 0.81 AAAAG chr1 20076081 20076199 trf 9 12.9 9 74 10 69 34 54 0 11 1.36 TACCACCAC chr1 20076082 20076176 trf 3 31.3 3 84 0 116 34 57 0 8 1.29 ACC chr1 20076085 20076209 trf 12 10.4 12 79 13 132 34 54 0 10 1.41 ACCACCACCACT chr1 20079239 20079279 trf 5 7.8 5 91 2 62 82 15 0 2 0.77 AAAAC chr1 20083119 20083190 trf 2 35.5 2 94 0 115 49 2 1 46 1.25 AT chr1 20085307 20085368 trf 3 20.3 3 93 6 106 34 0 0 65 0.93 ATT chr1 20089931 20089964 trf 4 8.5 4 93 6 59 0 0 21 78 0.75 TTGT chr1 20096292 20096322 trf 12 2.5 12 100 0 60 6 13 0 80 0.91 TTTTTTTTTCCA chr1 20102921 20102965 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 CA chr1 20102921 20102980 trf 8 7.4 8 92 0 64 49 45 0 5 1.24 CACATACA chr1 20104244 20104318 trf 3 24.7 3 100 0 148 67 0 32 0 0.91 AAG chr1 20106204 20106231 trf 8 3.4 8 100 0 54 25 22 22 29 1.99 TATGCCAG chr1 20111702 20111902 trf 4 50.0 4 88 4 206 2 48 0 49 1.18 TCCT chr1 20115134 20115191 trf 2 28.5 2 100 0 114 0 0 49 50 1.00 TG chr1 20121060 20121261 trf 8 25.1 8 93 0 348 38 0 60 0 1.01 GAGGAAGG chr1 20122293 20122345 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 20122344 20122376 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 20123001 20123033 trf 12 2.7 12 90 0 55 0 46 0 53 1.00 CTTCTCTCTCTC chr1 20123032 20123085 trf 2 26.0 2 84 3 61 47 43 1 7 1.42 CA chr1 20123143 20123187 trf 2 22.0 2 95 0 79 0 2 50 47 1.13 GT chr1 20129193 20129242 trf 5 9.8 5 95 0 89 79 18 2 0 0.83 AAAAC chr1 20129421 20129462 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 20133613 20133656 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 20134756 20134814 trf 2 29.5 2 96 3 109 0 0 51 48 1.00 GT chr1 20140295 20140368 trf 2 36.5 2 100 0 146 0 49 0 50 1.00 TC chr1 20146634 20146730 trf 2 48.0 2 91 0 111 0 42 8 48 1.33 TC chr1 20146729 20146767 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 20146766 20146809 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 20161224 20161265 trf 4 10.5 4 80 15 50 75 0 0 24 0.80 AATA chr1 20166386 20166432 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 20167089 20167138 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 20170017 20170049 trf 4 7.8 4 96 3 55 78 21 0 0 0.76 AAAC chr1 20172217 20172278 trf 6 10.2 6 100 0 122 0 16 0 83 0.64 TTTCTT chr1 20172271 20172350 trf 4 19.8 4 92 0 95 0 32 0 67 0.91 TTTC chr1 20173302 20173353 trf 2 25.5 2 95 0 84 0 0 47 52 1.00 GT chr1 20177460 20177562 trf 6 16.5 6 71 9 53 50 34 4 10 1.59 ACATAC chr1 20177472 20177550 trf 2 38.5 2 70 7 50 50 37 5 7 1.54 AC chr1 20179409 20179459 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 20183484 20183552 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 20183808 20183838 trf 4 7.5 4 92 0 51 70 0 3 26 1.03 TAAA chr1 20184846 20184881 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 20186661 20186737 trf 2 38.5 2 76 2 55 44 7 5 42 1.56 TA chr1 20186845 20186870 trf 12 2.1 12 100 0 50 32 24 24 20 1.98 TGGGTCACAAAC chr1 20186913 20186979 trf 2 33.0 2 100 0 132 0 50 0 50 1.00 TC chr1 20186979 20187012 trf 8 4.1 8 100 0 66 0 12 27 60 1.32 GGCTTTTT chr1 20191583 20191730 trf 6 24.8 6 73 10 63 0 37 10 51 1.42 TCTGTC chr1 20191599 20191724 trf 10 12.5 10 75 8 85 0 39 8 51 1.39 TCTCTGTCTC chr1 20191631 20191728 trf 2 49.0 2 78 2 97 1 39 7 52 1.36 CT chr1 20191727 20191758 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 20192899 20192940 trf 2 20.5 2 84 0 55 53 41 2 2 1.27 AC chr1 20195796 20195833 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 20197518 20197554 trf 3 12.0 3 100 0 72 66 33 0 0 0.92 CAA chr1 20199699 20199749 trf 4 12.5 4 95 0 91 74 0 2 24 0.93 AATA chr1 20202313 20202695 trf 4 95.5 4 87 4 439 66 0 33 0 0.92 GAAA chr1 20203574 20203619 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 20204555 20204580 trf 5 5.0 5 100 0 50 20 0 0 80 0.72 TTTTA chr1 20210477 20210522 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 20211322 20211369 trf 12 3.9 12 78 10 60 70 0 29 0 0.88 GAGAAAGAAAAA chr1 20211593 20211634 trf 12 3.4 12 89 0 64 43 0 56 0 0.99 AGGAAGAGAGGG chr1 20213568 20213594 trf 11 2.4 11 100 0 52 53 7 0 38 1.30 ATATAACTATA chr1 20216186 20216229 trf 2 21.0 2 80 4 50 44 2 4 48 1.36 AT chr1 20217053 20217098 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 20217236 20217306 trf 2 35.0 2 97 0 131 1 50 0 48 1.09 TC chr1 20217309 20217352 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 20221971 20222175 trf 4 50.0 4 91 3 309 50 3 24 21 1.65 GATA chr1 20225308 20225419 trf 8 14.0 8 72 21 67 72 0 27 0 0.84 GAAAAAGA chr1 20225312 20225406 trf 6 16.5 6 78 16 94 72 0 27 0 0.85 AAAGAG chr1 20225622 20225651 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 20236802 20236843 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 20236842 20236886 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 20236899 20236934 trf 10 3.5 10 85 14 54 60 28 0 11 1.32 ACACACATAA chr1 20241534 20241559 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 20244024 20244068 trf 2 22.0 2 95 0 79 2 50 0 47 1.13 CT chr1 20256275 20256300 trf 4 6.2 4 100 0 50 52 24 0 24 1.48 ATAC chr1 20257440 20257483 trf 12 3.6 12 78 12 52 41 4 6 46 1.51 TGTATATATATA chr1 20257534 20257568 trf 4 8.5 4 100 0 68 50 0 26 23 1.50 GATA chr1 20261419 20261600 trf 8 22.9 8 71 18 121 48 16 1 33 1.56 ATATATAC chr1 20261432 20261631 trf 6 33.5 6 71 9 113 49 18 1 31 1.54 TATACA chr1 20261558 20261630 trf 10 7.2 10 78 12 58 51 20 1 26 1.56 TACACATACA chr1 20262099 20262124 trf 10 2.5 10 100 0 50 0 12 0 88 0.53 TTTTCTTTTT chr1 20262969 20263020 trf 2 25.5 2 91 0 84 3 0 47 49 1.20 TG chr1 20269838 20269909 trf 6 11.8 6 93 0 115 19 1 29 49 1.57 TGTATG chr1 20272639 20272715 trf 4 19.0 4 91 0 116 47 0 52 0 1.00 GAGA chr1 20272639 20272715 trf 10 7.6 10 92 0 116 47 0 52 0 1.00 GAGAGAGAGA chr1 20272639 20272715 trf 6 12.7 6 92 0 116 47 0 52 0 1.00 GAGAGA chr1 20277930 20277956 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 20287240 20287320 trf 2 38.5 2 85 12 108 47 46 0 6 1.27 AC chr1 20294786 20294813 trf 11 2.5 11 100 0 54 0 0 7 92 0.38 TTTTTTTGTTT chr1 20297053 20297092 trf 5 7.8 5 100 0 78 0 0 17 82 0.68 TTTTG chr1 20297178 20297221 trf 5 8.6 5 100 0 86 18 0 0 81 0.69 TTTAT chr1 20297426 20297491 trf 5 13.0 5 100 0 130 0 0 20 80 0.72 GTTTT chr1 20301228 20301270 trf 7 6.1 7 97 2 77 0 71 0 28 0.86 CTCCCTC chr1 20309255 20309318 trf 4 15.8 4 100 0 126 23 25 0 50 1.49 TCTA chr1 20309325 20309366 trf 2 20.5 2 87 0 55 51 41 2 4 1.36 AC chr1 20311553 20311579 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 20313582 20313670 trf 5 17.4 5 97 2 167 0 59 0 40 0.98 CTCTC chr1 20315033 20315128 trf 5 18.4 5 87 6 136 0 54 1 44 1.07 CTCTC chr1 20315208 20315280 trf 2 36.0 2 97 0 135 0 48 0 51 1.00 TC chr1 20324337 20324373 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 20329472 20329534 trf 4 15.5 4 96 0 106 25 27 0 46 1.53 TATC chr1 20333797 20333860 trf 10 6.7 10 77 14 62 3 36 7 52 1.47 TGTCTCTCTC chr1 20336147 20336195 trf 3 16.0 3 100 0 96 66 0 0 33 0.92 AAT chr1 20336351 20336578 trf 12 19.1 12 85 7 230 0 35 0 63 0.98 TCTTTCTTTCTC chr1 20336351 20336576 trf 4 54.8 4 85 5 207 0 35 0 64 0.98 TCTT chr1 20336991 20337044 trf 4 13.2 4 79 0 61 32 1 66 0 1.03 GGGA chr1 20337837 20337945 trf 12 9.2 12 86 4 103 50 12 36 0 1.41 GAGAGAGACAGA chr1 20337837 20337903 trf 2 34.0 2 86 6 82 53 4 42 0 1.21 GA chr1 20337876 20337943 trf 4 16.8 4 90 0 89 49 19 31 0 1.49 AGAC chr1 20338754 20338839 trf 4 20.8 4 88 7 118 50 0 49 0 1.00 GAAG chr1 20345686 20345746 trf 8 7.5 8 94 0 93 45 50 0 5 1.23 CACACACA chr1 20345686 20345746 trf 6 10.0 6 94 0 93 45 50 0 5 1.23 CACACA chr1 20354837 20354876 trf 5 7.8 5 100 0 78 79 20 0 0 0.73 AAACA chr1 20365360 20365390 trf 2 15.0 2 92 0 51 0 3 50 46 1.18 GT chr1 20368449 20368478 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 20369948 20370193 trf 3 88.3 3 80 16 298 29 0 70 0 0.87 GAG chr1 20369953 20370181 trf 11 20.8 11 91 4 365 28 0 71 0 0.87 GAGGAGGGGAG chr1 20372210 20372286 trf 2 38.0 2 89 0 98 50 7 0 42 1.31 AT chr1 20372302 20372345 trf 12 3.6 12 78 12 52 46 2 2 48 1.27 TATATATTTAAA chr1 20377519 20377557 trf 6 6.3 6 100 0 76 47 0 18 34 1.49 GTAAAT chr1 20378875 20378926 trf 6 8.5 6 88 0 75 50 1 1 45 1.24 ATATAT chr1 20378875 20378926 trf 4 12.8 4 89 0 75 50 1 1 45 1.24 ATAT chr1 20387530 20387619 trf 9 10.0 9 75 13 60 78 17 2 1 0.91 ACAAAAAAA chr1 20387533 20387620 trf 4 22.0 4 78 17 85 78 18 2 1 0.93 AAAC chr1 20401527 20401585 trf 4 14.5 4 85 0 80 48 0 51 0 1.00 AAGG chr1 20401656 20401742 trf 4 22.0 4 90 4 140 51 0 23 25 1.49 GATA chr1 20403654 20403703 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 20412598 20412634 trf 1 36.0 1 88 0 54 94 5 0 0 0.31 A chr1 20412599 20412633 trf 11 2.9 12 91 8 61 94 5 0 0 0.32 AAAAAAAAAAAC chr1 20412600 20412632 trf 11 2.9 11 100 0 64 93 6 0 0 0.34 AAAAAAAAAAC chr1 20412818 20412849 trf 4 7.8 4 100 0 62 74 0 0 25 0.82 TAAA chr1 20413230 20413302 trf 6 12.0 6 96 0 99 33 59 6 0 1.24 ACCACC chr1 20414142 20414167 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 20414166 20414207 trf 2 20.5 2 94 0 73 2 0 46 51 1.14 TG chr1 20420530 20420729 trf 4 48.8 4 92 4 335 0 48 0 51 1.04 TTCC chr1 20420765 20420803 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 20432063 20432102 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 20432064 20432126 trf 10 5.8 11 87 10 51 45 50 0 4 1.23 CACACACACTC chr1 20439567 20439616 trf 1 49.0 1 91 0 80 95 0 2 2 0.29 A chr1 20439572 20439621 trf 8 5.9 9 95 2 61 93 0 6 0 0.33 AAAAAAAGA chr1 20448495 20448535 trf 2 20.0 2 94 0 71 47 50 2 0 1.14 CA chr1 20448532 20448609 trf 4 19.2 4 89 0 82 49 20 0 29 1.49 ACAT chr1 20448787 20448824 trf 4 9.2 4 93 0 65 48 24 2 24 1.64 ACAT chr1 20451098 20451205 trf 4 27.8 4 75 7 87 33 0 65 0 0.99 GAGG chr1 20453516 20453547 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 20453742 20453808 trf 6 11.3 6 74 6 55 50 12 36 1 1.49 GAGACA chr1 20453753 20453786 trf 8 4.4 8 85 14 52 48 12 39 0 1.40 AGAGACAG chr1 20455210 20455268 trf 4 14.5 4 96 0 107 50 1 24 24 1.59 ATAG chr1 20457825 20457874 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 20459201 20459261 trf 2 30.0 2 96 0 111 50 48 0 1 1.11 CA chr1 20463887 20463935 trf 8 5.5 8 79 18 51 45 0 54 0 0.99 GAGAGAGG chr1 20465366 20465461 trf 4 24.0 4 88 2 111 45 2 29 23 1.64 AGAT chr1 20466021 20466052 trf 3 10.3 3 100 0 62 0 0 32 67 0.91 TGT chr1 20469528 20469566 trf 3 12.7 3 100 0 76 34 0 0 65 0.93 ATT chr1 20472347 20472447 trf 4 25.5 4 84 8 125 27 26 0 47 1.53 TCTA chr1 20472456 20472534 trf 2 39.0 2 97 0 147 0 48 0 51 1.00 TC chr1 20477002 20477081 trf 2 39.5 2 97 0 149 49 0 50 0 1.00 AG chr1 20478930 20478982 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 20483924 20483960 trf 4 9.0 4 100 0 72 0 25 0 75 0.81 CTTT chr1 20484624 20484661 trf 2 18.5 2 100 0 74 48 0 0 51 1.00 TA chr1 20484945 20485010 trf 2 33.0 2 83 9 80 44 4 1 49 1.32 AT chr1 20485527 20485578 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 20493582 20493618 trf 1 36.0 1 88 0 54 94 2 0 2 0.37 A chr1 20496136 20496275 trf 8 16.5 8 71 15 93 46 35 0 17 1.54 CACACATA chr1 20496136 20496220 trf 2 41.0 2 76 4 51 46 38 0 15 1.46 CA chr1 20498096 20498121 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 20498997 20499036 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 20499035 20499082 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 20503469 20503505 trf 3 12.0 3 100 0 72 0 0 33 66 0.92 GTT chr1 20509225 20509542 trf 4 77.8 4 90 4 366 66 0 33 0 0.95 AAGA chr1 20511705 20511734 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 20512301 20512352 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 20514179 20514289 trf 4 27.8 4 90 5 152 44 0 30 24 1.60 AGAT chr1 20514282 20514346 trf 6 10.5 6 94 1 110 48 1 32 17 1.56 AGATAG chr1 20515428 20515470 trf 3 14.3 3 95 5 77 69 30 0 0 0.89 AAC chr1 20520633 20520693 trf 10 5.9 10 82 3 66 38 1 10 50 1.46 TATATATATG chr1 20520645 20520694 trf 2 24.0 2 83 4 62 42 0 8 48 1.32 TA chr1 20520811 20520861 trf 2 25.5 2 79 4 57 42 0 8 50 1.32 TA chr1 20520817 20520863 trf 8 5.8 8 97 0 83 39 0 10 50 1.38 ATATGTAT chr1 20531770 20531817 trf 4 11.8 4 95 0 76 25 4 0 70 1.05 ATTT chr1 20532144 20532176 trf 4 8.2 4 93 6 57 75 25 0 0 0.81 CAAA chr1 20537135 20537178 trf 4 10.8 4 100 0 86 74 0 0 25 0.82 TAAA chr1 20539979 20540017 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 AG chr1 20546196 20546223 trf 4 6.8 4 100 0 54 51 0 0 48 1.00 AATT chr1 20558887 20558921 trf 4 8.5 4 86 0 50 26 20 26 26 1.99 AGTC chr1 20564607 20564645 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 20564680 20564755 trf 4 18.8 4 97 0 78 64 0 36 0 0.94 AGAA chr1 20564711 20564933 trf 12 18.4 12 85 7 200 45 0 54 0 0.99 AAGGAAGGAAGG chr1 20564753 20564812 trf 4 14.8 4 100 0 118 25 0 74 0 0.82 GAGG chr1 20564813 20564933 trf 4 29.5 4 86 8 163 50 0 49 0 1.00 GAAG chr1 20564932 20564976 trf 12 3.4 13 84 9 63 59 0 40 0 0.98 AGAGAGAGAGGAA chr1 20566048 20566116 trf 2 34.0 2 93 0 118 0 47 2 50 1.16 CT chr1 20568737 20568770 trf 4 8.2 4 93 0 57 0 0 21 78 0.75 TGTT chr1 20570799 20570931 trf 2 68.0 2 66 11 60 41 46 3 9 1.51 CA chr1 20570971 20571005 trf 4 8.5 4 100 0 68 50 26 0 23 1.50 CATA chr1 20571058 20571117 trf 5 12.0 5 96 3 111 79 20 0 0 0.73 AAAAC chr1 20571279 20571310 trf 1 31.0 1 93 0 53 96 3 0 0 0.21 A chr1 20581681 20581741 trf 5 12.0 5 100 0 120 80 0 0 20 0.72 AAAAT chr1 20587925 20588283 trf 4 87.2 4 84 7 254 58 1 39 0 1.10 AGGA chr1 20589582 20589624 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 20590796 20590832 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 20604162 20604211 trf 2 25.0 2 95 4 91 48 51 0 0 1.00 CA chr1 20604340 20604428 trf 3 29.3 3 92 0 149 0 62 0 37 0.95 TCC chr1 20606199 20606228 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 20609118 20609307 trf 4 46.2 4 89 3 108 59 0 40 0 0.97 AAAG chr1 20609132 20609215 trf 2 43.5 2 83 9 111 53 0 46 0 1.00 AG chr1 20612212 20612262 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 20615578 20615608 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 20624130 20624379 trf 6 41.3 6 95 2 275 0 47 0 52 1.00 TTCTCC chr1 20624962 20625006 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 CA chr1 20625100 20625145 trf 4 11.2 4 100 0 90 75 0 0 24 0.80 AATA chr1 20625604 20625637 trf 6 5.8 6 92 7 52 0 0 15 84 0.61 TTTTTG chr1 20630010 20630073 trf 5 12.6 5 96 0 117 0 1 19 79 0.82 TTTGT chr1 20631256 20631309 trf 2 26.5 2 100 0 106 50 0 0 49 1.00 AT chr1 20632334 20632416 trf 2 40.5 2 93 4 139 1 1 50 47 1.16 GT chr1 20640966 20641002 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 20641286 20641330 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 20641789 20641826 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 20655537 20655585 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 20657996 20658025 trf 5 5.8 5 100 0 58 82 0 0 17 0.66 AAAAT chr1 20661368 20661405 trf 1 37.0 1 88 0 56 0 0 5 94 0.30 T chr1 20661371 20661406 trf 9 4.0 9 92 7 63 0 0 8 91 0.42 TTTTTTTTG chr1 20665061 20665281 trf 4 54.8 4 89 4 273 68 0 31 0 0.90 AAAG chr1 20665079 20665114 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 20670122 20670182 trf 2 30.0 2 93 6 104 48 0 50 1 1.11 GA chr1 20670271 20670366 trf 5 19.0 5 100 0 190 40 0 60 0 0.97 AGAGG chr1 20673841 20673964 trf 6 20.5 6 94 0 192 0 55 0 44 0.99 CTCTCT chr1 20675692 20675883 trf 5 38.2 5 99 0 220 50 0 49 0 1.00 AGGAA chr1 20676457 20676484 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 20677603 20677638 trf 4 8.8 4 87 0 52 0 51 0 48 1.00 TCCT chr1 20678365 20678524 trf 9 18.2 9 79 5 150 38 0 60 0 1.02 AGGAGGAGG chr1 20678365 20678524 trf 6 27.3 6 90 5 150 38 0 60 0 1.02 AGGAGG chr1 20678408 20678682 trf 12 22.6 12 94 2 215 56 0 43 0 1.04 AGGAGAAGGAGA chr1 20678468 20678689 trf 6 36.8 6 96 0 334 61 0 37 0 1.02 AGAAGA chr1 20681333 20681402 trf 4 17.8 4 89 5 106 72 0 1 26 0.93 AAAT chr1 20683299 20683342 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 20683354 20683391 trf 2 18.5 2 88 0 56 51 5 0 43 1.24 AT chr1 20684917 20684961 trf 4 11.0 4 90 9 72 22 0 0 77 0.77 ATTT chr1 20687060 20687109 trf 6 8.5 6 80 12 50 85 12 2 0 0.68 AAAACA chr1 20687264 20687335 trf 7 9.2 8 78 18 55 0 0 22 77 0.77 TTTTGGTT chr1 20687966 20688083 trf 4 29.8 4 90 3 166 0 54 0 44 1.05 CTCT chr1 20688370 20688462 trf 12 7.8 12 72 13 75 3 10 38 47 1.55 TGTCTGTGTGTG chr1 20688546 20688684 trf 12 11.3 12 70 7 64 2 31 14 50 1.57 TCTCTGTCTCTC chr1 20689347 20689391 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 20690681 20690722 trf 11 3.4 12 86 10 57 85 14 0 0 0.60 AAAAACAAAAAC chr1 20690681 20690722 trf 6 6.8 6 83 10 57 85 14 0 0 0.60 AAAAAC chr1 20691155 20691259 trf 2 52.5 2 82 1 129 0 5 45 48 1.33 TG chr1 20691841 20691906 trf 2 32.5 2 100 0 130 0 49 0 50 1.00 TC chr1 20692148 20692195 trf 12 3.9 12 78 10 51 6 29 0 63 1.19 TTCTTTCTTTCC chr1 20692746 20692821 trf 2 38.5 2 74 10 66 46 6 45 1 1.37 GA chr1 20692830 20692881 trf 4 12.8 4 100 0 102 50 0 23 25 1.49 ATAG chr1 20693191 20693238 trf 10 4.5 10 87 10 67 51 12 36 0 1.40 AGAGAGAGAC chr1 20693197 20693238 trf 6 7.5 6 79 20 54 51 12 36 0 1.40 AGACAG chr1 20695963 20696038 trf 2 37.5 2 76 0 60 52 37 5 5 1.47 AC chr1 20699385 20699416 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 20713986 20714018 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 20715239 20715276 trf 4 9.2 4 100 0 74 48 0 51 0 1.00 GGAA chr1 20718870 20719081 trf 8 26.8 8 79 18 93 31 0 68 0 0.90 GAGAGAGG chr1 20721583 20721644 trf 5 12.0 5 86 13 81 0 0 21 78 0.75 GTTTT chr1 20721885 20721940 trf 2 27.0 2 77 3 56 3 3 41 50 1.37 TG chr1 20722062 20722323 trf 10 25.5 10 67 14 77 7 11 31 49 1.66 TGTGTGTGTC chr1 20722066 20722209 trf 6 25.5 6 65 16 56 5 11 33 49 1.62 TGTGTC chr1 20722904 20722950 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 20723754 20723960 trf 10 19.1 10 90 6 207 0 58 0 40 1.06 CCTCTCCTCT chr1 20724348 20724398 trf 4 12.5 4 100 0 100 50 0 24 26 1.50 TAGA chr1 20724395 20724434 trf 4 9.8 4 94 0 69 48 23 2 25 1.63 ATAC chr1 20726793 20726855 trf 2 31.0 2 90 0 97 48 46 1 3 1.28 AC chr1 20734851 20734898 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 20737731 20737757 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 20739051 20739090 trf 4 9.8 4 100 0 78 25 0 0 74 0.82 ATTT chr1 20742271 20742350 trf 4 19.8 4 100 0 158 74 0 25 0 0.82 AGAA chr1 20742273 20742441 trf 12 12.1 15 88 6 136 73 0 25 0 0.87 AAAGAAAAGAAAAGA chr1 20742273 20742441 trf 8 18.1 10 90 4 136 73 0 25 0 0.87 AAAGAAAAGA chr1 20748192 20748240 trf 5 9.6 5 95 0 87 2 0 18 79 0.84 TTTGT chr1 20750383 20750431 trf 12 4.2 12 80 17 57 0 0 22 77 0.78 TGTTGTTGTTTT chr1 20750773 20750831 trf 7 8.1 7 81 14 66 44 53 0 1 1.10 ACACCAC chr1 20750773 20750831 trf 9 6.5 10 77 18 58 44 53 0 1 1.10 ACACACACAC chr1 20750773 20750831 trf 2 32.5 2 74 22 58 44 53 0 1 1.10 AC chr1 20760806 20760857 trf 3 17.0 3 100 0 102 33 0 0 66 0.92 TTA chr1 20761988 20762046 trf 2 29.0 2 89 0 89 44 50 5 0 1.24 CA chr1 20762598 20762784 trf 4 45.2 4 85 8 58 60 0 39 0 0.97 AGAA chr1 20764884 20764914 trf 5 6.0 5 100 0 60 80 20 0 0 0.72 AAAAC chr1 20765552 20765587 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 20767220 20767302 trf 2 40.5 2 85 4 103 6 45 0 48 1.27 TC chr1 20783020 20783057 trf 4 9.2 4 93 0 56 72 5 0 21 1.04 TAAA chr1 20788220 20788267 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 20790799 20790912 trf 12 9.7 12 87 5 115 0 56 0 42 1.05 TCTCCCTCTCTC chr1 20790799 20790874 trf 2 37.5 2 94 0 132 0 50 1 48 1.09 TC chr1 20793510 20793594 trf 5 17.4 5 74 7 57 26 3 30 39 1.73 ATGGT chr1 20795654 20795679 trf 11 2.3 11 100 0 50 0 20 24 56 1.43 CTTTGTTGCTG chr1 20796839 20796882 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 20811168 20811231 trf 12 4.9 14 72 18 57 50 44 0 4 1.23 ACACACACACACAC chr1 20827289 20827332 trf 4 10.8 4 94 0 77 0 23 23 53 1.46 TCTG chr1 20830104 20830440 trf 3 107.3 3 80 8 180 57 0 41 0 1.03 AAG chr1 20830119 20830660 trf 6 89.3 6 76 12 171 48 0 50 0 1.03 AAGAGG chr1 20830222 20830308 trf 4 21.5 4 92 0 82 63 0 36 0 0.94 AAGA chr1 20830335 20830660 trf 9 36.9 9 81 9 260 42 0 57 0 0.98 AGGAGGAAG chr1 20830438 20830659 trf 3 72.7 3 90 2 343 37 0 62 0 0.95 GAG chr1 20831331 20831357 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 20831509 20831552 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 20838278 20838305 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 20838586 20838612 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 20847316 20847379 trf 3 21.0 3 100 0 126 66 0 33 0 0.92 AGA chr1 20847377 20847440 trf 3 21.0 3 100 0 126 33 0 66 0 0.92 GAG chr1 20847741 20847794 trf 2 26.5 2 84 0 52 0 56 0 43 0.99 TC chr1 20847794 20847841 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 20848011 20848108 trf 8 12.1 8 86 0 86 50 30 0 18 1.47 ATACACAC chr1 20848011 20848096 trf 4 21.2 4 92 0 107 50 28 0 21 1.49 ATAC chr1 20848013 20848113 trf 12 8.3 12 84 0 83 50 32 0 18 1.47 ACATACACACAC chr1 20848041 20848112 trf 4 17.8 4 91 0 52 50 35 0 14 1.43 ACAC chr1 20849008 20849183 trf 6 29.2 6 100 0 350 33 16 50 0 1.46 GAGGCA chr1 20852161 20852207 trf 12 4.0 12 83 13 53 0 0 15 84 0.62 GTTTTTTTGTTT chr1 20852161 20852208 trf 8 6.0 8 82 7 53 0 0 14 85 0.61 GTTTTTTT chr1 20859053 20859080 trf 3 9.0 3 100 0 54 0 0 33 66 0.92 GTT chr1 20865929 20865993 trf 4 16.0 4 90 0 92 6 0 43 50 1.27 TGTG chr1 20865929 20865993 trf 6 10.7 6 89 0 92 6 0 43 50 1.27 TGTGTG chr1 20865929 20865993 trf 10 6.6 10 87 7 78 6 0 43 50 1.27 TGTGTGTATG chr1 20868667 20868710 trf 2 21.5 2 100 0 86 48 0 51 0 1.00 GA chr1 20869719 20869759 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 TC chr1 20871457 20871585 trf 2 65.0 2 80 3 116 10 0 39 49 1.42 GT chr1 20872976 20873016 trf 4 10.0 4 94 0 71 22 0 2 75 0.93 ATTT chr1 20873715 20873772 trf 2 29.0 2 92 3 98 1 0 49 49 1.11 TG chr1 20878837 20878883 trf 2 23.0 2 81 0 56 50 43 2 4 1.34 AC chr1 20881305 20881344 trf 6 6.0 7 85 14 57 0 0 12 87 0.55 TTTTTGT chr1 20882084 20882109 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 20885270 20885312 trf 2 21.0 2 95 0 75 50 2 0 47 1.14 AT chr1 20894144 20894225 trf 6 13.8 6 76 12 55 77 16 2 3 1.01 CAAAAA chr1 20894146 20894182 trf 5 7.2 5 93 0 63 80 16 0 2 0.83 AAAAC chr1 20896837 20896884 trf 2 24.0 2 95 4 87 0 0 51 48 1.00 GT chr1 20897432 20897474 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 20899785 20899844 trf 12 4.8 12 83 8 64 33 32 13 20 1.91 CACATACATGTG chr1 20899785 20899835 trf 12 4.0 12 85 10 73 32 34 16 18 1.92 CACACACATGTG chr1 20901688 20901730 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 20902870 20903173 trf 12 23.8 12 64 13 52 42 34 1 21 1.63 ACACACACACAT chr1 20903106 20903174 trf 12 5.6 13 75 19 58 44 35 1 19 1.60 ACACACATACATT chr1 20903114 20903184 trf 12 6.2 12 77 12 76 42 38 1 17 1.58 ACATTCACACAC chr1 20903133 20903183 trf 10 4.8 10 88 9 73 42 40 2 16 1.59 CACACACATT chr1 20904641 20904711 trf 4 17.5 4 90 0 113 0 44 0 55 0.99 TTCC chr1 20907429 20907485 trf 5 10.6 5 75 24 53 0 3 21 75 0.96 TTGTT chr1 20907555 20907602 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 20908470 20908507 trf 8 4.6 8 90 9 58 0 0 10 89 0.49 TTTTTGTT chr1 20908476 20908508 trf 9 3.7 9 91 8 57 0 0 9 90 0.45 TTTTTTGTT chr1 20910079 20910110 trf 4 7.8 4 100 0 62 74 0 0 25 0.82 TAAA chr1 20912419 20912476 trf 3 19.7 3 73 20 50 35 0 63 1 1.05 GAG chr1 20913024 20913068 trf 1 44.0 1 90 0 70 95 4 0 0 0.27 A chr1 20913953 20914038 trf 4 21.2 4 87 4 118 0 29 0 70 0.87 TCTT chr1 20917482 20917524 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 20929099 20929137 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 20931065 20931154 trf 4 22.5 4 87 2 99 0 57 1 41 1.06 CTCT chr1 20933471 20933501 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 20933916 20933954 trf 4 9.5 4 88 0 58 2 0 23 73 0.95 TTGT chr1 20938132 20938172 trf 9 4.4 9 96 0 71 20 40 27 12 1.88 GTGACACCC chr1 20940413 20940475 trf 9 6.9 9 90 0 79 16 58 25 0 1.38 GCCCAGCCC chr1 20943305 20943332 trf 3 9.0 3 100 0 54 66 33 0 0 0.92 CAA chr1 20943856 20943953 trf 3 31.7 3 93 4 167 0 32 0 67 0.91 CTT chr1 20944748 20944849 trf 6 16.8 6 83 0 103 0 38 9 51 1.35 TCTCTC chr1 20944748 20944851 trf 12 8.1 12 91 4 125 0 37 10 51 1.37 TCTCTCTCTCTG chr1 20944750 20944845 trf 8 12.9 8 78 16 107 0 37 10 51 1.37 TCTCTCTG chr1 20944853 20944954 trf 6 16.8 6 98 0 148 50 9 0 39 1.36 ATATAC chr1 20945413 20945458 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 20949921 20949971 trf 2 25.5 2 91 4 84 0 0 48 52 1.00 TG chr1 20953584 20953610 trf 4 6.5 4 100 0 52 0 0 26 73 0.84 TGTT chr1 20955881 20955928 trf 4 11.8 4 100 0 94 25 48 0 25 1.51 TCAC chr1 20956511 20956564 trf 4 13.2 4 100 0 106 24 49 0 26 1.51 TCCA chr1 20956569 20956617 trf 4 12.0 4 100 0 96 25 25 0 50 1.50 TATC chr1 20956959 20957053 trf 8 11.8 8 91 0 143 0 44 0 55 0.99 TCTCTCTC chr1 20956959 20957053 trf 6 15.7 6 96 0 143 0 44 0 55 0.99 TCTCTC chr1 20958055 20958104 trf 4 12.8 4 78 8 57 2 26 20 51 1.59 TCTG chr1 20958105 20958150 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 20958840 20958913 trf 2 37.0 2 94 2 130 50 49 0 0 1.00 AC chr1 20960870 20960941 trf 2 35.5 2 94 0 124 50 1 0 47 1.09 TA chr1 20962625 20962656 trf 4 7.5 4 92 7 53 0 0 25 74 0.82 TTTG chr1 20968542 20968593 trf 2 26.0 2 96 4 95 50 0 49 0 1.00 GA chr1 20969452 20969538 trf 3 28.7 3 92 0 118 0 6 32 60 1.23 TTG chr1 20969819 20969852 trf 11 2.8 12 86 9 50 72 27 0 0 0.85 AAAACCAAAACC chr1 20969819 20969852 trf 6 5.7 6 89 7 50 72 27 0 0 0.85 AAAACC chr1 20970205 20970242 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 20971057 20971087 trf 2 15.5 2 93 6 53 53 46 0 0 1.00 AC chr1 20983616 20983669 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 20984823 20984878 trf 2 27.5 2 96 0 101 0 1 49 49 1.11 GT chr1 20985272 20985324 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 20987139 20987192 trf 11 4.8 11 77 13 56 0 1 22 75 0.90 GTTTGTTTTTT chr1 20993222 20993273 trf 4 12.8 4 100 0 102 25 25 0 49 1.51 CTAT chr1 20994808 20994838 trf 12 2.5 12 94 0 51 73 26 0 0 0.84 AAAAACCAAAAC chr1 20995241 20995289 trf 5 9.6 5 100 0 96 81 18 0 0 0.70 AAAAC chr1 21001253 21001280 trf 3 9.0 3 100 0 54 33 0 66 0 0.92 AGG chr1 21008720 21008766 trf 3 15.0 3 86 4 65 2 2 63 32 1.19 TGG chr1 21009654 21009728 trf 4 18.5 4 100 0 148 0 51 0 48 1.00 CCTT chr1 21014264 21014291 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 21015113 21015172 trf 4 15.2 4 89 7 86 50 27 0 22 1.49 ATAC chr1 21022583 21022626 trf 4 10.8 4 87 9 61 72 25 0 2 0.97 AAAC chr1 21025643 21025814 trf 6 30.5 6 94 4 249 31 14 53 0 1.41 GGGCAA chr1 21025966 21026006 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 21026376 21026450 trf 2 37.0 2 91 0 121 45 0 54 0 1.00 AG chr1 21028472 21028506 trf 2 17.0 2 93 0 59 52 47 0 0 1.00 CA chr1 21032866 21032914 trf 1 48.0 1 87 0 69 0 6 0 93 0.34 T chr1 21034830 21034936 trf 4 26.8 4 72 1 61 9 1 37 50 1.46 TGTG chr1 21034865 21035112 trf 10 23.9 10 69 9 102 18 4 29 47 1.67 TGTGTATGTA chr1 21040579 21040611 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 21040610 21040692 trf 4 20.5 4 88 0 74 51 10 37 0 1.37 GAGA chr1 21042176 21042253 trf 2 38.5 2 92 0 127 0 46 3 49 1.20 CT chr1 21042252 21042280 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 21045599 21045628 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 21046411 21046478 trf 2 33.5 2 93 0 116 50 0 49 0 1.00 AG chr1 21053545 21053608 trf 2 31.5 2 80 0 72 44 46 6 3 1.45 AC chr1 21055397 21055458 trf 2 30.5 2 96 0 113 49 1 0 49 1.10 TA chr1 21055457 21055492 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 21055507 21055570 trf 6 10.5 6 89 0 90 50 19 0 30 1.47 ATATAC chr1 21056502 21056534 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 21069313 21069351 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 21069350 21069381 trf 2 15.5 2 100 0 62 48 0 51 0 1.00 GA chr1 21071647 21071682 trf 5 6.6 5 90 9 52 74 25 0 0 0.82 CAAAA chr1 21076772 21076807 trf 2 18.0 2 94 5 63 48 51 0 0 1.00 CA chr1 21077882 21077923 trf 10 4.2 10 87 6 66 34 0 39 26 1.57 ATATGGGTAG chr1 21079969 21079994 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 21081531 21081556 trf 6 4.2 6 100 0 50 0 0 16 84 0.63 TGTTTT chr1 21082205 21082258 trf 2 26.5 2 100 0 106 49 0 50 0 1.00 GA chr1 21087224 21087284 trf 4 15.0 4 96 0 111 50 1 25 23 1.59 GATA chr1 21087283 21087457 trf 4 44.8 4 78 10 182 24 1 48 25 1.58 ATGG chr1 21087850 21087875 trf 4 6.2 4 100 0 50 52 0 24 24 1.48 AATG chr1 21091432 21091465 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 21100033 21100060 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 21100718 21100747 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 21103228 21103280 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 21104429 21104471 trf 4 10.0 4 89 5 57 23 2 23 50 1.61 TTGA chr1 21105109 21105151 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 21105463 21105519 trf 4 14.0 4 96 0 103 0 48 0 51 1.00 TTCC chr1 21107723 21107757 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 21107851 21107887 trf 2 18.0 2 94 0 63 0 2 50 47 1.15 TG chr1 21111376 21111434 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 21112658 21112702 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 21126437 21126476 trf 5 7.8 5 100 0 78 0 0 17 82 0.68 TTTTG chr1 21127385 21127550 trf 6 27.7 6 84 1 152 0 40 9 49 1.40 TCTCTC chr1 21127385 21127550 trf 8 20.8 8 82 1 152 0 40 9 49 1.40 TCTCTCTC chr1 21127676 21127728 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 21127750 21127790 trf 5 8.0 5 100 0 80 0 40 0 60 0.97 TTCCT chr1 21130076 21130143 trf 2 34.0 2 96 3 127 0 50 0 49 1.00 TC chr1 21130179 21130223 trf 12 3.5 13 81 12 56 6 31 11 50 1.65 ATCTCTGTCTCTT chr1 21130180 21130223 trf 6 6.8 6 82 10 50 4 32 11 51 1.59 TCTCTG chr1 21139693 21139752 trf 2 29.5 2 96 0 109 50 47 0 1 1.11 AC chr1 21140105 21140162 trf 3 19.0 3 100 0 114 66 33 0 0 0.92 ACA chr1 21140161 21140200 trf 3 13.0 3 100 0 78 66 0 0 33 0.92 ATA chr1 21144556 21144591 trf 4 8.8 4 93 0 61 2 25 20 51 1.61 TCTG chr1 21144588 21144679 trf 2 45.5 2 91 0 146 0 45 2 52 1.13 TC chr1 21144678 21144723 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 21144995 21145030 trf 4 8.8 4 100 0 70 74 25 0 0 0.82 AACA chr1 21145066 21145124 trf 4 14.5 4 100 0 116 50 0 24 25 1.50 TAGA chr1 21148615 21148651 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 21148650 21148696 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 21150261 21150306 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 21150798 21150853 trf 4 13.8 4 88 0 83 30 0 69 0 0.89 GAGG chr1 21150850 21150920 trf 2 35.0 2 97 0 131 51 0 48 0 1.00 GA chr1 21151328 21151392 trf 2 32.0 2 100 0 128 50 0 50 0 1.00 AG chr1 21152572 21152640 trf 5 14.0 5 76 11 54 0 0 23 76 0.79 GTTTT chr1 21152573 21152643 trf 8 9.7 7 75 20 56 0 0 22 77 0.78 TTTTGTT chr1 21152573 21152643 trf 12 6.5 11 71 22 51 0 0 22 77 0.78 TTTTGTTTGTT chr1 21154067 21154106 trf 6 6.7 6 83 16 55 0 0 17 82 0.68 TTGTTT chr1 21154071 21154106 trf 11 3.1 11 88 8 52 0 0 17 82 0.66 TTTTGTTTTTG chr1 21154226 21154287 trf 4 15.2 4 96 0 113 49 49 0 1 1.10 CAAC chr1 21155946 21155980 trf 12 2.8 12 86 0 50 0 50 0 50 1.00 CCTCCTCTTTCT chr1 21156271 21156309 trf 5 7.6 5 93 0 67 78 18 2 0 0.86 AAACA chr1 21158172 21158281 trf 4 26.5 4 87 5 155 0 47 2 49 1.15 CTTC chr1 21158278 21158323 trf 4 11.0 4 95 4 81 0 75 0 24 0.80 CCTC chr1 21158320 21158372 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 21158805 21158841 trf 4 9.2 4 93 6 65 0 22 0 77 0.76 TTTC chr1 21158806 21158841 trf 11 3.1 11 91 4 52 0 22 0 77 0.78 TTCTTTCTTTC chr1 21164921 21165094 trf 6 31.8 6 90 9 204 0 44 0 55 0.99 TTTCCC chr1 21164940 21165095 trf 5 28.6 5 94 5 170 0 45 0 54 0.99 CCTTT chr1 21165816 21165875 trf 12 4.8 12 79 8 64 50 15 33 0 1.44 AGAGAGAGAGAC chr1 21165816 21165863 trf 6 7.8 6 87 0 67 51 17 31 0 1.46 AGAGAC chr1 21174338 21174493 trf 6 25.8 6 97 0 247 0 61 0 38 0.96 CTCTCC chr1 21175906 21175968 trf 2 31.5 2 83 3 72 50 41 0 8 1.32 AC chr1 21176003 21176038 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 21178538 21178591 trf 4 13.2 4 95 0 97 49 0 26 24 1.51 ATAG chr1 21183198 21183312 trf 4 29.2 4 84 8 110 44 0 28 27 1.54 AGAT chr1 21185253 21185284 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 21187655 21187708 trf 2 26.5 2 100 0 106 50 0 49 0 1.00 AG chr1 21195346 21195394 trf 1 48.0 1 85 0 60 2 6 0 91 0.48 T chr1 21205095 21205120 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 21207486 21207533 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 21211093 21211124 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 21211463 21211605 trf 2 73.0 2 85 5 193 0 54 0 45 1.05 TC chr1 21215233 21215277 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 21217934 21217981 trf 2 24.5 2 91 8 80 0 0 51 48 1.00 TG chr1 21220156 21220186 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 21220739 21220813 trf 8 9.2 8 100 0 148 0 50 12 37 1.40 CTCTGCCT chr1 21222398 21222428 trf 8 3.8 8 90 0 51 0 16 36 46 1.47 TGTGTCTG chr1 21222920 21222946 trf 3 8.7 3 100 0 52 30 69 0 0 0.89 CCA chr1 21225672 21225712 trf 12 3.4 12 82 6 55 0 65 0 35 0.93 TCCCTCTCTCCC chr1 21225881 21225908 trf 6 4.5 6 100 0 54 0 85 0 14 0.61 CCCCCT chr1 21229059 21229098 trf 2 19.5 2 94 0 69 0 2 48 48 1.15 GT chr1 21231027 21231092 trf 2 32.5 2 84 0 85 4 3 44 47 1.39 TG chr1 21231161 21231209 trf 2 24.0 2 91 0 78 0 4 45 50 1.21 GT chr1 21234741 21234773 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 21238317 21238355 trf 11 3.2 12 85 10 51 18 2 44 34 1.64 TGTGTGTGAGAG chr1 21240676 21240758 trf 4 20.5 4 85 5 76 2 47 7 42 1.44 TCTC chr1 21244024 21244092 trf 2 34.0 2 93 0 118 0 2 47 50 1.16 GT chr1 21245911 21245995 trf 4 21.2 4 95 2 152 26 26 0 47 1.52 ATCT chr1 21247402 21247443 trf 11 3.2 13 90 10 59 0 0 12 87 0.53 TTTGGTTTTTTTT chr1 21247407 21247446 trf 1 39.0 1 89 0 51 0 0 7 92 0.39 T chr1 21250103 21250184 trf 2 41.0 2 82 2 101 44 48 3 3 1.38 CA chr1 21263500 21263532 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 21264115 21264148 trf 4 8.2 4 93 0 57 24 27 0 48 1.51 TCAT chr1 21269184 21269513 trf 6 48.2 6 93 6 298 35 14 50 0 1.43 GAGGCA chr1 21269285 21269485 trf 8 26.2 8 92 8 330 37 13 50 0 1.41 AGAGGCAG chr1 21270064 21270110 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 21271704 21271731 trf 4 6.8 4 100 0 54 22 77 0 0 0.76 CCCA chr1 21278615 21278664 trf 6 8.7 6 82 13 59 48 12 36 2 1.52 AGAGAC chr1 21285190 21285215 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 21285403 21285450 trf 9 5.4 9 80 10 53 38 23 4 34 1.74 CATTACTAA chr1 21285986 21286023 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 21289172 21289221 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 21290813 21290857 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 21290904 21290941 trf 4 9.2 4 100 0 74 51 0 48 0 1.00 AAGG chr1 21291193 21291257 trf 2 32.0 2 96 0 119 0 48 0 51 1.00 CT chr1 21294634 21294671 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 21296299 21296342 trf 2 21.0 2 95 4 77 48 0 48 2 1.14 GA chr1 21296879 21296909 trf 2 15.0 2 100 0 60 50 0 50 0 1.00 AG chr1 21297034 21297087 trf 6 8.7 6 76 12 54 0 3 20 75 0.96 GTTTTT chr1 21297433 21297472 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 21298157 21298193 trf 6 6.0 6 100 0 72 50 16 33 0 1.46 CAGAGA chr1 21298631 21298684 trf 5 10.4 5 88 8 72 79 20 0 0 0.74 AACAA chr1 21305254 21305311 trf 5 11.6 5 83 12 50 0 0 21 78 0.74 TTTGT chr1 21308611 21308686 trf 8 8.9 8 78 18 64 0 0 20 80 0.72 TTTTTTTG chr1 21308613 21308676 trf 12 5.4 12 74 9 51 0 0 22 77 0.76 TTTTTGTTTTTG chr1 21308644 21308682 trf 4 9.8 4 88 5 60 0 0 18 81 0.69 TTTG chr1 21311616 21311707 trf 2 47.5 2 80 8 100 42 0 56 1 1.06 GA chr1 21311618 21311776 trf 6 26.8 6 73 16 73 39 0 59 1 1.06 GAGAGG chr1 21316153 21316199 trf 2 23.5 2 95 4 85 50 50 0 0 1.00 CA chr1 21318098 21318171 trf 2 37.0 2 91 2 121 2 0 47 49 1.15 TG chr1 21318170 21318248 trf 2 39.0 2 89 0 120 47 0 52 0 1.00 GA chr1 21320006 21320065 trf 4 14.8 4 89 7 93 0 23 0 76 0.79 TTTC chr1 21320018 21320087 trf 8 9.0 8 90 7 74 0 14 0 85 0.60 TTTCTTTT chr1 21320022 21320084 trf 12 5.2 12 90 1 72 0 14 0 85 0.60 TTTCTTTTTTTT chr1 21320050 21320087 trf 1 37.0 1 88 0 56 0 5 0 94 0.30 T chr1 21326214 21326306 trf 8 11.5 8 95 0 166 0 60 11 27 1.31 TGCCCCTC chr1 21327094 21327137 trf 6 6.8 6 82 10 50 2 0 11 86 0.67 TTTTTG chr1 21327982 21328030 trf 4 12.0 4 79 16 55 72 25 2 0 0.95 AAAC chr1 21328225 21328318 trf 3 31.0 3 93 0 150 31 0 68 0 0.90 GGA chr1 21330316 21330344 trf 4 7.0 4 100 0 56 50 0 0 50 1.00 TTAA chr1 21331491 21331543 trf 1 52.0 1 80 0 59 90 9 0 0 0.46 A chr1 21331493 21331552 trf 6 10.3 6 81 17 56 86 13 0 0 0.57 AAAAAC chr1 21333032 21333069 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 21335804 21335856 trf 2 26.0 2 96 0 95 1 0 48 50 1.12 TG chr1 21335855 21335889 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 21338808 21338885 trf 6 13.5 6 75 17 58 76 23 0 0 0.78 AAAAAC chr1 21341934 21341969 trf 4 8.8 4 100 0 70 25 22 0 51 1.48 ATTC chr1 21345984 21346080 trf 5 19.2 5 98 0 147 0 75 0 25 0.81 CCCTC chr1 21346385 21346411 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 21349321 21349356 trf 7 5.0 7 89 10 54 82 17 0 0 0.66 AAACAAA chr1 21352807 21352842 trf 10 3.5 10 92 0 61 20 17 28 34 1.95 TGATCTCAGG chr1 21364970 21364995 trf 11 2.3 11 100 0 50 16 12 16 56 1.68 TTCTGTTAGTA chr1 21366832 21366857 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 21371636 21371671 trf 10 3.5 10 88 0 52 22 17 25 34 1.96 TGATCTCAGG chr1 21374849 21374916 trf 4 16.8 4 100 0 134 0 23 0 76 0.79 TTTC chr1 21377739 21377769 trf 6 5.0 6 91 0 51 80 20 0 0 0.72 CAAAAA chr1 21378611 21378638 trf 4 6.8 4 100 0 54 77 0 0 22 0.76 AAAT chr1 21379722 21379747 trf 11 2.3 11 100 0 50 16 12 16 56 1.68 TTCTGTTAGTA chr1 21381664 21381699 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 21382398 21382455 trf 5 11.0 5 85 7 51 80 10 1 7 0.96 CAAAA chr1 21383108 21383134 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 21387415 21387453 trf 5 7.8 5 83 16 53 81 0 0 18 0.69 AAAAT chr1 21390592 21390619 trf 4 6.8 4 100 0 54 22 0 0 77 0.76 TTTA chr1 21391980 21392021 trf 5 7.5 6 91 8 54 87 12 0 0 0.53 AAAACA chr1 21394398 21394423 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 ATAA chr1 21394911 21394977 trf 2 33.0 2 100 0 132 50 0 0 50 1.00 TA chr1 21397898 21397958 trf 5 11.6 5 98 1 102 63 36 0 0 0.95 AAACC chr1 21403390 21403424 trf 4 8.5 4 93 0 59 23 0 2 73 0.97 TATT chr1 21406841 21406877 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 21407880 21407965 trf 3 27.7 3 83 4 98 0 57 0 42 0.98 TCC chr1 21407883 21407976 trf 9 9.8 9 76 14 89 0 55 1 43 1.06 TCCTCCTCT chr1 21408168 21408193 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 21409415 21409448 trf 1 33.0 1 100 0 66 0 0 0 100 0.00 T chr1 21412067 21412106 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 21414171 21414220 trf 3 16.3 3 100 0 98 0 67 0 32 0.91 CCT chr1 21415727 21415787 trf 5 12.0 5 98 0 111 0 1 20 78 0.84 TTTTG chr1 21418881 21419033 trf 8 17.5 10 71 26 125 44 0 54 0 1.09 GAGAGAGAGA chr1 21420297 21420333 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 21422961 21423039 trf 6 13.0 6 98 0 120 0 38 11 50 1.39 GTCTCT chr1 21426829 21426931 trf 4 25.2 4 88 9 154 0 70 1 27 0.98 TCCC chr1 21427675 21427726 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 21429115 21429185 trf 4 17.5 4 96 0 131 0 75 0 24 0.80 TCCC chr1 21429932 21429991 trf 4 14.8 4 100 0 118 0 50 0 49 1.00 CCTT chr1 21429988 21430015 trf 4 6.8 4 100 0 54 0 74 0 25 0.83 CCTC chr1 21430014 21430102 trf 4 22.5 4 90 9 146 0 23 0 76 0.79 TTCT chr1 21431231 21431293 trf 4 15.5 4 80 6 63 0 67 0 32 0.91 CCTC chr1 21431630 21431677 trf 4 12.0 4 86 4 69 72 0 27 0 0.85 AAAG chr1 21431637 21431728 trf 8 11.4 8 87 4 76 59 0 40 0 0.97 AAAGGAAG chr1 21431638 21431728 trf 12 7.5 12 85 5 83 58 0 41 0 0.98 AAGAAAGGAAGG chr1 21431674 21431725 trf 4 12.8 4 95 0 93 49 0 50 0 1.00 AAGG chr1 21433812 21433853 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 21434674 21434712 trf 2 19.0 2 94 0 67 47 50 0 2 1.15 AC chr1 21434714 21434745 trf 2 15.5 2 93 0 53 54 0 45 0 0.99 AG chr1 21436481 21436511 trf 4 7.5 4 92 0 51 30 0 23 46 1.52 GATT chr1 21439018 21439048 trf 12 2.6 11 90 10 51 36 0 63 0 0.95 GGAGGGAAGGA chr1 21441999 21442057 trf 2 28.5 2 92 3 98 46 0 3 50 1.18 TA chr1 21446573 21446607 trf 12 2.8 13 86 13 54 0 41 0 58 0.98 TTTCTCTCTCTCC chr1 21449336 21449498 trf 8 19.6 8 70 17 57 33 3 3 59 1.30 TATATTTA chr1 21449424 21449494 trf 4 18.0 4 82 5 90 25 0 2 71 1.00 TATT chr1 21450298 21450342 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 21457334 21457381 trf 1 47.0 1 91 0 76 95 0 4 0 0.25 A chr1 21460754 21460785 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 21461999 21462039 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 21472198 21472252 trf 11 4.7 12 80 13 60 0 33 0 66 0.92 CCTTTCCTTTTT chr1 21472243 21472506 trf 5 52.4 5 92 2 276 0 68 0 31 0.90 TCCTC chr1 21473798 21473833 trf 6 5.8 6 89 0 52 51 8 0 40 1.33 ATATAC chr1 21473798 21473833 trf 12 2.9 12 95 0 61 51 8 0 40 1.33 ATATATATATAC chr1 21475125 21475232 trf 4 26.8 4 94 0 115 0 57 0 42 1.05 TTCC chr1 21477310 21477362 trf 7 7.7 7 85 6 72 1 1 11 84 0.78 TTTTGTT chr1 21478648 21478690 trf 5 8.6 5 89 5 68 78 19 2 0 0.86 AAACA chr1 21480070 21480119 trf 3 16.3 3 100 0 98 67 32 0 0 0.91 AAC chr1 21484109 21484171 trf 6 9.6 7 82 10 62 0 0 14 85 0.60 TTTGTTT chr1 21484113 21484149 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 21485536 21485571 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 21488282 21488312 trf 2 15.0 2 92 0 51 3 0 46 50 1.18 GT chr1 21489581 21489661 trf 4 20.0 4 94 0 142 1 48 0 50 1.08 CCTT chr1 21492750 21492785 trf 4 8.8 4 100 0 70 25 0 22 51 1.48 TATG chr1 21495131 21495158 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 21495363 21495524 trf 5 31.8 5 94 2 259 0 62 0 37 1.00 CTCCT chr1 21501596 21501698 trf 2 51.0 2 92 0 168 50 3 0 46 1.20 AT chr1 21503660 21503711 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 21507443 21507468 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 21508521 21508592 trf 4 18.2 4 94 5 128 0 47 0 52 1.00 TTCC chr1 21508590 21508685 trf 12 7.9 12 90 4 95 0 38 2 58 1.10 CTCTCTCTTTCT chr1 21508590 21508634 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 21508631 21508685 trf 4 13.5 4 88 0 72 0 29 3 66 1.09 TCTT chr1 21516690 21516756 trf 5 13.2 5 100 0 132 0 0 19 80 0.72 TGTTT chr1 21517763 21517794 trf 12 2.6 12 100 0 62 45 0 12 41 1.42 ATATATATGAGT chr1 21522657 21522688 trf 4 7.8 4 100 0 62 25 0 0 74 0.82 TTAT chr1 21526414 21526557 trf 2 72.5 2 76 2 74 0 41 9 48 1.36 TC chr1 21526469 21526638 trf 10 17.1 10 78 9 123 0 33 14 51 1.43 TCTGTCTCTC chr1 21526577 21526646 trf 6 11.7 6 78 9 61 0 36 11 52 1.38 CTGTCT chr1 21527063 21527091 trf 4 7.0 4 100 0 56 0 25 50 25 1.50 CGTG chr1 21530014 21530043 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 ACAA chr1 21531193 21531231 trf 5 7.8 5 97 2 69 84 15 0 0 0.63 AAAAC chr1 21532302 21532359 trf 6 10.5 6 77 21 63 70 1 0 28 0.98 ATATAA chr1 21534830 21534869 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 21534920 21535027 trf 2 54.5 2 90 3 173 50 0 48 0 1.07 AG chr1 21538695 21538747 trf 2 26.0 2 92 0 86 0 3 50 46 1.20 TG chr1 21542459 21542485 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 21542484 21542538 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 21546982 21547018 trf 4 9.0 4 100 0 72 25 0 0 75 0.81 TTTA chr1 21558284 21558317 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 21562189 21562298 trf 2 54.5 2 94 0 191 51 0 48 0 1.00 AG chr1 21562890 21563023 trf 4 34.2 4 87 8 195 27 25 0 46 1.53 ATCT chr1 21572487 21572521 trf 12 2.8 12 100 0 68 26 0 5 67 1.13 ATTTATTTATGT chr1 21572487 21572524 trf 4 9.2 4 87 0 56 27 0 5 67 1.12 ATTT chr1 21574021 21574112 trf 2 46.0 2 93 6 159 1 50 0 48 1.08 TC chr1 21579204 21579269 trf 7 9.3 7 77 12 71 13 4 0 81 0.84 TTTTTTA chr1 21591324 21591383 trf 4 15.0 4 85 3 84 23 25 0 50 1.49 TATC chr1 21593817 21593860 trf 2 22.5 2 90 9 72 0 0 48 51 1.00 TG chr1 21596955 21596989 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 TA chr1 21598212 21598238 trf 12 2.2 12 100 0 52 30 38 19 11 1.87 TGCACGCACACA chr1 21598302 21598433 trf 2 64.5 2 71 8 86 45 41 6 6 1.55 CA chr1 21602481 21602508 trf 3 9.0 3 100 0 54 33 33 33 0 1.58 CAG chr1 21602864 21602950 trf 3 28.7 3 100 0 172 67 0 32 0 0.91 AAG chr1 21603459 21603503 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 21603889 21603935 trf 4 11.8 4 95 4 85 50 23 26 0 1.50 GACA chr1 21603935 21603985 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 21605884 21605909 trf 12 2.1 12 100 0 50 52 8 8 32 1.60 ATAATTGACATA chr1 21606349 21606375 trf 3 8.7 3 100 0 52 69 30 0 0 0.89 AAC chr1 21609118 21609196 trf 2 39.0 2 86 0 111 2 2 44 50 1.29 GT chr1 21613850 21613885 trf 3 11.7 3 93 0 61 34 62 0 2 1.10 CAC chr1 21615001 21615055 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 21615054 21615109 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 21617054 21617109 trf 2 27.5 2 100 0 110 0 50 0 49 1.00 CT chr1 21619976 21620037 trf 4 15.2 4 96 0 113 26 0 73 0 0.83 GAGG chr1 21620038 21620104 trf 12 5.5 12 87 0 87 50 9 40 0 1.34 GAGAGAGACAGA chr1 21620038 21620104 trf 2 33.0 2 84 0 78 50 9 40 0 1.34 GA chr1 21641608 21641687 trf 2 39.5 2 90 0 122 0 49 1 49 1.09 TC chr1 21641806 21641855 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 21642950 21642987 trf 12 3.1 12 92 0 56 51 8 0 40 1.32 ATATATACATAT chr1 21650316 21650351 trf 4 8.8 4 87 0 52 0 22 25 51 1.48 TGTC chr1 21657463 21657494 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 21661734 21661776 trf 8 5.2 8 86 11 50 40 9 47 2 1.49 AGAGGCAG chr1 21661772 21661966 trf 8 23.1 8 75 11 165 28 1 55 14 1.46 AGAGGTGG chr1 21670709 21670897 trf 4 49.2 4 77 13 191 48 2 23 25 1.62 TAGA chr1 21674894 21674954 trf 5 12.0 5 100 0 120 60 20 20 0 1.37 AGAAC chr1 21683297 21683348 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 21688567 21688599 trf 8 4.0 8 100 0 64 0 37 0 62 0.95 TTCTTTCC chr1 21688599 21688697 trf 6 16.3 6 91 0 115 7 51 0 41 1.29 CTCTCT chr1 21700247 21700292 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 21700868 21700907 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 21702459 21702497 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 AG chr1 21703240 21703325 trf 6 13.7 6 79 7 71 49 25 5 18 1.70 TACACA chr1 21710171 21710198 trf 4 6.8 4 100 0 54 48 0 0 51 1.00 ATTA chr1 21712660 21712711 trf 2 25.5 2 100 0 102 50 0 0 49 1.00 AT chr1 21717520 21717831 trf 12 23.2 14 93 3 269 31 14 53 0 1.45 AGGGGCAGAGGCAG chr1 21717520 21717687 trf 8 22.4 8 84 11 178 30 13 55 0 1.42 AGGGGCAG chr1 21717614 21717832 trf 6 35.0 6 92 7 364 33 16 50 0 1.45 AGAGGC chr1 21718954 21719039 trf 2 42.0 2 79 2 62 3 7 41 48 1.47 GT chr1 21719617 21719642 trf 12 2.1 12 100 0 50 40 8 44 8 1.63 GGAGTCAGAGAA chr1 21720118 21720162 trf 4 10.8 4 85 7 54 2 2 18 77 0.98 TTTG chr1 21721539 21721619 trf 9 8.9 9 76 13 67 0 50 0 50 1.00 CTTCTTCTC chr1 21722681 21722734 trf 4 13.2 4 100 0 106 24 24 0 50 1.49 TATC chr1 21725544 21725595 trf 2 25.0 2 96 4 93 49 0 1 49 1.12 TA chr1 21730525 21730570 trf 2 22.5 2 95 0 81 51 46 0 2 1.13 AC chr1 21730567 21730690 trf 12 10.4 12 89 3 133 52 11 36 0 1.38 ACAGAGAGAGAG chr1 21730567 21730666 trf 6 16.8 6 93 4 121 51 9 39 0 1.34 ACAGAG chr1 21730659 21730690 trf 4 7.8 4 92 0 53 54 19 25 0 1.44 AGAC chr1 21737860 21737897 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 21739264 21739326 trf 2 31.0 2 100 0 124 50 0 0 50 1.00 AT chr1 21740132 21740221 trf 4 22.2 4 92 0 142 0 30 0 69 0.89 CTTT chr1 21740296 21740422 trf 5 25.6 5 97 1 139 47 0 52 0 1.00 GAGGA chr1 21741860 21741916 trf 2 28.5 2 96 3 105 50 50 0 0 1.00 CA chr1 21747023 21747056 trf 2 17.0 2 93 6 59 0 0 51 48 1.00 TG chr1 21747857 21747915 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 21749141 21749167 trf 12 2.2 12 100 0 52 53 15 7 23 1.67 AACTATGAATAC chr1 21759540 21759665 trf 4 32.0 4 68 13 64 19 2 27 51 1.59 ATGT chr1 21759775 21759807 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 21767399 21767471 trf 2 37.5 2 86 8 105 47 2 0 50 1.15 TA chr1 21768514 21768555 trf 2 20.5 2 89 0 64 53 43 2 0 1.13 AC chr1 21768599 21768659 trf 2 30.5 2 96 3 113 50 0 0 50 1.00 AT chr1 21770417 21770468 trf 4 12.8 4 91 0 84 72 0 27 0 0.85 AAAG chr1 21771690 21771726 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 21772532 21772564 trf 12 2.7 12 100 0 64 50 9 40 0 1.35 AGAGAGACAGAG chr1 21773462 21773514 trf 2 26.0 2 96 0 95 51 0 48 0 1.00 GA chr1 21779349 21779406 trf 1 57.0 1 78 0 60 89 8 0 1 0.55 A chr1 21779477 21779503 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 21779502 21779599 trf 2 48.5 2 93 4 169 49 1 49 0 1.07 GA chr1 21782585 21782629 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 21783623 21783657 trf 6 5.7 6 100 0 68 0 0 14 85 0.60 TTTTGT chr1 21792878 21792913 trf 5 7.0 5 100 0 70 80 0 0 20 0.72 AATAA chr1 21800519 21800561 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 21804772 21804806 trf 1 34.0 1 87 0 50 94 0 5 0 0.32 A chr1 21806864 21806898 trf 4 8.5 4 100 0 68 0 73 0 26 0.83 CTCC chr1 21813798 21813860 trf 2 31.0 2 93 0 106 53 46 0 0 1.00 CA chr1 21816605 21816661 trf 6 8.8 6 81 11 67 0 76 0 23 0.78 CCTCCC chr1 21819011 21819036 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 21822822 21822887 trf 4 16.2 4 100 0 130 26 24 0 49 1.51 ATCT chr1 21828346 21828376 trf 2 15.0 2 92 0 51 3 0 50 46 1.18 TG chr1 21831697 21831738 trf 12 3.5 12 83 9 50 68 4 0 26 1.10 ATAAATAACATA chr1 21832554 21832612 trf 2 29.0 2 85 0 80 48 44 6 0 1.29 AC chr1 21834096 21834394 trf 7 43.6 7 91 7 426 0 60 0 39 0.97 CTCTTCC chr1 21834827 21834873 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 21837313 21837367 trf 2 27.0 2 92 0 90 48 1 1 48 1.23 AT chr1 21838952 21838983 trf 11 2.7 12 90 10 55 29 6 22 41 1.78 TTTACAGAGTGT chr1 21839320 21839393 trf 8 9.4 8 71 5 51 9 8 39 42 1.67 TGTGTATG chr1 21841280 21841398 trf 3 39.7 3 75 14 75 5 59 0 34 1.25 CTC chr1 21843898 21843947 trf 12 4.1 12 91 0 80 40 0 8 51 1.32 TGTATATATATA chr1 21843900 21843948 trf 2 24.0 2 86 0 69 43 0 6 50 1.27 TA chr1 21844929 21844957 trf 8 3.5 8 100 0 56 0 0 10 89 0.49 TTTTGTTT chr1 21851848 21851886 trf 2 19.0 2 94 0 67 0 2 47 50 1.15 TG chr1 21851983 21852034 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 21855477 21855512 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 21858927 21858962 trf 12 2.9 12 86 0 52 37 0 40 22 1.55 TGAATGAATGGA chr1 21858972 21859005 trf 4 8.2 4 100 0 66 48 0 51 0 1.00 GAAG chr1 21859002 21859113 trf 4 27.8 4 94 0 132 34 0 65 0 0.93 AGGG chr1 21861889 21861950 trf 5 12.2 5 100 0 122 0 19 0 80 0.72 TTTTC chr1 21862872 21862943 trf 5 14.2 5 95 0 52 30 0 69 0 0.89 GAAGG chr1 21862884 21862945 trf 5 12.2 5 98 0 95 26 0 73 0 0.83 AGGGG chr1 21863698 21863736 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 21864003 21864090 trf 4 21.8 4 95 0 156 0 26 0 73 0.83 TTTC chr1 21866782 21866859 trf 12 6.3 12 80 7 75 35 1 62 1 1.12 GGGAAGGAGGGA chr1 21866792 21866867 trf 4 18.8 4 85 0 78 36 0 64 0 0.94 GGAG chr1 21869084 21869178 trf 2 47.0 2 84 0 125 50 7 42 0 1.30 AG chr1 21884194 21884281 trf 8 10.6 8 92 4 147 50 24 25 0 1.49 ACAGAGAC chr1 21885234 21885275 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 21890125 21890151 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AACA chr1 21891259 21891304 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 21898396 21898434 trf 3 12.7 3 100 0 76 31 0 0 68 0.90 TTA chr1 21898689 21898787 trf 4 23.5 4 85 8 106 66 1 32 0 0.99 AAAG chr1 21898707 21898742 trf 2 17.5 2 93 0 61 54 0 45 0 0.99 AG chr1 21907460 21907526 trf 8 8.1 8 76 3 51 48 12 3 36 1.56 ATATATAC chr1 21912004 21912057 trf 5 10.6 5 97 0 88 35 20 3 39 1.71 CATTA chr1 21912326 21912387 trf 2 30.5 2 96 0 113 52 0 47 0 1.00 AG chr1 21915407 21915440 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 21915441 21915536 trf 12 7.4 13 68 14 63 50 13 33 2 1.54 AGAGAAGAGAGAC chr1 21915441 21915538 trf 10 9.7 10 79 0 77 50 13 34 2 1.53 AGAGAGACAG chr1 21915441 21915538 trf 2 48.5 2 74 0 50 50 13 34 2 1.53 AG chr1 21915445 21915536 trf 8 10.9 8 74 9 65 50 14 32 2 1.55 AGAGAGAC chr1 21915748 21915805 trf 5 11.8 5 84 3 55 75 0 24 0 0.80 AAAAG chr1 21924367 21924401 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 21924412 21924454 trf 2 21.0 2 95 0 75 47 0 52 0 1.00 AG chr1 21928246 21928281 trf 7 5.3 7 86 13 56 88 11 0 0 0.51 AACAAAA chr1 21930346 21930401 trf 10 5.2 10 80 10 56 83 16 0 0 0.64 AAAAAAACAA chr1 21930348 21930401 trf 6 8.7 6 80 12 63 83 16 0 0 0.66 AAAAAC chr1 21930356 21930400 trf 10 4.3 10 85 5 61 81 18 0 0 0.68 AAACAAAAAC chr1 21933141 21933169 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 21933883 21933937 trf 8 6.5 8 82 14 65 37 37 14 11 1.82 CCAGCAAT chr1 21935761 21935815 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 CT chr1 21938777 21938818 trf 6 6.8 6 82 0 55 2 46 12 39 1.54 TCCCTG chr1 21941430 21941459 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 21944404 21944508 trf 2 52.0 2 90 0 163 50 45 4 0 1.23 AC chr1 21945527 21945579 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 21947275 21947360 trf 8 10.6 8 87 0 107 1 42 5 50 1.34 CTCTCTCT chr1 21947275 21947360 trf 6 14.2 6 87 0 107 1 42 5 50 1.34 CTCTCT chr1 21947361 21947426 trf 2 33.0 2 96 3 123 0 0 50 49 1.00 GT chr1 21949851 21949880 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 21949880 21949957 trf 4 19.2 4 80 0 64 49 7 40 2 1.45 AGAG chr1 21957767 21957819 trf 3 17.3 3 91 0 86 63 0 1 34 1.06 ATA chr1 21958634 21958701 trf 9 6.7 9 81 18 71 44 2 0 52 1.16 ATATATATT chr1 21958634 21958737 trf 2 56.0 2 75 16 80 42 5 0 51 1.26 AT chr1 21958635 21958735 trf 7 14.0 7 76 15 82 42 6 0 52 1.26 TATATAT chr1 21960316 21960368 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 21968765 21968821 trf 5 11.6 5 87 9 73 0 3 17 78 0.89 TTTTG chr1 21969476 21969534 trf 2 29.0 2 92 0 98 51 46 0 1 1.11 AC chr1 21971470 21971766 trf 4 76.5 4 70 16 133 50 3 20 26 1.63 ATAG chr1 21972371 21972397 trf 4 6.5 4 100 0 52 76 0 0 23 0.78 AAAT chr1 21973810 21973889 trf 2 40.5 2 83 5 99 46 49 2 1 1.23 CA chr1 21975258 21975306 trf 2 25.5 2 81 12 57 56 0 43 0 0.99 AG chr1 21975579 21975634 trf 4 14.0 4 96 3 103 25 25 0 49 1.51 ATCT chr1 21981300 21981338 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 21983358 21983395 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 21983612 21983677 trf 11 5.8 11 85 7 87 89 10 0 0 0.49 AAAACAAAAAA chr1 21983612 21983677 trf 1 65.0 1 78 0 67 89 10 0 0 0.49 A chr1 21983619 21983681 trf 9 7.3 9 85 10 87 88 11 0 0 0.51 AAAAAAAAC chr1 21983680 21983711 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 21986417 21986459 trf 6 7.0 6 91 0 66 33 47 14 4 1.65 GCACAC chr1 21987876 21987906 trf 11 2.6 11 94 5 51 26 0 0 73 0.84 TTATTTTATTA chr1 21990501 21990565 trf 2 32.0 2 100 0 128 50 0 0 50 1.00 AT chr1 21991238 21991301 trf 2 31.5 2 100 0 126 50 0 49 0 1.00 AG chr1 22001469 22001495 trf 12 2.2 12 100 0 52 0 19 0 80 0.71 TCTTTTTTCTTT chr1 22004309 22004335 trf 12 2.2 12 100 0 52 15 42 0 42 1.47 CTTCCCCTAATT chr1 22009592 22009636 trf 3 14.7 3 100 0 88 0 0 65 34 0.93 GTG chr1 22018154 22018193 trf 5 7.8 5 100 0 78 82 17 0 0 0.68 AAAAC chr1 22018909 22018962 trf 4 12.8 4 84 15 72 75 22 1 0 0.90 CAAA chr1 22027239 22027276 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 22028546 22028602 trf 4 14.0 4 84 0 76 67 5 1 25 1.21 AATA chr1 22029422 22029472 trf 2 25.0 2 91 0 82 52 46 0 2 1.12 CA chr1 22032130 22032222 trf 4 23.8 4 89 6 145 0 25 0 75 0.81 TTTC chr1 22033082 22033108 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 22033930 22033990 trf 2 30.0 2 93 0 102 53 0 46 0 1.00 AG chr1 22033988 22034018 trf 4 7.5 4 100 0 60 50 0 50 0 1.00 AGGA chr1 22034295 22034332 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 22035672 22035720 trf 4 12.0 4 100 0 96 50 0 25 25 1.50 GATA chr1 22037126 22037161 trf 4 9.0 4 87 6 54 74 0 2 22 0.95 TAAA chr1 22049118 22049152 trf 6 5.7 6 85 0 50 17 76 0 5 0.98 ACCCCC chr1 22050620 22050657 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 22050998 22051027 trf 4 7.2 4 100 0 58 24 24 0 51 1.48 TTCA chr1 22064069 22064127 trf 4 14.5 4 96 0 107 27 0 72 0 0.85 GAGG chr1 22064259 22064304 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 22066220 22066255 trf 4 9.0 4 93 6 63 77 22 0 0 0.78 AAAC chr1 22068487 22068523 trf 4 9.0 4 100 0 72 50 25 0 25 1.50 ATAC chr1 22069294 22069367 trf 2 36.5 2 97 0 137 49 1 49 0 1.09 GA chr1 22069376 22069407 trf 6 5.2 6 100 0 62 32 0 67 0 0.91 GGGAGA chr1 22073807 22073854 trf 12 3.8 12 88 8 60 65 0 0 34 0.93 AATAAAATAATT chr1 22073818 22073854 trf 3 12.0 3 88 11 56 66 0 0 33 0.92 TAA chr1 22079788 22079825 trf 11 3.3 11 85 7 56 64 0 13 21 1.27 ATAAAGATAGA chr1 22085030 22085066 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 22089236 22089341 trf 12 8.8 12 83 5 124 0 47 9 42 1.36 CCTCTCTCTCTG chr1 22089237 22089341 trf 2 52.0 2 70 27 53 0 47 9 43 1.36 CT chr1 22089255 22089359 trf 10 10.4 10 77 14 58 0 48 10 41 1.38 CTCTCTGCCT chr1 22089589 22089651 trf 2 31.5 2 88 3 90 50 1 3 45 1.27 AT chr1 22090455 22090485 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 22090561 22090642 trf 2 41.0 2 87 2 119 50 44 2 2 1.28 CA chr1 22101440 22101470 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 22101469 22101528 trf 2 29.5 2 94 0 100 52 1 45 0 1.10 AG chr1 22102250 22102412 trf 7 23.6 7 91 6 253 0 0 27 72 0.84 TTTTGGT chr1 22105134 22105277 trf 6 23.8 6 97 0 250 0 63 0 36 0.95 CTCTCC chr1 22110799 22110941 trf 10 13.9 10 70 10 72 45 31 7 15 1.73 TACACACATA chr1 22113821 22113915 trf 4 24.2 4 80 6 113 46 2 27 23 1.63 ATAG chr1 22115178 22115210 trf 3 11.0 3 93 6 57 0 0 34 65 0.93 TTG chr1 22116499 22116537 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 22118158 22118201 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 22123021 22123051 trf 4 7.5 4 100 0 60 73 0 0 26 0.84 TAAA chr1 22127203 22127240 trf 2 18.5 2 88 0 56 54 43 0 2 1.14 AC chr1 22129297 22129378 trf 2 38.5 2 78 9 72 46 2 4 45 1.37 TA chr1 22133387 22133437 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 22138144 22138199 trf 6 9.5 6 88 7 87 36 0 63 0 0.95 GAGAGG chr1 22138209 22138256 trf 4 11.8 4 100 0 94 48 0 51 0 1.00 AGGA chr1 22138255 22138339 trf 12 6.4 13 76 16 84 60 0 38 1 1.04 GGAAAGGAAAGGA chr1 22147468 22147541 trf 4 18.2 4 97 0 137 0 27 0 72 0.85 CTTT chr1 22147962 22147989 trf 4 6.8 4 100 0 54 22 0 0 77 0.76 TTTA chr1 22165804 22165832 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 ACAA chr1 22170226 22170251 trf 4 6.2 4 100 0 50 24 0 0 76 0.80 TATT chr1 22173078 22173128 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 22174538 22174578 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 22184247 22184279 trf 2 16.0 2 93 0 55 53 0 46 0 1.00 AG chr1 22184276 22184322 trf 4 11.5 4 100 0 92 26 0 73 0 0.83 GAGG chr1 22184327 22184391 trf 4 16.0 4 96 0 119 51 0 48 0 1.00 GGAA chr1 22187276 22187305 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 22197885 22197914 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 22197960 22198002 trf 2 21.0 2 95 0 75 50 47 0 2 1.14 CA chr1 22198127 22198173 trf 3 15.3 3 90 0 65 4 30 28 36 1.76 TGC chr1 22199880 22200058 trf 6 31.2 6 81 14 207 34 0 15 50 1.44 TGTATA chr1 22200744 22200807 trf 6 10.5 6 96 0 99 50 0 44 4 1.23 AGAGAG chr1 22200744 22200807 trf 8 7.9 8 92 0 99 50 0 44 4 1.23 AGAGAGAG chr1 22202880 22202915 trf 5 7.0 5 93 0 52 80 5 0 14 0.89 AATAA chr1 22203214 22203277 trf 10 6.3 10 79 0 72 36 3 11 49 1.54 TATATATGTA chr1 22205921 22206007 trf 12 8.0 10 77 17 52 0 52 0 47 1.00 TCTCCTCTCC chr1 22205951 22206006 trf 2 28.5 2 89 7 87 0 52 0 47 1.00 CT chr1 22208062 22208091 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 22209889 22209931 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 22211059 22211093 trf 2 17.0 2 93 0 59 2 0 47 50 1.16 GT chr1 22211092 22211137 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 22217977 22218006 trf 5 6.0 5 92 8 51 82 17 0 0 0.66 CAAAA chr1 22225241 22225278 trf 2 18.5 2 94 0 65 2 0 45 51 1.15 TG chr1 22225740 22225778 trf 3 13.3 3 89 10 62 71 28 0 0 0.87 ACA chr1 22226110 22226153 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 22228087 22228129 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 22229672 22229703 trf 5 6.0 5 96 3 53 0 0 22 77 0.77 TGTTT chr1 22237526 22237561 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 22237558 22237591 trf 4 8.2 4 87 12 50 0 21 27 51 1.48 TGTC chr1 22241136 22241179 trf 5 8.4 5 97 2 77 0 0 58 41 0.98 TGGTG chr1 22241178 22241231 trf 2 26.5 2 84 0 70 50 5 43 0 1.25 GA chr1 22245751 22245797 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 22247483 22247555 trf 3 24.0 3 76 0 72 41 2 55 0 1.14 AGG chr1 22256427 22256495 trf 2 34.0 2 96 0 127 50 48 0 1 1.10 AC chr1 22257765 22257816 trf 2 25.5 2 91 0 84 52 1 45 0 1.12 AG chr1 22257817 22257899 trf 4 20.2 4 98 1 155 74 0 25 0 0.82 AAAG chr1 22257994 22258161 trf 5 33.2 5 98 0 316 40 0 59 0 0.97 GGAGA chr1 22258958 22259007 trf 2 24.5 2 95 0 89 48 48 0 2 1.12 CA chr1 22266168 22266196 trf 3 9.3 3 100 0 56 67 32 0 0 0.91 ACA chr1 22270444 22270508 trf 10 6.3 10 87 3 56 6 0 7 85 0.73 TTTGTTTTAT chr1 22270444 22270492 trf 8 5.3 10 92 7 61 0 0 10 89 0.48 TTTGTTTTGT chr1 22270444 22270492 trf 5 10.6 5 95 4 61 0 0 10 89 0.48 TTTGT chr1 22270448 22270492 trf 1 44.0 1 81 0 52 0 0 9 90 0.44 T chr1 22275122 22275150 trf 12 2.3 12 100 0 56 0 57 0 42 0.99 CTTCCTCCTCCT chr1 22276031 22276058 trf 2 13.5 2 100 0 54 51 0 48 0 1.00 AG chr1 22277838 22277865 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 22280985 22281082 trf 6 15.8 6 70 23 69 35 0 64 0 0.93 GGAGAG chr1 22280991 22281510 trf 12 43.4 12 68 21 90 39 0 59 0 1.04 GGAGAGGGAGGA chr1 22281166 22281509 trf 3 119.0 3 69 11 216 41 0 57 0 1.01 GAG chr1 22281166 22281503 trf 9 39.3 9 72 18 238 41 0 57 0 1.01 GAGGAGAAG chr1 22281516 22281601 trf 5 16.8 5 97 2 161 61 0 38 0 0.96 AAGAG chr1 22285266 22285312 trf 3 15.3 3 90 0 74 28 0 4 67 1.10 TAT chr1 22287626 22287651 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 22288126 22288176 trf 2 25.0 2 95 0 91 0 52 0 48 1.00 CT chr1 22289497 22289641 trf 4 38.8 4 76 16 132 29 24 1 45 1.62 TATC chr1 22294499 22294552 trf 2 27.0 2 92 3 90 1 0 49 49 1.12 GT chr1 22298786 22299083 trf 5 56.4 5 79 10 245 0 68 0 31 0.93 CTCCC chr1 22299080 22299120 trf 5 8.0 5 82 0 53 5 35 0 60 1.19 CCTTT chr1 22299081 22299140 trf 10 6.0 10 80 9 68 3 30 0 66 1.08 CTTTCCTTTT chr1 22301286 22301338 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 AT chr1 22301353 22301411 trf 4 14.5 4 96 0 98 0 70 0 29 0.87 TCCC chr1 22303039 22303074 trf 2 17.5 2 90 0 52 2 0 42 54 1.15 TG chr1 22303593 22303724 trf 10 13.1 10 85 0 145 9 0 40 49 1.36 TGTGTGTGTG chr1 22303593 22303724 trf 4 32.8 4 84 0 145 9 0 40 49 1.36 TGTG chr1 22307555 22307597 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 22307868 22307921 trf 10 5.2 10 84 11 72 37 1 60 0 1.08 GAGGGAAGGA chr1 22310372 22310398 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 22312229 22312336 trf 2 53.5 2 96 0 124 40 50 9 0 1.35 CA chr1 22315915 22315957 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 22317800 22317826 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 22317803 22317855 trf 8 6.2 8 80 8 50 11 3 38 46 1.59 TGTGTGTA chr1 22319040 22319086 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 22321393 22321442 trf 2 24.5 2 95 0 89 0 0 48 51 1.00 GT chr1 22321649 22321682 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 22327576 22327993 trf 4 104.2 4 97 0 402 24 36 0 38 1.56 TATC chr1 22328149 22328185 trf 12 2.9 12 95 4 63 38 16 0 44 1.48 TATCATATCATA chr1 22329614 22329657 trf 1 43.0 1 90 0 68 95 0 4 0 0.27 A chr1 22330431 22330471 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 GA chr1 22331700 22331739 trf 2 19.5 2 94 0 69 48 48 2 0 1.15 AC chr1 22335721 22335778 trf 2 31.5 2 80 19 72 0 0 43 56 0.99 TG chr1 22336063 22336088 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 22336916 22336978 trf 2 30.5 2 96 3 115 50 48 0 1 1.10 AC chr1 22338747 22338795 trf 8 5.4 9 82 7 55 0 2 10 87 0.62 TTTTTTGTT chr1 22341045 22341071 trf 4 6.5 4 100 0 52 0 0 26 73 0.84 TGTT chr1 22344453 22344497 trf 2 22.0 2 95 0 79 47 0 2 50 1.13 AT chr1 22344496 22344534 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 22348101 22348159 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 AT chr1 22354092 22354177 trf 8 10.6 8 97 0 161 50 0 49 0 1.00 GGAGAAAG chr1 22356109 22356134 trf 5 5.0 5 100 0 50 80 20 0 0 0.72 AAAAC chr1 22357968 22358031 trf 2 31.5 2 100 0 126 0 50 0 49 1.00 CT chr1 22358031 22358065 trf 2 17.0 2 87 0 50 2 0 44 52 1.16 GT chr1 22359656 22359727 trf 2 35.5 2 91 0 115 1 2 49 46 1.25 GT chr1 22360623 22360860 trf 6 39.8 6 88 6 191 43 0 33 21 1.59 AGATAG chr1 22364339 22364386 trf 4 11.8 4 81 0 58 2 68 0 29 1.02 CTCC chr1 22364386 22364511 trf 4 31.5 4 93 1 117 0 35 0 64 1.00 TCTT chr1 22364438 22364481 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 22370810 22370852 trf 5 8.8 5 82 7 52 80 14 2 2 0.90 AAAAC chr1 22373896 22373924 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 22374023 22374076 trf 1 53.0 1 90 0 79 1 1 1 94 0.40 T chr1 22377638 22377663 trf 8 3.1 8 100 0 50 12 12 24 52 1.72 TACTTGTG chr1 22379322 22379363 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 22380518 22380559 trf 2 20.5 2 89 0 55 7 0 46 46 1.30 TG chr1 22384324 22384373 trf 2 24.5 2 95 0 89 2 0 48 48 1.12 GT chr1 22384727 22384776 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 22389562 22389706 trf 2 73.0 2 84 10 181 2 50 1 45 1.21 TC chr1 22392023 22392056 trf 6 5.7 6 92 7 59 0 0 15 84 0.61 TTTTTG chr1 22392686 22392738 trf 2 26.0 2 96 0 95 0 0 48 51 1.00 TG chr1 22396862 22396913 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 22402587 22402621 trf 4 8.8 4 87 6 52 50 0 50 0 1.00 GGAA chr1 22409797 22409872 trf 8 9.5 8 81 7 82 0 0 21 78 0.75 TTTTGGTT chr1 22409797 22409871 trf 7 10.6 7 76 13 64 0 0 21 78 0.75 TTTTGGT chr1 22419349 22419381 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 22419387 22419462 trf 12 6.6 12 71 11 50 53 13 30 2 1.53 AGAGAGACAGAC chr1 22419797 22419855 trf 6 9.5 6 88 3 89 32 17 1 48 1.57 TATCTA chr1 22421074 22421114 trf 7 5.7 7 96 0 71 0 0 22 77 0.77 TTTTTGG chr1 22425141 22425172 trf 12 2.5 12 94 5 53 48 22 9 19 1.78 CTAAAGTAACCA chr1 22427975 22428021 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 22428057 22428139 trf 6 13.7 6 89 0 101 51 7 41 0 1.30 AGAGAG chr1 22467284 22467361 trf 2 37.5 2 71 19 52 3 6 44 45 1.48 TG chr1 22467310 22467363 trf 11 4.1 13 79 16 65 5 9 41 43 1.61 TGTGCTGTGTGTA chr1 22467471 22467507 trf 4 8.8 4 93 6 63 22 0 0 77 0.76 TTTA chr1 22468930 22468965 trf 4 8.8 4 93 0 61 0 2 22 74 0.95 TTTG chr1 22469564 22469624 trf 9 6.6 9 75 17 61 55 18 3 23 1.58 ATATAACAC chr1 22477257 22477286 trf 4 7.2 4 100 0 58 51 0 24 24 1.48 AATG chr1 22478619 22478653 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 TA chr1 22481839 22481872 trf 4 8.2 4 93 0 57 45 24 0 30 1.53 TCAA chr1 22485707 22485766 trf 2 29.5 2 96 0 109 0 47 0 52 1.00 TC chr1 22485765 22485808 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 22492699 22492725 trf 4 6.5 4 100 0 52 53 0 23 23 1.46 AATG chr1 22496430 22496455 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 22501673 22501714 trf 2 20.5 2 89 0 64 46 48 4 0 1.23 AC chr1 22503388 22503445 trf 7 8.1 7 75 21 57 70 1 3 24 1.13 AATAAAT chr1 22503388 22503457 trf 4 17.5 4 76 20 58 69 2 4 23 1.20 AATA chr1 22505394 22505431 trf 1 37.0 1 88 0 56 0 5 0 94 0.30 T chr1 22508735 22508763 trf 7 4.0 7 100 0 56 85 0 0 14 0.59 AAAAAAT chr1 22510892 22510919 trf 7 3.9 7 100 0 54 88 0 0 11 0.50 AAAAAAT chr1 22515512 22515554 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 22516938 22516986 trf 4 12.0 4 90 0 78 29 0 70 0 0.87 GGAG chr1 22522703 22522760 trf 4 14.2 4 100 0 114 49 0 24 26 1.51 TAGA chr1 22525040 22525235 trf 6 31.8 6 91 4 318 34 1 63 1 1.08 GAGAGG chr1 22528280 22528332 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 AG chr1 22535373 22535427 trf 2 27.0 2 100 0 108 0 0 50 50 1.00 TG chr1 22537639 22537707 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 22539551 22539607 trf 1 56.0 1 78 0 58 89 0 10 0 0.49 A chr1 22545869 22545940 trf 5 14.2 5 100 0 142 80 19 0 0 0.72 ACAAA chr1 22552558 22552608 trf 2 26.0 2 80 8 50 0 54 0 46 1.00 TC chr1 22552595 22552660 trf 4 16.0 4 75 9 51 3 64 0 32 1.09 CCCT chr1 22553585 22553623 trf 2 19.0 2 94 0 67 0 0 52 47 1.00 GT chr1 22553882 22553907 trf 10 2.5 10 100 0 50 0 40 8 52 1.31 TCTCTCTCTG chr1 22553997 22554089 trf 6 15.3 6 85 8 62 0 39 0 60 0.97 CTCTTT chr1 22553997 22554056 trf 2 30.0 2 93 3 102 0 47 0 52 1.00 CT chr1 22554077 22554115 trf 8 4.8 8 83 9 51 0 10 2 86 0.66 TTTTTTCT chr1 22554250 22554352 trf 8 12.8 8 81 0 105 0 39 7 52 1.30 TCTCTCTC chr1 22554250 22554352 trf 6 17.0 6 81 0 105 0 39 7 52 1.30 TCTCTC chr1 22554250 22554352 trf 12 8.7 12 81 4 118 0 39 7 52 1.30 TCTCTCTCTCTG chr1 22554354 22554390 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 22555901 22555972 trf 6 11.8 6 100 0 142 16 0 49 33 1.47 TTAGGG chr1 22559056 22559099 trf 4 10.5 4 87 2 59 53 41 0 4 1.21 AACC chr1 22563119 22563209 trf 2 45.5 2 85 2 110 42 0 57 0 0.98 AG chr1 22569823 22569848 trf 10 2.5 10 100 0 50 72 8 20 0 1.10 AAAGAAAAGC chr1 22569848 22569986 trf 5 27.6 5 98 0 267 41 0 58 0 0.98 GAAGG chr1 22573123 22573172 trf 4 12.2 4 86 0 71 69 0 6 24 1.11 AATA chr1 22574653 22574730 trf 2 38.5 2 94 0 136 0 46 0 53 1.00 TC chr1 22577770 22577810 trf 4 10.0 4 100 0 80 25 0 25 50 1.50 TATG chr1 22579125 22579153 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 22580224 22580286 trf 6 10.5 6 96 3 117 85 0 14 0 0.60 AAAAAG chr1 22582099 22582154 trf 2 27.5 2 100 0 110 50 0 0 49 1.00 AT chr1 22582718 22582794 trf 4 19.5 4 86 5 93 47 3 21 27 1.68 TAGA chr1 22583498 22583538 trf 4 10.2 4 89 5 64 0 0 25 75 0.81 TTTG chr1 22583621 22583690 trf 2 37.0 2 80 13 85 0 56 0 43 0.99 TC chr1 22583692 22583729 trf 4 9.2 4 100 0 74 24 24 0 51 1.49 TATC chr1 22584206 22584236 trf 6 5.0 6 100 0 60 0 0 16 83 0.65 TTTTTG chr1 22584307 22584332 trf 7 3.6 7 100 0 50 88 12 0 0 0.53 AAAAACA chr1 22584320 22584360 trf 9 4.6 9 90 3 55 75 25 0 0 0.81 AAAACAACA chr1 22584324 22584356 trf 3 10.7 3 93 0 55 71 28 0 0 0.86 AAC chr1 22584559 22584988 trf 6 69.0 6 65 13 109 39 36 1 22 1.62 TAACCC chr1 22588119 22588162 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 22588416 22588457 trf 10 4.1 10 80 0 55 51 12 0 36 1.40 ATATATACAT chr1 22588454 22588481 trf 12 2.2 12 100 0 54 51 29 0 18 1.46 ATACACACACAT chr1 22591134 22591159 trf 2 12.5 2 100 0 50 48 0 0 52 1.00 TA chr1 22597294 22597341 trf 6 8.0 6 95 4 87 0 0 51 48 1.00 GGTTTG chr1 22599426 22599465 trf 2 19.5 2 100 0 78 51 0 0 48 1.00 AT chr1 22599832 22599871 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 22599870 22599896 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 22601519 22601550 trf 2 15.5 2 93 0 53 3 0 45 51 1.17 TG chr1 22601549 22601624 trf 2 38.0 2 95 2 134 52 0 0 48 1.00 TA chr1 22603366 22603404 trf 5 7.4 5 96 3 67 78 21 0 0 0.74 AAAAC chr1 22606437 22606462 trf 2 12.5 2 100 0 50 48 0 0 52 1.00 TA chr1 22606461 22606494 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 22606501 22606533 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 22609722 22609747 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 22610088 22610158 trf 6 11.7 6 87 6 106 80 0 20 0 0.72 AAAAAG chr1 22611434 22611482 trf 10 4.3 12 72 20 50 18 8 33 39 1.81 TATGCATGTGTG chr1 22611435 22611478 trf 10 4.0 11 77 17 54 18 9 34 37 1.83 ATGCATGTGTG chr1 22618344 22618372 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 GTTT chr1 22624364 22624405 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 22624404 22624450 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 22626818 22626870 trf 3 17.3 3 95 0 95 0 63 0 36 0.95 TCC chr1 22630309 22630366 trf 6 9.5 6 84 7 71 80 1 15 1 0.87 AAAAAG chr1 22631063 22631132 trf 12 5.8 12 89 0 75 44 1 52 1 1.19 AGGGAGAGAGAG chr1 22631070 22631132 trf 2 31.0 2 91 0 97 46 1 50 1 1.20 GA chr1 22631665 22631732 trf 2 33.5 2 86 0 80 49 43 4 2 1.38 AC chr1 22632344 22632401 trf 2 28.5 2 100 0 114 50 49 0 0 1.00 AC chr1 22632346 22632425 trf 10 7.9 10 92 0 50 50 40 8 0 1.34 ACACACAGAG chr1 22633245 22633373 trf 4 32.0 4 89 6 197 0 72 0 26 0.90 CCCT chr1 22633626 22633683 trf 5 11.8 5 81 10 57 0 0 17 82 0.67 TTTTG chr1 22635156 22635209 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 22636292 22636369 trf 4 19.5 4 97 2 147 24 25 0 49 1.51 TCTA chr1 22636428 22636524 trf 4 23.8 4 90 7 142 47 1 26 25 1.58 GATA chr1 22638262 22638334 trf 6 12.0 6 91 5 119 65 0 34 0 0.93 AGAAAG chr1 22638331 22638408 trf 4 19.0 4 91 2 127 51 0 48 0 1.00 AAGG chr1 22639670 22639725 trf 2 27.5 2 96 0 101 1 0 49 49 1.11 GT chr1 22645176 22645384 trf 12 17.3 12 74 9 102 39 1 54 3 1.27 GGAGAGAGAGAG chr1 22645177 22645252 trf 2 37.5 2 97 0 141 49 0 49 1 1.09 GA chr1 22645335 22645388 trf 4 13.5 4 84 4 63 32 0 67 0 0.91 AGGG chr1 22646277 22646340 trf 2 31.5 2 93 0 108 50 46 1 1 1.20 AC chr1 22647748 22647795 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 22656581 22656618 trf 2 18.5 2 94 0 65 51 45 0 2 1.15 AC chr1 22656954 22657019 trf 2 32.5 2 100 0 130 50 0 49 0 1.00 AG chr1 22657059 22657097 trf 2 19.0 2 94 0 67 52 0 47 0 1.00 GA chr1 22657492 22657589 trf 2 48.5 2 93 0 158 2 2 47 48 1.25 TG chr1 22660749 22660806 trf 3 19.0 3 100 0 114 33 0 0 66 0.92 TTA chr1 22668898 22668938 trf 1 40.0 1 100 0 80 100 0 0 0 0.00 A chr1 22669409 22669436 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 22670048 22670094 trf 11 4.2 11 83 10 58 47 2 0 50 1.13 TAATATATATA chr1 22670050 22670095 trf 2 24.0 2 78 13 51 46 2 0 51 1.13 AT chr1 22671148 22671253 trf 6 17.3 6 72 5 59 0 40 12 46 1.48 CTCTCT chr1 22671148 22671253 trf 4 26.0 4 75 5 59 0 40 12 46 1.48 CTCT chr1 22671153 22671213 trf 10 5.9 10 74 18 52 1 31 18 48 1.58 TCTCTGTCTG chr1 22671163 22671233 trf 6 10.8 6 78 14 61 1 34 15 48 1.54 TCTCTG chr1 22671256 22671309 trf 2 26.5 2 96 0 97 0 0 47 52 1.00 TG chr1 22672890 22672934 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 22675933 22675973 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 22681012 22681059 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 22682533 22682575 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 22690190 22690313 trf 6 21.2 6 65 12 51 49 0 47 3 1.17 AGAAGG chr1 22690205 22690331 trf 12 10.8 12 71 16 77 51 0 45 2 1.19 AGGAGAAGAAGA chr1 22690248 22690355 trf 11 8.9 12 71 22 57 50 0 47 0 1.13 GAAGAAGAGGAG chr1 22690318 22690384 trf 6 10.8 6 74 9 62 50 0 50 0 1.00 AAGAGG chr1 22690318 22690384 trf 9 7.6 9 81 6 82 50 0 50 0 1.00 AAGAGGAGG chr1 22690414 22690448 trf 9 3.8 9 96 0 59 41 0 58 0 0.98 GAGGAAGAG chr1 22700198 22700247 trf 3 16.3 3 100 0 98 67 0 0 32 0.91 ATA chr1 22701756 22701800 trf 2 22.0 2 95 0 79 47 2 0 50 1.13 AT chr1 22702216 22702333 trf 4 29.2 4 94 0 171 56 0 43 0 0.99 AGAG chr1 22702280 22702342 trf 4 14.0 4 78 18 61 66 0 33 0 0.92 AGAA chr1 22702758 22702802 trf 4 11.0 4 100 0 88 75 0 0 25 0.81 ATAA chr1 22704005 22704083 trf 4 19.5 4 90 5 59 38 0 61 0 0.96 AAGG chr1 22704817 22704914 trf 7 13.0 7 89 10 140 0 0 15 84 0.62 GTTTTTT chr1 22704818 22704915 trf 1 97.0 1 70 0 68 0 0 14 85 0.60 T chr1 22706230 22706269 trf 2 20.0 2 94 5 71 0 0 48 51 1.00 TG chr1 22711032 22711072 trf 12 3.3 12 85 0 53 25 37 0 37 1.56 CTATCCATCCAT chr1 22713660 22713885 trf 8 28.5 8 64 22 59 46 16 3 33 1.64 ATATATAC chr1 22716941 22716976 trf 4 8.8 4 87 0 52 48 25 22 2 1.64 AGAC chr1 22721986 22722053 trf 2 36.0 2 85 14 99 0 49 0 50 1.00 CT chr1 22737410 22737449 trf 6 6.5 6 93 0 69 48 0 17 33 1.48 ATAGAT chr1 22747920 22747983 trf 4 16.2 4 74 12 51 1 46 1 50 1.20 CTCT chr1 22748087 22748159 trf 2 37.5 2 91 8 123 0 48 0 51 1.00 TC chr1 22749193 22749228 trf 10 3.5 10 92 0 52 5 8 42 42 1.59 TGTGCATGTG chr1 22749891 22749937 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 22753453 22753530 trf 4 19.2 4 91 0 127 46 0 28 24 1.53 AGAT chr1 22754261 22754289 trf 12 2.3 12 100 0 56 42 0 14 42 1.45 ATATATATATGG chr1 22754531 22754569 trf 5 7.6 5 93 0 67 84 0 15 0 0.63 AAAAG chr1 22758129 22758155 trf 12 2.2 12 100 0 52 15 38 7 38 1.76 CCTTTACTGCAT chr1 22766787 22766829 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 22768149 22768238 trf 4 22.2 4 95 0 160 52 0 47 0 1.00 AAGG chr1 22776443 22776502 trf 2 29.5 2 91 0 91 1 49 0 49 1.11 TC chr1 22780348 22780386 trf 3 12.7 3 100 0 76 68 0 0 31 0.90 AAT chr1 22783094 22783462 trf 6 61.2 6 68 10 135 14 1 32 51 1.53 GTGTAT chr1 22783094 22783422 trf 4 82.0 4 72 2 120 13 1 33 51 1.51 GTGT chr1 22787586 22787631 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 22788117 22788202 trf 6 14.5 6 85 4 111 0 51 0 48 1.00 CTCTCT chr1 22788117 22788202 trf 4 21.8 4 86 4 111 0 51 0 48 1.00 CTCT chr1 22788180 22788278 trf 4 25.0 4 73 19 82 0 67 1 31 0.98 CCTC chr1 22790412 22790473 trf 2 31.5 2 90 6 99 49 1 0 49 1.10 TA chr1 22790558 22790590 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 AT chr1 22793246 22793283 trf 2 18.5 2 88 0 56 48 45 0 5 1.25 AC chr1 22796740 22796798 trf 2 30.0 2 93 6 102 0 50 0 50 1.00 TC chr1 22802339 22802373 trf 2 16.5 2 93 6 59 50 47 0 2 1.16 AC chr1 22803897 22803942 trf 8 4.9 10 83 10 53 0 0 15 84 0.62 TTTGGTTTTT chr1 22805831 22805870 trf 12 3.2 12 92 0 60 12 33 53 0 1.39 CGGCGGCGGCAG chr1 22805831 22805870 trf 6 6.5 6 84 0 51 12 33 53 0 1.39 CGGCAG chr1 22808017 22808142 trf 4 31.2 4 98 0 142 40 0 59 0 0.98 AGGA chr1 22810375 22810424 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 22810450 22810480 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 22810480 22810506 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 22813846 22813901 trf 2 27.5 2 96 0 101 50 49 0 0 1.00 CA chr1 22814299 22814361 trf 4 15.5 4 93 0 97 50 45 0 4 1.23 ACAC chr1 22814299 22814361 trf 6 10.3 6 94 0 97 50 45 0 4 1.23 ACACAC chr1 22814299 22814361 trf 10 6.2 10 96 0 97 50 45 0 4 1.23 ACACACACAC chr1 22814892 22814995 trf 2 55.0 2 76 12 94 45 0 0 53 1.06 AT chr1 22814898 22814995 trf 11 8.7 11 76 13 83 45 0 1 53 1.07 ATATATATTTA chr1 22816926 22816968 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 CT chr1 22822315 22822373 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 22823293 22823322 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 22823321 22823370 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 22826813 22826841 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 22827240 22827273 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 22827442 22827584 trf 8 18.4 8 77 12 73 61 0 37 0 1.01 AAGAAAGG chr1 22827452 22827486 trf 12 2.7 13 90 9 61 67 0 32 0 0.91 GGAAGAAAGAAAA chr1 22827517 22827572 trf 4 13.8 4 100 0 110 74 0 25 0 0.82 AAGA chr1 22829013 22829040 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 22838910 22838949 trf 3 13.0 3 100 0 78 66 0 33 0 0.92 AAG chr1 22838947 22839217 trf 3 88.3 3 88 5 398 37 0 61 0 0.99 AGG chr1 22843615 22843664 trf 2 24.5 2 95 0 89 0 0 46 53 1.00 TG chr1 22845957 22846001 trf 2 22.0 2 95 0 79 2 0 47 50 1.13 GT chr1 22847014 22847045 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 22853296 22853334 trf 2 19.5 2 89 5 60 47 50 0 2 1.15 AC chr1 22853341 22853381 trf 10 3.9 10 84 15 55 50 22 0 27 1.50 ACATACATAT chr1 22853348 22853387 trf 4 10.2 4 89 10 64 51 23 0 25 1.49 ATAC chr1 22853459 22853490 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 22875332 22875359 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 22875828 22875859 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 22876837 22876895 trf 5 12.0 5 92 3 84 0 0 20 79 0.74 TTTTG chr1 22881548 22881589 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 22883305 22883343 trf 12 3.2 12 88 3 51 44 0 55 0 0.99 GAGAGAGAAAGG chr1 22883345 22883523 trf 4 44.8 4 85 8 213 46 0 53 0 1.04 AAGG chr1 22884544 22884771 trf 2 114.5 2 89 1 332 46 49 1 2 1.24 CA chr1 22887731 22887823 trf 4 23.0 4 95 0 166 72 0 27 0 0.84 AAAG chr1 22887825 22887875 trf 4 12.5 4 100 0 100 50 0 50 0 1.00 AGGA chr1 22894317 22894443 trf 2 64.5 2 82 4 141 43 4 3 48 1.40 TA chr1 22895906 22896028 trf 5 25.4 5 94 4 200 0 59 0 40 0.97 CTCTC chr1 22897089 22897247 trf 4 40.2 4 96 3 295 0 24 0 75 0.81 TTTC chr1 22897767 22897803 trf 4 9.0 4 100 0 72 0 25 25 50 1.50 TCTG chr1 22897800 22897830 trf 4 7.5 4 100 0 60 0 50 23 26 1.50 CTGC chr1 22897828 22897880 trf 4 13.0 4 100 0 104 25 25 0 50 1.50 CTAT chr1 22898606 22898663 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 22911514 22911565 trf 2 25.5 2 100 0 102 0 0 50 49 1.00 GT chr1 22924957 22924993 trf 10 3.6 10 88 0 54 38 0 11 50 1.38 ATATATGTGT chr1 22924966 22925001 trf 2 17.5 2 87 0 52 42 0 5 51 1.25 TA chr1 22925315 22925350 trf 4 8.8 4 87 0 52 28 22 0 48 1.51 ATTC chr1 22927194 22927230 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 22927683 22927723 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 AG chr1 22930259 22930295 trf 12 3.2 12 92 7 58 86 13 0 0 0.58 AAAACAAAACAA chr1 22930648 22930693 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 22936082 22936116 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 22936704 22936734 trf 4 7.5 4 100 0 60 73 0 0 26 0.84 ATAA chr1 22938391 22938423 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 22941410 22941601 trf 2 95.5 2 72 4 116 7 5 40 46 1.56 TG chr1 22943634 22943670 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 22948104 22948148 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 22948373 22948411 trf 11 3.3 11 86 13 58 15 21 7 55 1.66 TTCTCTTTAAG chr1 22953986 22954014 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 22955150 22955179 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 ACAA chr1 22959829 22959869 trf 2 20.5 2 94 5 73 52 0 47 0 1.00 AG chr1 22961427 22961472 trf 5 9.0 5 100 0 90 80 0 0 20 0.72 AAAAT chr1 22964887 22964948 trf 4 14.8 4 79 8 52 77 19 3 0 0.91 AAAC chr1 22965597 22965628 trf 2 15.5 2 93 0 53 48 48 3 0 1.17 CA chr1 22968417 22968480 trf 2 31.5 2 96 0 117 1 0 50 47 1.10 GT chr1 22971727 22971768 trf 12 3.4 12 81 18 50 2 58 0 39 1.11 CCTCTCCTCTCT chr1 22973629 22973676 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 22979419 22979494 trf 5 13.4 5 76 20 69 26 0 73 0 0.84 AGGGG chr1 22979423 22979497 trf 12 6.3 12 90 3 116 27 0 72 0 0.84 GAGGGGAGGGGA chr1 22979423 22979497 trf 6 11.6 7 71 23 65 27 0 72 0 0.84 GAGGGGA chr1 22984470 22984517 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 22986724 22986785 trf 4 15.0 4 98 1 113 50 0 49 0 1.00 AAGG chr1 23003085 23003176 trf 2 45.5 2 95 0 164 50 0 49 0 1.00 AG chr1 23004539 23004571 trf 3 10.7 3 100 0 64 0 0 65 34 0.93 TGG chr1 23004571 23004648 trf 3 25.7 3 94 0 136 32 31 0 36 1.58 CTA chr1 23012914 23012963 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 23012989 23013086 trf 4 24.2 4 93 0 113 43 0 56 0 0.99 AGAG chr1 23013813 23013889 trf 12 6.4 12 85 8 84 6 0 44 48 1.28 TGTGTGTGTGTA chr1 23013836 23013889 trf 2 26.5 2 92 0 88 3 0 47 49 1.19 TG chr1 23014630 23014668 trf 10 3.8 10 92 0 58 31 0 0 68 0.90 AATTTTATTT chr1 23014770 23014850 trf 4 20.0 4 92 0 133 1 51 0 47 1.08 TCCT chr1 23014847 23014929 trf 6 13.7 6 97 0 155 0 65 0 34 0.93 CCTCTC chr1 23016906 23016951 trf 6 7.2 6 90 9 72 82 17 0 0 0.68 AAAAAC chr1 23019419 23019453 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 23021498 23021544 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 23023204 23023237 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 23023320 23023385 trf 2 32.0 2 90 3 94 3 3 44 49 1.33 TG chr1 23023418 23023443 trf 10 2.5 10 100 0 50 16 8 32 44 1.76 TGTGTATGCA chr1 23023621 23023664 trf 2 22.0 2 80 4 52 51 44 0 4 1.22 AC chr1 23026643 23026687 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 23027857 23027930 trf 3 25.3 3 79 5 62 0 65 4 30 1.11 TCC chr1 23028258 23028296 trf 2 19.5 2 94 5 69 0 0 52 47 1.00 GT chr1 23030827 23030927 trf 6 16.7 6 88 0 110 50 10 40 0 1.36 AGAGAG chr1 23030827 23030927 trf 4 25.0 4 85 0 110 50 10 40 0 1.36 AGAG chr1 23032163 23032227 trf 2 32.5 2 95 3 112 46 0 53 0 1.00 GA chr1 23032609 23032635 trf 12 2.2 12 100 0 52 34 15 7 42 1.75 TACTCTAATATG chr1 23036360 23036405 trf 4 12.0 4 81 13 60 80 20 0 0 0.72 CAAA chr1 23037599 23037624 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 23039456 23039490 trf 1 34.0 1 100 0 68 100 0 0 0 0.00 A chr1 23039749 23039803 trf 2 27.0 2 96 0 99 1 0 48 50 1.11 TG chr1 23040536 23040596 trf 6 9.7 6 89 5 57 38 1 11 48 1.50 ATATGT chr1 23040567 23040600 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 23040599 23040642 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 23040680 23040729 trf 4 12.2 4 77 0 53 30 4 18 46 1.67 TGTA chr1 23043690 23043737 trf 8 5.6 8 87 7 58 82 17 0 0 0.66 AAAAAAAC chr1 23043694 23043735 trf 4 9.8 4 91 2 55 80 19 0 0 0.71 AAAC chr1 23044431 23044491 trf 4 15.2 4 89 3 95 50 28 0 21 1.49 ATAC chr1 23046973 23047005 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 23049643 23049675 trf 12 2.7 12 95 0 55 40 6 53 0 1.26 GGCAGAGAGAAG chr1 23051248 23051377 trf 5 25.8 5 98 0 168 0 67 0 32 0.91 TTCCC chr1 23065362 23065389 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 23067618 23067646 trf 5 5.6 5 100 0 56 82 17 0 0 0.68 AAAAC chr1 23070631 23070668 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 23073086 23073132 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 23073413 23073463 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 23075010 23075043 trf 5 6.6 5 92 0 57 78 0 3 18 0.87 AAATA chr1 23078993 23079028 trf 8 4.4 8 96 0 52 31 25 31 11 1.91 CAGGATCA chr1 23080524 23080550 trf 4 6.5 4 100 0 52 76 0 0 23 0.78 AAAT chr1 23081007 23081051 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 23081559 23081605 trf 3 15.3 3 100 0 92 67 0 32 0 0.91 AAG chr1 23081603 23081676 trf 3 24.7 3 84 2 94 41 0 58 0 0.98 GAG chr1 23085227 23085284 trf 2 28.5 2 100 0 114 0 50 0 49 1.00 CT chr1 23085883 23085919 trf 7 5.0 7 96 3 63 0 0 16 83 0.65 TTTTTTG chr1 23086732 23086775 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 23088558 23088632 trf 3 24.7 3 100 0 148 0 33 0 66 0.92 CTT chr1 23088648 23088700 trf 3 17.3 3 91 0 68 0 57 0 42 0.98 TCC chr1 23095576 23095610 trf 8 4.6 7 89 10 50 82 17 0 0 0.67 ACAAAAA chr1 23097810 23097847 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 23099115 23099191 trf 2 38.0 2 97 0 143 51 0 48 0 1.00 GA chr1 23104437 23104547 trf 2 56.0 2 89 3 170 46 0 53 0 1.00 GA chr1 23107284 23107320 trf 8 4.5 8 100 0 72 0 38 22 38 1.54 CTCTTGCG chr1 23117248 23117282 trf 4 8.5 4 93 0 59 26 2 23 47 1.66 ATGT chr1 23119354 23119395 trf 4 10.2 4 100 0 82 48 0 24 26 1.51 TAGA chr1 23121874 23121904 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 23121903 23121968 trf 8 8.1 8 82 0 58 52 10 36 0 1.37 AGAGAGAG chr1 23121903 23121968 trf 6 10.8 6 88 0 58 52 10 36 0 1.37 AGAGAG chr1 23122480 23122509 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 23123344 23123406 trf 4 15.5 4 100 0 124 0 24 24 51 1.48 TTGC chr1 23123716 23123791 trf 2 39.0 2 86 7 111 1 53 0 45 1.08 TC chr1 23123716 23123837 trf 6 20.5 6 79 13 56 2 56 0 41 1.13 TCTCCC chr1 23129708 23129768 trf 2 30.0 2 93 0 102 1 1 48 48 1.21 GT chr1 23129963 23129991 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 23130202 23130274 trf 5 13.8 5 80 13 83 76 20 2 0 0.91 CAAAA chr1 23137727 23137788 trf 5 11.8 5 93 6 104 60 21 0 18 1.36 AACAT chr1 23140802 23140869 trf 3 22.3 3 100 0 134 34 0 65 0 0.93 AGG chr1 23140867 23140942 trf 3 25.0 3 100 0 150 66 0 33 0 0.92 GAA chr1 23142224 23142258 trf 10 3.4 10 91 0 50 0 0 29 70 0.87 GTTTTGTTTG chr1 23142828 23142877 trf 5 10.6 5 82 12 61 0 0 20 79 0.73 TTGTT chr1 23144344 23144401 trf 5 11.4 5 100 0 114 0 0 19 80 0.71 TTGTT chr1 23145780 23145826 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 23147566 23147708 trf 3 47.0 3 82 4 160 40 0 59 0 0.98 GAG chr1 23150661 23150711 trf 5 10.0 5 97 0 91 62 0 38 0 0.96 AAGAG chr1 23150709 23150815 trf 5 21.2 5 100 0 212 60 0 39 0 0.97 AGGAA chr1 23151471 23151667 trf 4 50.0 4 85 9 262 48 0 25 26 1.51 GATA chr1 23156641 23156693 trf 4 13.0 4 100 0 104 75 0 0 25 0.81 TAAA chr1 23158372 23158398 trf 4 6.5 4 100 0 52 46 0 0 53 1.00 TTAA chr1 23166051 23166155 trf 2 52.5 2 98 1 201 50 0 50 0 1.00 AG chr1 23167568 23167608 trf 8 5.0 8 84 0 53 15 22 32 30 1.94 ATCCTGGG chr1 23170319 23170372 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 23175924 23176531 trf 2 316.5 2 68 8 195 8 1 33 56 1.38 TG chr1 23176795 23176834 trf 7 5.7 7 85 14 55 84 15 0 0 0.62 AAAACAA chr1 23178994 23179026 trf 9 3.6 9 100 0 64 34 25 0 40 1.56 AATCCTTTA chr1 23181958 23181983 trf 12 2.1 12 100 0 50 8 0 76 16 1.02 GTGGGTGGGGGA chr1 23182278 23182313 trf 4 8.8 4 87 0 52 0 5 22 71 1.07 TTTG chr1 23190669 23190716 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 23194845 23194951 trf 4 26.5 4 98 0 158 44 0 55 0 0.99 AGGA chr1 23195436 23195763 trf 4 87.0 4 69 15 110 44 3 24 27 1.72 AGAT chr1 23195599 23195771 trf 11 15.7 11 68 20 60 42 1 26 29 1.65 GATAGATAGAT chr1 23196168 23196230 trf 2 31.0 2 100 0 124 50 0 50 0 1.00 GA chr1 23197081 23197109 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 23199413 23199443 trf 4 7.2 4 92 7 51 73 0 0 26 0.84 TAAA chr1 23199895 23199938 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 23200432 23200457 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TTGT chr1 23202171 23202241 trf 4 17.5 4 90 0 104 44 54 1 0 1.09 CACA chr1 23202171 23202241 trf 6 11.7 6 92 0 104 44 54 1 0 1.09 CACACA chr1 23202171 23202241 trf 10 7.0 10 91 0 104 44 54 1 0 1.09 CACACACACA chr1 23206913 23206939 trf 12 2.2 12 100 0 52 7 30 7 53 1.57 TTTTCTCCCTAG chr1 23209233 23209261 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 23209538 23209592 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 23214432 23214495 trf 2 31.5 2 100 0 126 49 50 0 0 1.00 CA chr1 23220491 23220604 trf 5 24.0 5 95 3 152 85 14 0 0 0.59 CAAAA chr1 23220492 23220607 trf 1 115.0 1 75 0 95 86 13 0 0 0.56 A chr1 23221377 23221493 trf 4 29.2 4 87 8 148 45 0 52 0 1.12 GGAA chr1 23227132 23227260 trf 6 21.3 6 99 0 211 37 0 62 0 0.95 AGGGAG chr1 23228202 23228338 trf 4 34.0 4 98 0 209 69 0 30 0 0.88 AAGA chr1 23228460 23228512 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 23235953 23236006 trf 3 18.0 3 94 3 90 69 0 0 30 0.88 AAT chr1 23240601 23240653 trf 5 10.6 5 85 10 72 1 1 17 78 0.93 TTTGT chr1 23243366 23243410 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 23243409 23243457 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 23243911 23243956 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 23249811 23249853 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 23250285 23250336 trf 4 12.8 4 82 14 61 0 23 0 76 0.79 TTTC chr1 23250333 23250362 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 23251168 23251205 trf 4 9.2 4 100 0 74 72 0 0 27 0.84 TAAA chr1 23254640 23254671 trf 2 15.5 2 93 0 53 0 48 0 51 1.00 CT chr1 23256486 23256578 trf 2 46.0 2 86 0 103 43 46 6 3 1.45 CA chr1 23261449 23261484 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 23261682 23261725 trf 2 21.5 2 95 0 77 2 0 46 51 1.13 TG chr1 23264763 23264812 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 23264823 23264856 trf 8 4.1 8 92 0 57 39 0 60 0 0.97 GGAGGAAG chr1 23278976 23279011 trf 12 2.9 12 86 0 52 42 5 25 25 1.77 TACAGAATTAGG chr1 23284661 23284695 trf 11 3.1 11 88 12 52 2 0 41 55 1.15 TGTGTGTGTGT chr1 23287663 23287688 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 23289847 23289876 trf 3 9.7 3 100 0 58 31 0 0 68 0.89 TTA chr1 23314025 23314114 trf 4 22.2 4 97 0 169 0 25 0 74 0.82 TCTT chr1 23322348 23322373 trf 8 3.1 8 100 0 50 36 12 12 40 1.79 TATATGCA chr1 23323177 23323218 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 23324541 23324635 trf 5 18.8 5 100 0 188 80 0 0 19 0.70 AAAAT chr1 23326346 23326383 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 23331308 23331336 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 23340775 23340815 trf 4 10.0 4 100 0 80 75 0 0 25 0.81 AAAT chr1 23344571 23344602 trf 12 2.6 12 94 0 53 51 38 6 3 1.44 ACACACACAGAC chr1 23347823 23347856 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 23349436 23349501 trf 8 7.6 8 83 13 85 86 13 0 0 0.58 AAAAACAA chr1 23351436 23351550 trf 2 60.0 2 84 10 159 0 47 0 51 1.06 TC chr1 23352649 23352714 trf 4 16.2 4 93 0 67 64 1 33 0 1.03 AAAG chr1 23352675 23352702 trf 2 13.5 2 100 0 54 51 0 48 0 1.00 AG chr1 23359256 23359315 trf 2 29.5 2 89 0 91 1 47 1 49 1.21 CT chr1 23359314 23359384 trf 2 35.0 2 91 0 113 48 47 0 4 1.21 CA chr1 23361459 23361490 trf 2 15.5 2 93 0 53 0 45 0 54 0.99 TC chr1 23361489 23361517 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 23363416 23363571 trf 4 38.5 4 96 1 139 0 36 0 63 0.94 TTTC chr1 23365574 23365626 trf 4 13.0 4 100 0 104 75 0 0 25 0.81 AAAT chr1 23369699 23369742 trf 1 43.0 1 100 0 86 0 0 0 100 0.00 T chr1 23377619 23377666 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 23378844 23378888 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 23383249 23383283 trf 5 6.6 5 86 6 50 0 76 20 2 0.92 CCCGC chr1 23398296 23398325 trf 11 2.7 11 94 5 51 6 0 55 37 1.27 TGGTGGTGGTA chr1 23398322 23398365 trf 2 21.5 2 95 0 77 2 0 48 48 1.14 GT chr1 23401824 23401874 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 23402375 23402416 trf 4 10.5 4 94 5 75 75 0 0 24 0.80 AATA chr1 23410642 23410953 trf 2 156.0 2 73 0 129 54 34 1 9 1.42 AC chr1 23413269 23413329 trf 4 15.0 4 96 0 111 51 0 25 23 1.48 ATAG chr1 23414726 23414793 trf 2 33.0 2 90 3 107 50 46 1 1 1.19 CA chr1 23416949 23416994 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 23417080 23417119 trf 6 6.3 6 91 5 60 0 0 20 79 0.73 TTTTTG chr1 23422416 23422468 trf 3 17.3 3 91 0 86 32 1 1 63 1.16 ATT chr1 23424363 23424399 trf 2 18.0 2 94 0 63 0 52 0 47 1.00 TC chr1 23426014 23426050 trf 12 3.0 12 91 0 54 8 2 72 16 1.21 GTGGGTGGGGGA chr1 23427267 23427448 trf 4 44.0 4 72 20 65 0 58 0 40 1.02 TCCT chr1 23427299 23427427 trf 5 26.2 5 81 9 104 0 60 0 38 1.02 CCTTC chr1 23427457 23427528 trf 4 17.8 4 88 5 108 0 26 0 73 0.84 CTTT chr1 23428090 23428244 trf 6 26.5 6 81 13 162 44 0 55 0 0.99 GAGAAG chr1 23428211 23428245 trf 3 11.0 3 87 6 50 35 0 64 0 0.94 AGG chr1 23429841 23429888 trf 4 11.8 4 90 0 58 65 0 8 25 1.20 TAAA chr1 23431819 23431845 trf 5 5.2 5 100 0 52 0 57 0 42 0.98 TCCTC chr1 23431886 23432099 trf 4 52.0 4 85 6 176 0 36 0 63 0.95 CTTT chr1 23434771 23434813 trf 8 5.0 8 83 11 57 0 38 11 50 1.40 CTTGCTCT chr1 23434882 23434920 trf 2 19.5 2 94 5 69 0 50 0 50 1.00 CT chr1 23442235 23442270 trf 2 17.5 2 93 0 61 48 0 2 48 1.16 AT chr1 23442269 23442330 trf 2 30.5 2 96 0 113 49 49 0 1 1.10 AC chr1 23448251 23448476 trf 8 27.4 8 94 1 189 0 41 0 58 0.98 TTTCTTCC chr1 23448254 23448475 trf 12 17.9 12 91 2 226 0 42 0 57 0.98 CTTCCTTTCTTC chr1 23448254 23448435 trf 4 43.8 4 97 1 272 0 45 0 54 1.00 CTTC chr1 23448432 23448476 trf 4 11.0 4 100 0 88 0 25 0 75 0.81 CTTT chr1 23448583 23448626 trf 12 3.6 12 81 12 52 2 25 2 69 1.12 TCTTTCTCTTTA chr1 23450310 23450347 trf 12 3.1 12 92 0 56 64 8 0 27 1.21 ATAACAATAATA chr1 23451860 23451907 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 23457642 23457673 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 23459325 23459432 trf 2 59.5 2 69 20 76 48 0 0 50 1.07 TA chr1 23459465 23459515 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 23459798 23459825 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 23461109 23461151 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 23461261 23461306 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 23477843 23477906 trf 2 31.5 2 96 0 117 49 49 0 1 1.10 CA chr1 23481793 23481833 trf 3 13.3 3 100 0 80 32 0 0 67 0.91 TAT chr1 23484179 23484221 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 23485286 23485334 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 23486428 23486657 trf 4 58.2 4 82 7 247 46 3 24 25 1.69 GATA chr1 23488714 23488764 trf 2 25.0 2 95 0 91 0 0 48 52 1.00 GT chr1 23491592 23491654 trf 2 31.0 2 100 0 124 0 50 0 50 1.00 TC chr1 23491674 23491733 trf 2 29.5 2 92 0 100 54 0 45 0 0.99 AG chr1 23494364 23494415 trf 4 12.8 4 100 0 102 50 0 23 25 1.49 ATAG chr1 23494445 23494482 trf 12 3.1 12 92 0 65 40 8 35 16 1.78 ATGGACATAGAG chr1 23496034 23496384 trf 10 34.1 10 87 7 204 0 48 0 51 1.00 TCTTCTCTTC chr1 23496135 23496378 trf 5 47.6 5 85 7 319 0 53 0 46 1.00 TTCCC chr1 23506604 23506811 trf 8 25.9 8 76 7 179 1 32 15 50 1.54 TCTCTCTG chr1 23508615 23508689 trf 5 14.6 5 88 2 112 0 24 0 75 0.80 TTTCT chr1 23508702 23508749 trf 4 11.8 4 100 0 94 23 0 0 76 0.78 TTTA chr1 23512720 23512812 trf 8 12.3 7 92 6 89 47 0 50 2 1.13 GAGAGAG chr1 23512720 23512796 trf 2 38.5 2 97 2 145 48 0 51 0 1.00 GA chr1 23518414 23518441 trf 7 3.9 7 100 0 54 40 14 44 0 1.46 GCAGGAA chr1 23519407 23519626 trf 8 26.5 8 67 13 68 43 30 8 17 1.79 CACACATG chr1 23522605 23522654 trf 1 49.0 1 83 0 62 0 0 8 91 0.41 T chr1 23525436 23525463 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 23530684 23530902 trf 4 54.2 4 80 6 208 65 0 34 0 0.93 AAAG chr1 23530729 23530922 trf 8 23.2 8 89 7 226 63 0 36 0 0.95 GAAAGAGA chr1 23530732 23530923 trf 4 50.0 4 77 9 94 62 0 37 0 0.95 AGAG chr1 23530920 23530976 trf 4 14.0 4 100 0 112 25 0 75 0 0.81 GAGG chr1 23530973 23531040 trf 4 17.0 4 90 3 109 49 1 49 0 1.10 AGGA chr1 23533202 23534281 trf 4 267.8 4 77 10 1004 47 0 21 29 1.57 ATAG chr1 23533285 23533504 trf 6 35.2 6 65 21 53 48 0 19 31 1.55 ATAGAT chr1 23537515 23537544 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 23540879 23540907 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 23542084 23542153 trf 7 9.4 7 86 10 86 0 1 15 82 0.74 TTTGTTT chr1 23542084 23542150 trf 4 17.8 4 79 14 79 0 1 16 81 0.76 TTTG chr1 23542104 23542172 trf 1 68.0 1 73 0 55 1 0 11 86 0.63 T chr1 23547865 23547912 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 23551208 23551251 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 23554861 23554945 trf 2 42.0 2 85 0 114 2 2 45 50 1.27 GT chr1 23558119 23558170 trf 4 12.8 4 91 0 84 72 3 0 23 1.01 ATAA chr1 23559448 23559491 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 23560286 23560322 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 23568993 23569046 trf 2 26.5 2 96 0 97 0 1 47 50 1.12 TG chr1 23570674 23570728 trf 8 6.5 8 83 12 56 83 14 1 0 0.73 AAAACAAA chr1 23570682 23570723 trf 4 9.8 4 91 2 55 80 19 0 0 0.71 AAAC chr1 23573122 23573212 trf 8 11.4 8 85 7 76 62 0 37 0 0.96 AAAGGAAG chr1 23573122 23573212 trf 4 22.8 4 93 2 65 62 0 37 0 0.96 AAAG chr1 23573123 23573212 trf 12 7.5 12 84 2 90 61 0 38 0 0.96 AAGAAAGGAAGG chr1 23575520 23575639 trf 6 19.3 6 91 5 193 32 17 0 49 1.47 TATATC chr1 23576817 23576938 trf 6 20.5 6 87 3 84 30 0 19 50 1.48 TATGTA chr1 23576877 23576939 trf 2 31.0 2 90 0 79 41 0 8 50 1.32 TA chr1 23582925 23582969 trf 5 8.4 5 90 9 70 0 2 18 79 0.83 TTGTT chr1 23587625 23587684 trf 8 7.4 8 96 0 100 25 8 66 0 1.20 AGGGACGG chr1 23587706 23587738 trf 4 8.0 4 100 0 64 25 0 0 75 0.81 TTAT chr1 23587956 23587991 trf 6 5.8 6 89 0 52 0 8 40 51 1.33 TGTGTC chr1 23587956 23588000 trf 12 3.5 12 88 11 70 0 9 40 50 1.34 TGTGTGTGTGTC chr1 23587960 23588000 trf 8 4.8 8 82 11 53 0 10 40 50 1.36 TGTGTGTC chr1 23592169 23592207 trf 6 6.3 6 100 0 76 50 15 0 34 1.45 ATATAC chr1 23592222 23592249 trf 4 6.8 4 100 0 54 51 0 22 25 1.48 ATAG chr1 23596937 23596972 trf 12 2.9 12 82 0 52 85 14 0 0 0.59 ACAAAAAAAAAA chr1 23598817 23598867 trf 2 26.0 2 88 8 77 0 50 0 50 1.00 TC chr1 23600358 23600423 trf 4 16.2 4 90 6 105 47 0 27 24 1.52 GATA chr1 23601127 23601223 trf 2 48.0 2 89 0 138 46 46 3 3 1.34 AC chr1 23609340 23609388 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 23610916 23610960 trf 3 14.7 3 100 0 88 65 0 0 34 0.93 ATA chr1 23611632 23611672 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 TA chr1 23612372 23612555 trf 10 16.0 12 80 12 96 0 54 1 44 1.07 CTCTCCTCTCTC chr1 23612372 23612483 trf 5 21.8 5 89 9 147 0 61 0 38 0.96 CTCTC chr1 23612377 23612482 trf 3 38.3 3 77 21 115 0 61 0 38 0.96 CCT chr1 23612508 23612555 trf 6 7.8 6 100 0 94 0 51 0 48 1.00 CTCTCT chr1 23612508 23612555 trf 4 11.8 4 100 0 94 0 51 0 48 1.00 CTCT chr1 23612554 23612586 trf 2 16.0 2 93 0 55 53 46 0 0 1.00 CA chr1 23630081 23630108 trf 4 6.8 4 100 0 54 25 0 74 0 0.83 GAGG chr1 23630105 23630151 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 23638077 23638120 trf 5 8.6 5 100 0 86 81 0 0 18 0.69 AAAAT chr1 23639915 23639962 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 23640613 23640829 trf 9 24.4 9 86 7 165 44 1 53 0 1.11 GGAAGAGGA chr1 23640614 23640670 trf 3 18.3 3 96 3 103 64 0 35 0 0.94 GAA chr1 23640668 23640828 trf 9 17.8 9 94 0 230 37 2 60 0 1.11 AGGAGGAGG chr1 23640668 23640828 trf 6 26.7 6 88 0 230 37 2 60 0 1.11 AGGAGG chr1 23644935 23644970 trf 4 8.8 4 100 0 70 74 0 0 25 0.82 TAAA chr1 23652959 23653013 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 CT chr1 23654422 23654999 trf 10 57.1 10 65 19 105 41 40 2 15 1.58 CACACATACA chr1 23654523 23654668 trf 2 74.0 2 69 6 73 40 46 2 10 1.52 CA chr1 23654874 23654942 trf 2 34.5 2 74 14 52 47 44 0 8 1.34 AC chr1 23662784 23662847 trf 2 31.5 2 96 0 117 50 1 47 0 1.10 AG chr1 23672117 23672183 trf 2 33.5 2 93 3 116 48 1 0 50 1.10 TA chr1 23677933 23677971 trf 6 6.2 6 93 6 67 15 84 0 0 0.63 CCCACC chr1 23680470 23680521 trf 2 25.5 2 100 0 102 0 50 0 49 1.00 CT chr1 23680520 23680572 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 23681137 23681168 trf 3 10.7 3 93 6 55 64 0 35 0 0.94 GAA chr1 23681166 23681193 trf 3 9.0 3 100 0 54 33 0 66 0 0.92 GAG chr1 23682551 23682597 trf 4 12.0 4 84 9 60 76 0 23 0 0.79 AAGA chr1 23682594 23682622 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 23682619 23682651 trf 4 8.0 4 100 0 64 25 0 75 0 0.81 GAGG chr1 23682648 23682690 trf 4 10.5 4 100 0 84 50 0 50 0 1.00 AGGA chr1 23682687 23682746 trf 4 14.8 4 100 0 118 74 0 25 0 0.82 AAGA chr1 23684285 23684326 trf 4 10.2 4 94 0 73 51 21 0 26 1.48 ATAC chr1 23688640 23688912 trf 4 71.8 4 69 15 168 43 2 26 27 1.68 TAGA chr1 23688695 23688912 trf 11 19.5 11 74 13 126 42 3 27 26 1.70 GATAGATGATA chr1 23697906 23697934 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 23706963 23707013 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 23710069 23710316 trf 4 63.0 4 90 4 396 49 2 22 25 1.62 GATA chr1 23710076 23710369 trf 12 25.1 12 91 5 332 49 6 18 25 1.71 GATAGATACATA chr1 23710313 23710368 trf 4 13.8 4 100 0 110 50 23 0 25 1.49 ATAC chr1 23712323 23712467 trf 4 36.8 4 90 4 204 47 2 27 22 1.65 AGAT chr1 23713982 23714024 trf 2 21.0 2 95 0 75 52 0 47 0 1.00 AG chr1 23714021 23714049 trf 4 7.0 4 100 0 56 25 0 75 0 0.81 GAGG chr1 23714046 23714155 trf 8 13.6 8 99 0 164 56 0 43 0 0.99 AGGAAGAA chr1 23715517 23715558 trf 4 10.2 4 94 0 73 26 0 73 0 0.84 GAGG chr1 23718458 23718486 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 23721471 23722092 trf 10 60.6 10 64 20 164 39 41 0 18 1.54 ACTCACACAC chr1 23721476 23722086 trf 8 73.9 8 65 15 156 39 41 0 18 1.54 CACACACT chr1 23723704 23723738 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 23724102 23724151 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 23730662 23730697 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 23731791 23731846 trf 4 13.8 4 96 0 101 72 0 1 25 0.94 ATAA chr1 23734254 23734363 trf 5 21.8 5 99 0 146 67 0 32 0 0.91 AAAGG chr1 23743599 23743655 trf 12 4.5 12 82 8 67 5 66 0 28 1.14 TCTCCCTCCCCA chr1 23743723 23743775 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 23746728 23747063 trf 12 26.6 12 66 22 84 47 33 1 17 1.58 ACACACATACAT chr1 23746852 23747022 trf 10 16.5 10 70 13 96 50 33 0 15 1.49 ACACACATAC chr1 23746854 23746915 trf 6 10.5 6 73 7 54 52 34 0 13 1.40 ACACAT chr1 23748228 23748301 trf 5 14.6 5 92 0 110 58 19 4 17 1.54 AAACT chr1 23749364 23749407 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 23749410 23749513 trf 2 52.0 2 95 1 181 47 0 0 51 1.07 TA chr1 23751660 23751703 trf 2 22.0 2 95 4 79 48 51 0 0 1.00 AC chr1 23752020 23752073 trf 2 27.5 2 79 7 56 45 3 3 47 1.39 TA chr1 23758819 23758849 trf 10 3.0 10 100 0 60 50 10 10 30 1.69 ATAACAATGT chr1 23761722 23761765 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 23764062 23764108 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 23764105 23764161 trf 12 4.6 12 80 8 60 0 64 0 35 0.94 CTCCCTCCCTTC chr1 23766595 23766674 trf 3 26.0 3 97 2 149 34 0 65 0 0.93 GAG chr1 23766667 23766749 trf 3 27.3 3 97 0 155 64 0 35 0 0.94 GAA chr1 23768134 23768203 trf 2 34.5 2 94 0 120 49 1 1 47 1.19 AT chr1 23768202 23768228 trf 2 13.0 2 100 0 52 50 0 50 0 1.00 AG chr1 23770546 23770609 trf 2 32.5 2 88 6 76 42 0 57 0 0.99 AG chr1 23772046 23772083 trf 4 9.5 4 88 5 58 48 21 0 29 1.50 ATAC chr1 23773625 23773841 trf 4 54.8 4 86 8 255 0 27 2 69 1.02 CTTT chr1 23773857 23773922 trf 2 33.0 2 96 3 123 0 50 0 49 1.00 TC chr1 23778375 23778418 trf 3 14.3 3 95 0 77 2 0 62 34 1.08 TGG chr1 23781167 23781193 trf 6 4.3 6 100 0 52 0 0 15 84 0.62 TTGTTT chr1 23788419 23788450 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 23789702 23789735 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 23791578 23791634 trf 2 28.0 2 85 0 76 42 0 7 50 1.30 TA chr1 23795856 23796159 trf 2 166.0 2 75 18 306 0 54 0 45 1.02 TC chr1 23799469 23799507 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 23799549 23799588 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 23799587 23799639 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 23799931 23799980 trf 6 8.2 6 84 8 64 2 0 16 81 0.78 TTGTTT chr1 23801184 23801222 trf 3 12.7 3 100 0 76 0 0 31 68 0.90 TTG chr1 23804557 23804590 trf 12 2.5 13 85 14 50 0 0 42 57 0.98 TTGGTTTGGTTGG chr1 23806945 23806990 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 23806989 23807036 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 23807518 23807657 trf 6 23.2 6 98 0 197 43 0 56 0 0.99 AGAGAG chr1 23808918 23809009 trf 4 23.0 4 89 2 139 49 0 26 24 1.50 TAGA chr1 23809039 23809066 trf 4 6.8 4 100 0 54 25 0 22 51 1.48 TATG chr1 23812692 23812734 trf 3 14.0 3 100 0 84 33 0 0 66 0.92 ATT chr1 23813887 23813920 trf 6 5.3 6 92 7 57 0 0 30 69 0.88 TTGGTT chr1 23814795 23814893 trf 4 24.5 4 89 0 124 0 28 1 70 0.94 TTTC chr1 23818258 23818283 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 23821026 23821120 trf 4 25.5 4 85 12 123 47 0 26 25 1.52 TGAA chr1 23823305 23823347 trf 6 7.0 6 81 10 50 0 71 0 28 0.86 TCTCCC chr1 23823305 23823347 trf 12 3.5 12 83 0 57 0 71 0 28 0.86 TCTCCCTCCCCC chr1 23823310 23823352 trf 8 5.2 8 78 21 52 0 71 0 28 0.86 CTCCCCCT chr1 23828736 23828811 trf 2 37.5 2 97 0 141 50 48 0 1 1.09 AC chr1 23828843 23828868 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 23834799 23834826 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 23836000 23836038 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 23838351 23838432 trf 7 11.6 7 83 15 89 0 29 0 70 0.88 TCTTTCT chr1 23838354 23838450 trf 10 10.4 10 81 16 111 0 31 0 68 0.90 TTCTTCTTTC chr1 23838354 23838456 trf 3 31.3 3 83 13 98 0 32 0 67 0.91 TTC chr1 23838448 23838497 trf 3 16.0 3 87 4 71 0 61 0 38 0.96 CTC chr1 23838453 23838522 trf 12 5.3 14 86 13 87 0 57 0 42 0.98 TCTCCTCCTCTCTC chr1 23838453 23838525 trf 9 8.1 9 88 11 73 0 56 0 43 0.99 TCTCCTCTC chr1 23838486 23838525 trf 2 20.5 2 89 10 64 0 51 0 48 1.00 TC chr1 23840839 23840874 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 23840900 23840945 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 23840971 23841010 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 23845421 23845462 trf 4 10.2 4 94 0 73 2 73 0 24 0.96 CTCC chr1 23849601 23849645 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 23856305 23856338 trf 2 16.5 2 93 0 57 54 0 45 0 0.99 AG chr1 23869194 23869245 trf 12 4.2 12 76 18 52 62 1 35 0 1.06 AGGAAAAAGGAA chr1 23869214 23869250 trf 11 3.2 11 84 7 54 66 0 33 0 0.92 AAGGAAAGAAG chr1 23869282 23869314 trf 10 3.2 10 95 0 55 34 21 43 0 1.53 CAGGGCAGGA chr1 23881927 23881974 trf 4 11.8 4 81 0 58 23 8 42 25 1.82 ATGG chr1 23881931 23881974 trf 12 3.6 12 96 0 77 23 9 41 25 1.84 ATGGATGGATGC chr1 23883748 23883807 trf 2 29.5 2 100 0 118 0 0 50 49 1.00 GT chr1 23893282 23893316 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 23896878 23896907 trf 4 7.2 4 100 0 58 48 27 0 24 1.51 CATA chr1 23897830 23897878 trf 4 12.0 4 90 0 78 4 0 45 50 1.21 TGGT chr1 23899537 23899574 trf 2 19.0 2 94 5 67 51 48 0 0 1.00 CA chr1 23902115 23902157 trf 1 42.0 1 90 0 66 95 4 0 0 0.28 A chr1 23903580 23903618 trf 9 4.2 9 100 0 76 21 57 21 0 1.40 CCCACAGGC chr1 23905973 23906006 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 23906538 23906565 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 23913789 23913907 trf 5 23.6 5 92 0 137 71 0 27 1 0.96 GAAAA chr1 23916303 23916337 trf 2 17.0 2 87 0 50 2 2 47 47 1.32 TG chr1 23916336 23916372 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 23921499 23921537 trf 2 19.0 2 94 0 67 2 0 50 47 1.15 GT chr1 23924085 23924118 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 23924299 23924334 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 23929047 23929086 trf 3 13.0 3 100 0 78 0 0 33 66 0.92 GTT chr1 23929300 23929336 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 23930917 23930951 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 TC chr1 23930950 23930979 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 23931248 23931285 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 23936264 23936310 trf 4 11.5 4 100 0 92 23 26 0 50 1.50 CTAT chr1 23942645 23942680 trf 4 8.8 4 90 0 52 28 20 0 51 1.47 TCAT chr1 23944630 23944662 trf 3 10.7 3 100 0 64 34 65 0 0 0.93 CAC chr1 23944902 23944934 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 23951082 23951166 trf 8 9.9 8 79 12 51 50 38 5 5 1.51 ACACACAG chr1 23951082 23951121 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 23953215 23953262 trf 10 4.9 10 89 5 71 34 0 0 65 0.93 TTATTATTAA chr1 23953215 23953262 trf 3 15.0 3 86 8 67 34 0 0 65 0.93 TTA chr1 23953262 23953287 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 23953431 23953463 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 23955485 23955544 trf 4 14.8 4 96 0 109 52 0 47 0 1.00 GAAG chr1 23955541 23955629 trf 4 22.0 4 95 0 158 72 0 27 0 0.85 GAAA chr1 23960803 23960831 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 23961809 23962027 trf 7 30.9 7 95 3 393 0 56 14 28 1.38 CCTGCCT chr1 23962076 23962130 trf 5 11.2 5 88 4 76 1 18 0 79 0.82 TTCTT chr1 23963135 23963342 trf 6 34.3 6 96 0 207 0 49 0 50 1.00 TCCTCT chr1 23972844 23972879 trf 4 8.8 4 100 0 70 22 0 0 77 0.78 TTTA chr1 23972961 23972987 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 23973934 23973984 trf 12 4.2 12 73 14 50 50 36 2 12 1.51 ACACACATACAC chr1 23976085 23976133 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 23976412 23976488 trf 12 7.0 11 69 21 54 1 1 25 72 1.00 GTTTTTGTGTT chr1 23976412 23976446 trf 4 9.0 4 87 12 54 0 0 23 76 0.79 GTTT chr1 23977251 23977302 trf 4 12.8 4 95 0 93 27 0 21 50 1.48 TATG chr1 23977445 23977483 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 23978825 23978850 trf 11 2.3 11 100 0 50 8 12 24 56 1.62 TCTGGTTGTTA chr1 23984862 23984906 trf 2 22.5 2 95 4 81 52 47 0 0 1.00 AC chr1 23993526 23993559 trf 4 8.2 4 93 0 57 3 27 24 45 1.68 CTGT chr1 24001755 24001781 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 24013869 24013904 trf 4 8.8 4 100 0 70 51 48 0 0 1.00 CAAC chr1 24017187 24017223 trf 3 11.7 3 94 5 63 66 0 0 33 0.92 AAT chr1 24022637 24022686 trf 2 24.5 2 95 0 89 48 48 0 2 1.12 CA chr1 24024009 24024053 trf 4 11.2 4 95 4 81 25 0 25 50 1.50 TGTA chr1 24031770 24031804 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 24036059 24036102 trf 4 10.8 4 94 0 77 23 23 2 51 1.60 ATTC chr1 24042283 24042364 trf 5 16.0 5 77 12 67 44 53 1 1 1.16 CACCA chr1 24042296 24042362 trf 12 5.7 12 83 3 64 45 53 1 0 1.09 CACAACACACCA chr1 24045256 24045307 trf 2 25.5 2 91 0 84 50 45 0 3 1.20 AC chr1 24056398 24056426 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 24061181 24061242 trf 2 30.5 2 89 0 86 49 6 0 44 1.28 TA chr1 24065048 24065077 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 24065542 24065585 trf 12 3.5 12 83 3 50 11 0 6 81 0.87 AGTTTTTTTTTT chr1 24065544 24065579 trf 12 2.9 12 91 0 52 11 0 0 88 0.51 TTTTTTTTTTTA chr1 24068368 24068402 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 24069615 24069735 trf 8 16.0 8 80 13 148 26 15 58 0 1.37 GGCAGAGG chr1 24069663 24069750 trf 6 12.8 6 77 20 75 27 16 56 0 1.40 GGCAGA chr1 24074332 24074380 trf 2 24.5 2 95 4 89 0 50 0 50 1.00 TC chr1 24074379 24074416 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 24084431 24084483 trf 6 8.7 6 97 0 77 50 40 9 0 1.35 CACAGA chr1 24084491 24084519 trf 3 9.3 3 100 0 56 64 35 0 0 0.94 CAA chr1 24085894 24085930 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 24087035 24087081 trf 4 12.0 4 82 13 53 2 2 19 76 1.00 TTTG chr1 24092343 24092370 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 24093348 24093382 trf 4 9.0 4 87 12 54 23 0 0 76 0.79 ATTT chr1 24104423 24104573 trf 2 75.0 2 73 0 57 10 8 45 36 1.67 TG chr1 24109960 24110012 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 24110987 24111029 trf 12 3.7 12 78 12 52 0 38 0 61 0.96 TTTCTTTCTCTC chr1 24110989 24111026 trf 8 4.9 8 83 12 51 0 40 0 59 0.97 TCTTTCTC chr1 24111289 24111364 trf 5 16.0 5 77 13 63 0 1 21 77 0.85 TTTTG chr1 24111641 24111690 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 24112526 24112589 trf 12 5.1 12 90 3 81 0 46 1 52 1.10 TCTCTCTTTCTC chr1 24112526 24112579 trf 2 26.5 2 96 0 97 0 47 0 52 1.00 TC chr1 24114238 24114274 trf 8 4.9 8 83 16 51 77 22 0 0 0.76 CAAAACAA chr1 24117552 24117613 trf 2 30.5 2 93 0 104 0 3 47 49 1.18 GT chr1 24121805 24121854 trf 5 9.8 5 89 6 73 81 18 0 0 0.69 AAAAC chr1 24126719 24126758 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 24128948 24128997 trf 4 12.2 4 100 0 98 0 26 0 73 0.83 CTTT chr1 24131167 24131193 trf 4 6.5 4 100 0 52 73 26 0 0 0.84 ACAA chr1 24133369 24133395 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 24136866 24136903 trf 2 18.5 2 94 0 65 45 51 2 0 1.15 CA chr1 24138296 24138364 trf 2 34.0 2 89 0 82 45 45 1 7 1.40 AC chr1 24139127 24139154 trf 8 3.4 8 100 0 54 66 0 0 33 0.92 AAAATATT chr1 24143528 24143572 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 24144579 24144636 trf 4 13.5 4 89 7 62 0 0 21 78 0.74 TGTT chr1 24144583 24144632 trf 5 10.8 5 95 4 63 0 0 20 79 0.73 TTTTG chr1 24145219 24145277 trf 5 11.4 5 96 3 107 18 0 0 81 0.70 TTATT chr1 24146199 24146256 trf 4 14.2 4 100 0 114 26 24 0 49 1.51 ATCT chr1 24160786 24160812 trf 3 8.7 3 100 0 52 34 34 30 0 1.58 CAG chr1 24171977 24172014 trf 4 9.2 4 93 0 65 27 27 0 45 1.54 ATTC chr1 24174151 24174203 trf 8 6.5 8 77 0 50 13 63 0 23 1.29 CCCTCCAC chr1 24178704 24178742 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 24180281 24180315 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 24182857 24182931 trf 6 12.8 6 87 12 79 1 0 16 82 0.74 TTTTGT chr1 24182857 24182929 trf 5 13.8 5 81 13 67 1 0 15 83 0.72 TTTTG chr1 24188162 24188194 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 24197513 24197551 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 24197550 24197630 trf 2 40.5 2 88 2 108 51 5 43 0 1.23 GA chr1 24202905 24202959 trf 2 27.0 2 92 0 90 1 0 48 50 1.11 TG chr1 24207588 24207626 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 24207631 24207702 trf 4 17.8 4 97 0 133 0 26 0 73 0.84 CTTT chr1 24213628 24213662 trf 2 17.0 2 87 0 50 5 47 0 47 1.26 CT chr1 24227663 24227721 trf 2 29.0 2 92 0 98 1 1 50 46 1.22 GT chr1 24228401 24228435 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 24243840 24243918 trf 5 15.8 5 95 2 104 67 20 11 0 1.21 ACAAG chr1 24244287 24244329 trf 2 21.0 2 85 9 59 45 0 4 50 1.23 TA chr1 24244508 24244556 trf 8 6.3 7 86 13 60 0 0 22 77 0.78 TGTTTTT chr1 24244508 24244542 trf 4 9.0 4 87 12 54 0 0 20 79 0.73 TGTT chr1 24247191 24247223 trf 12 2.5 13 90 10 57 6 15 0 78 0.95 CATTTTTCTTTTT chr1 24247193 24247223 trf 6 4.8 6 95 4 51 3 13 0 83 0.77 TTTTTC chr1 24253432 24253471 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 24255935 24255968 trf 2 16.5 2 93 0 57 51 45 0 3 1.16 AC chr1 24256756 24257037 trf 3 93.7 3 96 1 348 0 39 0 60 0.97 TTC chr1 24260738 24260784 trf 11 4.2 11 97 0 83 36 19 19 23 1.95 CAAAGGTCATT chr1 24262472 24262513 trf 8 5.0 8 84 3 55 85 14 0 0 0.60 CAAAAAAA chr1 24265966 24266136 trf 2 85.0 2 77 0 160 45 42 6 5 1.52 CA chr1 24270255 24270303 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 24270636 24270667 trf 3 10.3 3 100 0 62 0 32 0 67 0.91 TCT chr1 24281483 24281521 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 24281520 24281566 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 24281687 24281735 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 24283729 24283779 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 24288110 24288168 trf 2 29.0 2 96 0 107 51 0 48 0 1.00 GA chr1 24288248 24288293 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 24293277 24293328 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 24308717 24308839 trf 2 61.0 2 80 0 55 45 13 3 37 1.59 AT chr1 24313978 24314020 trf 1 42.0 1 92 0 66 95 2 2 0 0.32 A chr1 24315046 24315083 trf 6 6.5 6 81 12 51 83 13 2 0 0.74 AAAAAC chr1 24315048 24315096 trf 11 4.4 11 80 17 55 79 18 2 0 0.84 AAACAAAAAAC chr1 24317170 24317216 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 24319990 24320036 trf 2 23.0 2 95 0 83 47 50 0 2 1.13 CA chr1 24324851 24324920 trf 6 11.5 6 100 0 138 33 0 66 0 0.92 GAGAGG chr1 24326862 24327076 trf 5 42.8 5 96 1 322 0 35 0 64 0.93 CTTTC chr1 24328580 24328667 trf 8 11.5 8 76 16 78 43 39 8 9 1.66 ACACATGC chr1 24328595 24328637 trf 2 21.0 2 85 0 57 47 45 4 2 1.36 CA chr1 24331029 24331055 trf 4 6.5 4 100 0 52 0 0 46 53 1.00 TTGG chr1 24331052 24331077 trf 8 3.1 8 100 0 50 0 0 16 84 0.63 GTTTTTTT chr1 24331236 24331819 trf 2 311.0 2 86 13 868 46 53 0 0 1.03 AC chr1 24332030 24332072 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 GA chr1 24333181 24333244 trf 4 15.8 4 100 0 126 0 49 0 50 1.00 CTTC chr1 24333246 24333314 trf 4 17.0 4 100 0 136 0 25 0 75 0.81 TCTT chr1 24334904 24334930 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 24337183 24337237 trf 4 13.5 4 100 0 108 0 50 0 50 1.00 CTTC chr1 24337833 24337861 trf 3 9.3 3 100 0 56 35 32 0 32 1.58 ATC chr1 24337859 24337888 trf 3 9.7 3 100 0 58 65 34 0 0 0.93 CAA chr1 24338124 24338155 trf 4 7.8 4 100 0 62 0 25 25 48 1.52 CTGT chr1 24339284 24339311 trf 6 4.5 6 100 0 54 14 0 0 85 0.61 TTTATT chr1 24347690 24347760 trf 8 8.8 8 90 4 79 15 25 34 24 1.95 CCTGGGAT chr1 24348465 24348520 trf 4 14.0 4 96 3 103 25 25 0 49 1.51 TATC chr1 24349685 24349710 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 24351928 24351966 trf 4 9.5 4 100 0 76 52 47 0 0 1.00 AACC chr1 24351960 24352020 trf 12 4.5 13 80 16 61 66 30 1 1 1.11 AACCAAACAAACA chr1 24351963 24352006 trf 4 10.2 4 85 14 52 69 27 0 2 1.00 CAAA chr1 24353054 24353157 trf 2 54.0 2 88 9 162 0 51 0 48 1.00 TC chr1 24354991 24355084 trf 4 24.5 4 85 10 133 50 29 0 20 1.48 CATA chr1 24357049 24357086 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 24358853 24358883 trf 8 3.8 8 95 0 51 13 0 6 80 0.91 TATTTTGT chr1 24359636 24359699 trf 4 15.5 4 96 3 117 0 25 0 74 0.82 TTTC chr1 24359643 24359740 trf 12 8.0 12 91 2 95 0 37 0 62 0.95 CTTTCTTCCTTC chr1 24359689 24359816 trf 4 33.2 4 78 15 110 0 49 0 50 1.00 TTCC chr1 24359734 24359888 trf 3 51.3 3 81 5 168 0 58 0 41 0.98 TCC chr1 24359886 24359951 trf 3 21.7 3 100 0 130 0 33 0 66 0.92 CTT chr1 24365990 24366069 trf 12 6.4 12 85 5 104 41 48 8 1 1.42 ACACACACACGC chr1 24365990 24366069 trf 8 9.9 8 81 0 86 41 48 8 1 1.42 ACACACAC chr1 24366003 24366068 trf 6 10.8 6 89 0 85 40 49 9 1 1.44 CACACG chr1 24370116 24370170 trf 10 5.5 10 73 20 51 38 11 7 42 1.68 TATATATGCA chr1 24375246 24375400 trf 5 30.8 5 96 2 184 53 0 46 0 1.00 GAAAG chr1 24377126 24377374 trf 4 59.2 4 82 8 174 0 54 0 45 1.03 CTTC chr1 24377395 24377454 trf 4 15.2 4 77 7 50 0 47 0 52 1.00 CTCT chr1 24377465 24377531 trf 4 17.0 4 93 6 118 0 24 0 75 0.80 TCTT chr1 24380084 24380378 trf 12 23.3 12 82 9 345 0 9 40 49 1.40 GTGTGTGTGTCT chr1 24382199 24382237 trf 4 9.5 4 100 0 76 50 26 0 23 1.50 CATA chr1 24382962 24382987 trf 4 6.2 4 100 0 50 24 24 52 0 1.48 GCAG chr1 24392117 24392179 trf 2 31.0 2 90 0 97 4 0 45 50 1.23 TG chr1 24400953 24401005 trf 2 26.0 2 96 0 95 50 48 0 1 1.12 AC chr1 24402930 24402978 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 24404235 24404322 trf 3 29.0 3 97 0 165 0 65 0 34 0.93 TCC chr1 24406360 24406401 trf 2 21.0 2 95 5 75 0 0 51 48 1.00 TG chr1 24407481 24407523 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 24413344 24413376 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 24413958 24414017 trf 2 29.5 2 85 0 82 50 42 6 0 1.28 AC chr1 24415482 24415509 trf 5 5.4 5 100 0 54 81 18 0 0 0.69 AAACA chr1 24431315 24431349 trf 5 6.4 5 93 6 50 41 0 0 58 0.98 TTATA chr1 24435978 24436135 trf 6 25.7 6 90 3 107 0 26 0 73 0.84 TTTCCT chr1 24436754 24436810 trf 2 28.5 2 92 3 96 46 0 1 51 1.11 TA chr1 24436756 24436907 trf 6 26.3 6 77 14 95 37 1 13 46 1.55 TATATG chr1 24437738 24437779 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 24439533 24439610 trf 2 38.5 2 92 0 127 49 1 49 0 1.09 GA chr1 24440413 24440486 trf 2 36.5 2 94 0 128 1 1 49 47 1.18 GT chr1 24442813 24442880 trf 2 33.5 2 90 0 107 2 1 44 50 1.26 TG chr1 24451267 24451358 trf 9 10.2 9 76 13 73 34 1 64 0 1.01 AGGAGGAGG chr1 24451267 24451358 trf 6 15.3 6 75 13 73 34 1 64 0 1.01 AGGAGG chr1 24453569 24453719 trf 12 12.2 12 82 4 138 0 14 50 35 1.44 TGCGTGTGTGTG chr1 24453574 24453721 trf 8 17.9 8 79 5 105 0 14 50 35 1.43 GTGTGTGC chr1 24453578 24453699 trf 4 31.8 4 80 9 65 0 14 50 34 1.44 GTGC chr1 24453895 24453938 trf 4 11.5 4 85 14 65 79 20 0 0 0.74 CAAA chr1 24456241 24456277 trf 4 8.8 4 96 3 63 27 22 25 25 2.00 AGTC chr1 24456276 24456326 trf 4 12.5 4 100 0 100 50 0 24 26 1.50 TAGA chr1 24457579 24457634 trf 4 13.8 4 96 0 101 1 23 49 25 1.60 GTGC chr1 24457631 24457668 trf 2 18.5 2 94 0 65 2 0 48 48 1.15 GT chr1 24458843 24458909 trf 2 33.0 2 100 0 132 50 0 50 0 1.00 GA chr1 24465894 24465939 trf 5 9.0 5 95 0 63 73 20 6 0 1.05 CAAAA chr1 24466796 24466838 trf 6 7.0 6 81 10 50 21 0 50 28 1.49 TGGTGA chr1 24473713 24473763 trf 2 25.0 2 91 0 82 50 46 0 4 1.20 AC chr1 24475968 24476159 trf 4 49.2 4 87 6 232 68 2 29 0 1.02 GAAA chr1 24476156 24476191 trf 4 8.8 4 100 0 70 51 0 48 0 1.00 AAGG chr1 24478762 24478805 trf 3 14.3 3 100 0 86 67 0 0 32 0.91 AAT chr1 24482243 24482279 trf 2 18.0 2 94 0 63 47 50 2 0 1.15 AC chr1 24487960 24488057 trf 3 33.3 3 87 10 148 0 65 0 34 0.93 TCC chr1 24488062 24488123 trf 2 30.5 2 100 0 122 0 50 0 49 1.00 CT chr1 24488506 24488571 trf 4 16.2 4 96 0 121 0 26 0 73 0.83 TCTT chr1 24488569 24488616 trf 9 5.3 9 92 5 78 10 0 19 70 1.16 TTTTTGGTA chr1 24494795 24494828 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 AAAC chr1 24503146 24503229 trf 5 16.6 5 100 0 166 0 19 0 80 0.71 TTTTC chr1 24503147 24503314 trf 4 38.0 4 98 0 154 0 25 0 74 0.82 TTTC chr1 24503729 24503758 trf 6 4.8 6 100 0 58 0 0 13 86 0.58 TTTTTG chr1 24505051 24505078 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 24506069 24506119 trf 4 12.2 4 91 4 82 28 0 24 48 1.52 ATGT chr1 24506922 24506958 trf 2 18.0 2 88 0 54 50 0 2 47 1.15 AT chr1 24507295 24507330 trf 4 8.8 4 100 0 70 25 0 0 74 0.82 TATT chr1 24513828 24513863 trf 2 17.5 2 93 0 61 48 48 0 2 1.16 CA chr1 24518888 24518921 trf 2 16.5 2 93 0 57 3 0 48 48 1.17 GT chr1 24525732 24525824 trf 6 15.3 6 89 0 130 48 5 45 0 1.25 GAGAGA chr1 24525732 24525824 trf 4 23.0 4 90 0 130 48 5 45 0 1.25 GAGA chr1 24533410 24533718 trf 8 39.0 8 70 22 124 0 63 0 35 1.02 TCCCTCTC chr1 24533473 24533727 trf 12 21.8 12 64 22 64 0 66 0 32 0.95 CTCCCCCTCTCC chr1 24535539 24535576 trf 12 2.9 13 92 8 67 48 0 0 51 1.00 AATTTAATTAATT chr1 24535542 24535576 trf 4 8.2 4 93 6 59 47 0 0 52 1.00 TTAA chr1 24537627 24537653 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 24539094 24539128 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 24548407 24548448 trf 2 20.5 2 94 0 73 51 2 0 46 1.14 AT chr1 24549653 24549696 trf 7 6.4 7 86 7 63 86 13 0 0 0.58 AAAAAAC chr1 24551403 24551441 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 CT chr1 24551440 24551499 trf 2 29.5 2 96 0 109 0 0 47 52 1.00 TG chr1 24558686 24558725 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 24559855 24559893 trf 4 9.8 4 88 5 60 76 21 2 0 0.91 AAAC chr1 24560044 24560085 trf 7 5.6 7 91 8 64 14 0 0 85 0.60 TTTTATT chr1 24560044 24560086 trf 8 5.5 8 88 5 61 14 0 0 85 0.59 TTTTATTT chr1 24560555 24560603 trf 4 12.2 4 82 4 53 68 25 6 0 1.12 ACAA chr1 24562428 24562513 trf 2 43.5 2 87 4 120 4 0 45 49 1.23 GT chr1 24563660 24563774 trf 4 28.5 4 93 3 167 44 0 55 0 0.99 GAAG chr1 24565437 24565487 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 24570056 24570155 trf 5 20.2 5 91 4 76 29 0 70 0 0.87 GGAAG chr1 24570056 24570151 trf 10 9.6 10 91 2 111 28 0 71 0 0.86 GGAAGGGGAG chr1 24570625 24570660 trf 2 17.5 2 100 0 70 48 0 51 0 1.00 GA chr1 24570980 24571033 trf 2 26.5 2 96 0 97 47 0 1 50 1.12 TA chr1 24574365 24574435 trf 2 35.0 2 94 0 122 0 50 0 50 1.00 TC chr1 24576094 24576161 trf 2 33.5 2 96 0 89 0 7 49 43 1.31 TG chr1 24579539 24579759 trf 4 58.0 4 71 10 95 31 18 4 45 1.68 CTAT chr1 24579541 24579835 trf 11 26.3 11 70 12 77 30 20 4 44 1.70 ATCTATCTATC chr1 24579580 24579613 trf 2 16.0 2 93 6 57 48 3 0 48 1.17 TA chr1 24579831 24579859 trf 12 2.3 12 100 0 56 25 50 0 25 1.50 CATCCATCCATC chr1 24579831 24579859 trf 8 3.5 8 100 0 56 25 50 0 25 1.50 CATCCATC chr1 24582588 24582629 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 24582632 24582680 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 24589011 24589057 trf 4 11.5 4 86 9 67 0 50 0 50 1.00 CCTT chr1 24600608 24600637 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 24600832 24600882 trf 6 8.7 6 81 14 61 0 0 16 84 0.63 TTTTTG chr1 24601146 24601176 trf 6 5.0 6 100 0 60 0 0 16 83 0.65 TGTTTT chr1 24605533 24605568 trf 4 9.2 4 93 6 56 80 20 0 0 0.72 AAAC chr1 24610578 24610644 trf 10 6.6 10 89 3 50 46 46 4 1 1.32 CACACAAGCA chr1 24610596 24610649 trf 2 26.5 2 100 0 106 49 50 0 0 1.00 CA chr1 24625081 24625206 trf 2 64.0 2 85 7 150 45 48 4 1 1.33 AC chr1 24626360 24626390 trf 4 7.5 4 100 0 60 50 23 26 0 1.50 AGAC chr1 24626891 24626935 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 24631063 24631300 trf 8 31.6 8 73 15 129 35 0 63 0 1.06 GGAGAGAG chr1 24631073 24631244 trf 6 27.0 6 71 16 96 33 0 66 0 0.97 GGGAGA chr1 24632008 24632053 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 24632052 24632104 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 24633465 24633536 trf 5 14.2 5 100 0 142 0 40 0 59 0.98 CTCTT chr1 24646838 24646870 trf 12 2.6 13 90 9 50 0 0 21 78 0.76 TTTGTTTGTTTTG chr1 24646950 24646982 trf 6 5.3 6 100 0 64 0 50 15 34 1.45 CTGCCT chr1 24649860 24649901 trf 3 14.3 3 80 10 50 0 0 29 70 0.87 TGT chr1 24649863 24649918 trf 5 10.8 5 81 11 51 0 0 27 72 0.85 TTTTG chr1 24653269 24653355 trf 2 43.0 2 90 0 136 50 4 0 45 1.22 AT chr1 24667242 24667528 trf 9 30.8 9 76 19 193 0 64 1 34 1.02 CTCTCTCCC chr1 24667321 24667538 trf 2 116.5 2 69 13 70 0 61 1 36 1.07 CT chr1 24669192 24669239 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 24674960 24674989 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 24675476 24675548 trf 6 12.0 6 96 0 135 18 16 65 0 1.28 GGAGGC chr1 24676549 24676587 trf 2 19.0 2 94 0 67 0 47 0 52 1.00 CT chr1 24679599 24679659 trf 2 29.5 2 81 3 57 46 41 10 1 1.47 CA chr1 24687441 24687467 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 24689173 24689232 trf 4 14.8 4 74 0 55 6 27 16 49 1.71 TCTG chr1 24689198 24689448 trf 4 62.2 4 87 0 311 20 26 5 48 1.70 CTAT chr1 24693955 24694019 trf 8 7.8 8 88 8 85 20 1 0 78 0.84 TTATTTAT chr1 24693976 24694019 trf 4 10.8 4 100 0 86 23 0 0 76 0.78 TTTA chr1 24694585 24694613 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 24695186 24695232 trf 2 23.0 2 95 0 83 52 47 0 0 1.00 AC chr1 24697640 24697673 trf 3 11.3 3 93 6 59 36 0 0 63 0.95 ATT chr1 24698859 24698904 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 24702072 24702113 trf 2 20.5 2 89 0 64 48 2 2 46 1.28 AT chr1 24704125 24704171 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 24710753 24710778 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 24710777 24710830 trf 2 26.5 2 90 0 79 43 0 3 52 1.19 TA chr1 24712161 24712199 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 24714410 24714467 trf 3 19.0 3 96 0 105 35 0 64 0 0.93 GAG chr1 24715320 24715410 trf 7 12.0 7 70 13 63 30 6 23 40 1.80 TGTATAG chr1 24715877 24715910 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 24716711 24716809 trf 4 24.5 4 95 0 133 31 0 68 0 0.90 GGGA chr1 24716769 24716804 trf 2 17.5 2 93 0 61 45 0 54 0 0.99 GA chr1 24716806 24716847 trf 4 10.2 4 100 0 82 26 24 48 0 1.51 AGGC chr1 24736496 24736526 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 24736525 24736562 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 24738611 24738637 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 24743460 24743505 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 24743502 24743545 trf 4 10.8 4 87 0 59 0 27 20 51 1.48 TGTC chr1 24745294 24745357 trf 2 31.5 2 85 6 83 46 1 52 0 1.10 GA chr1 24757105 24757143 trf 2 19.5 2 83 5 51 47 2 2 47 1.30 AT chr1 24757163 24757202 trf 4 9.8 4 100 0 78 25 0 0 74 0.82 ATTT chr1 24759726 24759765 trf 2 19.5 2 94 0 69 51 46 0 2 1.14 AC chr1 24759764 24759809 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 24765932 24765959 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 24767003 24767057 trf 2 27.5 2 96 3 101 50 0 50 0 1.00 AG chr1 24768185 24768230 trf 9 5.2 9 82 15 51 0 51 0 48 1.00 TCCTCCTCT chr1 24769929 24770001 trf 4 18.0 4 82 17 80 1 0 23 75 0.89 GTTT chr1 24776229 24776269 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 24777640 24777728 trf 4 21.2 4 85 9 115 70 2 26 1 1.06 GAAA chr1 24782029 24782217 trf 5 35.0 5 85 10 132 60 37 2 0 1.09 AAACC chr1 24782094 24782215 trf 6 19.3 6 90 9 165 65 34 0 0 0.93 AAACCA chr1 24782135 24782176 trf 8 5.5 8 91 8 61 63 36 0 0 0.95 AAACACCA chr1 24782787 24782817 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 24784651 24784680 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 24788140 24788202 trf 3 20.7 3 93 0 106 0 62 0 37 0.95 CTC chr1 24790529 24790563 trf 4 8.5 4 93 0 59 52 44 0 2 1.16 AACC chr1 24790671 24790706 trf 3 11.7 3 100 0 70 68 0 0 31 0.90 AAT chr1 24800520 24800581 trf 2 30.5 2 86 6 88 4 0 44 50 1.23 TG chr1 24813425 24813676 trf 6 41.8 6 85 0 277 50 7 41 0 1.30 AGAGAG chr1 24813621 24813710 trf 4 22.8 4 79 4 56 52 12 34 0 1.39 AGAC chr1 24817750 24817831 trf 4 20.0 4 94 2 144 50 48 0 1 1.08 AACC chr1 24820600 24820662 trf 11 5.4 11 81 11 79 46 3 0 50 1.17 ATATATATTAT chr1 24820600 24820675 trf 9 8.1 9 75 11 71 44 4 0 52 1.20 ATATATATT chr1 24820600 24820662 trf 2 34.0 2 75 18 64 46 3 0 50 1.17 AT chr1 24824697 24824722 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 24828347 24828376 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 24828848 24828990 trf 4 35.5 4 98 0 212 0 30 0 69 0.88 TTTC chr1 24832778 24832827 trf 2 24.5 2 91 0 71 46 4 2 46 1.33 TA chr1 24832826 24832876 trf 2 25.0 2 83 0 64 0 8 42 50 1.32 TG chr1 24832828 24832887 trf 8 6.9 8 83 14 73 1 10 38 49 1.47 TGTGTGTC chr1 24835565 24835606 trf 1 41.0 1 95 0 73 97 0 2 0 0.17 A chr1 24835593 24835646 trf 9 6.0 9 77 20 58 79 0 20 0 0.74 AAAAGAAAG chr1 24835598 24835646 trf 4 11.0 4 84 10 51 77 0 22 0 0.78 AAAG chr1 24844947 24844981 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 24846116 24846149 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 24848281 24848323 trf 1 42.0 1 100 0 84 0 0 0 100 0.00 T chr1 24852999 24853089 trf 4 22.5 4 97 0 153 45 0 54 0 0.99 GGAA chr1 24858181 24858223 trf 1 42.0 1 100 0 84 100 0 0 0 0.00 A chr1 24861019 24861047 trf 12 2.3 12 100 0 56 32 0 0 67 0.91 ATTTATTTTTAA chr1 24862974 24863030 trf 2 28.0 2 96 0 103 1 0 48 50 1.11 TG chr1 24863243 24863337 trf 3 31.3 3 100 0 188 0 34 0 65 0.93 CTT chr1 24863335 24863438 trf 3 34.7 3 82 1 109 0 59 0 39 1.04 TCC chr1 24863961 24864071 trf 6 18.3 6 82 14 138 0 64 0 34 1.00 TCCCTC chr1 24863964 24864170 trf 8 25.6 8 82 13 210 0 60 2 36 1.16 CTCTCCCT chr1 24864272 24864309 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 24865427 24865490 trf 2 31.5 2 88 0 90 50 42 3 3 1.34 AC chr1 24867375 24867457 trf 5 16.8 5 98 1 150 0 58 0 41 0.98 TCCTC chr1 24869414 24869503 trf 1 89.0 1 82 0 97 6 2 1 89 0.60 T chr1 24869630 24869664 trf 2 17.5 2 93 6 61 0 50 0 50 1.00 CT chr1 24872169 24872298 trf 4 32.2 4 96 0 105 0 62 0 37 0.95 TCTC chr1 24872295 24872355 trf 4 15.2 4 96 3 113 0 25 0 75 0.81 TCTT chr1 24873978 24874025 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 24876239 24876353 trf 6 19.0 6 94 0 138 50 8 41 0 1.33 GAGAGA chr1 24877621 24877896 trf 6 45.7 6 87 7 197 53 0 45 0 1.08 AAGAGG chr1 24877690 24877900 trf 6 35.2 6 95 0 224 56 0 43 0 0.99 AGAAGA chr1 24879271 24879320 trf 9 5.4 10 81 16 54 42 0 16 40 1.48 ATATGATGAT chr1 24885355 24885450 trf 4 24.0 4 95 2 165 23 25 2 49 1.61 ATCT chr1 24886919 24886987 trf 8 8.5 8 79 12 77 86 13 0 0 0.56 AAAAAACA chr1 24886919 24886987 trf 1 68.0 1 73 0 55 86 13 0 0 0.56 A chr1 24888240 24888280 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 24890235 24890266 trf 6 5.2 6 96 0 53 0 3 80 16 0.83 GGGGTG chr1 24892015 24892087 trf 4 18.0 4 100 0 144 0 75 0 25 0.81 CCTC chr1 24898430 24898482 trf 2 26.0 2 84 0 68 3 3 46 46 1.39 GT chr1 24899535 24899578 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 24899994 24900233 trf 4 60.0 4 72 8 76 21 26 8 43 1.81 TATC chr1 24910176 24910233 trf 4 14.5 4 92 3 98 0 45 0 54 0.99 TTCC chr1 24910230 24910316 trf 4 21.5 4 97 0 163 0 24 0 75 0.80 CTTT chr1 24911765 24911795 trf 2 15.0 2 92 0 51 46 50 0 3 1.18 AC chr1 24919843 24919893 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 24924336 24924382 trf 2 22.5 2 95 4 83 0 47 2 50 1.13 TC chr1 24925565 24925608 trf 4 10.8 4 100 0 86 25 0 0 74 0.82 TTAT chr1 24928023 24928059 trf 4 9.0 4 100 0 72 75 25 0 0 0.81 AAAC chr1 24928238 24928288 trf 4 12.5 4 100 0 100 76 0 0 24 0.80 AATA chr1 24929711 24929794 trf 4 20.8 4 97 0 157 0 49 0 50 1.00 CCTT chr1 24932938 24932974 trf 6 6.0 6 93 0 54 0 0 11 88 0.50 TTTTTG chr1 24937403 24937431 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 24940968 24940998 trf 4 7.5 4 100 0 60 76 23 0 0 0.78 AAAC chr1 24941527 24941715 trf 5 38.0 5 95 2 137 0 35 0 64 0.94 TCTTC chr1 24941532 24941676 trf 5 28.4 5 96 2 180 0 28 0 71 0.86 CTTTT chr1 24941626 24941742 trf 5 23.2 5 98 0 97 0 56 0 43 0.99 CTTCC chr1 24941678 24941756 trf 5 15.6 5 97 0 75 0 67 0 32 0.90 TCCCC chr1 24941717 24941770 trf 5 10.6 5 93 0 52 0 67 0 32 0.91 CTCCT chr1 24941717 24941770 trf 10 5.3 10 90 0 61 0 67 0 32 0.91 CTCCCCTCCT chr1 24942146 24942263 trf 10 11.9 10 72 7 69 5 8 35 50 1.57 TGTGTGTGTC chr1 24942146 24942265 trf 8 14.9 8 73 3 69 5 8 35 50 1.57 TGTGTGTG chr1 24943207 24943262 trf 5 11.8 5 90 7 73 16 0 1 81 0.77 TTTTA chr1 24947852 24947905 trf 6 8.8 6 93 0 52 33 18 0 47 1.49 ATTATC chr1 24947867 24947902 trf 3 11.7 3 93 0 61 34 28 0 37 1.58 ATC chr1 24948997 24949038 trf 5 8.8 5 84 15 61 0 0 17 82 0.66 TTTTG chr1 24950724 24950783 trf 2 30.0 2 93 3 102 0 0 49 50 1.00 GT chr1 24958725 24958779 trf 4 13.5 4 100 0 108 50 0 25 24 1.50 GATA chr1 24965231 24965260 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 24975122 24975164 trf 4 10.5 4 94 0 75 23 0 2 73 0.94 TATT chr1 24986230 24986263 trf 3 11.0 3 93 0 57 69 0 0 30 0.88 TAA chr1 24987454 24987589 trf 4 34.0 4 91 4 220 48 0 25 24 1.56 TAGA chr1 24989150 24989200 trf 8 6.5 8 79 9 59 0 36 14 50 1.43 TCTCTGTC chr1 24996324 24996369 trf 2 22.5 2 95 0 81 2 0 46 51 1.13 TG chr1 25001451 25001504 trf 2 26.5 2 100 0 106 0 49 0 50 1.00 TC chr1 25004306 25004348 trf 5 9.2 5 97 2 56 0 11 0 88 0.53 TCTTT chr1 25005986 25006068 trf 5 16.6 5 94 2 148 78 0 21 0 0.76 AAGAA chr1 25006105 25006146 trf 5 8.6 5 89 10 68 82 0 0 17 0.66 AAAAT chr1 25006424 25006510 trf 4 21.5 4 97 0 109 0 43 0 56 0.99 CCTT chr1 25006507 25006541 trf 4 8.5 4 93 0 59 0 70 0 29 0.87 TCCC chr1 25006541 25006644 trf 4 25.2 4 91 3 161 0 28 0 70 0.93 TCTT chr1 25011007 25011034 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 25012051 25012082 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 25012436 25012463 trf 7 3.9 7 100 0 54 88 11 0 0 0.50 AAAAAAC chr1 25019951 25020011 trf 2 30.0 2 96 0 111 1 0 48 50 1.11 GT chr1 25028330 25028389 trf 9 6.3 9 86 7 75 33 20 0 45 1.51 TATATCATC chr1 25029857 25029899 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 25032888 25032918 trf 7 4.4 7 91 8 53 86 0 13 0 0.57 AAAAAAG chr1 25035489 25035545 trf 7 7.9 7 90 4 58 83 16 0 0 0.64 AAAAAAC chr1 25035504 25035544 trf 7 5.7 7 96 0 71 77 22 0 0 0.77 AAAAACC chr1 25035827 25035887 trf 2 30.0 2 82 0 75 48 6 0 45 1.29 AT chr1 25036338 25036373 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 25039038 25039079 trf 2 20.5 2 100 0 82 51 0 0 48 1.00 AT chr1 25040305 25040485 trf 5 36.4 5 87 4 125 67 31 0 1 0.98 AAAAC chr1 25040306 25040431 trf 5 24.8 5 94 1 178 64 34 0 0 0.99 AAACC chr1 25040645 25040702 trf 9 6.3 9 93 0 69 33 7 0 59 1.24 CATTATTAT chr1 25040646 25040696 trf 3 16.7 3 95 0 91 34 2 0 64 1.05 ATT chr1 25052264 25052503 trf 12 22.0 12 83 10 186 0 38 7 53 1.33 CTCTGTCTCTCT chr1 25052264 25052449 trf 10 17.9 10 83 11 168 0 38 6 54 1.31 CTCTTCTCTT chr1 25052275 25052503 trf 10 22.3 10 82 7 112 0 38 7 53 1.29 TCTCTTTCTC chr1 25060923 25060964 trf 8 5.4 8 80 8 50 2 0 14 82 0.76 TTTGTTTT chr1 25060923 25060963 trf 7 5.4 7 82 11 53 2 0 15 82 0.77 TTTGTTT chr1 25061822 25061853 trf 6 5.2 6 92 0 53 0 12 0 87 0.55 TTTTCT chr1 25063319 25063391 trf 2 36.0 2 94 0 126 50 2 47 0 1.15 AG chr1 25071801 25071849 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 25073353 25073734 trf 4 97.5 4 75 13 150 26 18 6 48 1.73 TATC chr1 25077251 25077298 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 25080683 25080708 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 25080707 25080734 trf 2 13.5 2 100 0 54 48 0 0 51 1.00 TA chr1 25080960 25080994 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 TA chr1 25087845 25087873 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 25098225 25098301 trf 2 38.0 2 94 0 134 48 1 1 48 1.18 AT chr1 25100832 25100871 trf 12 3.3 12 89 3 62 51 41 5 2 1.38 CACAGACACACA chr1 25100832 25100875 trf 2 22.0 2 80 4 52 51 41 4 2 1.35 CA chr1 25103516 25103574 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 25105040 25105246 trf 6 33.7 6 95 3 367 0 15 34 50 1.45 GTGTCT chr1 25114345 25114371 trf 4 6.5 4 100 0 52 0 26 23 50 1.50 TCTG chr1 25118686 25118721 trf 5 7.0 5 100 0 70 0 20 0 80 0.72 TTCTT chr1 25118720 25118768 trf 4 12.0 4 90 0 78 25 22 2 50 1.60 TATC chr1 25118863 25118917 trf 4 14.0 4 84 7 76 1 22 0 75 0.89 TTCT chr1 25119463 25119510 trf 4 12.0 4 95 4 87 25 0 23 51 1.49 TGTA chr1 25136370 25136437 trf 12 5.6 12 89 0 71 13 23 11 50 1.75 TATCTATCTGTC chr1 25136370 25136437 trf 4 16.8 4 96 0 62 13 23 11 50 1.75 TATC chr1 25144882 25144925 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 25144924 25144951 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 25147471 25147637 trf 2 86.5 2 76 12 152 48 6 44 0 1.28 AG chr1 25149228 25149284 trf 6 9.0 6 74 14 51 1 1 16 80 0.88 GTTTTT chr1 25149629 25149666 trf 2 18.5 2 100 0 74 51 0 0 48 1.00 AT chr1 25153088 25153114 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 CT chr1 25153113 25153151 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 25153493 25153578 trf 2 44.0 2 93 6 149 0 0 51 48 1.00 TG chr1 25158403 25158457 trf 2 27.0 2 96 0 99 1 0 48 50 1.11 TG chr1 25162884 25162989 trf 6 18.0 6 92 5 180 34 0 17 48 1.47 GTATAT chr1 25165053 25165104 trf 4 12.8 4 95 0 93 50 0 47 1 1.12 AAGG chr1 25165822 25165858 trf 5 7.8 5 96 3 51 88 0 11 0 0.50 AAAAG chr1 25169352 25169379 trf 2 13.5 2 100 0 54 0 51 0 48 1.00 CT chr1 25176117 25176180 trf 4 15.8 4 96 0 117 1 49 0 49 1.10 TTCC chr1 25176212 25176264 trf 8 7.1 8 77 20 51 0 36 11 51 1.38 TGTCTCTC chr1 25176228 25176266 trf 2 19.5 2 83 5 51 0 44 5 50 1.24 TC chr1 25178219 25178270 trf 3 17.7 3 80 15 63 68 27 1 1 1.11 ACA chr1 25183065 25183160 trf 12 8.2 11 80 14 50 4 48 0 47 1.21 CTTCTCACTCT chr1 25183099 25183161 trf 2 32.0 2 93 6 110 0 50 0 50 1.00 TC chr1 25183158 25183204 trf 4 11.5 4 95 0 83 0 71 0 28 0.86 CTCC chr1 25185635 25185703 trf 2 34.0 2 80 0 55 48 38 8 4 1.54 CA chr1 25185781 25185827 trf 8 6.0 8 77 10 51 52 32 13 2 1.52 ACACAGAC chr1 25188625 25188684 trf 5 12.0 5 96 3 111 59 0 40 0 0.97 AGAGA chr1 25188820 25188876 trf 2 27.5 2 89 3 85 50 1 46 1 1.22 GA chr1 25190833 25190869 trf 2 18.5 2 94 5 65 0 0 50 50 1.00 TG chr1 25190963 25191009 trf 5 9.8 5 86 13 55 0 0 19 80 0.71 TTTTG chr1 25191513 25191563 trf 2 25.0 2 95 0 91 52 0 48 0 1.00 GA chr1 25195076 25195133 trf 2 28.5 2 89 0 87 1 1 47 49 1.22 GT chr1 25195717 25195751 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 25197588 25197777 trf 6 31.8 6 66 16 54 13 21 17 47 1.82 TCTATG chr1 25197606 25197755 trf 10 14.7 10 67 13 72 12 22 18 47 1.81 TCTATGTCTG chr1 25197780 25197875 trf 12 8.4 12 80 9 76 1 25 30 43 1.62 TGTCTGTGCCTG chr1 25197783 25197860 trf 6 13.8 6 75 15 67 0 27 32 40 1.57 CTGTGC chr1 25199071 25199245 trf 6 29.2 6 91 3 190 0 43 0 56 0.99 CCTTCT chr1 25199241 25199280 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 25199659 25199701 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 25199700 25199728 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 25199795 25199847 trf 2 26.0 2 92 0 77 3 1 46 48 1.31 TG chr1 25202609 25202651 trf 8 5.1 8 82 11 50 78 21 0 0 0.75 CAAAAAAA chr1 25205776 25205847 trf 4 17.8 4 100 0 142 0 50 0 49 1.00 CCTT chr1 25206901 25206951 trf 2 25.0 2 91 0 64 50 42 8 0 1.32 CA chr1 25207903 25207949 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 25210126 25210167 trf 7 6.0 7 86 11 50 0 2 14 82 0.76 GTTTTTT chr1 25216840 25216913 trf 2 36.5 2 100 0 146 50 0 49 0 1.00 AG chr1 25221962 25222009 trf 2 23.5 2 95 0 85 48 0 2 48 1.13 AT chr1 25222008 25222047 trf 2 19.5 2 94 0 69 51 46 0 2 1.14 AC chr1 25232793 25232845 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 25242163 25242196 trf 6 5.7 6 89 3 50 72 24 3 0 0.98 AAAACC chr1 25251014 25251049 trf 2 17.5 2 93 0 61 51 45 2 0 1.16 AC chr1 25252836 25252911 trf 4 18.8 4 94 0 132 74 0 25 0 0.82 AGAA chr1 25252900 25252955 trf 2 28.5 2 89 7 87 52 0 47 0 1.00 AG chr1 25256303 25256341 trf 4 9.5 4 94 0 67 50 23 23 2 1.62 AAGC chr1 25258013 25258071 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 25260080 25260204 trf 4 30.8 4 78 1 68 27 1 22 48 1.60 TATG chr1 25260090 25260129 trf 12 3.2 12 100 0 78 15 0 33 51 1.44 TGTGTGTATGTA chr1 25260094 25260254 trf 8 19.9 8 80 1 86 36 2 13 47 1.57 TGTATATA chr1 25260128 25260254 trf 2 63.5 2 80 1 101 41 3 8 46 1.50 TA chr1 25260253 25260282 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 25266717 25266765 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 25266764 25266823 trf 2 29.5 2 92 0 100 3 0 45 50 1.18 TG chr1 25272850 25273070 trf 6 36.7 6 88 0 179 53 0 45 1 1.12 GAAGAA chr1 25272850 25273070 trf 9 24.4 9 81 0 179 53 0 45 1 1.12 GAAGAAGAA chr1 25276350 25276421 trf 4 17.8 4 100 0 142 0 25 0 74 0.82 TCTT chr1 25276422 25276486 trf 2 32.0 2 90 0 101 0 45 3 51 1.17 TC chr1 25282077 25282103 trf 4 6.5 4 100 0 52 23 0 0 76 0.78 TTTA chr1 25283525 25283560 trf 3 11.7 3 100 0 70 31 0 0 68 0.90 TTA chr1 25288395 25288456 trf 10 6.1 10 88 7 70 45 47 0 6 1.28 ACACTCACAC chr1 25288404 25288468 trf 6 10.7 6 91 0 92 48 45 1 4 1.32 CACACA chr1 25288411 25288462 trf 10 5.6 9 88 9 61 50 45 0 3 1.20 ACACACACA chr1 25290245 25290300 trf 12 4.6 12 90 0 74 49 5 1 43 1.36 ATATATACATAT chr1 25290254 25290304 trf 2 25.0 2 91 0 82 50 4 0 46 1.20 TA chr1 25291586 25291652 trf 4 16.5 4 100 0 132 50 0 50 0 1.00 AGGA chr1 25296232 25296268 trf 2 18.0 2 94 0 63 2 0 47 50 1.15 TG chr1 25296342 25296431 trf 4 22.5 4 97 2 171 0 50 0 49 1.00 CCTT chr1 25296428 25296482 trf 4 13.5 4 100 0 108 0 74 0 25 0.83 TCCC chr1 25299871 25299917 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 25300866 25300898 trf 4 8.0 4 100 0 64 75 0 0 25 0.81 AATA chr1 25306557 25306595 trf 4 9.2 4 91 2 58 50 23 2 23 1.62 AATC chr1 25313805 25313840 trf 2 17.5 2 93 0 61 2 0 45 51 1.16 TG chr1 25314694 25314751 trf 8 6.9 8 81 4 51 1 33 15 49 1.55 TCTCTCTG chr1 25315599 25315646 trf 2 23.5 2 84 0 58 6 2 44 46 1.40 TG chr1 25315787 25315832 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 25316660 25316686 trf 4 6.5 4 100 0 52 73 26 0 0 0.84 CAAA chr1 25316743 25316775 trf 12 2.7 12 90 0 55 59 0 28 12 1.34 GAAGGATAAAAA chr1 25320657 25320706 trf 2 24.0 2 83 4 62 44 4 4 46 1.41 AT chr1 25320705 25320734 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 25325431 25325477 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 25325800 25325852 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 25329107 25329132 trf 6 4.2 6 100 0 50 84 16 0 0 0.63 AAAAAC chr1 25333530 25333555 trf 12 2.1 12 100 0 50 28 8 16 48 1.74 ATTAATCTGTTG chr1 25335863 25335909 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 25339554 25339630 trf 2 38.0 2 94 0 125 0 51 1 47 1.09 CT chr1 25339665 25339709 trf 12 3.5 12 79 11 52 15 0 47 36 1.46 TGTGTGAGAGTG chr1 25340914 25340982 trf 10 6.8 10 89 0 64 41 33 7 17 1.77 ACAACTGATC chr1 25341087 25341197 trf 2 55.0 2 92 3 186 49 48 0 2 1.15 CA chr1 25341196 25341223 trf 2 13.5 2 100 0 54 51 0 48 0 1.00 AG chr1 25357329 25357416 trf 6 14.3 6 82 7 68 35 47 13 3 1.60 AGCACC chr1 25359980 25360017 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 25365710 25365830 trf 2 62.0 2 71 6 86 41 5 48 4 1.46 GA chr1 25371377 25371420 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 25373515 25373546 trf 2 15.5 2 93 0 53 48 48 0 3 1.17 CA chr1 25373792 25373824 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 25373823 25373850 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 25376147 25376298 trf 6 25.2 6 90 5 180 21 28 0 49 1.55 TCTATC chr1 25376301 25376354 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 25379487 25379530 trf 4 10.8 4 100 0 86 23 0 0 76 0.78 TTTA chr1 25381241 25381266 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 25382409 25382435 trf 4 6.5 4 100 0 52 53 46 0 0 1.00 AACC chr1 25382561 25382606 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 25386971 25387021 trf 2 25.0 2 95 0 91 48 0 2 50 1.12 AT chr1 25398638 25398676 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 25400789 25400840 trf 2 25.5 2 95 0 93 50 47 0 1 1.12 AC chr1 25402332 25402376 trf 4 10.8 4 95 4 79 27 22 0 50 1.50 TATC chr1 25410240 25410307 trf 6 11.3 6 87 3 100 79 0 20 0 0.74 GAAAAA chr1 25412423 25412454 trf 2 15.5 2 93 0 53 51 0 0 48 1.00 TA chr1 25420044 25420078 trf 4 8.5 4 100 0 68 76 23 0 0 0.79 AAAC chr1 25422557 25422604 trf 2 23.5 2 95 0 85 2 0 46 51 1.13 TG chr1 25423328 25423364 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 25436074 25436128 trf 4 13.5 4 100 0 108 0 25 0 74 0.83 CTTT chr1 25436125 25436166 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 25436771 25436818 trf 6 7.7 6 95 4 85 85 14 0 0 0.61 AAAAAC chr1 25437493 25437662 trf 5 33.4 5 96 1 311 0 38 0 61 0.96 TTTCC chr1 25437662 25437690 trf 4 7.0 4 100 0 56 0 75 0 25 0.81 CCTC chr1 25441327 25441367 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 AG chr1 25441365 25441494 trf 4 32.5 4 94 1 134 58 0 40 0 1.03 AGGA chr1 25441416 25441562 trf 4 36.8 4 97 1 222 70 0 29 0 0.87 AAGA chr1 25449580 25449611 trf 11 2.9 11 95 4 55 0 0 16 83 0.64 TTTTTGTTTTG chr1 25449882 25449948 trf 2 33.0 2 96 0 114 46 50 0 3 1.16 CA chr1 25453138 25453170 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 25454438 25454465 trf 4 6.8 4 100 0 54 74 25 0 0 0.83 CAAA chr1 25464656 25464692 trf 3 12.0 3 100 0 72 66 33 0 0 0.92 AAC chr1 25465793 25465890 trf 12 8.1 12 96 0 113 0 59 0 40 0.97 CTTCCTTCCCTC chr1 25465793 25465858 trf 4 16.2 4 96 0 121 0 52 0 47 1.00 CTTC chr1 25465795 25465894 trf 8 12.4 8 97 0 108 0 60 0 39 0.97 TCCTTCCC chr1 25465847 25465898 trf 4 12.8 4 95 0 93 0 72 0 27 0.85 TCCC chr1 25466946 25466984 trf 5 7.6 5 100 0 76 63 36 0 0 0.95 AAACC chr1 25466950 25467022 trf 4 16.8 4 92 4 74 70 29 0 0 0.87 CAAA chr1 25467327 25467490 trf 5 32.6 5 94 2 211 0 26 20 53 1.46 TTGTC chr1 25468254 25468460 trf 6 34.0 6 81 12 127 31 0 67 0 0.98 GGAGAG chr1 25468255 25468318 trf 2 31.5 2 93 0 108 46 0 53 0 1.00 GA chr1 25468301 25468456 trf 12 12.7 12 80 9 152 25 0 72 0 0.93 GAGAGGGGGAGG chr1 25471537 25471574 trf 2 18.5 2 100 0 74 48 0 0 51 1.00 TA chr1 25471668 25471755 trf 2 43.5 2 88 8 133 50 45 2 1 1.21 AC chr1 25474432 25474479 trf 2 23.5 2 95 0 85 53 46 0 0 1.00 AC chr1 25474808 25474856 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 25478198 25478224 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 25478321 25478354 trf 8 4.2 8 96 3 59 90 0 9 0 0.44 AAAAAAGA chr1 25478363 25478457 trf 2 48.0 2 85 4 129 47 0 52 0 1.00 AG chr1 25478455 25478521 trf 4 16.5 4 100 0 132 50 0 50 0 1.00 AGGA chr1 25480632 25480662 trf 2 15.0 2 92 0 51 3 0 46 50 1.18 TG chr1 25480672 25480708 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 25489839 25489871 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 25489998 25490043 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 25500007 25500067 trf 2 30.0 2 89 0 93 5 0 45 50 1.23 GT chr1 25500144 25500172 trf 12 2.3 12 100 0 56 0 60 0 39 0.97 TCCCTCTCCTTC chr1 25505739 25505793 trf 4 13.5 4 100 0 108 25 24 0 50 1.50 TATC chr1 25507886 25507957 trf 4 18.0 4 91 2 117 25 25 0 49 1.51 CTAT chr1 25511161 25511197 trf 2 18.0 2 94 0 63 2 0 47 50 1.15 GT chr1 25513304 25513341 trf 2 18.5 2 94 0 65 2 0 48 48 1.15 GT chr1 25531298 25531350 trf 10 5.0 10 81 6 59 84 1 1 11 0.78 AAAAAAAAAT chr1 25531759 25531816 trf 2 28.5 2 89 0 87 47 47 3 1 1.29 AC chr1 25536754 25536805 trf 2 25.5 2 95 0 93 49 49 0 1 1.12 AC chr1 25543353 25543394 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 25545780 25545818 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 25546505 25546531 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 25548954 25548985 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 25549264 25549302 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 25549688 25549775 trf 2 43.5 2 83 0 75 41 3 9 45 1.53 AT chr1 25562420 25562504 trf 5 16.8 5 83 11 86 1 1 19 78 0.88 TTTTG chr1 25562436 25562504 trf 12 5.2 13 81 15 70 0 0 19 80 0.70 TTGTTGTTTTGTT chr1 25564498 25564534 trf 10 3.8 9 89 10 54 33 0 2 63 1.08 TATAATTTT chr1 25566401 25566444 trf 3 14.3 3 100 0 86 67 32 0 0 0.91 AAC chr1 25568014 25568058 trf 2 22.0 2 95 0 79 0 2 50 47 1.13 GT chr1 25569564 25569613 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 25573927 25573968 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 25575897 25575926 trf 5 6.0 5 92 8 51 62 0 0 37 0.96 ATATA chr1 25579887 25579950 trf 2 32.0 2 83 3 74 0 7 50 41 1.31 TG chr1 25587186 25587236 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 25587347 25587373 trf 4 6.5 4 100 0 52 50 0 0 50 1.00 ATTA chr1 25589859 25589888 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 25601475 25601520 trf 4 11.2 4 100 0 90 51 0 24 24 1.49 ATAG chr1 25611380 25611438 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 AG chr1 25611452 25611521 trf 4 17.2 4 100 0 138 50 0 49 0 1.00 AGGA chr1 25616317 25616359 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 GA chr1 25620279 25620323 trf 2 22.0 2 85 0 61 6 0 43 50 1.29 GT chr1 25624847 25624895 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 CA chr1 25628696 25628744 trf 7 6.9 7 80 15 55 83 16 0 0 0.65 AAAAAAC chr1 25630094 25630141 trf 3 15.7 3 80 8 51 42 0 57 0 0.98 GAG chr1 25630140 25630165 trf 8 3.1 8 100 0 50 64 0 24 12 1.27 AAGATAGA chr1 25631336 25631396 trf 6 10.0 6 92 0 93 51 46 0 1 1.10 CACACA chr1 25631336 25631396 trf 4 15.0 4 89 0 93 51 46 0 1 1.10 CACA chr1 25638848 25638882 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 CA chr1 25643201 25643228 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 25649981 25650037 trf 12 4.9 12 72 12 55 57 3 3 35 1.34 TAAATTAAATAG chr1 25652761 25652817 trf 3 19.7 3 81 7 64 69 26 0 3 1.04 AAC chr1 25653169 25653209 trf 2 20.0 2 84 0 53 2 42 5 50 1.37 CT chr1 25653454 25653525 trf 12 5.9 12 71 11 56 4 60 2 32 1.30 CCTCCCTTCCTC chr1 25655018 25655046 trf 4 7.0 4 100 0 56 50 25 0 25 1.50 ATCA chr1 25658488 25658538 trf 9 5.6 9 87 0 73 2 56 0 42 1.11 TCCTCTTCC chr1 25658982 25659020 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 25660287 25660326 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 25670314 25670362 trf 7 7.0 7 95 4 89 58 12 0 29 1.35 CATAATA chr1 25670322 25670371 trf 10 5.2 10 77 22 61 59 10 0 30 1.31 ATAATACATA chr1 25672138 25672214 trf 12 6.4 12 82 8 93 0 69 0 30 0.88 TCCTCCTCCCCC chr1 25672138 25672214 trf 3 25.7 3 80 7 84 0 69 0 30 0.88 TCC chr1 25674316 25674345 trf 6 5.0 6 91 8 51 86 0 13 0 0.58 AAAAAG chr1 25688692 25688750 trf 2 29.0 2 86 6 73 48 5 1 44 1.35 AT chr1 25688770 25688802 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 25689549 25689574 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TTTG chr1 25694128 25694202 trf 1 74.0 1 94 0 130 97 0 2 0 0.18 A chr1 25702899 25702953 trf 4 13.5 4 96 0 99 50 24 0 25 1.50 CATA chr1 25702910 25702981 trf 8 8.6 8 87 6 70 52 30 0 16 1.45 ACATACAC chr1 25704532 25704560 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 25705744 25705784 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 25706236 25706361 trf 6 20.8 6 80 6 128 1 37 9 51 1.45 TCTCTG chr1 25707072 25707108 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 25709488 25709550 trf 4 15.5 4 100 0 124 0 50 0 50 1.00 CTTC chr1 25709547 25709587 trf 4 10.0 4 100 0 80 0 75 0 25 0.81 CCTC chr1 25710975 25711118 trf 2 72.0 2 87 6 202 46 0 4 48 1.26 AT chr1 25712096 25712144 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 25713037 25713064 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 25715648 25715694 trf 4 12.0 4 82 17 62 78 21 0 0 0.76 CAAA chr1 25717540 25717574 trf 10 3.4 10 100 0 68 38 20 0 41 1.53 TATCAATATC chr1 25720836 25720867 trf 5 6.2 5 100 0 62 0 0 19 80 0.71 TGTTT chr1 25722171 25722243 trf 2 37.0 2 79 10 78 44 2 2 50 1.31 AT chr1 25722242 25722285 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 25724028 25724087 trf 2 30.5 2 76 6 59 49 5 45 0 1.24 AG chr1 25725022 25725072 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 CT chr1 25725071 25725103 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 25726050 25726103 trf 3 17.7 3 96 0 97 32 0 1 66 1.03 TAT chr1 25726667 25726718 trf 2 25.5 2 91 0 84 50 45 0 3 1.20 AC chr1 25727375 25727420 trf 2 22.5 2 90 0 72 46 0 4 48 1.22 TA chr1 25728466 25728536 trf 2 35.0 2 82 0 77 42 2 7 47 1.45 AT chr1 25728472 25728552 trf 6 13.3 6 74 10 56 41 2 10 46 1.51 ATATGT chr1 25733437 25733534 trf 4 25.8 4 79 15 66 0 0 21 78 0.75 TTTG chr1 25733489 25733557 trf 1 68.0 1 82 0 73 0 0 10 89 0.48 T chr1 25735221 25735288 trf 10 6.7 10 96 0 107 50 41 2 4 1.37 ACACACATAC chr1 25735221 25735292 trf 2 35.5 2 85 0 97 50 42 2 4 1.36 AC chr1 25735291 25735327 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 AG chr1 25748446 25748503 trf 2 29.0 2 85 3 80 49 3 1 45 1.29 TA chr1 25753794 25753830 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 25754118 25754167 trf 2 24.5 2 95 0 89 2 0 46 51 1.12 TG chr1 25756393 25756503 trf 4 27.5 4 94 3 114 40 0 60 0 0.97 GGAA chr1 25757145 25757205 trf 3 20.0 3 85 0 84 65 28 1 5 1.23 CAA chr1 25764992 25765063 trf 2 35.5 2 94 0 124 0 2 46 50 1.16 TG chr1 25767357 25767396 trf 7 5.6 7 84 0 51 46 0 2 51 1.14 ATATTAT chr1 25767891 25767916 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 25767913 25767943 trf 10 3.0 10 95 0 51 50 6 0 43 1.28 ACATATATAT chr1 25768605 25768679 trf 4 18.8 4 97 2 141 50 0 25 24 1.50 AGAT chr1 25774334 25774399 trf 2 32.5 2 96 0 121 50 47 1 0 1.10 AC chr1 25781784 25781823 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 25781899 25781931 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 25783506 25783543 trf 4 9.2 4 100 0 74 51 24 24 0 1.49 ACAG chr1 25794473 25794519 trf 10 4.5 10 81 5 56 63 0 34 2 1.07 AGAGAAAAAG chr1 25804062 25804099 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TTAT chr1 25808688 25808955 trf 9 29.6 9 78 14 176 1 39 0 59 1.05 CTTCTCCTT chr1 25808688 25808955 trf 6 44.3 6 81 8 274 1 39 0 59 1.05 CTTCTT chr1 25809444 25809473 trf 10 2.7 11 94 5 51 0 3 17 79 0.87 TTTGTTTTGCT chr1 25809448 25809492 trf 11 4.0 11 85 8 54 0 2 11 86 0.66 TTTTGTTTTTT chr1 25814091 25814128 trf 2 18.5 2 88 0 56 51 43 0 5 1.24 AC chr1 25816371 25816398 trf 4 6.8 4 100 0 54 74 0 0 25 0.83 ATAA chr1 25817533 25817577 trf 2 22.0 2 95 0 79 47 50 0 2 1.13 CA chr1 25819185 25819222 trf 2 18.5 2 94 0 65 54 45 0 0 1.00 AC chr1 25820143 25820211 trf 2 34.0 2 93 0 118 2 0 47 50 1.16 TG chr1 25822588 25822625 trf 4 9.2 4 100 0 74 24 0 24 51 1.49 TATG chr1 25822894 25822933 trf 4 9.8 4 94 0 60 76 0 5 17 0.96 AAAT chr1 25828502 25828535 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 25830322 25830419 trf 4 24.0 4 77 6 88 9 22 67 1 1.26 GGCG chr1 25833311 25833358 trf 4 11.8 4 82 13 53 19 4 0 76 0.95 TTTA chr1 25835157 25835200 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 25835558 25835592 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 25842514 25842629 trf 4 29.0 4 94 1 205 75 0 23 0 0.85 AAGA chr1 25842627 25842670 trf 4 11.0 4 85 5 61 27 0 72 0 0.85 GAGG chr1 25842632 25842729 trf 12 8.4 12 86 8 103 41 0 58 0 0.98 GGGAGGAAGGAA chr1 25842667 25842726 trf 4 14.8 4 100 0 118 49 0 50 0 1.00 AGGA chr1 25843860 25843900 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 AG chr1 25843897 25843945 trf 4 12.0 4 100 0 96 25 0 75 0 0.81 GAGG chr1 25843942 25844115 trf 4 43.0 4 84 5 170 50 0 49 0 1.00 AGGA chr1 25844439 25844481 trf 5 8.4 5 100 0 84 80 19 0 0 0.70 AAACA chr1 25853684 25853726 trf 12 3.6 12 80 6 50 45 7 2 45 1.44 TATTTTAAACAA chr1 25854198 25854247 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 25854250 25854296 trf 4 11.5 4 90 0 74 28 0 71 0 0.86 GGAG chr1 25854622 25854647 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 25862457 25862523 trf 6 10.2 6 75 18 53 75 21 3 0 0.93 CAAAAA chr1 25864411 25864440 trf 7 4.1 7 100 0 58 0 0 13 86 0.58 TTTGTTT chr1 25867019 25867139 trf 4 30.2 4 88 5 145 70 0 29 0 0.87 AGAA chr1 25867721 25867776 trf 4 13.8 4 92 0 92 25 0 1 72 0.94 TTTA chr1 25871040 25871088 trf 10 4.6 10 85 10 60 85 14 0 0 0.60 AAAAAACAAA chr1 25871042 25871076 trf 5 6.8 5 100 0 68 82 17 0 0 0.67 AAAAC chr1 25873732 25873781 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 25873803 25873882 trf 4 19.8 4 97 0 149 0 48 1 50 1.08 CTTC chr1 25873882 25873927 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 25873931 25873956 trf 12 2.1 12 100 0 50 0 0 8 92 0.40 TTTTTTTTTTTG chr1 25875834 25875878 trf 5 8.8 5 100 0 88 18 0 0 81 0.68 TTTTA chr1 25879915 25879948 trf 3 11.3 3 93 6 59 63 0 0 36 0.95 TAA chr1 25894448 25894494 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 TG chr1 25902026 25902075 trf 2 24.5 2 91 0 80 2 2 44 51 1.24 TG chr1 25905165 25905199 trf 5 6.6 5 93 3 50 67 32 0 0 0.91 AAACC chr1 25906072 25906233 trf 4 40.8 4 93 2 200 0 32 0 67 0.91 TTTC chr1 25919342 25919369 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 25924236 25924328 trf 6 15.3 6 89 4 62 38 52 3 6 1.44 CATCAC chr1 25924251 25924331 trf 3 26.7 3 79 0 88 38 56 1 3 1.25 CAC chr1 25926377 25926415 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 25927420 25927473 trf 2 26.5 2 100 0 106 49 50 0 0 1.00 CA chr1 25932571 25932642 trf 2 35.0 2 94 2 124 47 1 0 50 1.09 AT chr1 25933430 25933536 trf 9 11.3 9 70 23 69 60 0 39 0 0.97 AAGGAAAGA chr1 25933430 25933500 trf 5 14.2 5 75 21 60 62 0 37 0 0.95 AAGGA chr1 25933461 25933538 trf 4 17.8 4 74 12 55 62 0 37 0 0.96 GAAA chr1 25936040 25936149 trf 4 25.2 4 88 8 128 69 0 30 0 0.88 GAAA chr1 25936042 25936186 trf 8 17.2 8 75 15 89 65 0 34 0 0.93 AAGGAAAG chr1 25939844 25939877 trf 3 11.0 3 100 0 66 0 0 33 66 0.92 TTG chr1 25940017 25940059 trf 4 10.5 4 100 0 84 23 0 26 50 1.50 TGTA chr1 25940999 25941042 trf 2 21.5 2 95 0 77 2 0 46 51 1.13 TG chr1 25943920 25944003 trf 4 20.8 4 94 0 139 22 22 2 51 1.59 TATC chr1 25944421 25944476 trf 4 13.8 4 80 0 65 3 1 18 76 1.02 TTGT chr1 25946388 25946447 trf 5 11.8 5 100 0 118 0 20 0 79 0.73 CTTTT chr1 25951574 25951653 trf 1 79.0 1 82 0 77 88 11 0 0 0.51 A chr1 25956395 25956552 trf 5 31.2 5 98 1 296 0 59 0 40 0.98 TCCTC chr1 25959299 25959334 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 25963050 25963131 trf 10 7.7 10 80 12 65 2 1 11 85 0.76 TTTTTTTTGT chr1 25963056 25963128 trf 6 12.3 6 81 14 80 2 0 12 84 0.72 TTGTTT chr1 25963059 25963131 trf 1 72.0 1 71 0 54 2 0 11 86 0.68 T chr1 25963060 25963132 trf 5 14.0 5 80 13 67 2 0 12 84 0.72 TTTTG chr1 25970714 25970742 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 25973466 25973532 trf 3 22.0 3 96 0 123 31 0 1 66 1.01 TTA chr1 25973994 25974019 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 25977108 25977152 trf 12 3.8 12 81 3 54 40 0 2 56 1.11 ATATATTATAAT chr1 25980297 25980375 trf 2 39.0 2 100 0 156 0 50 0 50 1.00 TC chr1 25980937 25980993 trf 2 28.0 2 85 0 76 50 44 1 3 1.29 CA chr1 25981286 25981348 trf 12 5.5 12 69 21 53 46 3 0 50 1.17 TATATATAATTA chr1 25983630 25983969 trf 4 85.2 4 85 9 273 0 33 1 65 1.03 TCTT chr1 25988989 25989014 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 25991373 25991410 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 25994482 25994516 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 TA chr1 25994629 25995406 trf 8 95.9 8 76 7 235 46 21 3 28 1.68 ATATATAC chr1 25994697 25994768 trf 12 5.9 12 83 0 52 49 25 1 23 1.59 ATACATACACAC chr1 25994707 25994790 trf 12 7.2 12 73 10 75 48 20 1 30 1.57 ACACACATATAT chr1 25994709 25994774 trf 10 6.1 10 72 13 58 49 21 1 27 1.59 ACACATATAT chr1 25995268 25995388 trf 10 12.9 10 70 20 64 52 19 0 28 1.46 ACACATATAC chr1 25996081 25996126 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 25998053 25998100 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 25998099 25998161 trf 12 5.1 13 84 5 69 48 0 1 50 1.10 TATATATATAATA chr1 25998099 25998143 trf 2 22.0 2 95 0 79 47 0 2 50 1.13 TA chr1 26000009 26000057 trf 5 10.2 5 86 13 59 0 0 20 79 0.74 GTTTT chr1 26014468 26014527 trf 2 29.5 2 96 0 109 1 0 49 49 1.11 GT chr1 26017186 26017295 trf 6 17.8 6 93 2 119 75 0 22 0 0.92 AAAAAG chr1 26020942 26020987 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 26024886 26024945 trf 2 29.5 2 100 0 118 50 0 0 49 1.00 AT chr1 26025877 26026156 trf 10 29.3 10 79 10 264 48 6 44 0 1.31 AGAGAGAGAG chr1 26026088 26026148 trf 5 12.0 5 100 0 120 40 0 60 0 0.97 GAGAG chr1 26030310 26030391 trf 4 20.2 4 97 0 135 53 0 46 0 1.00 GGAA chr1 26034078 26034122 trf 2 22.0 2 80 0 52 4 2 43 50 1.35 TG chr1 26034488 26034519 trf 8 3.9 8 100 0 62 51 9 38 0 1.35 AGAGAGAC chr1 26035443 26035484 trf 1 41.0 1 100 0 82 100 0 0 0 0.00 A chr1 26037370 26037423 trf 2 26.5 2 100 0 106 50 0 0 49 1.00 AT chr1 26044372 26044409 trf 5 7.8 5 93 6 60 81 18 0 0 0.70 AAAAC chr1 26048102 26048152 trf 2 25.5 2 91 4 84 0 52 0 48 1.00 TC chr1 26051371 26051434 trf 2 31.5 2 93 0 108 47 0 3 49 1.17 AT chr1 26051512 26051548 trf 2 18.0 2 88 0 54 0 2 47 50 1.15 TG chr1 26057517 26057656 trf 8 17.4 8 93 0 179 0 33 0 66 0.92 CTTTCTTT chr1 26066867 26066967 trf 1 100.0 1 71 0 74 86 10 3 1 0.74 A chr1 26066868 26066964 trf 7 13.9 7 84 14 94 85 10 3 1 0.76 AAAAAAC chr1 26068454 26068479 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 26074368 26074440 trf 2 36.5 2 88 2 110 45 1 2 50 1.25 TA chr1 26074421 26074464 trf 4 10.8 4 89 0 50 25 0 23 51 1.49 TATG chr1 26076024 26076050 trf 12 2.2 12 100 0 52 46 7 23 23 1.78 AATTCATAAGGG chr1 26079257 26079317 trf 3 19.7 3 96 3 111 66 0 33 0 0.92 GAA chr1 26079264 26079384 trf 6 19.5 6 92 5 69 50 0 50 0 1.00 GAAGAG chr1 26079315 26079383 trf 3 22.7 3 93 0 118 36 0 63 0 0.95 GAG chr1 26080097 26080208 trf 2 57.0 2 94 5 201 50 0 49 0 1.00 GA chr1 26082466 26082507 trf 8 5.1 8 88 8 57 0 0 14 85 0.60 TGTTTTTT chr1 26082468 26082511 trf 12 3.7 12 82 17 54 0 0 13 86 0.58 TTTGTTTGTTTT chr1 26083417 26083452 trf 2 17.5 2 93 0 61 2 0 45 51 1.16 TG chr1 26083457 26083518 trf 2 30.5 2 100 0 122 50 0 49 0 1.00 AG chr1 26083734 26083841 trf 4 26.8 4 88 0 151 0 43 5 50 1.25 CTCT chr1 26085795 26085850 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 26089222 26089260 trf 4 9.5 4 100 0 76 50 23 0 26 1.50 ATAC chr1 26089264 26089309 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 26090050 26090078 trf 11 2.5 11 100 0 56 92 0 7 0 0.37 AAAAAAAAAGA chr1 26091340 26091394 trf 8 6.6 8 79 12 56 0 3 18 77 0.91 GTTTTTTT chr1 26094853 26095082 trf 3 76.7 3 93 2 291 0 40 0 59 0.97 TTC chr1 26100232 26100262 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 CT chr1 26100264 26100351 trf 2 44.0 2 79 6 88 48 6 1 43 1.37 AT chr1 26100350 26100375 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 26100508 26100553 trf 2 22.5 2 95 0 81 48 2 0 48 1.13 TA chr1 26102034 26102067 trf 12 3.0 11 87 12 50 0 3 15 81 0.80 TTTTGTTTTGT chr1 26102617 26102671 trf 2 27.0 2 96 0 99 50 1 0 48 1.11 AT chr1 26108077 26108126 trf 4 12.2 4 95 0 62 67 0 8 24 1.18 AAAT chr1 26110961 26111005 trf 4 11.2 4 85 4 63 79 20 0 0 0.73 CAAA chr1 26110962 26111005 trf 12 3.6 12 93 0 77 81 18 0 0 0.69 AAAAAACAAACA chr1 26111865 26111908 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 26112001 26112030 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 26112562 26112589 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 26112686 26112741 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 26114250 26114313 trf 10 6.3 10 88 0 90 50 46 1 1 1.20 CACACACACA chr1 26114250 26114313 trf 6 10.5 6 89 0 90 50 46 1 1 1.20 CACACA chr1 26114250 26114313 trf 4 15.8 4 86 0 90 50 46 1 1 1.20 CACA chr1 26123100 26123139 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 26123958 26124066 trf 12 9.3 12 80 7 98 50 6 41 1 1.39 GAGAGAGAGACA chr1 26123958 26124048 trf 2 45.0 2 81 4 101 50 5 43 1 1.33 GA chr1 26123973 26124099 trf 6 20.8 6 76 8 76 46 10 38 3 1.57 AGAGAC chr1 26125429 26125494 trf 8 7.9 8 77 13 60 80 18 1 0 0.80 AAAAAAAC chr1 26125433 26125490 trf 4 14.8 4 75 14 57 77 21 1 0 0.86 AAAC chr1 26131186 26131298 trf 8 14.0 8 100 0 224 37 0 62 0 0.95 GGAGGAAG chr1 26132287 26132332 trf 2 22.5 2 95 0 81 53 46 0 0 1.00 AC chr1 26133195 26133230 trf 12 2.8 13 91 8 56 45 8 5 40 1.58 TACATGTATATAA chr1 26140505 26140576 trf 2 36.5 2 83 5 92 47 4 0 47 1.21 AT chr1 26142417 26142467 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 26145503 26145587 trf 2 43.0 2 79 9 84 46 47 1 4 1.31 AC chr1 26145884 26145949 trf 8 8.6 7 79 17 60 80 20 0 0 0.72 AAAAACA chr1 26145894 26145947 trf 4 12.8 4 86 9 63 79 20 0 0 0.74 AAAC chr1 26149725 26149760 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 26154250 26154286 trf 6 5.8 6 90 3 54 80 19 0 0 0.71 AAAAAC chr1 26166694 26166744 trf 5 9.8 5 93 2 82 0 0 20 80 0.72 TTTTG chr1 26167131 26167169 trf 1 38.0 1 100 0 76 0 0 0 100 0.00 T chr1 26171218 26171284 trf 4 16.5 4 96 0 114 0 46 0 53 1.00 CTTC chr1 26184768 26184822 trf 6 8.8 6 79 18 58 87 0 12 0 0.56 GAAAAA chr1 26184769 26184822 trf 1 53.0 1 76 0 52 88 0 11 0 0.51 A chr1 26184771 26184817 trf 8 5.6 8 89 5 74 89 0 10 0 0.50 AAAAAAAG chr1 26184980 26185039 trf 2 29.5 2 91 0 91 52 44 3 0 1.17 AC chr1 26190050 26190430 trf 3 123.3 3 91 5 481 60 0 38 0 0.99 AGA chr1 26191733 26191804 trf 4 18.2 4 94 5 128 49 0 25 25 1.51 AGAT chr1 26191771 26191871 trf 6 16.3 6 92 7 150 49 0 19 32 1.49 ATAGAT chr1 26193384 26193414 trf 2 15.0 2 92 0 51 3 0 46 50 1.18 TG chr1 26193973 26194021 trf 3 16.0 3 91 0 78 35 62 0 2 1.07 CAC chr1 26196438 26196516 trf 2 40.0 2 82 5 79 48 2 2 46 1.29 AT chr1 26199724 26199787 trf 2 32.5 2 77 6 67 1 6 44 47 1.38 TG chr1 26200978 26201019 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 26201018 26201065 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 26202430 26202567 trf 10 13.4 10 78 14 59 44 10 44 0 1.43 GAGAAGAGAG chr1 26202458 26202567 trf 5 21.8 5 91 0 137 43 12 44 0 1.42 GAGAC chr1 26206302 26206343 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 26206342 26206377 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 26212355 26212401 trf 7 6.9 7 85 14 62 0 0 13 86 0.56 TTTTTTG chr1 26212365 26212400 trf 6 5.8 6 87 12 54 0 0 14 85 0.59 TTTTTG chr1 26214964 26214999 trf 10 3.5 10 92 0 52 51 0 8 40 1.33 ATATAGATAT chr1 26214968 26215001 trf 12 2.8 12 95 0 57 51 0 9 39 1.34 ATATATATAGAG chr1 26217237 26217302 trf 2 32.5 2 87 6 96 4 0 44 50 1.22 TG chr1 26221231 26221305 trf 6 12.3 6 100 0 148 32 0 16 51 1.45 TTATAG chr1 26226745 26226780 trf 8 4.4 8 88 0 52 54 31 11 2 1.51 ACACAGAC chr1 26228966 26229017 trf 4 12.8 4 95 0 93 50 21 0 27 1.48 ATAC chr1 26233729 26233838 trf 8 13.9 8 68 16 59 21 29 2 46 1.65 CTATATCT chr1 26239390 26239504 trf 2 57.0 2 92 0 192 50 46 3 0 1.18 AC chr1 26239848 26239880 trf 11 2.8 11 95 4 55 9 0 0 90 0.45 TTTTTTTTTAT chr1 26246291 26246390 trf 2 49.5 2 83 4 128 49 7 0 43 1.29 AT chr1 26246525 26246694 trf 6 28.2 6 100 0 338 0 50 16 33 1.46 CTGCCT chr1 26247354 26247412 trf 2 29.5 2 92 3 100 51 46 0 1 1.11 AC chr1 26247862 26247903 trf 2 20.5 2 94 0 73 53 0 46 0 1.00 AG chr1 26247933 26248002 trf 4 17.0 4 93 3 120 72 1 26 0 0.93 GAAA chr1 26250602 26250645 trf 8 5.4 8 94 5 70 0 0 9 90 0.45 TTTGTTTT chr1 26250602 26250649 trf 9 5.4 9 89 5 71 0 0 10 89 0.49 TTTGTTTTT chr1 26250606 26250648 trf 1 42.0 1 85 0 57 0 0 7 92 0.37 T chr1 26250778 26250814 trf 12 2.8 13 91 8 65 0 0 22 77 0.76 TTGTTTTGTTTGT chr1 26250782 26250814 trf 4 7.8 4 93 6 55 0 0 21 78 0.76 TTTG chr1 26263675 26263723 trf 6 8.2 6 86 13 73 83 16 0 0 0.65 ACAAAA chr1 26271192 26271239 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 26271705 26271766 trf 12 4.9 12 76 11 61 0 1 14 83 0.72 TTTGTTTTTTTT chr1 26271713 26271764 trf 6 8.5 6 83 12 61 0 0 15 84 0.63 TTTGTT chr1 26271720 26271763 trf 5 8.8 5 85 10 54 0 0 16 83 0.64 TTTTG chr1 26272007 26272041 trf 12 2.6 13 86 13 52 55 44 0 0 0.99 AACCAAACCAACC chr1 26278835 26278865 trf 4 7.5 4 100 0 60 76 23 0 0 0.78 AACA chr1 26279016 26279067 trf 3 17.7 3 88 8 79 66 31 1 0 1.03 AAC chr1 26279281 26279357 trf 6 12.8 6 78 13 50 0 1 23 75 0.89 TTTTTG chr1 26279284 26279337 trf 3 18.7 3 76 18 51 0 0 30 69 0.88 TTG chr1 26285406 26285444 trf 5 7.6 5 100 0 76 81 0 0 18 0.69 AAATA chr1 26286725 26286807 trf 4 20.5 4 94 0 146 1 48 0 50 1.08 CTTC chr1 26286804 26286866 trf 4 15.5 4 96 0 115 1 74 0 24 0.91 CCTC chr1 26286867 26286911 trf 10 4.0 11 80 11 54 2 40 0 56 1.11 CTCTCTCTCTT chr1 26286870 26286921 trf 8 6.2 8 79 4 57 1 37 0 60 1.08 TCTCTCTT chr1 26297230 26297270 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 AT chr1 26297769 26297826 trf 2 29.0 2 96 3 107 0 50 0 49 1.00 CT chr1 26299883 26299954 trf 5 14.4 5 94 2 108 66 0 33 0 0.92 AAGAG chr1 26302035 26302085 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 26302776 26302867 trf 2 45.5 2 73 0 65 48 38 3 9 1.53 AC chr1 26303977 26304026 trf 2 24.5 2 100 0 98 48 0 0 51 1.00 TA chr1 26308309 26308337 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 26310291 26310324 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 26316750 26316818 trf 4 17.0 4 100 0 136 75 0 25 0 0.81 AGAA chr1 26316817 26316930 trf 4 28.2 4 96 0 100 38 0 61 0 1.03 AGAG chr1 26319214 26319244 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 26319854 26319915 trf 2 30.5 2 96 0 113 50 47 0 1 1.10 AC chr1 26325804 26325841 trf 2 18.5 2 94 0 65 0 0 45 54 1.00 TG chr1 26328292 26328388 trf 2 48.0 2 85 0 120 48 6 43 1 1.34 GA chr1 26329637 26329667 trf 12 2.5 12 88 0 51 0 0 20 80 0.72 GTTTTTTTGTTT chr1 26330294 26330328 trf 3 11.3 3 100 0 68 35 0 64 0 0.94 AGG chr1 26333507 26333572 trf 2 33.0 2 93 3 114 49 0 50 0 1.00 AG chr1 26336836 26336905 trf 2 35.5 2 88 5 106 47 49 1 1 1.19 AC chr1 26336904 26336951 trf 4 11.8 4 100 0 94 51 0 23 25 1.49 ATAG chr1 26338177 26338203 trf 4 6.5 4 100 0 52 73 0 0 26 0.84 ATAA chr1 26341401 26341432 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 26342982 26343019 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 26345989 26346054 trf 2 32.5 2 90 0 103 47 47 3 1 1.27 CA chr1 26355769 26355805 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 26359893 26359950 trf 4 14.5 4 96 3 107 26 24 0 49 1.51 ATCT chr1 26360361 26360410 trf 10 5.0 10 82 2 64 18 0 28 53 1.45 TGTGTGTATA chr1 26365265 26365319 trf 6 9.0 6 97 0 99 51 14 33 0 1.43 ACAGAG chr1 26367225 26367263 trf 2 19.0 2 88 0 58 47 47 0 5 1.24 AC chr1 26367750 26367795 trf 8 6.0 8 80 10 51 73 22 4 0 1.01 AAACAAAC chr1 26367756 26367795 trf 4 10.0 4 88 5 53 71 23 5 0 1.05 AAAC chr1 26372570 26372595 trf 12 2.1 12 100 0 50 8 0 76 16 1.02 GTGGGTGGGGGA chr1 26377252 26377297 trf 5 9.0 5 100 0 90 0 0 20 80 0.72 GTTTT chr1 26382701 26382753 trf 4 13.0 4 95 0 68 25 7 0 67 1.17 ATTT chr1 26385177 26385280 trf 3 34.7 3 96 1 190 0 31 0 68 0.89 TTC chr1 26385814 26385866 trf 9 5.7 9 72 4 50 44 0 53 1 1.11 GGAGGAGAA chr1 26393280 26393379 trf 3 33.7 3 88 8 150 65 0 34 0 0.93 AGA chr1 26397718 26397762 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 26397759 26397803 trf 3 15.0 3 95 4 81 31 68 0 0 0.90 CAC chr1 26400551 26400716 trf 6 27.5 6 82 0 177 46 4 47 1 1.31 GAGAGA chr1 26400551 26400716 trf 8 20.6 8 80 0 177 46 4 47 1 1.31 GAGAGAGA chr1 26400921 26400956 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 26402119 26402145 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TTTTG chr1 26403768 26403833 trf 4 16.0 4 93 3 112 24 24 0 50 1.49 TATC chr1 26410633 26410805 trf 6 28.7 6 99 0 290 0 62 0 37 0.95 CTCTCC chr1 26412773 26412832 trf 4 14.8 4 96 0 109 52 0 47 0 1.00 GAAG chr1 26412863 26412943 trf 10 7.4 10 68 15 52 50 15 33 1 1.52 GAGAGAGACA chr1 26412866 26412944 trf 6 13.0 6 69 10 52 50 16 32 1 1.54 AGAGAC chr1 26412988 26413019 trf 2 15.5 2 100 0 62 48 0 51 0 1.00 GA chr1 26414841 26414867 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 26421321 26421370 trf 2 24.5 2 100 0 98 51 0 0 48 1.00 AT chr1 26425972 26426050 trf 10 7.6 10 87 5 57 50 37 0 12 1.41 ACATATACAC chr1 26425978 26426025 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 26427903 26427965 trf 10 6.2 10 96 0 97 0 45 4 50 1.23 CTCTCTCTCT chr1 26427903 26427965 trf 6 10.3 6 91 0 97 0 45 4 50 1.23 CTCTCT chr1 26427903 26427965 trf 4 15.5 4 93 0 97 0 45 4 50 1.23 CTCT chr1 26428372 26428434 trf 1 62.0 1 78 0 61 1 0 9 88 0.58 T chr1 26428372 26428422 trf 7 6.9 7 86 8 73 0 0 10 90 0.47 TTTTTTG chr1 26435640 26435692 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 26438706 26438805 trf 4 24.2 4 79 13 96 4 47 0 48 1.20 TTCC chr1 26439239 26439299 trf 2 30.0 2 100 0 120 50 0 0 50 1.00 AT chr1 26439870 26440047 trf 2 89.0 2 75 14 127 45 3 3 46 1.40 TA chr1 26440300 26440327 trf 4 6.8 4 100 0 54 0 25 22 51 1.48 TCTG chr1 26440514 26440544 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 26454283 26454331 trf 2 24.0 2 95 0 87 2 50 0 47 1.12 CT chr1 26454477 26454864 trf 12 32.5 12 91 1 195 22 38 2 36 1.68 TCTATCCATCTA chr1 26454477 26454530 trf 4 13.5 4 80 4 63 24 33 0 41 1.55 TCTA chr1 26454495 26454666 trf 4 42.8 4 95 0 198 25 53 0 21 1.46 ATCC chr1 26454663 26454865 trf 4 51.0 4 95 2 291 19 25 4 49 1.68 ATCT chr1 26457151 26457245 trf 2 46.5 2 87 2 116 48 7 1 42 1.38 AT chr1 26458641 26458668 trf 8 3.4 8 100 0 54 25 40 11 22 1.87 ACCTCTGA chr1 26459066 26459204 trf 4 35.5 4 92 5 140 0 33 0 66 0.92 TTCT chr1 26464996 26465021 trf 6 4.2 6 100 0 50 84 16 0 0 0.63 AACAAA chr1 26466404 26466452 trf 12 3.8 12 79 15 60 45 0 52 2 1.12 GAGGAGAAAGAG chr1 26467602 26467648 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 26469363 26469419 trf 4 14.0 4 100 0 112 50 0 50 0 1.00 AAGG chr1 26469419 26469495 trf 2 38.0 2 91 0 125 51 2 46 0 1.15 GA chr1 26470451 26470492 trf 8 5.4 8 80 11 50 46 12 39 2 1.54 GAGCAAGA chr1 26475960 26476001 trf 8 5.4 8 80 11 50 46 12 39 2 1.54 GAGCAAGA chr1 26476879 26476936 trf 2 28.5 2 92 0 96 50 45 3 0 1.18 AC chr1 26478520 26478549 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 26480672 26480729 trf 10 5.9 10 79 8 64 3 10 36 49 1.55 TGTGTGTGTC chr1 26480747 26480786 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 26481895 26481925 trf 4 7.8 4 92 7 53 0 0 23 76 0.78 TTGT chr1 26486140 26486187 trf 4 11.8 4 100 0 94 25 0 0 74 0.82 ATTT chr1 26489505 26489531 trf 8 3.2 8 100 0 52 38 38 11 11 1.78 CATGCACA chr1 26491537 26491575 trf 1 38.0 1 100 0 76 0 0 0 100 0.00 T chr1 26491848 26491873 trf 12 2.1 12 100 0 50 40 8 24 28 1.83 TGGCATATAAAG chr1 26509285 26509332 trf 4 11.8 4 95 0 85 25 0 2 72 0.96 ATTT chr1 26509463 26509516 trf 5 10.6 5 91 0 79 73 26 0 0 0.83 CAAAA chr1 26513204 26513267 trf 4 15.8 4 93 0 90 23 4 23 47 1.70 TGTA chr1 26516854 26516886 trf 5 6.4 5 96 0 55 84 15 0 0 0.63 AAAAC chr1 26516961 26516998 trf 10 3.8 10 83 16 51 27 2 0 70 1.01 ATTATTATTT chr1 26517318 26517357 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 26520362 26520401 trf 5 7.8 5 88 11 62 17 0 2 79 0.84 TTTTA chr1 26524230 26524259 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 26524259 26524292 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 26524295 26524339 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 26529285 26529372 trf 10 8.4 10 85 8 86 0 42 0 57 0.98 TTCTCTCTCT chr1 26529299 26529368 trf 2 34.5 2 94 0 120 0 46 0 53 1.00 TC chr1 26529373 26529421 trf 4 12.0 4 100 0 96 0 50 0 50 1.00 TTCC chr1 26529421 26529510 trf 3 29.3 3 97 2 169 0 33 0 66 0.92 CTT chr1 26529508 26529587 trf 3 26.7 3 75 7 72 0 63 2 34 1.08 TCC chr1 26530559 26530619 trf 4 15.2 4 84 10 79 25 1 1 71 1.04 ATTT chr1 26533148 26533195 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 26533729 26533759 trf 4 7.5 4 100 0 60 76 23 0 0 0.78 AAAC chr1 26540507 26540560 trf 2 26.5 2 92 0 88 49 47 0 3 1.19 AC chr1 26541164 26541203 trf 4 9.8 4 100 0 78 74 0 0 25 0.82 AATA chr1 26550869 26550932 trf 11 5.6 11 80 17 60 79 17 1 1 0.89 CAAAACAAAAA chr1 26550870 26550928 trf 6 9.7 6 80 15 59 81 15 1 1 0.86 AAAACA chr1 26553827 26553872 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 26553989 26554040 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 26557027 26557072 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 26564623 26564655 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 26568445 26568547 trf 3 34.7 3 68 11 59 35 0 63 0 1.01 AGG chr1 26571583 26571620 trf 4 9.2 4 100 0 74 27 24 0 48 1.51 ATCT chr1 26575518 26575563 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 26575865 26575902 trf 3 12.3 3 94 0 65 0 2 29 67 1.04 TTG chr1 26581439 26581472 trf 2 17.0 2 87 6 50 48 0 48 3 1.17 AG chr1 26581859 26581997 trf 5 26.6 5 78 10 77 71 25 2 0 0.99 AAACA chr1 26581862 26581959 trf 6 16.7 6 87 7 64 70 26 3 0 1.02 CAAAAC chr1 26581966 26582001 trf 4 9.0 4 87 6 54 80 20 0 0 0.72 AAAC chr1 26582088 26582150 trf 2 31.0 2 100 0 124 0 0 50 50 1.00 TG chr1 26582149 26582191 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 GA chr1 26582478 26582566 trf 2 44.5 2 93 2 151 0 53 0 46 1.00 CT chr1 26583699 26583730 trf 4 8.0 4 92 7 55 0 0 22 77 0.77 GTTT chr1 26594671 26594819 trf 6 24.7 6 89 0 143 0 38 8 52 1.36 TCTCTC chr1 26595026 26595084 trf 4 14.2 4 85 3 53 39 0 58 1 1.08 GAAG chr1 26595944 26596053 trf 4 27.2 4 86 0 155 0 67 0 32 0.91 TCCC chr1 26596530 26596556 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 26600112 26600181 trf 5 13.8 5 93 0 120 78 20 0 1 0.83 AAAAC chr1 26600367 26600461 trf 2 47.0 2 89 0 143 48 46 2 2 1.25 AC chr1 26600568 26600631 trf 2 31.0 2 96 3 117 49 1 0 49 1.10 AT chr1 26606132 26606177 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 26608720 26608810 trf 3 30.3 3 79 2 101 2 58 5 33 1.33 CCT chr1 26608738 26608806 trf 12 5.7 12 94 0 118 0 58 5 35 1.22 CTCCTCCTGCTC chr1 26609755 26609807 trf 2 26.0 2 84 0 68 50 7 0 42 1.31 AT chr1 26617265 26617319 trf 2 27.0 2 96 0 99 0 0 48 51 1.00 GT chr1 26620806 26620903 trf 12 7.9 12 76 10 72 67 1 29 2 1.09 AAAGAGAGAAAG chr1 26620806 26620883 trf 4 19.2 4 74 10 68 70 1 25 2 1.08 AAAG chr1 26625978 26626006 trf 6 4.7 6 100 0 56 35 17 46 0 1.49 CAGAGG chr1 26629117 26629202 trf 8 10.6 8 72 22 56 43 1 44 10 1.46 AGAGTAAG chr1 26630363 26630455 trf 5 18.8 5 92 4 89 0 61 0 38 0.96 CTCTC chr1 26630436 26630551 trf 10 11.1 10 85 11 112 0 40 0 58 1.04 CTCTTCTCTT chr1 26630474 26630549 trf 2 39.5 2 87 10 113 0 45 0 54 0.99 TC chr1 26634395 26634448 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 26640708 26640759 trf 10 5.2 10 73 4 50 49 13 1 35 1.54 TATACATATA chr1 26641245 26641289 trf 2 22.5 2 95 4 81 50 50 0 0 1.00 AC chr1 26642121 26642303 trf 5 36.6 5 97 0 240 61 26 12 0 1.31 AAAGC chr1 26645200 26645225 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 26649336 26649365 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 26657391 26657420 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 26661541 26661604 trf 4 15.8 4 100 0 126 0 23 0 76 0.79 TTTC chr1 26661601 26661627 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 26671109 26671204 trf 4 23.8 4 88 4 129 2 50 0 47 1.13 CTCT chr1 26671109 26671204 trf 10 9.5 10 90 4 129 2 50 0 47 1.13 CTCTCTCTCT chr1 26671109 26671204 trf 6 15.8 6 89 4 129 2 50 0 47 1.13 CTCTCT chr1 26672375 26672438 trf 2 31.5 2 96 0 108 50 46 0 3 1.17 AC chr1 26674060 26674122 trf 10 6.2 10 84 0 79 43 4 6 45 1.51 TATGTATATA chr1 26674065 26674122 trf 2 28.5 2 81 0 69 45 3 5 45 1.43 AT chr1 26674642 26674683 trf 12 3.4 12 86 0 55 26 24 9 39 1.86 ATTCATTCAGTC chr1 26686738 26686854 trf 3 38.0 3 84 3 124 2 57 0 39 1.12 CTC chr1 26693585 26693618 trf 9 3.8 9 84 8 50 90 3 6 0 0.52 AAAAAAAAG chr1 26694330 26694462 trf 2 66.0 2 90 0 210 47 47 0 4 1.22 AC chr1 26696146 26696192 trf 2 23.0 2 90 0 74 47 2 2 47 1.26 AT chr1 26697110 26697189 trf 4 19.2 4 97 2 140 0 25 0 74 0.82 CTTT chr1 26697186 26697235 trf 4 12.2 4 100 0 98 0 48 0 51 1.00 TTCC chr1 26697247 26697290 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 26699507 26699563 trf 2 28.0 2 100 0 112 0 0 50 50 1.00 GT chr1 26700082 26700125 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 26702228 26702254 trf 11 2.4 11 100 0 52 0 23 30 46 1.53 GTTGTTGCCCT chr1 26703549 26703607 trf 7 7.9 7 82 17 73 1 0 13 84 0.70 TTTTTTG chr1 26703551 26703607 trf 11 4.9 12 77 18 66 1 0 14 83 0.72 TTTTGTTTTTTG chr1 26703762 26703871 trf 5 21.8 5 96 0 155 0 25 0 74 0.82 TTTTC chr1 26704590 26704742 trf 2 77.0 2 93 2 263 0 50 0 50 1.00 TC chr1 26720550 26720586 trf 4 9.0 4 93 0 63 22 0 0 77 0.76 TTTA chr1 26722213 26722308 trf 2 47.5 2 97 0 181 0 48 0 51 1.00 TC chr1 26725736 26725787 trf 8 6.4 8 95 0 84 0 56 0 43 0.99 TCTCCCTC chr1 26728418 26728503 trf 4 21.0 4 80 2 62 4 30 0 64 1.14 TTCT chr1 26731679 26731742 trf 2 31.5 2 96 0 99 46 0 4 49 1.23 AT chr1 26731739 26731764 trf 4 6.2 4 100 0 50 52 24 0 24 1.48 ATAC chr1 26734269 26734341 trf 2 36.0 2 86 5 65 44 5 5 44 1.50 TA chr1 26735938 26735999 trf 2 30.5 2 93 0 68 0 54 3 42 1.17 CT chr1 26736087 26736114 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 26740957 26740992 trf 5 6.8 5 87 6 52 80 17 2 0 0.84 AAAAC chr1 26741674 26741742 trf 5 13.4 5 90 3 64 70 20 8 0 1.13 AAAAC chr1 26745145 26745175 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 26746767 26746794 trf 12 2.2 12 100 0 54 59 0 7 33 1.25 AATAATAGTAAT chr1 26750371 26750420 trf 4 12.0 4 82 4 62 22 6 24 46 1.74 TGTA chr1 26751431 26751475 trf 7 5.9 7 89 10 61 0 0 20 79 0.73 GTTTTTT chr1 26752948 26752990 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 26758012 26758140 trf 2 65.5 2 80 4 118 45 45 2 7 1.43 CA chr1 26759063 26759101 trf 4 9.5 4 94 0 67 26 26 0 47 1.52 TATC chr1 26763875 26763903 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 26765593 26765632 trf 6 6.3 6 88 11 53 2 0 12 84 0.72 TTGTTT chr1 26766683 26766734 trf 7 7.8 6 83 12 57 0 0 17 82 0.67 GTTTTT chr1 26767535 26767625 trf 2 44.5 2 88 2 99 40 0 10 50 1.36 TA chr1 26767649 26767749 trf 2 51.0 2 85 11 136 49 2 49 0 1.12 GA chr1 26767953 26768002 trf 2 24.5 2 100 0 98 48 0 0 51 1.00 TA chr1 26769569 26769704 trf 2 68.0 2 88 1 137 44 2 7 45 1.44 AT chr1 26773026 26773067 trf 2 20.5 2 100 0 82 48 0 0 51 1.00 TA chr1 26778217 26778256 trf 5 7.8 5 100 0 78 17 0 0 82 0.68 TTTTA chr1 26778985 26779033 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 26779181 26779284 trf 3 34.3 3 98 0 197 66 0 33 0 0.92 AAG chr1 26779916 26779955 trf 8 4.9 8 93 0 60 25 25 43 5 1.75 AGGGCCAG chr1 26780507 26780558 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 26781526 26781559 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 26782344 26782395 trf 2 25.5 2 95 0 93 49 1 49 0 1.12 GA chr1 26786622 26786693 trf 2 35.5 2 100 0 142 50 0 49 0 1.00 AG chr1 26788028 26788098 trf 2 36.5 2 87 8 101 0 52 0 47 1.00 TC chr1 26788100 26788232 trf 4 33.2 4 81 7 153 26 25 1 46 1.61 ATCT chr1 26788951 26789052 trf 2 50.5 2 93 0 175 0 1 48 48 1.19 GT chr1 26790491 26790536 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 26799512 26799711 trf 4 49.2 4 90 2 182 0 38 0 60 1.00 CTTC chr1 26806550 26806635 trf 12 7.3 12 85 7 77 35 0 64 0 0.94 AGAGAGGGAGAG chr1 26806568 26806629 trf 4 15.2 4 96 0 104 27 0 72 0 0.85 GGGA chr1 26820624 26820668 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 AC chr1 26824449 26824486 trf 2 18.5 2 88 0 56 48 2 2 45 1.30 AT chr1 26824956 26824991 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 26824990 26825037 trf 2 23.5 2 91 0 76 51 44 0 4 1.21 AC chr1 26826670 26826699 trf 12 2.3 13 94 5 51 34 20 3 41 1.69 AATTGTCTTACAC chr1 26832163 26832211 trf 5 9.8 5 86 13 57 0 0 18 81 0.70 TTTTG chr1 26841351 26841388 trf 2 18.5 2 100 0 74 0 0 51 48 1.00 GT chr1 26848528 26848695 trf 4 40.5 4 83 7 183 0 44 0 53 1.09 TTCC chr1 26848639 26848764 trf 4 30.8 4 82 9 128 0 33 0 65 0.98 CTTT chr1 26850238 26850287 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 26855732 26855765 trf 2 16.0 2 93 6 57 48 0 3 48 1.17 TA chr1 26865887 26865973 trf 6 14.3 6 100 0 172 50 16 0 33 1.46 ATATAC chr1 26874590 26874648 trf 10 4.8 12 76 18 50 82 15 0 1 0.74 CAAAAAAACAAA chr1 26874591 26874648 trf 8 7.9 7 78 18 55 84 14 0 1 0.71 AAAACAA chr1 26874953 26875011 trf 2 29.0 2 96 0 107 50 48 0 1 1.11 CA chr1 26877799 26877838 trf 4 10.0 4 94 5 71 0 25 0 74 0.82 TTTC chr1 26877838 26877935 trf 2 50.0 2 91 6 155 0 46 0 53 1.00 CT chr1 26882472 26882570 trf 2 52.0 2 86 11 145 0 51 0 48 1.00 TC chr1 26882942 26882985 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 26883618 26883664 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 26886850 26886900 trf 8 6.4 8 88 2 57 26 8 2 64 1.32 TATTTACT chr1 26886850 26886898 trf 4 12.0 4 90 0 51 25 8 2 64 1.32 TATT chr1 26890775 26890816 trf 2 21.5 2 90 9 68 51 0 48 0 1.00 AG chr1 26892082 26892108 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TTTTG chr1 26894813 26894887 trf 10 7.4 10 89 6 51 50 8 0 41 1.32 ATATACATAC chr1 26894813 26894857 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 26898040 26898081 trf 2 20.5 2 92 0 64 53 2 43 0 1.13 AG chr1 26899228 26899401 trf 6 29.3 6 96 3 325 0 66 0 33 0.92 TCCCTC chr1 26901615 26901654 trf 12 3.4 11 80 13 51 84 15 0 0 0.62 AAAAAAACAAA chr1 26901616 26901651 trf 12 2.9 12 87 12 54 82 17 0 0 0.66 AAAAAACAAAAC chr1 26906541 26907210 trf 3 222.7 3 81 3 547 1 56 0 42 1.08 CTC chr1 26906566 26907283 trf 6 120.7 6 75 14 150 1 54 0 43 1.09 TCCTCT chr1 26907208 26907241 trf 3 11.0 3 100 0 66 0 33 0 66 0.92 CTT chr1 26908236 26908311 trf 4 19.0 4 88 2 116 25 26 0 48 1.52 ATCT chr1 26908789 26908827 trf 5 7.6 5 100 0 76 0 0 21 78 0.74 TGTTT chr1 26910755 26910806 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 26910805 26910850 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 26912427 26912507 trf 3 26.7 3 97 0 151 67 0 32 0 0.91 AGA chr1 26913608 26913700 trf 5 19.6 5 94 3 133 0 19 0 80 0.71 TTTCT chr1 26915663 26915692 trf 12 2.4 12 100 0 58 31 6 0 62 1.22 TATTTATTCATA chr1 26916796 26916839 trf 2 22.0 2 90 4 70 0 0 46 53 1.00 TG chr1 26917112 26917161 trf 3 16.3 3 95 0 89 30 0 2 67 1.02 TTA chr1 26921394 26921431 trf 12 3.1 12 96 0 65 5 0 48 45 1.25 TGAGTGTGTGTG chr1 26921397 26921431 trf 2 17.0 2 93 0 59 2 0 50 47 1.16 GT chr1 26924020 26924064 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 26926251 26926295 trf 1 44.0 1 86 0 61 93 0 6 0 0.36 A chr1 26926849 26926905 trf 4 15.2 4 82 14 52 0 0 23 76 0.78 TGTT chr1 26927162 26927222 trf 2 30.0 2 100 0 120 50 50 0 0 1.00 AC chr1 26929088 26929132 trf 2 22.0 2 95 0 79 0 0 47 52 1.00 TG chr1 26932033 26932093 trf 2 30.0 2 96 0 111 0 0 48 51 1.00 GT chr1 26933256 26933297 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 26943778 26943828 trf 1 50.0 1 87 0 73 0 0 6 94 0.33 T chr1 26948871 26948931 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 26950072 26950116 trf 4 11.0 4 85 0 61 27 0 72 0 0.85 GGAG chr1 26950113 26950181 trf 2 34.0 2 100 0 136 50 0 50 0 1.00 GA chr1 26956588 26956652 trf 5 12.8 5 100 0 128 40 40 18 0 1.51 CACAG chr1 26963010 26963063 trf 2 26.5 2 96 0 97 50 47 0 1 1.12 AC chr1 26963882 26963962 trf 2 40.0 2 94 0 142 0 47 0 52 1.00 TC chr1 26963961 26964011 trf 2 25.0 2 91 0 82 50 46 0 4 1.20 CA chr1 26964940 26964978 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 26964977 26965011 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 26965014 26965105 trf 4 23.5 4 91 6 152 49 0 25 25 1.51 AGAT chr1 26965308 26965341 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 26965643 26965693 trf 4 12.5 4 100 0 100 50 0 26 24 1.50 AGAT chr1 26966486 26966554 trf 7 9.3 7 75 20 59 2 1 14 80 0.89 TTTGTTT chr1 26974777 26974834 trf 1 57.0 1 82 0 69 0 1 7 91 0.49 T chr1 26975531 26975564 trf 4 8.5 4 86 6 50 0 3 24 72 0.98 TTTG chr1 26978033 26978079 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 26985559 26985641 trf 4 20.5 4 97 0 119 69 0 6 24 1.11 AAAT chr1 26989175 26989295 trf 2 62.5 2 82 8 151 1 45 1 50 1.21 TC chr1 26993094 26993132 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 27003244 27003281 trf 3 12.3 3 100 0 74 32 0 0 67 0.91 TAT chr1 27003972 27004013 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 27007586 27007725 trf 4 36.2 4 77 11 112 50 0 25 23 1.50 AGAT chr1 27008152 27008197 trf 1 45.0 1 100 0 90 0 0 0 100 0.00 T chr1 27008215 27008386 trf 4 44.8 4 76 13 146 16 32 0 50 1.46 TATC chr1 27008224 27008334 trf 6 18.8 6 73 19 81 13 36 0 50 1.42 TCTCTA chr1 27009331 27009362 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 27012123 27012156 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 27021436 27021483 trf 2 23.5 2 95 0 85 51 46 0 2 1.13 AC chr1 27025029 27025078 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 27036354 27036401 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 27039224 27039249 trf 2 12.5 2 100 0 50 52 0 48 0 1.00 AG chr1 27039226 27039315 trf 6 14.8 6 78 0 61 49 15 33 1 1.52 AGAGAC chr1 27039250 27039301 trf 4 13.2 4 75 8 52 49 23 27 0 1.51 ACAG chr1 27040349 27040434 trf 6 15.2 6 79 18 94 32 21 0 45 1.52 TATCTA chr1 27040391 27040438 trf 9 5.7 9 82 17 50 31 21 0 46 1.51 ATCTATATC chr1 27040405 27040472 trf 4 17.2 4 85 11 95 26 23 0 49 1.51 TATC chr1 27042596 27042659 trf 3 21.0 3 96 0 117 65 33 1 0 1.03 AAC chr1 27045672 27045768 trf 6 16.0 6 88 0 138 45 2 4 47 1.33 ATATAT chr1 27045672 27045768 trf 10 9.6 10 90 0 138 45 2 4 47 1.33 ATATATATAT chr1 27045672 27045768 trf 4 24.0 4 89 0 138 45 2 4 47 1.33 ATAT chr1 27052771 27052812 trf 7 6.0 7 78 16 50 82 17 0 0 0.66 AAAAAAC chr1 27055961 27055993 trf 12 2.7 12 95 0 55 43 9 6 40 1.62 ATATATATGTAC chr1 27056718 27056899 trf 4 44.8 4 92 4 166 65 0 34 0 0.97 AAAG chr1 27057436 27057594 trf 2 79.0 2 80 0 181 1 7 47 43 1.42 TG chr1 27058592 27058662 trf 2 35.0 2 94 0 122 50 47 0 2 1.16 CA chr1 27061059 27061196 trf 5 27.8 5 88 5 73 30 0 69 0 0.89 GAGAG chr1 27061078 27061193 trf 10 11.5 10 90 0 176 25 0 74 0 0.81 GGAGGGGAGG chr1 27061187 27061273 trf 5 17.2 5 93 0 136 59 2 38 0 1.10 GAGAA chr1 27067092 27067122 trf 7 4.3 7 95 0 51 76 23 0 0 0.78 AAAAACC chr1 27067448 27067520 trf 3 24.7 3 80 10 69 4 62 0 33 1.14 TCC chr1 27071990 27072030 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 27085142 27085322 trf 10 18.0 10 81 2 191 1 45 5 47 1.34 TCTCTCTCTC chr1 27085142 27085322 trf 6 30.0 6 81 2 191 1 45 5 47 1.34 TCTCTC chr1 27087627 27087657 trf 2 15.0 2 92 0 51 50 46 0 3 1.18 AC chr1 27091094 27091119 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 27100732 27100843 trf 2 55.0 2 86 1 87 41 5 7 45 1.54 AT chr1 27106095 27106144 trf 2 24.5 2 82 0 62 51 42 2 4 1.32 AC chr1 27106889 27107201 trf 2 158.5 2 87 3 454 4 0 47 48 1.22 GT chr1 27110849 27110879 trf 8 3.8 8 95 0 51 0 6 0 93 0.35 TTTTTTTC chr1 27112446 27112495 trf 2 24.5 2 87 0 62 46 6 2 44 1.39 TA chr1 27117511 27117543 trf 2 16.0 2 93 0 55 3 0 46 50 1.17 TG chr1 27119135 27119177 trf 2 21.0 2 90 0 66 47 47 2 2 1.28 CA chr1 27123753 27123844 trf 6 15.8 6 80 13 111 50 18 0 30 1.47 ACATAT chr1 27128188 27128254 trf 1 66.0 1 78 0 69 89 10 0 0 0.49 A chr1 27136734 27136825 trf 8 11.9 8 83 15 54 1 30 12 56 1.43 TCTTGCTT chr1 27136760 27136826 trf 8 8.0 8 76 18 64 1 36 12 50 1.49 TCTTGCTC chr1 27136760 27136797 trf 10 3.9 10 93 6 60 0 35 10 54 1.36 TCTTGCTCTC chr1 27137580 27137606 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 27145646 27145673 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 27148995 27149038 trf 7 6.0 7 84 15 61 0 0 16 83 0.64 GTTTTTT chr1 27149003 27149041 trf 8 4.9 8 87 6 60 0 0 15 84 0.63 TTTTTGTT chr1 27166182 27166212 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 27168799 27168847 trf 4 12.0 4 100 0 96 75 0 0 25 0.81 AAAT chr1 27171211 27171993 trf 12 63.3 12 68 8 244 30 18 1 49 1.58 TATATATATCTA chr1 27171217 27171986 trf 8 96.1 8 84 8 616 30 18 1 49 1.58 TATCTATA chr1 27171237 27171274 trf 2 18.5 2 94 0 65 45 2 0 51 1.15 TA chr1 27176277 27176310 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 27178622 27178952 trf 4 79.8 4 89 5 385 47 0 52 0 1.00 GAAG chr1 27180362 27180403 trf 7 5.6 7 83 11 55 0 31 14 53 1.41 TCTTGCT chr1 27187119 27187160 trf 7 5.6 7 83 11 55 0 31 14 53 1.41 TCTTGCT chr1 27189231 27189258 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 27189419 27189496 trf 8 9.2 8 88 8 118 0 48 0 51 1.00 TCCCTTCT chr1 27189430 27189455 trf 11 2.3 11 100 0 50 0 44 0 56 0.99 CTTCTTCCCTT chr1 27190206 27190247 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 27192638 27192669 trf 2 16.0 2 93 6 55 48 0 0 51 1.00 AT chr1 27193413 27193534 trf 2 60.5 2 90 6 192 50 0 47 1 1.16 AG chr1 27201248 27201286 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 27207901 27207929 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 27212686 27212738 trf 4 12.8 4 80 11 61 76 23 0 0 0.78 AAAC chr1 27215126 27215156 trf 12 2.6 11 90 10 51 80 20 0 0 0.72 AAAAACAAACA chr1 27217053 27217136 trf 8 11.4 7 87 8 89 85 13 0 1 0.66 AAAAAAC chr1 27217061 27217132 trf 1 71.0 1 75 0 61 87 11 0 1 0.61 A chr1 27220078 27220103 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 27221859 27221918 trf 2 29.5 2 89 0 91 49 5 45 0 1.24 GA chr1 27223551 27223603 trf 2 26.0 2 92 0 86 51 46 0 1 1.12 CA chr1 27225888 27225920 trf 4 7.8 4 93 6 55 78 21 0 0 0.76 AAAC chr1 27229880 27229917 trf 3 12.3 3 100 0 74 67 32 0 0 0.91 AAC chr1 27230617 27230701 trf 5 16.8 5 85 10 102 85 14 0 0 0.59 AAAAC chr1 27230617 27230704 trf 1 87.0 1 72 0 66 86 13 0 0 0.58 A chr1 27231942 27231989 trf 5 9.2 5 88 11 69 78 21 0 0 0.75 AAACA chr1 27232281 27232324 trf 1 43.0 1 100 0 86 100 0 0 0 0.00 A chr1 27236169 27236208 trf 4 10.0 4 88 5 62 48 23 2 25 1.63 TACA chr1 27236205 27236267 trf 2 31.0 2 90 6 99 51 46 0 1 1.10 AC chr1 27240701 27240741 trf 8 5.0 8 96 0 62 0 7 42 50 1.30 TGTGTCTG chr1 27240701 27240738 trf 2 18.5 2 88 0 56 0 5 43 51 1.24 TG chr1 27241191 27241244 trf 1 53.0 1 88 0 70 0 0 7 92 0.39 T chr1 27247386 27247414 trf 4 7.0 4 100 0 56 75 0 0 25 0.81 AATA chr1 27250268 27250322 trf 7 7.0 8 74 14 51 0 0 16 83 0.65 TTTTTTGT chr1 27253110 27253154 trf 8 5.5 8 86 0 52 11 0 25 63 1.27 GTTTGTTA chr1 27253114 27253149 trf 12 2.9 12 100 0 70 14 0 25 60 1.35 GTTAGTTTGTTA chr1 27259093 27259139 trf 4 11.5 4 100 0 92 26 23 0 50 1.50 TATC chr1 27260855 27261048 trf 8 21.8 10 68 27 125 42 1 54 1 1.16 GAGAGAGAGA chr1 27260901 27261020 trf 5 23.8 5 98 0 229 39 0 59 0 1.03 GAGAG chr1 27261982 27262009 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 27264690 27264763 trf 2 36.5 2 85 0 101 43 49 6 0 1.29 AC chr1 27266401 27266483 trf 4 20.2 4 97 2 155 0 50 0 50 1.00 TTCC chr1 27266488 27266537 trf 4 12.2 4 100 0 98 0 51 24 24 1.49 CCTG chr1 27267404 27267465 trf 2 30.5 2 96 0 113 49 0 1 49 1.10 AT chr1 27280587 27280653 trf 2 33.0 2 93 0 114 1 0 46 51 1.10 TG chr1 27283085 27283127 trf 2 22.5 2 86 13 63 50 0 50 0 1.00 GA chr1 27293190 27293255 trf 5 13.0 5 100 0 130 80 0 20 0 0.72 AAAAG chr1 27293251 27293990 trf 6 126.7 6 93 5 647 44 0 54 0 1.01 AAAGGG chr1 27293790 27293990 trf 5 38.6 5 88 7 249 54 0 45 0 1.03 AAGGA chr1 27295433 27295537 trf 5 20.8 5 97 0 199 61 0 38 0 0.96 AAAGG chr1 27298568 27298606 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 27300063 27300098 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 27301718 27301761 trf 10 4.3 10 87 0 59 27 2 69 0 1.00 GAGGGGGAGA chr1 27301744 27301824 trf 2 42.0 2 76 9 69 43 2 53 0 1.14 GA chr1 27307852 27307901 trf 8 6.2 8 92 2 73 0 38 40 20 1.53 GCGCTCTG chr1 27312368 27312402 trf 9 3.8 9 100 0 68 0 11 67 20 1.21 TGGGGGCTG chr1 27315736 27315765 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 27317755 27317780 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 27322448 27322473 trf 2 12.5 2 100 0 50 48 0 0 52 1.00 TA chr1 27322474 27322509 trf 4 8.8 4 100 0 70 51 22 25 0 1.48 AGAC chr1 27323658 27323687 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 27324336 27324380 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 27331691 27331777 trf 2 43.5 2 88 2 120 44 0 4 51 1.22 AT chr1 27334054 27334127 trf 4 18.2 4 79 0 65 56 4 36 2 1.33 AGAG chr1 27334124 27334151 trf 4 6.8 4 100 0 54 51 22 25 0 1.48 AGAC chr1 27336257 27336310 trf 4 13.0 4 85 2 70 24 7 0 67 1.16 ATTT chr1 27336262 27336317 trf 8 7.1 8 79 8 60 25 7 0 67 1.16 ATTTACTT chr1 27340371 27340412 trf 3 13.7 3 100 0 82 34 0 0 65 0.93 ATT chr1 27342135 27342174 trf 8 4.6 9 84 12 55 87 0 12 0 0.55 GAAAAAAAA chr1 27343084 27343128 trf 12 3.7 12 78 0 52 47 9 2 40 1.48 ATATATATATAC chr1 27346160 27346206 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 CT chr1 27349293 27349346 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 27352488 27352520 trf 6 5.7 6 96 3 50 0 0 15 84 0.63 TTTTGT chr1 27352930 27352994 trf 2 32.0 2 96 0 119 0 1 50 48 1.10 GT chr1 27356022 27356079 trf 2 28.5 2 100 0 114 50 49 0 0 1.00 AC chr1 27357285 27357330 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 27358174 27358209 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 27360668 27360713 trf 4 11.2 4 95 0 81 46 26 2 24 1.64 CATA chr1 27360925 27360958 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 27360957 27360986 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 27370498 27370569 trf 2 35.5 2 81 0 70 46 8 2 42 1.49 AT chr1 27370608 27370642 trf 10 3.4 10 91 0 59 50 41 0 8 1.34 CATACACACA chr1 27373643 27373679 trf 3 12.0 3 93 0 63 30 0 2 66 1.06 ATT chr1 27375147 27375210 trf 2 31.5 2 96 0 117 0 49 0 50 1.00 CT chr1 27375641 27375666 trf 4 6.2 4 100 0 50 24 0 24 52 1.48 TGTA chr1 27376049 27376076 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 27379133 27379188 trf 4 13.8 4 100 0 110 49 0 25 25 1.51 TAGA chr1 27379207 27379259 trf 2 26.0 2 96 0 95 51 0 48 0 1.00 GA chr1 27381764 27381854 trf 7 12.0 7 83 15 101 0 0 13 86 0.57 TTTTTTG chr1 27381780 27381853 trf 1 73.0 1 80 0 83 0 0 9 90 0.46 T chr1 27382859 27382909 trf 2 25.0 2 95 0 91 0 50 2 48 1.12 CT chr1 27383554 27383670 trf 5 25.4 5 92 0 74 0 26 11 62 1.29 TTGCT chr1 27383619 27383685 trf 4 16.5 4 96 0 123 0 25 0 74 0.82 TTTC chr1 27391490 27391545 trf 2 27.5 2 100 0 110 50 0 0 49 1.00 AT chr1 27397258 27397417 trf 8 20.0 8 68 24 52 45 6 46 1 1.38 AAGAGAGG chr1 27397259 27397363 trf 10 10.6 10 70 19 58 42 7 49 0 1.38 AGAGAGGCAG chr1 27397277 27397379 trf 12 7.8 12 74 21 80 43 6 50 0 1.29 AGAGAGAGGCAG chr1 27397277 27397378 trf 2 52.0 2 72 23 65 43 6 49 0 1.29 AG chr1 27397279 27397361 trf 8 10.8 8 73 15 75 42 7 50 0 1.30 AGAGAGGC chr1 27408798 27408844 trf 2 23.0 2 95 0 83 0 47 0 52 1.00 TC chr1 27408843 27408878 trf 2 17.5 2 93 0 61 51 48 0 0 1.00 CA chr1 27409057 27409094 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TATT chr1 27412209 27412259 trf 4 12.5 4 100 0 100 50 0 24 26 1.50 TAGA chr1 27414136 27414183 trf 4 12.0 4 90 4 60 19 0 6 74 1.03 ATTT chr1 27419216 27419271 trf 2 27.0 2 92 3 92 1 0 50 47 1.11 TG chr1 27421789 27421815 trf 4 6.5 4 100 0 52 23 76 0 0 0.78 CCAC chr1 27427849 27427964 trf 2 59.5 2 77 16 109 47 4 1 46 1.32 AT chr1 27429446 27429493 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 27430356 27430409 trf 2 26.5 2 96 0 97 50 47 0 1 1.12 AC chr1 27431528 27431560 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 27431597 27431645 trf 8 5.9 8 81 13 62 50 35 2 12 1.52 ACACACAT chr1 27432710 27432818 trf 4 27.0 4 98 0 207 0 49 0 50 1.07 CTTC chr1 27432815 27432869 trf 4 13.5 4 100 0 108 0 24 0 75 0.80 TTCT chr1 27433003 27433066 trf 5 12.4 5 85 12 60 0 0 22 77 0.76 GTTTT chr1 27435645 27435702 trf 5 11.8 5 94 1 82 12 0 21 66 1.23 TGTTA chr1 27439716 27439742 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 27446955 27446980 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 27455882 27455930 trf 2 24.0 2 91 0 78 2 0 47 50 1.12 TG chr1 27455934 27455984 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 27457452 27457532 trf 12 7.0 12 71 21 64 41 0 57 1 1.07 AGAGGGAGAGAG chr1 27457453 27457536 trf 8 11.4 8 74 14 65 39 0 59 1 1.05 GAGAGAGG chr1 27466113 27466184 trf 4 17.8 4 100 0 142 23 25 0 50 1.49 TCTA chr1 27467630 27467687 trf 2 28.5 2 96 0 105 50 47 1 0 1.11 AC chr1 27467686 27467734 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 27474361 27474441 trf 12 7.1 11 75 13 56 47 5 3 43 1.43 TATAATATATA chr1 27476203 27476244 trf 4 10.2 4 89 0 64 26 2 2 68 1.15 ATTT chr1 27478147 27478183 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 27479899 27479945 trf 3 15.3 3 90 0 74 63 0 4 32 1.14 ATA chr1 27481947 27482016 trf 2 34.5 2 100 0 138 50 0 49 0 1.00 AG chr1 27490402 27490432 trf 11 2.6 12 89 10 53 66 0 16 16 1.25 TAAGAATAAGAA chr1 27490402 27490432 trf 6 5.2 6 92 8 53 66 0 16 16 1.25 TAAGAA chr1 27492848 27492878 trf 3 10.0 3 100 0 60 33 0 0 66 0.92 TTA chr1 27496152 27496224 trf 4 18.2 4 95 2 128 0 22 0 77 0.76 TTCT chr1 27503252 27503444 trf 3 64.0 3 86 0 249 36 4 58 0 1.19 GAG chr1 27503590 27503685 trf 10 9.9 10 75 19 78 41 8 49 1 1.40 GGCAGAGAGA chr1 27503593 27503673 trf 12 6.7 12 78 13 85 42 7 48 1 1.39 AGAGAGAGGCAG chr1 27503593 27503703 trf 2 54.0 2 70 28 65 42 8 48 0 1.39 AG chr1 27504695 27504737 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 27510782 27510838 trf 2 28.0 2 96 0 103 0 48 0 51 1.00 TC chr1 27515163 27515191 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 27517713 27517759 trf 1 46.0 1 82 0 56 0 0 8 91 0.43 T chr1 27517720 27517780 trf 4 15.8 4 83 15 58 0 0 16 83 0.65 TTTG chr1 27518283 27518342 trf 2 29.5 2 100 0 118 0 49 0 50 1.00 TC chr1 27520851 27520937 trf 6 15.0 6 87 7 101 0 0 20 79 0.74 GTTTTT chr1 27531495 27531567 trf 2 36.0 2 91 0 108 51 4 0 44 1.20 TA chr1 27533019 27533064 trf 12 3.8 12 85 11 65 8 2 40 48 1.47 TGTGTGTGTATG chr1 27533861 27533901 trf 2 20.0 2 94 0 71 50 47 0 2 1.14 AC chr1 27534285 27534310 trf 4 6.2 4 100 0 50 0 0 48 52 1.00 TTGG chr1 27534314 27534354 trf 5 8.0 5 100 0 80 0 0 20 80 0.72 TTTTG chr1 27538192 27538243 trf 9 5.4 10 76 19 56 80 17 0 1 0.81 AAAACAAAAC chr1 27538192 27538243 trf 5 10.8 5 82 14 56 80 17 0 1 0.81 AAAAC chr1 27540236 27540282 trf 4 11.2 4 97 2 83 0 2 23 73 0.94 TGTT chr1 27540859 27540886 trf 6 4.5 6 100 0 54 85 14 0 0 0.61 AAAACA chr1 27542475 27542549 trf 6 12.3 6 83 0 76 51 39 6 2 1.43 ACACAC chr1 27542497 27542548 trf 8 6.6 8 82 8 61 50 41 5 1 1.37 ACACAGAC chr1 27544006 27544058 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 27544553 27544588 trf 6 5.8 6 100 0 70 0 34 14 51 1.42 TCTCTG chr1 27544689 27544753 trf 5 12.6 5 83 9 67 76 0 21 1 0.87 AAAGA chr1 27547444 27547483 trf 2 19.5 2 94 0 69 48 48 0 2 1.15 AC chr1 27554546 27554584 trf 7 5.6 7 85 14 53 0 0 15 84 0.63 TTTGTTT chr1 27556665 27556709 trf 4 11.0 4 95 0 52 65 9 0 25 1.21 TAAA chr1 27557555 27557602 trf 3 15.7 3 86 0 67 34 0 25 40 1.56 TAG chr1 27557998 27558028 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 27564067 27564187 trf 8 15.5 8 78 6 113 52 11 35 0 1.38 CAGAGAGA chr1 27564068 27564181 trf 10 12.6 9 74 17 53 53 9 37 0 1.34 AGAGAGACA chr1 27564068 27564167 trf 10 9.5 10 76 14 85 52 9 38 0 1.33 AGAGAGACAG chr1 27565734 27565808 trf 2 37.0 2 97 0 139 50 1 48 0 1.09 GA chr1 27568051 27568135 trf 2 42.0 2 92 0 141 0 46 3 50 1.19 TC chr1 27568142 27568169 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 27573599 27573644 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 27584545 27584647 trf 6 16.0 6 73 11 60 50 33 0 16 1.46 TACACA chr1 27584578 27584651 trf 2 36.5 2 81 0 56 52 35 0 12 1.39 AC chr1 27584650 27584758 trf 8 13.0 8 75 7 63 40 16 6 36 1.75 ATATACAT chr1 27586220 27586444 trf 4 56.5 4 81 10 129 47 5 19 27 1.72 TAGA chr1 27589655 27589691 trf 2 18.0 2 88 0 54 47 0 5 47 1.25 TA chr1 27592149 27592187 trf 4 9.8 4 94 5 69 78 21 0 0 0.74 AAAC chr1 27596859 27596959 trf 3 33.0 3 95 2 182 67 0 32 1 0.98 GAA chr1 27597986 27598202 trf 8 28.5 8 66 16 59 3 55 0 41 1.18 TCTCTCTC chr1 27597986 27598202 trf 6 38.0 6 70 15 59 3 55 0 41 1.18 TCTCTC chr1 27598123 27598206 trf 8 11.0 8 77 20 90 0 60 0 39 0.97 TCTCCCTC chr1 27598193 27598256 trf 10 6.0 10 77 19 58 1 76 0 22 0.88 CCCTCCTCCC chr1 27600745 27600784 trf 4 9.8 4 82 0 51 28 66 2 2 1.18 CACC chr1 27602659 27602784 trf 6 20.8 6 89 3 171 47 3 47 2 1.31 AGAGAG chr1 27602659 27602784 trf 8 15.6 8 86 3 171 47 3 47 2 1.31 AGAGAGAG chr1 27603839 27603872 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 27604932 27604967 trf 2 17.0 2 94 5 61 48 2 0 48 1.16 AT chr1 27606884 27606930 trf 5 9.4 5 97 2 85 58 19 0 21 1.39 ATACA chr1 27607108 27607159 trf 4 12.8 4 91 0 66 0 27 19 52 1.46 TGTC chr1 27607173 27607206 trf 2 16.5 2 100 0 66 48 0 51 0 1.00 GA chr1 27609079 27609145 trf 5 13.2 5 76 17 57 1 19 0 78 0.82 CTTTT chr1 27613094 27613221 trf 4 32.2 4 79 3 132 44 0 25 29 1.60 ATAG chr1 27614841 27614880 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 27618620 27618647 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 27620404 27620446 trf 1 42.0 1 90 0 66 95 0 4 0 0.28 A chr1 27621487 27621532 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 27621990 27622046 trf 4 14.2 4 88 3 87 46 1 25 26 1.63 AGAT chr1 27622049 27622095 trf 4 11.5 4 80 0 56 50 23 2 23 1.61 ATAC chr1 27624006 27624071 trf 4 16.0 4 93 3 112 52 0 47 0 1.00 AAGG chr1 27627880 27627920 trf 4 10.0 4 100 0 80 75 0 0 25 0.81 TAAA chr1 27629814 27629847 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 27629846 27629889 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 27629888 27630058 trf 4 42.8 4 80 1 108 52 12 34 0 1.43 AGAG chr1 27631088 27631125 trf 4 9.2 4 100 0 74 24 24 0 51 1.49 TCTA chr1 27631122 27631199 trf 2 38.0 2 86 12 104 49 2 2 45 1.29 TA chr1 27632733 27632822 trf 6 15.0 6 75 2 54 0 37 12 50 1.40 TCTCTC chr1 27632751 27632800 trf 8 6.1 8 100 0 98 0 38 12 48 1.41 CTCTCTGT chr1 27634921 27634959 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 27636716 27636748 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 27637554 27637600 trf 2 23.0 2 90 0 74 2 47 0 50 1.13 TC chr1 27637608 27637664 trf 2 28.5 2 85 3 78 50 44 3 1 1.29 AC chr1 27639092 27639130 trf 1 38.0 1 94 0 67 0 2 0 97 0.18 T chr1 27640239 27640280 trf 4 10.2 4 100 0 82 51 0 24 24 1.49 ATAG chr1 27640289 27640338 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 27643293 27643332 trf 4 9.8 4 100 0 78 25 0 0 74 0.82 TTAT chr1 27643612 27643671 trf 6 10.3 6 83 8 54 79 18 0 1 0.81 AAAACA chr1 27644593 27644689 trf 6 16.0 6 97 0 183 33 1 16 48 1.53 TGTATA chr1 27645809 27645854 trf 4 11.2 4 100 0 90 75 0 0 24 0.80 ATAA chr1 27647087 27647161 trf 4 18.2 4 94 2 130 27 24 0 48 1.51 TCTA chr1 27650237 27650264 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 27650306 27650339 trf 6 5.8 6 96 3 52 0 9 0 90 0.44 TTTTTC chr1 27652772 27652805 trf 8 4.1 8 92 0 57 15 12 27 45 1.81 GTGATTCT chr1 27670397 27670447 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 27674863 27674908 trf 5 9.8 5 95 4 62 80 20 0 0 0.72 AAAAC chr1 27674864 27674907 trf 4 9.8 4 95 5 50 79 20 0 0 0.74 AAAC chr1 27676093 27676132 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 27676773 27676884 trf 8 14.4 8 84 11 108 2 34 13 49 1.56 CTCTCTTG chr1 27686174 27686295 trf 2 61.5 2 82 6 140 45 3 4 47 1.38 AT chr1 27686306 27686338 trf 4 8.0 4 100 0 64 50 0 25 25 1.50 TAGA chr1 27689895 27689940 trf 1 45.0 1 86 0 63 93 0 6 0 0.35 A chr1 27690005 27690080 trf 1 75.0 1 81 0 87 0 0 9 90 0.45 T chr1 27690849 27690957 trf 2 54.0 2 98 0 207 50 0 49 0 1.00 GA chr1 27694636 27694681 trf 4 11.2 4 100 0 90 51 24 0 24 1.49 ACAT chr1 27694980 27695100 trf 5 23.8 5 87 5 152 74 0 23 1 0.97 AAAAG chr1 27698173 27698313 trf 4 35.5 4 94 2 248 48 0 26 25 1.51 ATAG chr1 27698326 27698384 trf 4 14.5 4 100 0 116 74 0 25 0 0.82 GAAA chr1 27700119 27700160 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 27702791 27702862 trf 2 35.5 2 88 0 106 1 43 2 52 1.24 TC chr1 27702795 27702894 trf 10 10.3 10 79 8 98 1 37 10 51 1.42 TCTCTCTCTG chr1 27702895 27702949 trf 4 13.5 4 92 0 90 25 27 0 46 1.53 TCTA chr1 27714184 27714212 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 27714221 27714335 trf 2 57.5 2 78 1 104 47 5 5 42 1.48 AT chr1 27718826 27718871 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 27720030 27720125 trf 5 19.0 5 98 0 136 53 0 46 0 1.00 GAGAA chr1 27720980 27721125 trf 6 24.0 6 80 8 53 0 45 2 52 1.12 CTTTCT chr1 27721003 27721114 trf 2 56.0 2 90 1 170 0 48 1 49 1.11 CT chr1 27723427 27723481 trf 2 26.5 2 96 3 99 48 0 1 50 1.11 TA chr1 27744500 27744564 trf 7 9.6 7 80 10 80 0 1 12 85 0.66 TTTTTGT chr1 27744500 27744549 trf 1 49.0 1 79 0 53 0 0 10 89 0.48 T chr1 27747808 27747844 trf 12 3.0 12 91 0 54 16 72 2 8 1.21 TCCCCCACCCAC chr1 27754553 27754602 trf 5 9.8 5 86 0 71 75 18 6 0 1.00 AAAAC chr1 27762438 27762477 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 27767312 27767347 trf 2 18.0 2 94 5 63 0 0 51 48 1.00 GT chr1 27767803 27767914 trf 4 28.8 4 80 7 50 51 21 27 0 1.48 AGAC chr1 27767821 27767850 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 27767851 27767956 trf 6 17.5 6 88 0 120 50 12 37 0 1.40 AGAGAC chr1 27768652 27768837 trf 4 45.8 4 95 2 226 17 24 7 50 1.72 TCTA chr1 27769236 27769287 trf 2 26.0 2 96 4 95 0 0 50 49 1.00 TG chr1 27771625 27771724 trf 4 22.5 4 98 1 117 22 0 0 77 0.76 TTTA chr1 27781281 27781315 trf 5 6.8 5 89 0 50 82 14 2 0 0.79 AAAAC chr1 27785805 27785843 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 27787853 27787893 trf 1 40.0 1 100 0 80 0 0 0 100 0.00 T chr1 27788254 27788301 trf 5 10.0 5 86 9 64 82 17 0 0 0.66 AAAAC chr1 27788982 27789022 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 TA chr1 27789023 27789073 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 27794275 27794319 trf 8 5.5 8 78 10 54 84 15 0 0 0.63 AAAAACAA chr1 27796815 27796862 trf 2 23.5 2 86 0 67 0 6 42 51 1.27 TG chr1 27799633 27799681 trf 4 11.5 4 86 8 53 0 2 18 79 0.84 TTGT chr1 27801690 27801717 trf 6 4.5 6 100 0 54 0 0 14 85 0.61 TTTTTG chr1 27801695 27801740 trf 12 4.0 12 77 16 51 0 0 28 71 0.87 GTTTTTGGTTTG chr1 27801710 27801763 trf 4 12.8 4 88 7 63 0 0 28 71 0.86 TTTG chr1 27808371 27808420 trf 4 12.2 4 100 0 98 73 0 26 0 0.83 GAAA chr1 27808417 27808452 trf 4 8.8 4 100 0 70 51 0 48 0 1.00 AAGG chr1 27808744 27808914 trf 6 28.3 6 84 0 124 41 12 1 44 1.50 ATATAT chr1 27811295 27811334 trf 4 9.8 4 100 0 78 74 0 0 25 0.82 ATAA chr1 27814003 27814040 trf 4 9.2 4 93 0 65 72 0 2 24 0.97 AAAT chr1 27817285 27817368 trf 10 8.4 10 87 11 100 0 0 13 86 0.56 TTTTTTTTTG chr1 27817285 27817368 trf 1 83.0 1 73 0 67 0 0 13 86 0.56 T chr1 27820829 27820870 trf 2 20.5 2 89 0 64 4 0 48 46 1.23 TG chr1 27825491 27825535 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 27826143 27826203 trf 2 30.0 2 100 0 120 0 50 0 50 1.00 CT chr1 27827705 27827747 trf 12 3.7 12 84 6 52 4 7 40 47 1.52 TGTGTGTGCATG chr1 27828591 27828624 trf 5 6.8 5 86 6 50 3 0 15 81 0.80 TTTTG chr1 27829212 27829254 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 27833136 27833183 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 27833644 27833682 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 27838083 27838157 trf 5 14.6 5 97 2 139 0 0 18 81 0.70 TTTTG chr1 27839837 27839894 trf 8 6.9 8 80 7 60 0 36 12 50 1.40 TCTCTGTC chr1 27839837 27839898 trf 10 5.9 10 79 7 68 0 36 13 50 1.41 TCTCTGTCTC chr1 27839839 27839888 trf 12 4.2 12 76 10 57 0 36 12 51 1.40 TCTGTCTCTCTG chr1 27842498 27842631 trf 3 43.3 3 95 4 223 67 0 32 0 0.91 AGA chr1 27842633 27842710 trf 9 7.9 9 75 16 73 42 1 54 1 1.16 AGAAGGAGG chr1 27842636 27842730 trf 12 8.1 12 78 7 77 45 1 52 1 1.15 AGGAGGAGAAGG chr1 27842636 27842692 trf 3 18.7 3 84 0 76 37 1 58 1 1.19 AGG chr1 27847054 27847085 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 27848444 27848485 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 27850796 27850854 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 AT chr1 27851620 27851744 trf 8 15.0 8 78 12 72 12 1 33 52 1.48 ATGTGTGT chr1 27851620 27851659 trf 4 9.8 4 85 0 51 20 0 25 53 1.45 ATGT chr1 27851663 27851746 trf 10 8.3 10 86 5 96 7 1 39 51 1.37 TGTATGTGTG chr1 27851667 27851754 trf 12 7.1 12 80 13 79 8 1 40 50 1.39 TGTGTGTATGTG chr1 27851676 27851747 trf 2 35.0 2 85 2 88 5 0 42 52 1.25 TG chr1 27852485 27852518 trf 2 16.5 2 93 0 57 3 0 48 48 1.17 GT chr1 27852537 27852591 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 27853059 27853154 trf 2 47.5 2 91 0 154 0 1 45 53 1.07 TG chr1 27853542 27853633 trf 2 45.0 2 82 6 76 48 9 2 39 1.49 AT chr1 27858968 27858996 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 27859472 27859501 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 27870554 27870607 trf 4 12.8 4 88 4 70 1 1 20 75 0.99 TTTG chr1 27873740 27873783 trf 4 10.8 4 100 0 86 76 0 0 23 0.78 AAAT chr1 27881855 27881903 trf 8 6.1 8 87 4 53 45 43 0 10 1.38 TACACACA chr1 27881856 27881894 trf 2 19.5 2 89 5 60 50 47 0 2 1.15 AC chr1 27888142 27888231 trf 5 18.2 5 88 8 123 0 40 0 59 0.97 TCTCT chr1 27894573 27894890 trf 6 53.3 6 84 10 332 0 45 0 53 1.02 CTTCTC chr1 27896368 27896446 trf 2 39.0 2 92 0 120 2 1 46 50 1.23 GT chr1 27900152 27900189 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 27904744 27904806 trf 5 12.6 5 96 3 117 80 0 0 19 0.71 AAAAT chr1 27910096 27910147 trf 2 25.5 2 89 0 75 54 43 0 1 1.11 AC chr1 27918186 27918218 trf 5 6.8 5 92 7 50 81 18 0 0 0.70 AAAAC chr1 27920361 27920428 trf 4 16.8 4 87 0 98 31 0 68 0 0.90 GAGG chr1 27920875 27920934 trf 2 29.5 2 96 0 109 0 47 0 52 1.00 TC chr1 27922102 27922154 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 27923845 27923889 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 27924715 27924759 trf 4 11.0 4 95 0 79 72 0 2 25 0.96 TAAA chr1 27926759 27926803 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 27931537 27931574 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 27932344 27932374 trf 4 7.5 4 100 0 60 23 0 0 76 0.78 TTTA chr1 27934146 27934184 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 27934231 27934263 trf 5 6.4 5 100 0 64 0 0 18 81 0.70 TTGTT chr1 27941796 27941835 trf 5 7.8 5 86 11 53 84 15 0 0 0.62 AAAAC chr1 27947206 27947263 trf 2 28.5 2 92 0 96 1 1 47 49 1.22 TG chr1 27947670 27947733 trf 4 15.8 4 100 0 126 0 49 0 50 1.00 TTCC chr1 27947734 27947791 trf 2 28.5 2 100 0 114 0 49 0 50 1.00 TC chr1 27949270 27949317 trf 10 4.5 10 86 7 58 85 14 0 0 0.61 AAAAAAAAAC chr1 27949282 27949316 trf 5 6.8 5 100 0 68 82 17 0 0 0.67 AAAAC chr1 27957172 27957396 trf 5 44.8 5 97 0 178 41 0 53 4 1.22 AGAGG chr1 27957242 27957399 trf 5 31.4 5 99 0 197 51 0 48 0 1.00 AGAGA chr1 27962823 27962870 trf 5 9.4 5 95 0 85 78 0 21 0 0.75 AAAGA chr1 27964003 27964057 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 27964056 27964097 trf 2 21.0 2 90 5 66 51 0 48 0 1.00 AG chr1 27965048 27965096 trf 5 10.0 5 84 13 57 83 0 16 0 0.65 AAAAG chr1 27965048 27965095 trf 11 4.4 10 82 12 58 85 0 14 0 0.61 AAAAAAAAAG chr1 27965196 27965277 trf 10 8.1 10 84 0 99 49 41 4 3 1.42 ACACACACAC chr1 27965196 27965277 trf 6 13.5 6 81 0 99 49 41 4 3 1.42 ACACAC chr1 27965196 27965277 trf 4 20.2 4 84 0 99 49 41 4 3 1.42 ACAC chr1 27971019 27971048 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 27971218 27971266 trf 2 24.0 2 95 0 87 52 47 0 0 1.00 AC chr1 27983282 27983328 trf 3 15.7 3 81 4 58 0 63 4 32 1.14 CCT chr1 27983287 27983328 trf 9 4.6 9 93 0 64 0 60 4 34 1.18 CCTCCTCGT chr1 27983368 27983435 trf 2 33.5 2 96 0 125 0 49 0 50 1.00 CT chr1 27983434 27983470 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 27986273 27986305 trf 1 32.0 1 93 0 55 96 0 3 0 0.20 A chr1 27989766 27989813 trf 8 5.9 8 87 7 69 89 0 10 0 0.49 AAAAAAGA chr1 27989766 27989812 trf 1 46.0 1 82 0 56 91 0 8 0 0.43 A chr1 27992689 27992736 trf 8 5.8 8 80 14 51 80 17 0 2 0.80 AAAAAAAC chr1 27992776 27992801 trf 11 2.3 11 100 0 50 16 40 24 20 1.91 CTCACCTAGGG chr1 27992833 27992893 trf 3 20.3 3 93 3 104 1 0 31 66 1.01 TGT chr1 28000847 28000881 trf 12 2.8 12 95 0 59 8 44 0 47 1.34 CTTACTCTCTCT chr1 28000970 28001058 trf 10 8.8 10 98 0 149 0 44 5 50 1.26 CTCTCTCTGT chr1 28000970 28001059 trf 2 44.5 2 88 0 133 0 44 5 49 1.25 CT chr1 28004542 28004604 trf 2 31.0 2 90 0 97 3 0 45 51 1.17 GT chr1 28007735 28007834 trf 2 52.5 2 78 15 104 48 0 49 2 1.12 AG chr1 28007751 28007833 trf 7 12.0 7 90 3 116 45 0 53 1 1.08 GAGAGAG chr1 28008388 28008442 trf 3 18.0 3 96 0 99 0 64 0 35 0.94 CTC chr1 28008526 28008624 trf 3 32.7 3 100 0 196 67 0 32 0 0.91 AAG chr1 28014973 28015016 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 28015742 28015778 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 28019831 28019880 trf 2 24.5 2 100 0 98 0 51 0 48 1.00 CT chr1 28019879 28019913 trf 2 17.5 2 93 6 61 47 52 0 0 1.00 CA chr1 28020970 28021062 trf 2 46.0 2 95 4 168 48 1 0 50 1.08 TA chr1 28037003 28037053 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 28037052 28037117 trf 2 32.5 2 100 0 130 49 0 50 0 1.00 GA chr1 28040180 28040212 trf 5 6.4 5 100 0 64 0 0 18 81 0.70 TTGTT chr1 28042827 28042901 trf 2 37.5 2 94 2 132 0 48 1 50 1.09 TC chr1 28048285 28048350 trf 8 7.8 8 79 16 69 1 1 12 84 0.76 GTTTTTTT chr1 28049960 28050182 trf 3 73.3 3 86 3 212 0 43 0 56 0.99 CTT chr1 28050213 28050259 trf 12 3.8 12 82 0 65 6 45 0 47 1.28 TCCTTCTCCTCT chr1 28051863 28051915 trf 2 26.0 2 96 0 95 1 0 48 50 1.12 GT chr1 28052838 28052875 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 28056030 28056095 trf 4 16.2 4 96 0 121 24 27 0 47 1.52 CTAT chr1 28056120 28056159 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 28056354 28056387 trf 7 4.7 7 92 0 57 0 24 0 75 0.80 TCTTTCT chr1 28059201 28059316 trf 5 22.2 5 68 19 58 1 1 22 73 1.01 TGTTT chr1 28059225 28059284 trf 4 15.0 4 79 13 52 1 0 25 72 0.93 TTTG chr1 28059242 28059295 trf 12 4.5 12 83 4 54 1 0 32 66 1.03 TTGTTTGGTTGG chr1 28059643 28059687 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 28060985 28061042 trf 2 28.5 2 92 0 96 1 0 45 52 1.11 TG chr1 28067825 28067867 trf 10 4.4 10 82 8 52 38 2 2 57 1.25 TTTAATTATA chr1 28067825 28067859 trf 9 3.7 9 84 7 50 38 0 2 58 1.13 TTTAATATA chr1 28070003 28070054 trf 2 25.5 2 91 0 84 1 1 47 49 1.24 TG chr1 28070659 28070729 trf 12 6.0 11 78 21 56 0 0 22 77 0.78 GTTTTTTGTTT chr1 28070694 28070729 trf 4 9.0 4 93 6 63 0 0 22 77 0.78 GTTT chr1 28070878 28070912 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 28075425 28075455 trf 5 5.8 5 96 4 51 83 16 0 0 0.65 AAAAC chr1 28081216 28081249 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 28087499 28087584 trf 2 42.5 2 90 0 134 49 47 0 3 1.18 CA chr1 28089947 28090652 trf 6 106.3 6 75 19 504 1 61 2 35 1.16 TCTCCC chr1 28089959 28090636 trf 8 91.2 8 68 23 391 1 61 2 34 1.16 TCTCCCTC chr1 28091572 28091616 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 28091849 28091893 trf 1 44.0 1 81 0 52 90 0 9 0 0.44 A chr1 28099884 28099931 trf 2 23.5 2 95 0 85 51 46 0 2 1.13 AC chr1 28105394 28105423 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 28108160 28108186 trf 4 6.5 4 100 0 52 73 0 0 26 0.84 ATAA chr1 28113039 28113078 trf 2 19.5 2 83 0 51 51 5 0 43 1.24 TA chr1 28113040 28113078 trf 8 4.8 8 93 0 58 52 5 0 42 1.24 ATATATAC chr1 28119882 28119926 trf 4 11.8 4 81 13 58 77 0 0 22 0.77 AAAT chr1 28121796 28121884 trf 2 44.0 2 93 0 149 50 46 3 0 1.18 AC chr1 28123467 28123512 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 28123511 28123544 trf 2 16.5 2 100 0 66 51 0 0 48 1.00 AT chr1 28123666 28123698 trf 4 8.0 4 100 0 64 50 0 25 25 1.50 GATA chr1 28123667 28123789 trf 8 14.8 8 77 6 73 46 15 11 26 1.80 ATAGATAC chr1 28123697 28123746 trf 12 4.1 12 89 0 53 48 24 2 24 1.61 ACATATATACAC chr1 28123704 28123744 trf 4 10.0 4 88 0 62 50 25 0 25 1.50 TACA chr1 28124234 28124284 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 28126811 28126878 trf 2 33.5 2 100 0 134 50 0 49 0 1.00 AG chr1 28133812 28133838 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 28134077 28134121 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 ATTT chr1 28135340 28135375 trf 4 8.8 4 100 0 70 74 25 0 0 0.82 CAAA chr1 28136223 28136286 trf 5 11.0 6 77 19 64 0 1 15 82 0.74 GTTTTT chr1 28136225 28136286 trf 10 5.9 10 84 1 77 0 1 14 83 0.72 TTTTTTTTTG chr1 28138966 28138994 trf 3 9.3 3 100 0 56 32 0 0 67 0.91 TAT chr1 28140498 28140585 trf 2 44.0 2 90 2 140 52 0 47 0 1.00 GA chr1 28142731 28142779 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 28142870 28142903 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 28144174 28144339 trf 10 16.5 10 82 2 179 47 42 5 4 1.46 CACACACACA chr1 28144174 28144339 trf 4 41.2 4 87 2 179 47 42 5 4 1.46 CACA chr1 28146694 28146822 trf 2 64.0 2 93 0 220 49 0 50 0 1.06 GA chr1 28151941 28151987 trf 9 4.7 10 78 21 53 0 2 30 67 1.03 GTTTGTTGTT chr1 28152291 28152353 trf 5 12.4 5 96 0 115 79 20 0 0 0.74 AAAAC chr1 28153175 28153239 trf 10 6.4 10 88 0 83 50 7 0 42 1.31 ATATATATAT chr1 28153175 28153239 trf 4 16.0 4 93 0 83 50 7 0 42 1.31 ATAT chr1 28153798 28153845 trf 2 23.5 2 82 0 58 51 42 0 6 1.27 AC chr1 28163405 28163540 trf 4 33.8 4 87 0 90 0 36 10 53 1.35 TCTC chr1 28163407 28163542 trf 12 11.1 12 84 3 108 0 35 11 53 1.37 TCTCTCTCTCTG chr1 28163415 28163472 trf 6 9.2 6 84 7 69 0 38 12 49 1.41 TCTGTC chr1 28163539 28163574 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 28164512 28164546 trf 9 3.9 9 88 3 52 35 8 23 32 1.86 ATCATGATG chr1 28164880 28164921 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 28167856 28168085 trf 5 44.8 5 86 9 166 47 0 51 0 1.07 AGAGG chr1 28170740 28170784 trf 12 3.8 11 80 11 52 81 18 0 0 0.68 AAAAAAACAAA chr1 28176056 28176160 trf 2 52.0 2 96 0 190 0 48 0 51 1.00 TC chr1 28176159 28176192 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 28179877 28179924 trf 6 7.7 6 80 4 58 0 2 17 80 0.80 TTTTTG chr1 28181556 28181674 trf 6 19.7 6 84 6 78 73 8 16 0 1.12 AAAAAG chr1 28182106 28182194 trf 4 22.0 4 92 0 149 1 50 0 48 1.08 TTCC chr1 28182203 28182264 trf 4 15.2 4 100 0 122 0 24 0 75 0.80 TCTT chr1 28182362 28182444 trf 2 41.0 2 95 0 146 50 47 0 2 1.14 CA chr1 28183160 28183192 trf 12 2.7 12 95 0 55 46 0 6 46 1.27 ATATATATGTAA chr1 28183227 28183256 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 28185430 28185472 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 28186002 28186032 trf 5 6.0 5 100 0 60 0 0 20 80 0.72 GTTTT chr1 28193540 28193577 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 28198351 28198395 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 28199138 28199181 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 28200847 28200886 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 28200885 28201018 trf 6 22.2 6 93 0 167 43 0 56 0 0.99 AGAGAG chr1 28201912 28201947 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 28202136 28202186 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 28202825 28202869 trf 2 22.0 2 100 0 88 50 0 50 0 1.00 GA chr1 28203185 28203319 trf 3 44.7 3 90 3 216 65 0 34 0 0.93 AAG chr1 28205064 28205103 trf 4 9.8 4 100 0 78 0 0 23 76 0.78 TTTG chr1 28209958 28210060 trf 6 16.7 6 75 10 82 0 72 0 26 0.91 CTCCCC chr1 28209958 28210054 trf 11 9.0 10 73 19 63 1 72 0 26 0.91 CTCCCCTCCC chr1 28215077 28215130 trf 2 26.5 2 100 0 106 0 0 50 49 1.00 GT chr1 28215905 28215960 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 28216529 28216577 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 28216576 28216653 trf 2 38.5 2 97 0 145 49 49 0 1 1.09 CA chr1 28217933 28217958 trf 7 3.6 7 100 0 50 0 0 16 84 0.63 TTTGTTT chr1 28224391 28224436 trf 2 23.0 2 95 4 83 51 0 0 48 1.00 TA chr1 28224983 28225039 trf 9 5.9 9 81 10 67 0 16 0 83 0.64 TTTTTTTTC chr1 28224983 28225039 trf 5 11.8 5 83 16 75 0 16 0 83 0.64 TTTTC chr1 28227135 28227161 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 28230278 28230312 trf 6 5.7 6 100 0 68 0 0 14 85 0.60 TTTTGT chr1 28230856 28230895 trf 3 13.0 3 94 0 69 64 0 2 33 1.08 AAT chr1 28235439 28235486 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 28236468 28236514 trf 3 15.3 3 100 0 92 67 0 0 32 0.91 ATA chr1 28238976 28239053 trf 4 19.8 4 81 5 86 48 22 2 27 1.64 ATAC chr1 28240558 28240587 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 28243289 28243581 trf 4 72.5 4 86 8 270 50 0 48 0 1.03 GGAA chr1 28244104 28244135 trf 12 2.6 12 94 0 53 35 41 0 22 1.54 ATCATCACCATC chr1 28247882 28247915 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 28248280 28248314 trf 2 17.0 2 87 0 50 52 44 0 2 1.16 AC chr1 28255916 28255949 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 AAAC chr1 28256509 28256621 trf 2 56.0 2 96 0 161 50 6 0 43 1.27 AT chr1 28262106 28262133 trf 11 2.5 11 100 0 54 7 18 14 59 1.58 TCTTTGTTCGA chr1 28263753 28263828 trf 4 18.5 4 76 13 73 1 0 18 80 0.79 TTGT chr1 28263760 28263832 trf 8 8.8 8 85 11 92 0 0 16 83 0.65 TTTTTTGT chr1 28268960 28269010 trf 4 12.2 4 97 2 91 26 0 0 74 0.83 TTAT chr1 28269443 28269522 trf 2 39.5 2 90 0 122 0 3 44 51 1.19 TG chr1 28275626 28275687 trf 6 9.8 6 77 19 63 80 19 0 0 0.72 AAAAAC chr1 28275637 28275694 trf 7 8.1 7 79 11 55 78 21 0 0 0.74 AAACCAA chr1 28278640 28278667 trf 12 2.2 12 100 0 54 51 40 0 7 1.30 ACATACACACAC chr1 28280331 28280419 trf 2 44.0 2 81 4 88 46 5 4 43 1.47 AT chr1 28284084 28284132 trf 4 12.2 4 95 4 89 25 0 0 75 0.81 TATT chr1 28295391 28295458 trf 3 22.3 3 87 6 100 37 1 31 29 1.67 AGT chr1 28296721 28296770 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 28296769 28296824 trf 4 13.8 4 100 0 110 76 0 0 23 0.79 AAAT chr1 28300419 28300560 trf 7 19.6 7 85 10 171 0 0 16 82 0.70 TTTGTTT chr1 28300465 28300559 trf 1 94.0 1 74 0 80 0 0 12 87 0.55 T chr1 28311145 28311195 trf 3 16.7 3 100 0 100 66 0 0 34 0.92 TAA chr1 28312278 28312321 trf 4 11.0 4 90 5 70 0 0 23 76 0.78 GTTT chr1 28313798 28313847 trf 2 24.5 2 95 0 89 2 0 46 51 1.12 TG chr1 28317671 28317713 trf 5 8.8 5 84 10 61 80 0 16 2 0.81 AAAAG chr1 28320050 28320083 trf 9 3.8 9 88 4 50 0 18 12 69 1.18 TTGTTCTTC chr1 28320683 28320759 trf 1 76.0 1 76 0 62 86 11 1 0 0.62 A chr1 28321906 28322004 trf 2 49.0 2 85 0 124 4 4 41 50 1.40 GT chr1 28322445 28322475 trf 12 2.5 12 94 0 51 3 6 46 43 1.46 TGTGTGCGTGTA chr1 28328407 28328522 trf 10 11.7 10 85 7 139 53 8 38 0 1.32 AGAGAGAGAC chr1 28328407 28328529 trf 6 20.3 6 80 0 118 52 9 38 0 1.33 AGAGAG chr1 28328413 28328536 trf 8 15.4 8 80 6 115 51 9 39 0 1.35 AGAGACAG chr1 28335624 28335649 trf 10 2.5 10 100 0 50 48 0 8 44 1.32 TTTAATAAGA chr1 28336457 28336489 trf 9 3.4 10 87 12 50 9 0 15 75 1.05 TATTGTTTGT chr1 28337635 28337703 trf 2 34.0 2 87 0 82 7 1 41 50 1.39 TG chr1 28346305 28346404 trf 8 12.4 8 76 8 76 7 4 39 49 1.49 TGTATGTG chr1 28346318 28346404 trf 2 43.0 2 86 0 100 4 4 40 50 1.44 GT chr1 28347735 28347856 trf 8 15.1 8 91 2 127 38 0 61 0 0.96 AGGAGGGA chr1 28347738 28347843 trf 4 26.0 4 94 1 111 40 0 60 0 0.97 AGGA chr1 28347790 28347855 trf 4 16.2 4 93 0 112 29 0 70 0 0.87 AGGG chr1 28347858 28347920 trf 4 15.2 4 96 3 115 75 0 24 0 0.80 AGAA chr1 28347928 28347995 trf 5 14.0 5 79 14 63 79 17 2 0 0.86 CAAAA chr1 28358204 28358579 trf 4 93.5 4 82 5 211 61 1 33 3 1.21 GAAA chr1 28359718 28359781 trf 2 31.5 2 83 0 63 42 0 9 47 1.36 AT chr1 28359719 28359792 trf 10 7.3 10 82 0 83 41 2 9 46 1.51 TATATATATG chr1 28363638 28363664 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 28364979 28365005 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 28366429 28366473 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 28367819 28367933 trf 3 38.0 3 94 0 201 64 0 35 0 1.00 AAG chr1 28367990 28368025 trf 2 17.5 2 93 0 61 0 0 45 54 0.99 TG chr1 28369716 28369760 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 28373126 28373232 trf 9 12.3 9 76 16 77 29 0 70 0 0.87 AGGGGAGAG chr1 28373126 28373251 trf 7 18.4 7 72 9 98 31 0 68 0 0.96 AGGGGAG chr1 28373164 28373252 trf 5 18.6 5 69 11 60 32 1 65 0 1.00 GGAGA chr1 28375178 28375212 trf 2 17.0 2 87 0 50 55 44 0 0 0.99 CA chr1 28375179 28375208 trf 10 2.9 10 100 0 58 58 41 0 0 0.98 ACACACACAA chr1 28377760 28377867 trf 2 53.5 2 86 0 151 2 2 43 50 1.31 TG chr1 28382784 28382832 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 28386916 28386993 trf 5 15.8 5 78 8 70 81 16 0 1 0.75 AAAAC chr1 28392072 28392097 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 28408021 28408056 trf 10 3.5 10 96 0 61 31 31 0 37 1.58 CTTCATACTA chr1 28409065 28409117 trf 3 17.0 3 96 4 95 67 0 0 32 0.91 AAT chr1 28413907 28413952 trf 5 9.6 5 83 11 60 2 0 17 80 0.82 TTTGT chr1 28415595 28415650 trf 6 9.3 6 86 11 78 0 0 14 85 0.60 GTTTTT chr1 28415596 28415648 trf 1 52.0 1 76 0 50 0 0 11 88 0.52 T chr1 28423448 28423481 trf 3 11.7 3 87 12 52 72 27 0 0 0.85 AAC chr1 28426547 28426627 trf 2 40.0 2 79 0 79 41 2 8 47 1.48 AT chr1 28426623 28426651 trf 12 2.3 12 100 0 56 42 7 0 50 1.30 ATATTATCTTAA chr1 28427471 28427508 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 28427728 28427787 trf 2 30.0 2 93 3 102 0 49 0 50 1.00 TC chr1 28430497 28430561 trf 3 21.3 3 87 6 94 32 0 67 0 0.91 GAG chr1 28431516 28431592 trf 9 8.6 9 78 16 70 81 18 0 0 0.69 AAAAACAAA chr1 28431518 28431587 trf 4 17.8 4 83 10 58 79 20 0 0 0.73 AAAC chr1 28432115 28432151 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 28433054 28433080 trf 3 8.7 3 100 0 52 69 30 0 0 0.89 AAC chr1 28434356 28434406 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 28439540 28439597 trf 2 28.5 2 92 0 87 3 0 45 50 1.18 GT chr1 28442750 28442792 trf 2 21.5 2 90 4 68 52 45 0 2 1.13 AC chr1 28442791 28442858 trf 2 33.5 2 96 0 125 49 0 50 0 1.00 AG chr1 28449244 28449278 trf 7 5.0 7 92 7 61 14 0 0 85 0.60 ATTTTTT chr1 28450194 28450219 trf 12 2.1 12 100 0 50 60 40 0 0 0.97 ACACACACACAA chr1 28458795 28458840 trf 8 5.6 8 91 0 72 40 20 37 2 1.65 AGAGCGCA chr1 28461104 28461144 trf 11 3.6 11 93 6 64 45 0 55 0 0.99 AGAGGAGAGGA chr1 28461199 28461233 trf 8 4.2 8 88 0 50 44 0 55 0 0.99 GAGGGGAA chr1 28462737 28462785 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 CT chr1 28462784 28462809 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 28463688 28463731 trf 5 8.6 5 82 7 52 74 20 4 0 1.00 CAAAA chr1 28468042 28468076 trf 11 2.9 12 86 8 52 0 47 0 52 1.00 CTCTTCTTCCTC chr1 28468060 28468132 trf 4 18.0 4 94 5 128 0 48 0 51 1.00 TCCT chr1 28468130 28468263 trf 2 68.0 2 90 4 209 0 53 0 46 1.00 CT chr1 28468434 28468483 trf 5 9.6 5 97 2 89 0 18 0 81 0.69 TTTCT chr1 28469168 28469212 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 28472064 28472106 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 28472192 28472230 trf 12 3.2 12 96 0 67 21 78 0 0 0.74 CCCCCAACCCCA chr1 28472192 28472230 trf 6 6.3 6 87 0 58 21 78 0 0 0.74 CCCCCA chr1 28472727 28472796 trf 2 34.5 2 100 0 138 50 0 49 0 1.00 AG chr1 28474962 28475154 trf 4 48.0 4 92 4 307 0 28 0 71 0.86 CTTT chr1 28477640 28477759 trf 2 59.5 2 94 0 211 2 0 49 47 1.14 TG chr1 28486217 28486299 trf 2 41.0 2 97 0 155 51 0 48 0 1.00 GA chr1 28486760 28486816 trf 2 28.0 2 80 7 60 3 1 44 50 1.29 GT chr1 28486761 28486822 trf 12 5.1 12 80 7 70 3 1 40 54 1.27 TGTGTGTGTGTT chr1 28488770 28488802 trf 5 6.8 5 89 10 50 0 15 0 84 0.63 TTTTC chr1 28489155 28489217 trf 2 31.0 2 93 0 106 50 3 0 46 1.17 TA chr1 28490332 28490385 trf 8 6.8 8 84 2 54 1 1 41 54 1.22 GTGTGTTT chr1 28490338 28490388 trf 2 25.0 2 89 0 73 2 2 44 52 1.24 TG chr1 28490388 28490454 trf 12 5.5 12 90 0 78 40 1 25 31 1.65 GTAATAGTAGTA chr1 28490392 28490454 trf 9 6.6 9 82 10 70 40 1 25 32 1.66 TAATAGTAG chr1 28490395 28490442 trf 3 15.7 3 95 0 85 36 0 29 34 1.58 TAG chr1 28496818 28496849 trf 2 15.5 2 93 0 53 0 0 48 51 1.00 GT chr1 28500542 28500577 trf 1 35.0 1 100 0 70 100 0 0 0 0.00 A chr1 28501010 28501061 trf 2 25.5 2 83 0 66 52 41 0 5 1.25 AC chr1 28507148 28507225 trf 2 38.5 2 93 0 118 2 44 2 50 1.29 TC chr1 28507224 28507288 trf 2 33.0 2 89 6 96 1 0 48 50 1.10 TG chr1 28510527 28510574 trf 2 23.5 2 95 0 85 2 0 46 51 1.13 TG chr1 28517369 28517400 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 28528412 28528437 trf 12 2.1 12 100 0 50 52 8 16 24 1.70 AAAAATGGTTCA chr1 28529163 28529216 trf 5 10.6 5 100 0 106 0 18 0 81 0.70 TTTCT chr1 28530435 28530493 trf 2 29.5 2 89 3 91 51 46 0 1 1.11 AC chr1 28543990 28544032 trf 10 4.3 10 82 14 52 0 0 19 80 0.70 TTTGTTGTTT chr1 28545312 28545372 trf 6 10.0 6 79 0 66 46 6 3 43 1.46 ATATAT chr1 28545312 28545372 trf 4 15.0 4 89 0 66 46 6 3 43 1.46 ATAT chr1 28552057 28552100 trf 2 21.0 2 90 4 68 46 48 2 2 1.27 CA chr1 28561251 28561343 trf 1 92.0 1 69 0 58 84 15 0 0 0.62 A chr1 28561254 28561344 trf 5 18.0 5 84 12 98 83 16 0 0 0.65 AAAAC chr1 28561415 28561456 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 28567627 28567662 trf 7 4.9 7 93 6 61 85 14 0 0 0.59 AAAAAAC chr1 28569835 28569911 trf 4 19.0 4 100 0 152 0 25 0 75 0.81 CTTT chr1 28571427 28571497 trf 5 13.8 5 83 5 70 0 0 28 71 0.86 TTTTG chr1 28578047 28578089 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 28578772 28578801 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 28578800 28578836 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 AG chr1 28579102 28579718 trf 6 103.7 6 83 5 347 53 0 46 0 1.03 GGAGAA chr1 28579153 28579678 trf 3 174.0 3 86 2 379 55 0 44 0 1.01 AGA chr1 28579676 28579721 trf 3 15.0 3 100 0 90 33 0 66 0 0.92 GAG chr1 28579720 28579795 trf 12 6.2 12 82 4 98 53 0 46 0 1.00 GAAAGAAGGAAG chr1 28579726 28579798 trf 4 18.2 4 89 2 110 51 0 48 0 1.00 AAGG chr1 28585659 28585703 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 AC chr1 28589637 28589820 trf 2 96.0 2 75 13 172 2 48 1 48 1.21 CT chr1 28592288 28592358 trf 8 9.1 8 90 6 83 82 17 0 0 0.66 AAACCAAA chr1 28592318 28592366 trf 5 9.4 5 86 4 51 87 12 0 0 0.54 AAAAC chr1 28592387 28592563 trf 3 58.7 3 97 0 334 67 0 32 0 0.96 AAG chr1 28593869 28593907 trf 7 5.9 7 82 17 55 0 0 13 86 0.56 TTTTGTT chr1 28601840 28601889 trf 6 8.8 6 80 14 61 85 14 0 0 0.59 AAAAAC chr1 28602915 28602974 trf 2 29.5 2 92 0 100 50 45 0 3 1.18 AC chr1 28610165 28610232 trf 4 16.8 4 93 0 98 44 1 4 49 1.31 TATA chr1 28613581 28613637 trf 5 11.6 5 98 1 98 0 16 0 83 0.64 TTTCT chr1 28617384 28617441 trf 2 29.0 2 82 3 71 3 0 43 52 1.18 GT chr1 28622095 28622138 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 28622773 28622825 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 28623174 28623217 trf 2 21.5 2 100 0 86 0 51 0 48 1.00 CT chr1 28623216 28623264 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 CA chr1 28627756 28627800 trf 2 22.0 2 90 0 70 47 2 2 47 1.27 TA chr1 28627895 28627966 trf 4 17.8 4 94 0 124 0 47 0 52 1.00 TCCT chr1 28628126 28628158 trf 3 10.7 3 100 0 64 68 0 0 31 0.90 AAT chr1 28628301 28628434 trf 11 10.9 12 76 13 114 85 12 1 0 0.70 CAAAAAAAAAAA chr1 28628302 28628434 trf 1 132.0 1 77 0 102 86 11 1 0 0.68 A chr1 28628567 28628700 trf 2 67.5 2 76 5 110 4 3 39 52 1.40 TG chr1 28631628 28631673 trf 2 22.5 2 100 0 90 0 51 0 48 1.00 CT chr1 28631631 28631688 trf 6 9.0 7 92 7 56 5 45 0 49 1.24 TCTCTCA chr1 28635877 28635907 trf 2 15.0 2 92 0 51 3 0 46 50 1.18 GT chr1 28638567 28638603 trf 8 4.5 8 85 0 54 63 0 36 0 0.94 AAGAAAGG chr1 28660010 28660038 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 28660390 28660466 trf 7 10.1 7 84 8 89 1 0 18 80 0.79 TGTTTTT chr1 28660416 28660468 trf 4 13.8 4 80 11 65 1 0 17 80 0.80 TTGT chr1 28666029 28666078 trf 2 25.0 2 87 4 73 2 48 0 48 1.12 TC chr1 28666077 28666149 trf 2 36.0 2 88 0 108 50 44 2 2 1.31 CA chr1 28667763 28667800 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 28672483 28672548 trf 6 10.8 6 98 0 85 41 49 0 9 1.35 ACACTC chr1 28673338 28673379 trf 2 20.5 2 94 0 73 0 2 46 51 1.14 TG chr1 28674633 28674675 trf 1 42.0 1 85 0 57 2 0 4 92 0.44 T chr1 28676090 28676129 trf 2 19.5 2 94 0 69 0 0 46 53 1.00 TG chr1 28677288 28677323 trf 3 11.7 3 87 0 52 40 0 31 28 1.57 GAT chr1 28683812 28683843 trf 2 15.5 2 93 0 53 45 0 3 51 1.17 TA chr1 28688320 28688350 trf 1 30.0 1 93 0 51 0 0 3 96 0.21 T chr1 28688676 28688755 trf 2 40.0 2 87 2 106 48 2 2 46 1.29 AT chr1 28688793 28688839 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 28699004 28699053 trf 4 12.5 4 86 4 73 77 20 2 0 0.87 AAAC chr1 28702466 28702506 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 28708160 28708185 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 28708234 28708325 trf 12 7.6 12 91 0 74 39 3 28 28 1.72 TAGATAGGTTGA chr1 28708246 28708333 trf 4 21.8 4 87 0 120 42 3 27 26 1.71 TAGA chr1 28708365 28708439 trf 2 37.0 2 94 0 130 0 48 2 48 1.15 CT chr1 28709090 28709198 trf 2 54.0 2 92 0 180 51 0 48 0 1.00 AG chr1 28709285 28709337 trf 9 5.8 9 88 0 68 48 11 36 3 1.58 CAAGAGAAG chr1 28711891 28711942 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 28713066 28713128 trf 2 31.0 2 90 0 97 3 0 46 50 1.17 TG chr1 28716918 28716950 trf 4 8.0 4 92 0 55 25 0 3 71 1.00 TTTA chr1 28717276 28717307 trf 7 4.6 7 96 4 55 9 16 0 74 1.07 TTCTTTA chr1 28717297 28717349 trf 6 8.7 6 77 8 52 0 28 1 69 0.99 TTCTCT chr1 28717299 28717351 trf 12 4.3 12 82 0 68 0 28 1 69 0.99 CTTTTTCTCTTC chr1 28717342 28717407 trf 4 16.2 4 100 0 130 0 24 0 75 0.81 TCTT chr1 28718592 28718633 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 28725140 28725188 trf 12 4.0 12 78 10 53 85 12 2 0 0.69 AAACAAAAAAAC chr1 28728376 28728433 trf 2 28.5 2 100 0 114 49 0 50 0 1.00 GA chr1 28736249 28736289 trf 9 4.8 9 76 17 50 47 0 52 0 1.00 AAGAGGAGG chr1 28746310 28746344 trf 4 8.5 4 93 0 50 47 5 0 47 1.26 TTAA chr1 28748053 28748089 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 28752895 28752930 trf 5 7.0 5 100 0 70 20 0 0 80 0.72 TTTAT chr1 28753320 28753380 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 28753388 28753440 trf 3 17.3 3 80 7 61 34 3 61 0 1.14 GAG chr1 28755815 28755865 trf 4 12.5 4 83 8 66 74 24 0 2 0.93 AAAC chr1 28757877 28757981 trf 6 17.7 6 88 4 158 48 31 0 19 1.56 ACTAAC chr1 28759114 28759163 trf 3 16.3 3 100 0 98 0 32 0 67 0.91 TCT chr1 28765146 28765201 trf 12 4.3 13 90 6 69 41 47 3 7 1.49 CACTACACACACA chr1 28765151 28765200 trf 2 23.5 2 87 8 71 44 48 2 4 1.33 CA chr1 28766034 28766082 trf 5 9.6 5 90 0 78 39 4 0 56 1.19 TATAT chr1 28775802 28775846 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 28778903 28778959 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 28787642 28787687 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 28787686 28787734 trf 2 24.0 2 95 0 87 47 2 50 0 1.12 AG chr1 28791154 28791197 trf 4 10.8 4 100 0 86 76 23 0 0 0.78 AAAC chr1 28793000 28793078 trf 4 19.5 4 91 0 129 50 26 0 23 1.50 CATA chr1 28793117 28793152 trf 10 3.5 10 96 0 61 48 5 0 45 1.26 TATATACATA chr1 28793117 28793162 trf 2 22.5 2 81 0 54 44 4 4 46 1.43 TA chr1 28794707 28794773 trf 10 6.7 10 89 1 89 43 0 4 51 1.22 ATATATATAT chr1 28794707 28794773 trf 4 16.8 4 90 3 89 43 0 4 51 1.22 ATAT chr1 28798349 28798394 trf 10 4.4 10 88 5 72 0 0 8 91 0.43 TTTTGTTTTT chr1 28798349 28798395 trf 1 46.0 1 82 0 56 0 0 8 91 0.43 T chr1 28798354 28798395 trf 12 3.6 12 87 12 68 0 0 7 92 0.38 TTTTTTTTGTTT chr1 28804713 28804743 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 28807500 28807566 trf 4 15.8 4 74 25 57 18 72 4 4 1.19 CCCA chr1 28810683 28810726 trf 12 3.6 12 74 0 50 4 41 9 44 1.57 TCTCTCTGTCTC chr1 28812552 28812612 trf 2 30.0 2 93 0 102 0 3 48 48 1.18 GT chr1 28817250 28817282 trf 12 2.5 13 90 10 57 59 0 6 34 1.23 AAAATTAGTTTAA chr1 28821151 28821200 trf 2 24.5 2 83 8 64 53 42 2 2 1.24 AC chr1 28823760 28823862 trf 8 13.4 8 79 13 54 53 6 37 1 1.39 GAGAGACA chr1 28823760 28823827 trf 2 35.0 2 82 14 79 53 0 43 2 1.16 GA chr1 28825004 28825156 trf 8 18.5 8 82 8 135 1 36 0 62 1.04 TTTCCTTC chr1 28825004 28825158 trf 4 38.5 4 82 2 121 1 35 0 62 1.03 TTTC chr1 28826474 28826536 trf 9 6.7 10 75 15 53 69 0 30 0 0.89 AGAGAAGAAA chr1 28826478 28826535 trf 5 11.8 5 83 7 64 71 0 28 0 0.86 AGAAA chr1 28826610 28826691 trf 5 16.2 5 100 0 162 39 0 60 0 0.97 GAGGA chr1 28827153 28827249 trf 2 48.0 2 86 0 129 48 44 4 2 1.33 CA chr1 28828173 28828250 trf 2 38.5 2 94 0 136 0 51 0 48 1.00 TC chr1 28828249 28828282 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 28833073 28833127 trf 3 18.3 3 92 3 92 1 0 29 68 1.00 TGT chr1 28840957 28840998 trf 4 10.2 4 100 0 82 51 0 24 24 1.49 AGAT chr1 28840995 28841040 trf 4 11.8 4 90 9 76 51 24 0 24 1.49 ATAC chr1 28842319 28842350 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 28844296 28844367 trf 6 12.8 6 96 3 100 83 16 0 0 0.66 AAAAAC chr1 28844297 28844366 trf 5 12.8 5 98 1 93 82 17 0 0 0.67 AAAAC chr1 28850049 28850098 trf 2 24.5 2 100 0 98 48 0 0 51 1.00 TA chr1 28851070 28851218 trf 4 37.0 4 94 0 179 25 32 0 42 1.55 CTAT chr1 28855342 28856274 trf 6 155.8 6 84 1 893 34 9 55 0 1.36 AGGAGG chr1 28859506 28859549 trf 5 8.6 5 100 0 86 81 18 0 0 0.69 AAACA chr1 28860656 28860691 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 28860691 28860731 trf 10 4.0 10 83 0 53 40 5 7 47 1.54 TATGCATATA chr1 28862814 28862845 trf 12 2.6 12 94 0 53 35 0 64 0 0.94 GGGAGAGGGAGA chr1 28864681 28864716 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 28865580 28865627 trf 4 12.0 4 95 4 87 74 0 0 25 0.82 AAAT chr1 28866228 28866316 trf 12 7.5 12 88 3 90 1 7 38 52 1.38 GTGTGTGTGTCT chr1 28866228 28866324 trf 8 11.8 8 80 12 70 1 8 38 52 1.39 GTGTGTCT chr1 28866228 28866304 trf 6 12.7 6 92 0 71 1 6 40 51 1.36 GTGTCT chr1 28866228 28866280 trf 2 26.0 2 96 0 95 0 1 48 50 1.12 GT chr1 28867155 28867222 trf 2 33.5 2 81 0 62 4 7 40 47 1.52 TG chr1 28868801 28868847 trf 2 23.0 2 95 0 83 0 0 47 52 1.00 GT chr1 28869742 28869789 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 28872184 28872209 trf 11 2.3 11 100 0 50 48 0 0 52 1.00 TAATTAATATT chr1 28874993 28875026 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 28875025 28875074 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 28875366 28875403 trf 2 18.5 2 94 0 65 51 45 0 2 1.15 AC chr1 28878233 28878280 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 28879128 28879166 trf 12 2.9 14 80 15 53 26 0 18 55 1.43 TATTTATGTATGTG chr1 28883001 28883051 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 28887851 28887910 trf 2 29.5 2 96 0 109 0 47 0 52 1.00 TC chr1 28889249 28889357 trf 8 14.4 8 71 21 65 0 35 9 54 1.39 CTCTCTTG chr1 28889276 28889336 trf 10 6.2 10 73 21 56 0 35 8 56 1.29 CTCTCTTGCT chr1 28890219 28890245 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 28891586 28891694 trf 8 14.4 8 71 21 65 0 35 9 54 1.39 CTCTCTTG chr1 28891613 28891673 trf 10 6.2 10 73 21 56 0 35 8 56 1.29 CTCTCTTGCT chr1 28892669 28892723 trf 4 13.5 4 100 0 108 0 25 0 74 0.83 CTTT chr1 28892720 28892756 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 28895737 28895783 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 28898027 28898060 trf 12 2.6 13 95 4 59 0 9 0 90 0.44 TTTTTTTTCTTTC chr1 28906562 28906673 trf 6 18.5 6 78 7 91 39 3 8 48 1.50 TATATA chr1 28906562 28906673 trf 4 27.8 4 80 7 91 39 3 8 48 1.50 TATA chr1 28910229 28910300 trf 12 6.2 12 75 20 64 2 32 0 64 1.08 TCTCTTTCCTTT chr1 28911246 28911291 trf 4 11.5 4 85 4 56 53 0 20 26 1.46 ATGA chr1 28912413 28912442 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 28915498 28915594 trf 10 9.4 10 73 12 61 50 14 1 34 1.50 TATACATACA chr1 28915514 28915609 trf 2 47.5 2 73 4 66 48 10 2 38 1.50 AT chr1 28916638 28916716 trf 4 19.5 4 89 5 122 0 50 0 50 1.00 TTCC chr1 28916706 28916776 trf 4 17.2 4 97 2 131 0 25 0 74 0.82 TTCT chr1 28916794 28916845 trf 1 51.0 1 84 0 66 0 5 1 92 0.46 T chr1 28918123 28918195 trf 12 6.0 12 77 6 65 83 5 9 1 0.86 AAAAGAAAAAAA chr1 28918130 28918192 trf 11 5.4 11 78 17 54 83 4 9 1 0.85 AAAAGAAAAAG chr1 28921860 28921951 trf 4 22.8 4 97 0 119 42 0 32 24 1.55 AGAT chr1 28921971 28922042 trf 6 11.8 6 100 0 142 33 0 32 33 1.58 TATAGG chr1 28924573 28924628 trf 2 27.5 2 89 7 85 50 45 3 0 1.19 AC chr1 28924752 28924817 trf 4 16.2 4 77 6 69 1 67 1 29 1.09 CCTC chr1 28925428 28925471 trf 4 10.8 4 100 0 86 74 0 0 25 0.82 AATA chr1 28925851 28925978 trf 6 21.3 6 87 4 141 0 42 7 49 1.32 TCTCTC chr1 28925851 28925978 trf 8 16.0 8 81 4 141 0 42 7 49 1.32 TCTCTCTC chr1 28927199 28927229 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 28930779 28930834 trf 5 11.0 5 100 0 110 0 0 20 80 0.72 GTTTT chr1 28933299 28933348 trf 2 24.5 2 95 0 89 2 0 46 51 1.12 TG chr1 28936313 28936363 trf 2 25.0 2 95 0 91 48 50 0 2 1.12 AC chr1 28936363 28936486 trf 10 12.3 10 86 0 165 43 0 6 49 1.34 TATATATATA chr1 28936363 28936486 trf 6 20.5 6 84 0 165 43 0 6 49 1.34 TATATA chr1 28936363 28936486 trf 4 30.8 4 88 0 165 43 0 6 49 1.34 TATA chr1 28943868 28943960 trf 4 22.8 4 86 6 132 1 44 0 54 1.07 TTCC chr1 28944021 28944071 trf 2 25.0 2 88 8 75 2 2 48 48 1.24 TG chr1 28945029 28945109 trf 2 40.5 2 93 2 126 2 1 51 45 1.22 GT chr1 28945108 28945172 trf 2 32.0 2 84 12 87 51 3 45 0 1.17 GA chr1 28946930 28947049 trf 5 22.4 5 78 14 100 3 3 15 77 1.04 TTTGT chr1 28946936 28947049 trf 9 11.6 10 72 18 55 3 3 15 76 1.05 TTGTTTTTTG chr1 28949524 28949563 trf 12 3.2 12 88 0 60 2 0 43 53 1.14 TGTGTGTTTGTG chr1 28949524 28949563 trf 2 19.5 2 83 0 51 2 0 43 53 1.14 TG chr1 28950764 28950802 trf 4 9.8 4 94 5 69 23 0 0 76 0.79 TTAT chr1 28951129 28951164 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 28953951 28953977 trf 4 6.5 4 100 0 52 23 23 0 53 1.46 TTCA chr1 28957023 28957077 trf 2 27.5 2 96 3 101 0 0 50 50 1.00 GT chr1 28957862 28957897 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 28959174 28959231 trf 2 28.5 2 100 0 114 50 49 0 0 1.00 AC chr1 28967569 28967633 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 28967634 28967669 trf 2 17.5 2 93 0 61 2 0 48 48 1.16 GT chr1 28972434 28972490 trf 7 8.0 7 74 7 51 28 10 5 55 1.56 TTATATC chr1 28973385 28973462 trf 4 19.2 4 94 0 118 51 3 23 20 1.63 ATAG chr1 28974851 28974904 trf 2 26.5 2 92 0 79 0 5 47 47 1.26 GT chr1 28975352 28975399 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 28978249 28978294 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 28978714 28978740 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 28982479 28982537 trf 2 29.0 2 89 0 89 50 5 44 0 1.24 GA chr1 28994428 28994456 trf 3 9.3 3 100 0 56 35 32 0 32 1.58 ATC chr1 28994719 28994752 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 28996182 28996255 trf 2 37.0 2 82 8 87 1 52 1 45 1.18 TC chr1 28996183 28996290 trf 12 8.5 12 77 11 63 1 56 0 41 1.17 CTCTCTCCCTCC chr1 28996185 28996287 trf 8 12.9 8 79 13 79 1 56 0 40 1.17 CTCTCTCC chr1 28996230 28996283 trf 4 12.8 4 76 7 52 1 64 0 33 1.05 CTCC chr1 29000574 29000620 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 29003831 29003898 trf 2 34.0 2 87 3 100 47 0 4 47 1.22 AT chr1 29006465 29006512 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 29007540 29007642 trf 9 11.3 9 82 4 116 0 57 0 40 1.12 CTCCTCCTC chr1 29007540 29007642 trf 6 17.0 6 82 4 116 0 57 0 40 1.12 CTCCTC chr1 29007576 29007642 trf 3 22.0 3 93 0 114 0 63 0 36 0.95 CTC chr1 29007640 29007744 trf 3 34.7 3 96 0 190 0 33 0 66 0.92 TCT chr1 29011540 29011634 trf 2 47.0 2 93 0 161 3 0 46 50 1.17 GT chr1 29015653 29015680 trf 12 2.2 12 100 0 54 44 7 14 33 1.73 AATGTCAGTTAA chr1 29018755 29018800 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 29022689 29023229 trf 7 76.5 8 67 25 157 52 0 44 2 1.18 AGAGAGAG chr1 29022891 29023708 trf 5 163.2 5 75 14 420 52 0 45 0 1.09 AAGAG chr1 29022920 29023723 trf 8 104.6 8 69 15 240 52 0 45 0 1.09 AGAGGAGA chr1 29023283 29023380 trf 12 8.6 12 77 11 82 62 0 37 0 0.95 AGAAGAGAAAAG chr1 29023713 29023764 trf 5 9.8 5 89 8 75 21 0 78 0 0.75 GGAGG chr1 29023943 29024000 trf 1 57.0 1 89 0 87 0 5 0 94 0.30 T chr1 29030818 29030843 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 29032454 29032497 trf 12 3.6 12 80 0 50 48 11 27 11 1.74 AGATAGACAGAC chr1 29032542 29032595 trf 2 26.5 2 78 0 52 5 5 43 45 1.51 GT chr1 29033364 29033396 trf 3 10.7 3 100 0 64 0 31 34 34 1.58 TGC chr1 29033560 29033632 trf 2 38.0 2 85 10 98 1 45 0 52 1.09 TC chr1 29034605 29034706 trf 10 10.1 10 86 0 139 4 0 42 52 1.23 TGTGTGTGTG chr1 29034605 29034706 trf 4 25.2 4 86 0 139 4 0 42 52 1.23 TGTG chr1 29035913 29035952 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 29044297 29044342 trf 3 15.7 3 82 17 60 71 0 0 28 0.87 AAT chr1 29047438 29047463 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 29052315 29052376 trf 2 30.5 2 100 0 122 0 0 49 50 1.00 TG chr1 29052375 29052425 trf 7 7.4 7 85 14 70 0 0 14 86 0.58 TTTGTTT chr1 29052381 29052425 trf 12 3.9 11 85 8 54 0 0 13 86 0.57 TTTTTTTTTTG chr1 29060422 29060447 trf 7 3.6 7 100 0 50 0 0 12 88 0.53 TTTTGTT chr1 29064697 29064761 trf 2 32.0 2 100 0 128 50 0 0 50 1.00 AT chr1 29070697 29070788 trf 2 45.5 2 87 0 128 43 49 2 4 1.34 CA chr1 29070791 29070857 trf 4 16.8 4 93 3 116 50 0 25 24 1.50 TAGA chr1 29071161 29071212 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 29075608 29075698 trf 4 22.8 4 88 6 139 50 0 24 25 1.50 ATAG chr1 29076926 29076960 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 29080623 29080668 trf 2 22.5 2 95 0 81 51 46 0 2 1.13 AC chr1 29081823 29081858 trf 2 17.5 2 93 0 61 51 45 2 0 1.16 AC chr1 29084149 29084227 trf 2 38.5 2 75 2 66 48 8 39 2 1.48 AG chr1 29084153 29084227 trf 10 7.7 10 75 13 75 48 9 39 2 1.50 AGAGAGAGAC chr1 29097878 29097935 trf 2 28.5 2 100 0 114 49 0 0 50 1.00 TA chr1 29097936 29097966 trf 2 15.0 2 92 0 51 46 0 50 3 1.18 GA chr1 29100944 29101052 trf 2 54.5 2 88 1 110 43 3 6 46 1.47 AT chr1 29101051 29101090 trf 2 19.5 2 83 0 51 51 7 41 0 1.31 AG chr1 29101051 29101090 trf 12 3.2 12 88 0 60 51 7 41 0 1.31 AGAGAGACAGAG chr1 29102199 29102233 trf 4 8.5 4 93 0 50 55 26 0 17 1.42 CATA chr1 29106653 29106721 trf 8 8.2 8 73 16 50 47 13 2 36 1.58 TATATACA chr1 29106674 29106715 trf 12 3.4 12 82 0 55 48 12 2 36 1.54 ATATACATATAT chr1 29111128 29111174 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 29114790 29114852 trf 2 31.0 2 100 0 124 50 0 50 0 1.00 AG chr1 29116955 29117004 trf 1 49.0 1 100 0 98 100 0 0 0 0.00 A chr1 29124813 29124882 trf 2 34.5 2 100 0 138 0 49 0 50 1.00 TC chr1 29136594 29136627 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 29140337 29140418 trf 2 40.5 2 84 0 72 43 4 6 45 1.50 AT chr1 29145268 29145328 trf 2 30.0 2 100 0 120 0 0 50 50 1.00 GT chr1 29149762 29149911 trf 4 37.5 4 84 9 153 0 52 1 45 1.14 TTCC chr1 29153553 29153595 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 29153595 29153657 trf 2 31.0 2 93 0 106 50 0 50 0 1.00 GA chr1 29156218 29156249 trf 3 10.7 3 93 6 55 70 29 0 0 0.87 AAC chr1 29161880 29161929 trf 2 24.5 2 100 0 98 51 0 0 48 1.00 AT chr1 29164260 29164344 trf 10 8.7 10 77 13 79 48 9 0 41 1.35 ACATATATAT chr1 29164278 29164344 trf 6 11.0 6 86 0 78 50 9 0 40 1.34 TATATA chr1 29164278 29164344 trf 4 16.5 4 87 0 78 50 9 0 40 1.34 TATA chr1 29173157 29173239 trf 2 42.5 2 89 7 125 48 1 50 0 1.08 AG chr1 29176133 29176176 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 29180717 29180751 trf 4 8.5 4 93 0 59 73 0 2 23 0.97 AAAT chr1 29180873 29181040 trf 2 84.0 2 75 5 124 2 38 6 51 1.43 TC chr1 29181072 29181110 trf 2 19.0 2 94 0 67 52 47 0 0 1.00 CA chr1 29183393 29183448 trf 2 27.5 2 88 0 74 0 7 41 50 1.30 TG chr1 29184080 29184129 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 29184128 29184153 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 29185659 29185707 trf 6 8.0 6 90 0 78 50 33 16 0 1.46 CAGACA chr1 29185660 29185769 trf 12 9.1 12 85 0 83 51 23 24 0 1.49 AGACACAGACAG chr1 29185700 29185803 trf 4 26.2 4 85 7 86 53 17 28 0 1.50 ACAG chr1 29188587 29188624 trf 1 37.0 1 91 0 56 2 2 0 94 0.36 T chr1 29190251 29190304 trf 3 17.7 3 96 0 97 66 0 1 32 1.03 AAT chr1 29191562 29191632 trf 4 17.5 4 96 0 131 51 0 25 22 1.48 GATA chr1 29194033 29194060 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 29194855 29194905 trf 3 17.0 3 95 4 93 32 0 0 68 0.90 ATT chr1 29197382 29197432 trf 4 12.8 4 82 4 57 2 4 16 78 1.00 TTTG chr1 29198624 29198665 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 29198943 29198981 trf 4 9.5 4 100 0 76 23 0 23 52 1.47 TTGA chr1 29201300 29201330 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 29207060 29207114 trf 2 27.0 2 100 0 108 50 0 0 50 1.00 TA chr1 29217830 29217874 trf 5 8.8 5 84 0 61 6 0 15 77 0.97 TTTTG chr1 29218968 29219015 trf 1 47.0 1 86 0 67 93 6 0 0 0.34 A chr1 29219165 29219253 trf 4 22.0 4 92 0 149 0 51 0 48 1.00 TCCT chr1 29220313 29220641 trf 6 54.2 6 87 10 319 50 0 49 0 1.00 AGGAGA chr1 29220845 29220888 trf 4 10.8 4 94 0 77 0 74 2 23 0.93 CCTC chr1 29220885 29220924 trf 4 9.8 4 88 0 60 0 46 0 53 1.00 CCTT chr1 29222215 29222296 trf 4 20.2 4 100 0 162 0 24 0 75 0.81 TTTC chr1 29223098 29223150 trf 8 6.2 8 82 8 50 86 11 0 1 0.65 CAAAAAAA chr1 29223099 29223130 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 29223395 29223436 trf 4 10.2 4 100 0 82 51 48 0 0 1.00 AACC chr1 29223437 29223470 trf 5 7.0 5 86 13 52 78 21 0 0 0.75 ACAAA chr1 29225256 29225286 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 29228222 29228262 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 TA chr1 29228223 29228284 trf 10 6.3 10 84 7 63 52 6 0 40 1.27 ATATATATAC chr1 29228322 29228367 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 29232717 29232764 trf 5 9.8 5 88 11 64 85 14 0 0 0.61 AAAAC chr1 29241259 29241311 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 29241310 29241355 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 29241452 29241571 trf 6 20.3 6 90 5 172 36 29 1 32 1.68 ATCTAC chr1 29241482 29241581 trf 6 16.5 6 96 0 90 37 28 1 33 1.64 TACATA chr1 29243193 29243408 trf 6 35.8 6 98 0 196 33 28 0 38 1.57 TATATC chr1 29246059 29246085 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 29252305 29252410 trf 7 15.1 7 71 16 76 2 0 18 79 0.86 TGTTTTT chr1 29252305 29252408 trf 12 8.7 12 79 11 106 2 0 18 78 0.87 TGTTTTTTGTTT chr1 29252311 29252370 trf 5 11.4 5 80 20 68 0 0 16 83 0.66 TTGTT chr1 29259821 29259879 trf 2 29.0 2 96 0 107 50 48 0 1 1.11 CA chr1 29263655 29263692 trf 2 18.5 2 100 0 74 0 48 0 51 1.00 TC chr1 29263691 29263738 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 29263737 29263762 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 29263761 29263797 trf 6 6.0 6 86 0 54 33 0 16 50 1.46 TATGTA chr1 29264202 29264242 trf 2 20.0 2 89 0 62 47 47 5 0 1.24 CA chr1 29264879 29264915 trf 12 3.0 12 87 0 54 13 72 2 11 1.23 TCCCCCACCCAC chr1 29269528 29269566 trf 2 20.0 2 89 10 62 50 0 0 50 1.00 AT chr1 29280437 29280515 trf 2 38.5 2 87 2 102 50 7 0 42 1.31 AT chr1 29281601 29281626 trf 12 2.1 12 100 0 50 52 32 0 16 1.44 ATACATACACAC chr1 29285478 29285537 trf 2 29.5 2 89 0 82 1 5 45 47 1.34 GT chr1 29290041 29290082 trf 1 41.0 1 100 0 82 0 0 0 100 0.00 T chr1 29295774 29295883 trf 4 27.2 4 85 3 58 38 2 58 0 1.12 AGGG chr1 29297065 29297114 trf 8 6.1 8 90 0 71 48 12 36 2 1.52 AGAGAGAC chr1 29299255 29299314 trf 10 5.3 10 74 21 55 11 5 38 44 1.63 TGTATGTGTG chr1 29304357 29304422 trf 2 34.0 2 87 9 100 49 1 0 49 1.10 AT chr1 29305087 29305143 trf 2 28.0 2 100 0 112 50 50 0 0 1.00 CA chr1 29306557 29306592 trf 2 17.5 2 87 0 52 0 0 45 54 0.99 GT chr1 29307026 29307128 trf 2 51.0 2 98 0 195 50 49 0 0 1.00 CA chr1 29311053 29311084 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 29312195 29312395 trf 5 40.0 5 98 0 247 51 0 48 0 1.00 GGAAA chr1 29315673 29315707 trf 3 11.3 3 93 0 59 64 0 2 32 1.08 AAT chr1 29317692 29317740 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 29317739 29317822 trf 2 41.5 2 97 0 157 50 0 0 49 1.00 TA chr1 29318389 29318546 trf 8 19.4 8 80 2 107 0 42 7 50 1.31 CTCTCTGT chr1 29318398 29318546 trf 6 24.7 6 91 0 179 0 42 7 50 1.30 TCTCTC chr1 29319269 29319299 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 TA chr1 29319489 29319560 trf 2 35.5 2 92 0 115 53 45 0 1 1.09 AC chr1 29319567 29319632 trf 2 32.5 2 96 0 121 52 0 47 0 1.00 AG chr1 29328913 29328980 trf 5 13.0 5 82 14 75 0 0 20 79 0.74 GTTTT chr1 29330360 29330398 trf 4 9.8 4 94 5 69 0 0 21 78 0.74 TTTG chr1 29331632 29331677 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 29341258 29341302 trf 9 4.9 9 91 0 52 63 6 4 25 1.38 AACAATAAT chr1 29347583 29347637 trf 2 27.0 2 92 0 90 50 46 0 3 1.19 CA chr1 29347632 29347729 trf 8 12.4 8 78 12 67 50 15 34 0 1.44 ACACAGAG chr1 29347636 29347719 trf 8 10.4 8 85 0 76 50 12 37 0 1.40 AGAGAGAG chr1 29347638 29347732 trf 6 14.7 6 86 12 98 50 13 36 0 1.43 AGAGAC chr1 29349867 29349898 trf 5 6.2 5 100 0 62 80 0 19 0 0.71 AAAAG chr1 29350150 29350206 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 29350205 29350240 trf 4 8.8 4 100 0 70 0 74 0 25 0.82 CCTC chr1 29350237 29350471 trf 12 19.3 12 79 9 109 2 35 1 61 1.16 CCTTCCTTCTTT chr1 29350237 29350289 trf 4 13.0 4 100 0 104 0 50 0 50 1.00 CCTT chr1 29350286 29350413 trf 4 32.2 4 85 6 170 1 27 0 70 1.02 CTTT chr1 29350747 29350774 trf 4 6.8 4 100 0 54 22 0 0 77 0.76 TTTA chr1 29354395 29354424 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 29354509 29354557 trf 4 12.5 4 91 8 82 54 45 0 0 0.99 AACC chr1 29354554 29354580 trf 4 6.5 4 100 0 52 73 26 0 0 0.84 CAAA chr1 29356849 29356902 trf 2 26.5 2 100 0 106 49 0 50 0 1.00 GA chr1 29358157 29358235 trf 2 39.5 2 94 2 140 51 48 0 0 1.00 AC chr1 29361272 29361319 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 29361619 29361748 trf 2 64.5 2 87 0 87 40 45 5 8 1.58 AC chr1 29362146 29362176 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 TC chr1 29362175 29362233 trf 2 29.0 2 96 0 107 50 48 0 1 1.11 CA chr1 29365651 29365782 trf 4 33.2 4 81 9 135 46 0 26 25 1.58 GATA chr1 29366336 29366449 trf 12 9.4 12 83 7 124 86 13 0 0 0.56 AAAAAAAAAAAC chr1 29366336 29366449 trf 8 14.5 8 83 12 130 86 13 0 0 0.56 AAAAAACA chr1 29366336 29366427 trf 1 91.0 1 77 0 92 89 10 0 0 0.50 A chr1 29381503 29381565 trf 1 62.0 1 81 0 70 90 8 1 0 0.52 A chr1 29381503 29381638 trf 7 19.7 7 75 11 95 81 17 0 0 0.78 AAAAACA chr1 29381575 29381638 trf 12 5.6 11 87 9 92 82 15 0 1 0.74 CAAAAAACAAA chr1 29383012 29383043 trf 4 7.8 4 92 0 53 70 25 3 0 1.02 ACAA chr1 29386129 29386181 trf 4 13.0 4 100 0 104 50 25 0 25 1.50 TACA chr1 29390602 29390628 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 29393294 29393352 trf 2 29.0 2 89 6 91 46 50 1 1 1.22 CA chr1 29399474 29399517 trf 4 10.8 4 100 0 86 51 23 25 0 1.49 AGAC chr1 29399839 29399887 trf 6 8.0 6 100 0 96 83 0 16 0 0.65 AAAAAG chr1 29401212 29401293 trf 2 40.5 2 94 0 144 48 0 51 0 1.00 AG chr1 29406523 29406570 trf 2 23.5 2 100 0 94 51 0 0 48 1.00 AT chr1 29414269 29414326 trf 2 28.5 2 85 0 69 7 1 43 47 1.40 TG chr1 29417437 29417489 trf 3 17.3 3 95 0 95 65 0 1 32 1.04 ATA chr1 29422442 29422483 trf 4 9.8 4 97 2 64 78 21 0 0 0.76 AAAC chr1 29427808 29427858 trf 3 16.7 3 83 8 57 64 4 2 30 1.23 AAT chr1 29439831 29439875 trf 5 8.8 5 100 0 88 0 0 18 81 0.68 TTTTG chr1 29445163 29445198 trf 2 17.5 2 100 0 70 0 51 0 48 1.00 CT chr1 29446414 29446464 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 29447102 29447129 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 29457284 29457327 trf 2 21.5 2 95 0 77 48 2 0 48 1.14 TA chr1 29457793 29457830 trf 4 9.2 4 93 0 56 70 0 5 24 1.08 AAAT chr1 29458640 29458704 trf 2 32.0 2 96 0 119 48 0 51 0 1.00 AG chr1 29459548 29459585 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 29461135 29461179 trf 4 11.0 4 95 0 79 77 22 0 0 0.77 CAAA chr1 29462297 29462349 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 29462609 29462688 trf 12 6.6 12 80 0 86 1 39 8 50 1.42 TCTCTCTGTCTC chr1 29462617 29462692 trf 2 37.5 2 82 5 80 0 41 8 50 1.32 TC chr1 29467210 29467345 trf 4 33.8 4 91 3 128 16 22 8 52 1.70 TCTA chr1 29467769 29467915 trf 3 48.7 3 85 2 186 2 60 0 36 1.16 TCC chr1 29468083 29468217 trf 12 11.5 12 67 25 58 2 44 0 52 1.16 TCTTCTTCCTCT chr1 29468269 29468337 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 29474276 29474794 trf 3 169.7 3 90 4 246 0 46 0 51 1.11 TTC chr1 29474795 29475125 trf 3 107.7 3 85 4 291 0 54 1 42 1.15 CTC chr1 29478910 29478958 trf 2 24.5 2 95 4 89 47 0 0 52 1.00 TA chr1 29481943 29481979 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 29483256 29483282 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 TA chr1 29483489 29483569 trf 4 20.0 4 94 0 79 0 58 0 41 0.98 CTTC chr1 29489114 29489164 trf 2 25.0 2 95 0 91 48 0 2 50 1.12 AT chr1 29490381 29490447 trf 2 33.0 2 81 0 78 3 1 42 53 1.25 TG chr1 29495158 29495184 trf 11 2.4 11 100 0 52 76 7 7 7 1.15 AAAAAAATCAG chr1 29495190 29495217 trf 6 4.5 6 100 0 54 85 14 0 0 0.61 AAAAAC chr1 29496403 29496441 trf 4 9.5 4 100 0 76 23 0 0 76 0.79 TTTA chr1 29496960 29497001 trf 6 7.0 6 91 5 66 82 14 2 0 0.76 CAAAAA chr1 29497020 29497051 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 29498821 29498878 trf 2 28.5 2 100 0 114 0 0 49 50 1.00 TG chr1 29507912 29507979 trf 4 16.8 4 80 6 64 26 31 0 41 1.56 TATC chr1 29513018 29513053 trf 10 3.5 10 88 0 52 22 0 25 51 1.48 TGTATATATG chr1 29513925 29513959 trf 8 4.2 8 84 0 50 47 14 17 20 1.83 AGATACAT chr1 29516472 29516524 trf 10 4.9 11 80 17 65 80 19 0 0 0.71 AAAAACAAAAC chr1 29520276 29520340 trf 2 32.0 2 96 0 119 0 48 0 51 1.00 TC chr1 29520339 29520383 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 29520380 29520419 trf 5 7.8 5 100 0 78 79 20 0 0 0.73 ACAAA chr1 29521082 29521141 trf 5 11.0 5 82 7 55 0 3 27 69 1.04 TTTTG chr1 29523361 29523388 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 29533102 29533151 trf 8 6.4 8 80 15 59 51 38 0 10 1.36 ACACACAT chr1 29533102 29533141 trf 2 19.5 2 83 0 51 48 43 0 7 1.31 AC chr1 29533179 29533222 trf 2 21.0 2 85 4 59 4 2 44 48 1.36 GT chr1 29533463 29533546 trf 8 9.6 8 71 19 51 39 1 6 53 1.34 TATATTTA chr1 29542250 29542297 trf 3 15.7 3 100 0 94 34 0 0 65 0.93 ATT chr1 29544303 29544356 trf 4 13.5 4 96 4 99 24 0 0 75 0.80 TTAT chr1 29545342 29545457 trf 4 28.8 4 96 0 212 0 47 1 50 1.11 TTCC chr1 29545460 29545627 trf 2 84.5 2 95 2 302 0 49 0 50 1.00 TC chr1 29553053 29553097 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 29553145 29553226 trf 2 40.5 2 84 0 99 48 4 3 43 1.42 AT chr1 29567222 29567271 trf 2 24.5 2 95 0 89 53 46 0 0 1.00 AC chr1 29572375 29572406 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 29572903 29572949 trf 2 23.0 2 81 0 56 52 43 2 2 1.25 AC chr1 29572913 29572949 trf 10 3.6 10 96 0 63 55 44 0 0 0.99 ACACACAAAC chr1 29576578 29576608 trf 12 2.6 11 90 10 51 0 16 0 83 0.65 TTTTTTTTTCC chr1 29576623 29576655 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 29588228 29588281 trf 2 27.0 2 96 3 99 50 0 0 49 1.00 AT chr1 29595512 29595560 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 CT chr1 29595582 29595621 trf 2 19.5 2 100 0 78 48 0 51 0 1.00 GA chr1 29595620 29595653 trf 2 16.5 2 93 0 57 0 3 48 48 1.17 GT chr1 29597407 29597449 trf 4 10.8 4 94 5 77 73 0 0 26 0.83 ATAA chr1 29597465 29597490 trf 12 2.1 12 100 0 50 16 8 16 60 1.58 TGCTTGTATTAT chr1 29600983 29601100 trf 5 23.4 5 94 0 198 36 0 63 0 0.95 GAGGA chr1 29601700 29601760 trf 4 15.2 4 92 3 104 51 0 23 25 1.48 ATAG chr1 29602965 29603008 trf 4 10.8 4 100 0 86 51 0 23 25 1.49 ATAG chr1 29603020 29603088 trf 5 13.6 5 95 0 118 58 19 0 22 1.39 ATACA chr1 29616380 29616427 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 29623279 29623345 trf 5 12.6 5 86 10 64 0 1 21 77 0.85 TTTGT chr1 29623287 29623348 trf 6 10.8 6 87 5 58 0 1 21 77 0.86 TTTGTT chr1 29624518 29624615 trf 5 19.8 5 88 3 90 3 25 0 71 1.01 TTTTC chr1 29634594 29634619 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 29638056 29638103 trf 7 6.4 7 79 16 51 80 17 0 2 0.80 AAAAAAC chr1 29638787 29638854 trf 6 10.8 6 82 6 62 52 31 0 16 1.44 ACATAC chr1 29638851 29638921 trf 2 35.5 2 94 2 106 47 0 4 48 1.21 AT chr1 29660218 29660256 trf 1 38.0 1 91 0 58 0 2 2 94 0.35 T chr1 29664526 29664557 trf 11 2.8 11 95 0 53 67 0 0 32 0.91 AAAAATTATAT chr1 29666797 29666851 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 29668725 29668762 trf 6 6.5 6 81 12 51 83 16 0 0 0.64 AAAAAC chr1 29668847 29668912 trf 1 65.0 1 78 0 67 89 0 10 0 0.49 A chr1 29674007 29674167 trf 4 39.8 4 86 3 214 1 26 3 68 1.14 TCTT chr1 29674717 29674766 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 29674891 29674917 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 29680088 29680128 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 29684295 29684325 trf 11 2.7 11 94 0 51 3 16 0 80 0.85 TTTTTCTTTCA chr1 29684636 29684677 trf 12 3.4 12 89 0 55 80 19 0 0 0.71 AAAACAAACAAA chr1 29684637 29684668 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 29689430 29689479 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 29691179 29691204 trf 12 2.1 12 100 0 50 0 8 8 84 0.79 TTGCTTTTTTTT chr1 29692848 29692881 trf 12 2.9 11 91 8 57 87 12 0 0 0.53 AAAAAAACAAA chr1 29693514 29693636 trf 3 40.7 3 96 0 226 65 0 34 0 0.93 AAG chr1 29702813 29702893 trf 2 40.0 2 88 0 97 6 0 41 52 1.27 GT chr1 29709839 29709880 trf 1 41.0 1 100 0 82 100 0 0 0 0.00 A chr1 29709914 29709972 trf 7 8.3 7 71 21 50 39 1 1 56 1.19 TAATTAT chr1 29710028 29710067 trf 12 3.4 11 83 13 51 0 10 2 87 0.65 TTTTCTTTTTT chr1 29710028 29710064 trf 8 4.5 8 89 0 54 0 11 2 86 0.68 TTTTCTTT chr1 29713510 29713580 trf 2 34.5 2 78 18 65 47 2 4 45 1.37 TA chr1 29714998 29715039 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 29718852 29718915 trf 1 63.0 1 77 0 54 87 11 0 1 0.62 A chr1 29718858 29718915 trf 7 7.9 7 83 14 71 87 12 0 0 0.54 AAAAAAC chr1 29720856 29720892 trf 12 3.0 12 91 0 54 11 0 69 19 1.18 GTGGGTGGGGGA chr1 29722770 29722804 trf 1 34.0 1 87 0 50 94 5 0 0 0.32 A chr1 29724549 29724594 trf 2 22.5 2 90 0 72 48 48 0 2 1.13 CA chr1 29726973 29727031 trf 2 29.0 2 89 0 80 1 5 43 50 1.35 GT chr1 29727454 29727518 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 29729809 29729873 trf 4 16.2 4 96 3 121 50 0 25 25 1.50 AGAT chr1 29729989 29730037 trf 2 24.5 2 95 4 89 50 50 0 0 1.00 CA chr1 29733603 29733632 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TTGT chr1 29734887 29734943 trf 2 28.5 2 96 3 105 0 0 50 50 1.00 TG chr1 29735133 29735158 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 29735157 29735204 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 29737201 29737233 trf 12 2.7 12 95 0 55 0 25 68 6 1.12 GGCGGTGGCGGC chr1 29743063 29743104 trf 3 13.7 3 100 0 82 34 0 0 65 0.93 TAT chr1 29744035 29744063 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 29749460 29749517 trf 2 28.5 2 96 0 105 52 47 0 0 1.00 AC chr1 29751268 29751298 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 29752397 29752428 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 29757598 29757642 trf 8 5.5 8 88 0 61 38 0 11 50 1.39 TATGTATA chr1 29757602 29757641 trf 2 19.5 2 89 0 51 41 0 7 51 1.31 TA chr1 29764281 29764306 trf 9 2.8 9 100 0 50 60 0 8 32 1.26 AATAATAGT chr1 29766996 29767040 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 ATTT chr1 29767393 29767436 trf 2 22.0 2 95 4 79 0 0 48 51 1.00 TG chr1 29770590 29770619 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 29772247 29772323 trf 4 19.0 4 100 0 152 50 0 25 25 1.50 GATA chr1 29775441 29775577 trf 6 22.3 6 94 3 236 1 63 0 33 1.08 CTCCCT chr1 29776937 29776966 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 29787108 29787134 trf 10 2.6 10 100 0 52 19 69 0 11 1.18 CCCACTCCAC chr1 29789566 29789605 trf 3 13.0 3 100 0 78 33 0 0 66 0.92 ATT chr1 29792132 29792171 trf 4 9.2 4 88 5 51 0 0 20 79 0.73 TGTT chr1 29793537 29793572 trf 11 3.1 11 92 8 61 0 0 20 80 0.72 TGTTTGTTTTT chr1 29793537 29793569 trf 4 8.2 4 93 6 57 0 0 21 78 0.76 TGTT chr1 29796491 29796557 trf 5 12.8 5 88 6 96 78 18 1 1 0.90 AAAAC chr1 29800666 29800734 trf 12 5.8 12 86 5 86 82 17 0 0 0.67 AAAAAAACAAAC chr1 29800670 29800734 trf 4 16.5 4 88 6 78 81 18 0 0 0.70 AAAC chr1 29803959 29804067 trf 2 54.0 2 92 0 180 50 48 1 0 1.11 AC chr1 29804483 29804610 trf 5 25.2 5 91 1 209 0 57 1 40 1.08 CTCTC chr1 29804637 29804711 trf 6 12.3 6 91 5 114 1 45 0 52 1.09 TCTCTC chr1 29804637 29804711 trf 4 18.5 4 88 5 114 1 45 0 52 1.09 TCTC chr1 29806488 29806531 trf 4 10.8 4 100 0 86 0 0 23 76 0.78 TTTG chr1 29817508 29817538 trf 2 15.0 2 92 0 51 0 0 46 53 1.00 GT chr1 29818392 29818435 trf 7 6.1 7 86 0 50 53 4 0 41 1.21 ATAAATT chr1 29818448 29818516 trf 7 10.6 7 76 17 58 47 5 1 45 1.36 ATATATC chr1 29822903 29822996 trf 4 23.2 4 97 0 177 0 49 0 50 1.00 CCTT chr1 29823006 29823080 trf 4 18.5 4 100 0 148 0 25 0 74 0.82 TCTT chr1 29823086 29823112 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 CT chr1 29832977 29833042 trf 3 21.7 3 100 0 130 0 32 0 67 0.91 TTC chr1 29833043 29833081 trf 3 12.7 3 88 0 58 0 60 0 39 0.97 CTC chr1 29841252 29841282 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 29841479 29841505 trf 12 2.2 12 100 0 52 0 15 23 61 1.33 TTTTTTGGGCCT chr1 29842485 29842542 trf 8 7.1 8 84 7 53 0 3 15 80 0.84 TTTTGTTT chr1 29842506 29842546 trf 4 9.8 4 84 15 55 0 2 20 77 0.88 TTTG chr1 29844994 29845036 trf 2 21.0 2 95 0 75 50 47 2 0 1.14 CA chr1 29845181 29845218 trf 2 18.5 2 100 0 74 48 0 0 51 1.00 TA chr1 29845726 29845754 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 29848210 29848258 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 TA chr1 29852598 29852624 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 29854399 29854447 trf 2 24.0 2 95 0 87 50 2 0 47 1.12 AT chr1 29856525 29856577 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 29857955 29857991 trf 12 3.0 12 92 8 56 8 2 72 16 1.21 GTGGGTGGGGGA chr1 29859765 29859822 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 29860598 29860637 trf 5 7.8 5 100 0 78 17 0 0 82 0.68 TTTTA chr1 29864969 29865043 trf 2 37.0 2 100 0 148 50 0 50 0 1.00 GA chr1 29870703 29870739 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 29872779 29872814 trf 4 9.0 4 93 6 63 0 0 22 77 0.78 GTTT chr1 29875989 29876028 trf 4 9.5 4 89 10 53 0 0 20 79 0.73 TTTG chr1 29876949 29877047 trf 4 24.5 4 93 0 124 45 4 4 45 1.41 ATAT chr1 29878556 29878701 trf 5 29.0 5 99 0 254 0 42 0 57 0.98 TTTCC chr1 29878681 29878824 trf 12 13.0 10 96 2 133 0 39 0 60 0.97 CTTCTCTTCT chr1 29878701 29878825 trf 3 44.0 3 87 12 192 0 35 0 64 0.94 CTT chr1 29881406 29881467 trf 4 15.0 4 83 10 63 0 0 22 77 0.78 GTTT chr1 29900824 29900868 trf 2 22.0 2 95 0 79 50 2 47 0 1.13 GA chr1 29901434 29901527 trf 12 7.4 12 70 11 53 52 32 2 12 1.51 ACACATATACAC chr1 29901486 29901525 trf 8 4.9 8 87 0 51 53 35 0 10 1.35 ACACACAT chr1 29907809 29908206 trf 12 33.2 12 76 5 275 16 49 1 32 1.54 CTACATCCTCCC chr1 29909691 29909729 trf 6 6.5 6 90 6 60 81 0 18 0 0.69 AAAAAG chr1 29910635 29910712 trf 5 15.6 5 89 8 122 0 1 20 77 0.83 TTGTT chr1 29912323 29912470 trf 6 24.8 6 95 2 118 0 68 0 31 0.90 CTCTCC chr1 29915082 29915119 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 29915654 29915697 trf 6 7.3 6 84 5 61 34 16 0 48 1.46 ATATCT chr1 29915868 29915924 trf 2 28.0 2 100 0 112 50 0 0 50 1.00 TA chr1 29915923 29916023 trf 2 50.5 2 74 9 80 53 4 40 3 1.35 AG chr1 29916068 29916123 trf 8 6.9 8 91 0 65 50 14 16 18 1.77 ATAGATAC chr1 29916476 29916560 trf 4 20.5 4 80 4 96 0 65 0 34 0.93 CTCC chr1 29916865 29916891 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 29919013 29919064 trf 5 9.8 5 83 8 66 43 1 15 39 1.58 ATATG chr1 29919028 29919066 trf 12 3.3 12 92 7 62 44 0 13 42 1.43 ATATGATATGAT chr1 29924372 29924401 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 29929442 29929570 trf 3 43.0 3 93 1 222 64 0 35 0 0.94 GAA chr1 29937915 29937941 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 29942514 29942571 trf 3 19.7 3 85 3 73 0 3 28 68 1.06 TTG chr1 29958878 29958931 trf 2 26.5 2 92 0 88 3 49 0 47 1.19 TC chr1 29959278 29959331 trf 12 4.7 12 84 11 67 5 18 0 75 0.99 TTTCTTTTACTT chr1 29959287 29959342 trf 6 10.0 6 79 13 57 1 16 0 81 0.77 CTTTTT chr1 29960081 29960129 trf 3 15.7 3 86 4 69 62 0 4 33 1.14 ATA chr1 29969366 29969417 trf 4 12.8 4 100 0 102 50 0 25 23 1.49 AGAT chr1 29974764 29974809 trf 2 22.5 2 95 0 81 0 51 0 48 1.00 TC chr1 29975242 29975294 trf 5 11.4 5 87 8 60 0 1 21 76 0.87 TTGTT chr1 29975246 29975293 trf 9 5.3 9 82 12 62 0 2 21 76 0.89 TTTGTTTTG chr1 29981861 29981897 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 29983414 29983446 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 29988448 29988503 trf 2 27.5 2 96 0 101 49 49 0 1 1.11 AC chr1 29997327 29997360 trf 5 6.4 5 96 3 57 78 21 0 0 0.75 AACAA chr1 30000702 30000840 trf 2 71.5 2 88 7 205 0 46 0 53 1.00 TC chr1 30003649 30003717 trf 2 37.0 2 73 16 58 47 1 1 50 1.19 AT chr1 30006345 30006385 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 30010722 30010800 trf 3 26.0 3 74 10 70 33 30 5 30 1.79 TCA chr1 30012349 30012566 trf 10 20.9 10 94 2 211 0 48 0 50 1.07 CTCTTCTCTT chr1 30012703 30012789 trf 4 21.5 4 95 0 154 73 0 26 0 0.84 AAAG chr1 30017099 30017128 trf 12 2.3 13 94 5 51 68 0 3 27 1.05 AAAATATGTAATA chr1 30021859 30021946 trf 6 14.5 6 70 20 58 0 3 17 79 0.87 TTTGTT chr1 30028284 30028336 trf 2 26.0 2 96 0 95 0 51 0 48 1.00 CT chr1 30028338 30028396 trf 5 11.8 5 79 17 68 1 0 18 79 0.82 TTTTG chr1 30033277 30033328 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 30034009 30034052 trf 2 21.5 2 85 0 59 4 0 44 51 1.22 GT chr1 30036139 30036185 trf 1 46.0 1 91 0 65 4 0 2 93 0.41 T chr1 30052238 30052277 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 30054542 30054576 trf 4 8.5 4 93 0 59 26 0 26 47 1.53 TGTA chr1 30054610 30054660 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 CT chr1 30054659 30054699 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 30059396 30059781 trf 2 195.0 2 78 2 348 6 3 44 44 1.47 TG chr1 30060667 30060698 trf 4 7.8 4 92 0 53 0 3 22 74 0.96 TTTG chr1 30062743 30062819 trf 4 18.8 4 91 2 125 25 2 0 72 0.98 ATTT chr1 30063570 30063658 trf 4 22.0 4 97 0 167 73 0 26 0 0.83 GAAA chr1 30064807 30064836 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 30073413 30073438 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 30080482 30080562 trf 2 40.5 2 85 7 101 48 5 1 45 1.32 AT chr1 30081158 30081197 trf 2 19.5 2 100 0 78 51 0 0 48 1.00 AT chr1 30081197 30081241 trf 2 22.0 2 95 0 79 2 0 47 50 1.13 GT chr1 30082437 30082536 trf 5 20.0 5 96 2 155 64 35 0 0 0.94 CAAAC chr1 30099001 30099028 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 30101855 30101910 trf 2 27.5 2 84 0 74 52 3 43 0 1.18 GA chr1 30108032 30108222 trf 2 101.0 2 75 19 178 46 1 50 2 1.20 AG chr1 30114501 30114615 trf 3 37.3 3 94 3 201 0 34 0 64 0.99 TTC chr1 30120108 30120184 trf 12 6.1 12 85 8 62 67 0 32 0 0.91 AAGGAAGGAAAG chr1 30120108 30120138 trf 4 7.5 4 92 0 51 56 0 43 0 0.99 AAGG chr1 30120141 30120251 trf 4 28.2 4 78 12 104 68 0 30 0 0.96 AGAA chr1 30120381 30120450 trf 6 11.5 6 96 0 129 50 14 34 0 1.43 AGAGAC chr1 30124399 30124445 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 30131560 30131693 trf 4 33.0 4 93 1 212 0 28 0 71 0.86 CTTT chr1 30133598 30133674 trf 4 18.8 4 91 2 116 50 2 23 23 1.62 ATAG chr1 30133654 30133732 trf 6 13.0 6 86 5 68 39 0 25 34 1.56 ATAGAT chr1 30135077 30135109 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 30138444 30138511 trf 6 12.0 6 84 15 99 49 0 17 32 1.48 AGATAT chr1 30138622 30138660 trf 5 7.6 5 100 0 76 21 0 0 78 0.74 TATTT chr1 30148092 30148184 trf 10 8.9 11 89 4 99 45 3 4 46 1.39 ATATATATATG chr1 30148106 30148185 trf 2 39.5 2 92 0 131 48 1 2 48 1.23 AT chr1 30148182 30148215 trf 10 3.3 10 91 0 57 51 39 0 9 1.34 ATACACACAC chr1 30150250 30150433 trf 6 29.8 6 85 4 114 49 0 23 26 1.54 GATATA chr1 30150281 30150432 trf 12 12.4 12 91 2 185 50 0 27 21 1.49 AGATAGAGATAG chr1 30150309 30150350 trf 4 10.2 4 100 0 82 51 0 24 24 1.49 ATAG chr1 30158815 30158851 trf 4 9.0 4 93 0 63 72 0 25 2 0.98 AAGA chr1 30158867 30158939 trf 4 18.0 4 97 0 135 26 0 73 0 0.83 GAGG chr1 30159549 30159588 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 30170791 30170844 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 30174001 30174096 trf 6 15.8 6 95 0 163 50 14 0 34 1.43 ATATAC chr1 30174346 30174443 trf 2 48.0 2 80 6 106 45 5 3 46 1.41 TA chr1 30178929 30178959 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 30179647 30179727 trf 6 13.3 6 80 5 63 0 38 10 51 1.36 TCTCTC chr1 30179647 30179727 trf 10 8.0 10 79 5 63 0 38 10 51 1.36 TCTCTCTCTC chr1 30179647 30179726 trf 12 6.8 12 78 11 76 0 37 10 51 1.36 TCTCTCTCTGTC chr1 30179647 30179708 trf 10 5.9 10 81 7 68 0 36 9 54 1.34 TCTCTCTCTG chr1 30184663 30184688 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 30185327 30185383 trf 3 18.7 3 100 0 112 66 0 33 0 0.92 GAA chr1 30185384 30185425 trf 4 9.8 4 84 10 55 26 0 73 0 0.84 GGGA chr1 30186827 30186941 trf 6 19.0 6 98 0 165 43 0 22 33 1.54 ATAGAT chr1 30187689 30187748 trf 2 29.5 2 92 0 100 1 1 45 50 1.21 TG chr1 30190326 30190362 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 30190377 30190417 trf 2 20.0 2 94 0 71 2 0 47 50 1.14 GT chr1 30198823 30198886 trf 2 31.0 2 93 3 108 47 0 3 49 1.17 AT chr1 30202360 30202408 trf 4 12.2 4 82 4 62 33 0 66 0 0.92 AGGG chr1 30202365 30202412 trf 12 3.9 12 89 10 78 34 0 65 0 0.93 GGAGGGAAGGAG chr1 30202377 30202421 trf 8 5.5 8 78 10 54 36 0 63 0 0.95 GGAGGGAA chr1 30202514 30202561 trf 12 3.9 12 80 0 58 55 4 25 14 1.58 ATAGAAATAGAG chr1 30205789 30205861 trf 2 36.0 2 100 0 144 0 50 0 50 1.00 TC chr1 30205792 30205891 trf 10 10.8 9 94 4 53 0 58 0 41 0.98 CTCTCCCTC chr1 30205864 30205897 trf 4 8.2 4 93 0 57 0 78 0 21 0.75 CCCT chr1 30208295 30208449 trf 4 38.5 4 94 0 200 42 0 57 0 0.98 GAGA chr1 30209665 30209709 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 30214244 30214371 trf 10 12.7 10 72 12 100 51 11 35 2 1.50 AGAGAGACAG chr1 30214244 30214371 trf 2 63.5 2 72 6 69 51 11 35 2 1.50 AG chr1 30218543 30218582 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 30218720 30218747 trf 10 2.7 10 100 0 54 18 11 7 62 1.50 TACTTTTGAT chr1 30220205 30220266 trf 4 15.2 4 96 0 95 70 0 24 4 1.07 AGAA chr1 30220334 30220396 trf 2 31.0 2 86 0 70 40 0 9 50 1.35 AT chr1 30225390 30225424 trf 11 3.0 11 91 8 59 35 8 29 26 1.87 GACAAAGTTTG chr1 30226170 30226200 trf 4 7.8 4 92 7 53 76 23 0 0 0.78 AACA chr1 30226263 30226429 trf 2 83.5 2 89 1 244 48 0 51 0 1.00 AG chr1 30227005 30227067 trf 4 15.5 4 100 0 124 74 0 25 0 0.82 AGAA chr1 30227066 30227130 trf 4 16.0 4 100 0 128 25 0 75 0 0.81 GGAG chr1 30229398 30229426 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 30234564 30234590 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 CT chr1 30234589 30234622 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 30235759 30235840 trf 2 40.5 2 94 0 117 50 6 0 43 1.27 AT chr1 30235761 30235857 trf 12 8.0 12 84 0 102 50 10 0 39 1.37 ATATATATATAC chr1 30241628 30241697 trf 9 7.4 9 75 18 61 43 0 5 50 1.26 TATATATAT chr1 30241628 30241691 trf 2 31.5 2 77 17 60 44 0 6 49 1.28 TA chr1 30241693 30241812 trf 10 12.5 10 74 10 97 49 26 0 22 1.55 TATACATACA chr1 30241696 30241803 trf 6 18.2 6 82 11 132 50 28 0 19 1.54 ACATAC chr1 30243998 30244025 trf 5 5.4 5 100 0 54 0 0 18 81 0.69 TTGTT chr1 30245146 30245201 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 30246970 30247007 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 30247500 30247550 trf 12 4.2 12 92 0 73 28 30 42 0 1.56 CAGCAGCACGGG chr1 30249802 30249916 trf 6 19.3 6 93 3 133 0 61 0 38 0.96 CTCCCT chr1 30258565 30258668 trf 10 10.3 10 90 0 143 52 0 45 0 1.13 AGAGAGAGAG chr1 30258565 30258668 trf 4 25.8 4 87 0 143 52 0 45 0 1.13 AGAG chr1 30258565 30258668 trf 6 17.2 6 86 0 143 52 0 45 0 1.13 AGAGAG chr1 30262058 30262113 trf 4 13.8 4 100 0 110 25 23 0 50 1.49 TATC chr1 30262785 30262880 trf 12 7.2 12 77 16 75 1 63 0 35 1.02 CCCTCCTTCTCT chr1 30262797 30262841 trf 4 11.0 4 90 0 70 0 70 0 29 0.88 CTCC chr1 30262936 30263063 trf 4 32.0 4 82 1 130 0 40 9 49 1.35 CTCT chr1 30263371 30263399 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AAAC chr1 30265372 30265468 trf 4 23.8 4 96 1 174 72 1 26 0 0.91 AGAA chr1 30265466 30265497 trf 4 7.8 4 92 0 53 25 0 70 3 1.02 GAGG chr1 30265522 30265582 trf 4 15.2 4 96 3 113 50 0 50 0 1.00 AGGA chr1 30270605 30270639 trf 5 6.8 5 100 0 68 82 17 0 0 0.67 AAAAC chr1 30271347 30271474 trf 2 64.5 2 76 14 113 47 1 5 45 1.35 AT chr1 30275422 30275479 trf 5 11.2 5 85 14 73 77 0 0 22 0.77 AAAAT chr1 30276248 30276294 trf 5 9.2 5 100 0 92 80 19 0 0 0.71 AAAAC chr1 30276759 30276811 trf 4 14.0 4 88 8 67 0 0 28 71 0.87 GTTT chr1 30280636 30280673 trf 10 3.5 11 85 10 51 10 2 5 81 0.96 TTTTTATTTTG chr1 30298193 30298299 trf 8 13.4 8 94 5 180 0 35 0 64 0.94 TCTTTCTC chr1 30302205 30302372 trf 2 83.5 2 93 0 289 2 0 46 50 1.14 TG chr1 30314268 30314414 trf 4 37.2 4 95 4 271 49 0 24 26 1.51 TAGA chr1 30323150 30323199 trf 5 9.8 5 100 0 98 81 0 18 0 0.69 AAAAG chr1 30323199 30323265 trf 5 12.8 5 90 6 105 22 0 77 0 0.77 AGGGG chr1 30323210 30323338 trf 5 25.2 5 92 3 148 35 0 64 0 0.94 AGGGA chr1 30324900 30324938 trf 3 12.7 3 94 0 67 2 0 63 34 1.09 TGG chr1 30329198 30329289 trf 4 22.8 4 100 0 182 74 0 25 0 0.82 AGAA chr1 30329843 30329885 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 30339516 30339551 trf 12 2.9 12 91 0 52 8 2 71 17 1.23 TGGGTGGGGGAG chr1 30340037 30340108 trf 2 35.5 2 100 0 142 50 0 49 0 1.00 AG chr1 30341635 30341680 trf 9 4.7 9 79 15 54 46 13 6 33 1.69 TATACATAG chr1 30345695 30345739 trf 5 8.6 5 80 14 54 0 2 20 77 0.88 TTTGT chr1 30349118 30349192 trf 8 8.5 8 96 3 94 0 50 0 50 1.00 CTCTTCCT chr1 30349124 30349192 trf 2 38.0 2 78 21 80 0 50 0 50 1.00 CT chr1 30349191 30349247 trf 2 27.5 2 96 3 103 48 0 1 50 1.11 TA chr1 30349347 30349386 trf 2 19.5 2 100 0 78 51 0 0 48 1.00 AT chr1 30351069 30351115 trf 2 23.0 2 95 0 83 50 47 0 2 1.13 AC chr1 30354545 30354599 trf 9 6.3 9 81 10 60 74 25 0 0 0.83 AAACAAAAC chr1 30354545 30354599 trf 4 12.8 4 82 9 54 74 25 0 0 0.83 AAAC chr1 30357671 30357739 trf 4 17.0 4 100 0 136 50 0 25 25 1.50 GATA chr1 30364457 30364673 trf 4 53.0 4 90 7 301 45 0 26 26 1.57 AGAT chr1 30365497 30365634 trf 6 22.8 6 98 0 175 16 24 0 58 1.38 CTTATC chr1 30378057 30378093 trf 12 2.9 12 95 4 63 0 58 0 41 0.98 TCCTCTTTCCCC chr1 30380416 30380513 trf 5 19.4 5 90 7 137 1 0 19 79 0.79 TTTTG chr1 30380510 30380545 trf 4 8.8 4 100 0 70 0 0 48 51 1.00 GTTG chr1 30381709 30381735 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 30381896 30381921 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 30386590 30386652 trf 6 10.3 6 100 0 124 16 16 0 67 1.23 TTATTC chr1 30392760 30392846 trf 4 21.8 4 84 7 68 0 36 0 63 0.94 CTTT chr1 30392764 30392887 trf 8 15.5 8 83 4 106 0 39 0 60 0.96 TTTCTTCC chr1 30392783 30392890 trf 4 26.8 4 90 0 124 0 40 0 59 0.97 CTTC chr1 30399272 30399327 trf 2 27.0 2 88 3 83 5 0 47 47 1.25 GT chr1 30402574 30402644 trf 6 11.8 6 79 11 65 0 0 18 81 0.69 TTTTTG chr1 30402586 30402645 trf 9 6.4 9 81 11 57 0 0 16 83 0.66 TTTTTTGTT chr1 30403986 30404027 trf 4 10.2 4 100 0 82 0 24 24 51 1.49 TCTG chr1 30404213 30404281 trf 2 34.0 2 84 0 91 50 7 42 0 1.30 AG chr1 30406749 30406807 trf 6 9.7 6 84 0 62 50 37 1 10 1.47 CACATA chr1 30411320 30411522 trf 5 40.8 5 95 2 174 0 15 31 52 1.43 TTTGC chr1 30413172 30413215 trf 4 10.8 4 100 0 86 0 25 23 51 1.49 TCTG chr1 30415704 30415741 trf 2 18.5 2 94 0 65 48 48 0 2 1.15 AC chr1 30416379 30416410 trf 2 15.5 2 93 0 53 48 48 3 0 1.17 AC chr1 30420595 30420628 trf 4 8.2 4 100 0 66 24 0 27 48 1.51 GATT chr1 30429693 30429900 trf 4 53.8 4 80 8 216 47 0 22 28 1.55 AGAT chr1 30431561 30431608 trf 2 23.5 2 95 0 85 48 0 51 0 1.00 AG chr1 30432719 30432788 trf 5 13.8 5 95 0 93 59 15 24 0 1.37 AAGAC chr1 30439544 30439576 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 30440132 30440174 trf 4 10.5 4 100 0 84 76 0 0 23 0.79 AATA chr1 30443399 30443470 trf 2 35.5 2 94 0 124 1 0 47 50 1.09 TG chr1 30451471 30451589 trf 5 23.6 5 100 0 236 0 39 0 60 0.97 TCTCT chr1 30451474 30451922 trf 5 84.8 5 82 13 220 0 53 0 46 1.00 CTTCC chr1 30451596 30451859 trf 12 22.9 12 84 10 188 0 62 0 37 0.96 CCCTTCCCTTCC chr1 30451763 30452065 trf 5 58.0 5 80 12 163 0 44 4 50 1.28 TCTCT chr1 30451865 30452067 trf 2 109.5 2 69 17 125 0 39 7 51 1.36 TC chr1 30452725 30452905 trf 4 46.0 4 87 5 226 46 1 26 25 1.62 AGAT chr1 30465402 30465427 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 30465426 30465488 trf 2 31.0 2 93 0 106 51 1 0 46 1.10 AT chr1 30466862 30466983 trf 3 39.0 3 79 9 111 35 0 64 0 0.94 GGA chr1 30466880 30467056 trf 8 22.9 8 74 18 83 35 0 63 1 1.02 GGAGGAAG chr1 30466924 30467034 trf 4 28.5 4 80 7 111 31 0 67 0 0.97 GGGA chr1 30467031 30467079 trf 4 12.0 4 81 0 60 52 2 43 2 1.24 AGGA chr1 30471814 30471869 trf 1 55.0 1 90 0 83 94 1 1 1 0.39 A chr1 30473478 30473906 trf 4 109.0 4 82 6 403 46 4 21 26 1.71 GATA chr1 30474442 30474480 trf 3 12.7 3 100 0 76 65 34 0 0 0.93 CAA chr1 30475403 30475440 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 30475899 30475933 trf 4 8.5 4 100 0 68 0 0 23 76 0.79 TTGT chr1 30482035 30482092 trf 2 28.5 2 100 0 114 0 0 50 49 1.00 GT chr1 30490882 30490939 trf 10 5.5 10 81 8 60 49 15 1 33 1.55 ATATATATAC chr1 30490884 30490939 trf 8 6.9 8 74 15 51 49 16 1 32 1.56 ATATATAC chr1 30494105 30494150 trf 2 23.5 2 84 8 58 46 0 51 2 1.13 GA chr1 30494155 30494229 trf 2 37.0 2 91 0 121 2 1 47 48 1.24 GT chr1 30496745 30496888 trf 2 72.5 2 81 2 164 50 41 0 7 1.36 AC chr1 30498235 30498268 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 30501077 30501142 trf 2 32.5 2 96 0 121 50 47 0 1 1.10 AC chr1 30503796 30503839 trf 2 21.5 2 100 0 86 48 0 51 0 1.00 GA chr1 30505053 30505105 trf 4 13.0 4 100 0 104 50 0 25 25 1.50 AGAT chr1 30506103 30506137 trf 2 17.0 2 93 0 59 47 50 2 0 1.16 CA chr1 30506136 30506199 trf 2 31.5 2 96 0 117 52 0 47 0 1.00 AG chr1 30508614 30508648 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 30524706 30524808 trf 5 20.4 5 97 0 132 71 0 28 0 0.86 GAAAA chr1 30525764 30525810 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 30531076 30531144 trf 10 6.6 10 85 6 91 17 55 0 26 1.42 CTCCTCCCAA chr1 30531854 30531905 trf 2 25.5 2 95 0 93 49 1 0 49 1.12 TA chr1 30534287 30534377 trf 2 45.0 2 90 0 126 44 48 5 1 1.33 AC chr1 30557946 30557976 trf 1 30.0 1 93 0 51 96 3 0 0 0.21 A chr1 30558335 30558410 trf 5 15.0 5 94 0 105 38 34 5 21 1.76 CAACT chr1 30559276 30559311 trf 6 5.8 6 90 9 54 0 0 14 85 0.59 TTTTTG chr1 30560445 30560478 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 30563765 30563841 trf 4 18.8 4 84 8 100 2 1 23 72 1.05 TTTG chr1 30571752 30571792 trf 10 4.0 10 93 0 53 7 0 42 50 1.30 TGTATGTGTG chr1 30571758 30571792 trf 2 17.0 2 93 0 59 2 0 47 50 1.16 TG chr1 30579723 30579765 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 30589778 30589824 trf 2 23.5 2 86 4 67 50 45 0 4 1.21 AC chr1 30591811 30591869 trf 2 29.0 2 82 0 71 43 48 6 1 1.40 AC chr1 30592340 30592380 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 30593055 30593120 trf 12 4.9 13 75 17 62 1 58 0 40 1.07 CTTCCCTCCTTCC chr1 30593067 30593120 trf 8 6.6 8 78 8 54 1 60 0 37 1.08 CCTTCCCT chr1 30593464 30593526 trf 10 6.0 10 73 14 54 41 40 8 9 1.67 TGCACACACA chr1 30596096 30596144 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 AT chr1 30596652 30596692 trf 12 3.4 12 96 3 73 32 32 0 35 1.58 ATCATCACTACT chr1 30597440 30597503 trf 6 9.7 6 82 16 72 0 38 12 49 1.41 CTCTGT chr1 30598146 30598218 trf 2 37.0 2 91 5 121 48 0 51 0 1.00 AG chr1 30600036 30600089 trf 5 10.6 5 100 0 106 81 0 18 0 0.70 AAAAG chr1 30600278 30600320 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 30600319 30600370 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 30607494 30607551 trf 12 4.8 12 82 18 66 0 0 17 82 0.67 TTTGTTTTTGTT chr1 30607494 30607539 trf 12 3.5 13 88 11 67 0 0 17 82 0.68 TTTGTTTGTTGTT chr1 30614006 30614059 trf 8 6.4 8 77 16 54 83 0 1 15 0.74 AAAAAAAT chr1 30618203 30618250 trf 4 11.8 4 100 0 94 0 23 51 25 1.49 GTGC chr1 30618247 30618274 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 30623817 30623860 trf 12 3.5 12 75 6 50 44 18 6 30 1.76 TACATATATGCA chr1 30628248 30628279 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 30630134 30630204 trf 3 23.3 3 94 0 122 64 2 0 32 1.08 ATA chr1 30631458 30631502 trf 2 22.0 2 95 0 79 2 0 47 50 1.13 TG chr1 30635886 30635921 trf 2 17.5 2 93 0 61 51 2 0 45 1.16 AT chr1 30638198 30638238 trf 3 13.3 3 100 0 80 32 0 0 67 0.91 TAT chr1 30649454 30649497 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 30651231 30651278 trf 2 23.5 2 100 0 94 0 51 0 48 1.00 CT chr1 30651420 30651460 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 30651489 30651545 trf 4 14.0 4 100 0 112 50 0 50 0 1.00 GAAG chr1 30652778 30652809 trf 3 10.0 3 93 6 53 67 0 0 32 0.91 AAT chr1 30660569 30660617 trf 1 48.0 1 100 0 96 0 0 0 100 0.00 T chr1 30668084 30668148 trf 6 10.0 6 76 18 58 0 21 12 65 1.25 TTCTTG chr1 30677397 30677448 trf 4 12.8 4 100 0 102 25 0 23 50 1.49 TATG chr1 30680502 30680533 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 30687812 30687864 trf 8 7.0 8 79 16 58 38 19 40 1 1.63 GCAAGAGC chr1 30690073 30690125 trf 8 7.0 8 79 16 58 38 19 40 1 1.63 GCAAGAGC chr1 30697951 30697976 trf 4 6.2 4 100 0 50 28 0 72 0 0.86 AGGG chr1 30697973 30698039 trf 4 16.5 4 100 0 132 48 0 51 0 1.00 GGAA chr1 30699103 30699155 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 30699797 30699966 trf 11 15.4 11 94 0 284 46 12 18 23 1.83 GAAATGTATCA chr1 30700466 30700522 trf 2 28.0 2 96 0 103 0 51 0 48 1.00 TC chr1 30705832 30705941 trf 12 7.7 16 72 21 75 57 11 30 0 1.34 GAGCAAGAGAGCAAGA chr1 30705832 30705941 trf 8 15.4 8 72 22 75 57 11 30 0 1.34 GAGCAAGA chr1 30706514 30706544 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 30706691 30706761 trf 8 8.5 8 79 6 77 50 15 2 31 1.59 ACATATAT chr1 30706726 30706761 trf 4 8.8 4 87 0 52 48 20 0 31 1.50 CATA chr1 30707910 30707957 trf 3 16.0 3 86 4 60 2 0 38 59 1.09 TTG chr1 30711271 30711352 trf 5 16.2 5 94 0 144 77 0 22 0 0.76 AAAGA chr1 30714120 30714213 trf 5 18.6 5 98 0 114 10 0 20 68 1.19 GTTTA chr1 30714460 30714494 trf 12 2.9 12 95 4 61 17 8 17 55 1.66 CTATTGTGTTAT chr1 30715749 30715794 trf 5 8.8 5 90 2 63 0 2 15 82 0.77 TTTTG chr1 30715858 30715908 trf 2 25.0 2 95 0 91 50 48 0 2 1.12 AC chr1 30716583 30716908 trf 2 159.5 2 73 8 183 2 44 6 46 1.42 TC chr1 30717735 30717966 trf 8 27.9 8 72 12 83 1 38 9 49 1.46 TCTCTCTG chr1 30717872 30717967 trf 2 48.0 2 86 2 129 0 46 3 50 1.17 TC chr1 30721314 30721419 trf 2 53.0 2 88 1 149 2 2 47 46 1.32 TG chr1 30728732 30728775 trf 4 10.8 4 100 0 86 51 0 48 0 1.00 GAAG chr1 30728772 30728848 trf 4 19.0 4 100 0 152 75 0 25 0 0.81 GAAA chr1 30737953 30738020 trf 2 34.0 2 96 3 127 0 49 0 50 1.00 CT chr1 30739873 30739941 trf 4 17.2 4 96 3 129 50 0 25 25 1.50 ATAG chr1 30740142 30740171 trf 4 7.2 4 100 0 58 24 24 0 51 1.48 TCTA chr1 30741172 30741254 trf 4 20.5 4 100 0 164 50 0 24 25 1.50 TAGA chr1 30750057 30750103 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 30751694 30751739 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 30759477 30759520 trf 2 21.5 2 90 0 68 2 0 44 53 1.13 TG chr1 30767075 30767109 trf 2 17.0 2 93 0 59 50 2 0 47 1.16 AT chr1 30769435 30769476 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 30772333 30772436 trf 4 25.2 4 95 3 163 77 0 22 0 0.77 AGAA chr1 30772841 30772884 trf 11 4.2 10 88 11 61 88 0 11 0 0.52 AAAAAAAAGA chr1 30775019 30775078 trf 12 4.8 12 81 8 73 64 0 35 0 0.94 AGAAAGAAAGAG chr1 30775019 30775078 trf 4 14.2 4 85 7 55 64 0 35 0 0.94 AGAA chr1 30775035 30775072 trf 2 18.5 2 88 0 56 56 0 43 0 0.99 AG chr1 30775081 30775197 trf 4 28.8 4 87 5 117 34 0 64 0 1.00 AGGG chr1 30775107 30775264 trf 12 13.2 12 91 4 156 41 0 58 0 0.98 AGGAGGGAAGGA chr1 30775116 30775264 trf 8 18.6 8 96 0 190 41 0 58 0 0.98 GGAAGGAA chr1 30775194 30775264 trf 4 17.5 4 100 0 140 50 0 50 0 1.00 AGGA chr1 30775589 30775638 trf 2 24.5 2 95 0 89 51 46 0 2 1.12 AC chr1 30778021 30778059 trf 6 6.7 6 85 8 53 0 0 13 86 0.56 TTTTGT chr1 30778021 30778059 trf 11 3.4 11 88 3 58 0 0 13 86 0.56 TTTTTTTTTGT chr1 30778211 30778251 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 30778775 30778810 trf 7 5.0 7 86 13 54 82 17 0 0 0.66 AAAAAAC chr1 30780621 30780662 trf 5 8.2 5 94 0 73 2 0 39 58 1.11 TGGTT chr1 30782517 30782567 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 30782993 30783044 trf 4 12.8 4 78 0 57 49 27 3 19 1.66 ACAT chr1 30782997 30783054 trf 8 7.1 8 81 0 51 47 29 3 19 1.66 ACATACAC chr1 30783167 30783213 trf 8 5.8 8 84 0 56 52 23 0 23 1.48 ACACATAT chr1 30789591 30789636 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 30793370 30793395 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 30797578 30797641 trf 2 31.5 2 100 0 126 0 50 0 49 1.00 CT chr1 30805026 30805058 trf 6 5.3 6 100 0 64 0 68 15 15 1.21 CCGCTC chr1 30821463 30821516 trf 4 13.2 4 95 0 61 50 9 0 39 1.35 ATAT chr1 30828105 30828169 trf 4 16.0 4 100 0 128 50 0 50 0 1.00 AGGA chr1 30837734 30837770 trf 9 4.0 9 96 0 54 61 0 38 0 0.96 AAAGAAAGG chr1 30843246 30843276 trf 4 7.5 4 100 0 60 0 23 50 26 1.50 TGCG chr1 30847201 30847268 trf 4 16.8 4 88 0 80 26 50 14 7 1.70 CACG chr1 30850605 30850664 trf 6 9.8 6 84 0 82 33 3 15 47 1.62 TATATG chr1 30871207 30871253 trf 2 23.0 2 95 0 83 0 47 0 52 1.00 TC chr1 30875140 30875168 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 30882566 30882615 trf 1 49.0 1 79 0 53 0 0 10 89 0.48 T chr1 30884684 30884744 trf 10 5.2 12 75 25 51 75 25 0 0 0.81 CAACAACAACAA chr1 30884684 30884744 trf 3 21.0 3 83 16 51 75 25 0 0 0.81 CAA chr1 30884704 30884750 trf 4 12.2 4 80 19 55 80 19 0 0 0.71 AAAC chr1 30884708 30884750 trf 7 5.9 7 83 10 50 80 19 0 0 0.70 AAAACAA chr1 30884792 30884853 trf 2 30.5 2 93 0 104 47 0 52 0 1.00 AG chr1 30887374 30887434 trf 4 15.0 4 100 0 120 0 50 0 50 1.00 CTTC chr1 30887432 30887501 trf 2 34.5 2 94 0 120 0 52 0 47 1.00 TC chr1 30890388 30890458 trf 4 17.5 4 100 0 140 0 24 0 75 0.80 TTTC chr1 30891092 30891124 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 30891309 30891335 trf 6 4.3 6 100 0 52 0 0 15 84 0.62 TTTGTT chr1 30895690 30895779 trf 6 14.8 6 86 0 124 0 46 2 51 1.13 CTCTCT chr1 30895690 30895779 trf 4 22.2 4 88 0 124 0 46 2 51 1.13 CTCT chr1 30899634 30899661 trf 4 6.8 4 100 0 54 51 0 0 48 1.00 TAAT chr1 30901967 30902011 trf 2 22.5 2 86 13 65 52 45 2 0 1.13 AC chr1 30902011 30902056 trf 4 11.2 4 100 0 90 48 0 51 0 1.00 GAAG chr1 30905713 30905766 trf 4 13.0 4 84 11 72 0 0 22 77 0.77 GTTT chr1 30906739 30906766 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 30913011 30913041 trf 1 30.0 1 93 0 51 0 3 0 96 0.21 T chr1 30914535 30914601 trf 12 5.5 12 90 0 78 50 37 12 0 1.40 GACACACACACA chr1 30914536 30914601 trf 4 16.2 4 96 0 67 50 38 10 0 1.37 ACAC chr1 30917415 30917457 trf 4 10.8 4 89 5 68 76 23 0 0 0.79 AAAC chr1 30922168 30922202 trf 4 8.2 4 87 6 50 0 0 23 76 0.79 GTTT chr1 30922906 30922932 trf 4 6.5 4 100 0 52 50 26 23 0 1.50 CAAG chr1 30926109 30926134 trf 11 2.3 11 100 0 50 84 16 0 0 0.63 AAACAAACAAA chr1 30927668 30927804 trf 4 34.5 4 86 5 89 52 0 46 0 1.05 AAGG chr1 30927736 30927861 trf 12 10.5 12 87 5 173 70 0 29 0 0.88 AAGAAAGAAAGA chr1 30927736 30927861 trf 8 15.8 8 90 5 173 70 0 29 0 0.88 AAGAAAGA chr1 30927801 30927861 trf 4 15.0 4 100 0 120 75 0 25 0 0.81 GAAA chr1 30928074 30928101 trf 5 5.4 5 100 0 54 81 0 0 18 0.69 AAAAT chr1 30930478 30930611 trf 5 26.8 5 92 4 171 0 25 0 74 0.82 CTTTT chr1 30931717 30931742 trf 12 2.1 12 100 0 50 0 24 32 44 1.54 TGCTGCTGCTGT chr1 30932289 30932331 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 30938830 30938947 trf 10 11.1 11 71 13 61 48 3 42 5 1.42 GAGAGAGAGAA chr1 30938830 30938878 trf 2 24.5 2 87 4 71 45 2 52 0 1.12 GA chr1 30946225 30946267 trf 11 4.0 11 84 6 52 80 19 0 0 0.70 AAAAAAAAACC chr1 30952555 30952590 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 30952917 30952974 trf 11 4.6 13 84 10 59 84 0 14 1 0.71 GAAAAAAGAAAAA chr1 30952927 30952965 trf 1 38.0 1 89 0 58 94 0 5 0 0.30 A chr1 30956281 30956360 trf 2 39.5 2 87 5 115 48 1 49 1 1.17 AG chr1 30958724 30958771 trf 5 8.8 5 93 4 67 76 19 0 4 0.95 AAAAC chr1 30964674 30964880 trf 5 41.8 5 87 2 301 0 35 0 64 0.94 TTCTC chr1 30965938 30965982 trf 4 11.5 4 90 9 74 22 0 0 77 0.77 TTTA chr1 30968022 30968071 trf 2 24.5 2 95 0 89 51 2 0 46 1.12 AT chr1 30979232 30979262 trf 5 6.0 5 100 0 60 0 0 20 80 0.72 TTTTG chr1 30979819 30979866 trf 5 9.4 5 95 0 67 0 0 25 74 0.82 TTGTT chr1 30986286 30986322 trf 3 12.0 3 93 0 63 0 30 33 36 1.58 GCT chr1 30989851 30990266 trf 12 34.7 12 76 11 156 0 36 1 60 1.12 TCTTTCTTCCTT chr1 30989868 30989972 trf 4 25.5 4 92 3 172 0 47 0 51 1.07 CTTC chr1 30989973 30990052 trf 8 10.0 8 89 4 90 0 35 0 64 0.94 TCTCTCTT chr1 30989985 30990266 trf 4 71.0 4 78 12 134 1 32 2 64 1.13 TCTT chr1 30992595 30992637 trf 7 6.0 7 89 10 68 0 0 16 83 0.65 TTTTTTG chr1 30992834 30992875 trf 1 41.0 1 90 0 55 92 7 0 0 0.38 A chr1 30994476 30994501 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 30997294 30997325 trf 6 5.2 6 100 0 62 0 0 16 83 0.64 TTTTTG chr1 30997988 30998029 trf 4 10.2 4 83 0 55 73 4 21 0 1.02 AAAG chr1 30998244 30998274 trf 3 10.0 3 92 0 51 0 30 33 36 1.58 GCT chr1 31000169 31000196 trf 5 5.4 5 100 0 54 0 0 22 77 0.76 TGTTT chr1 31000752 31000794 trf 5 8.4 5 94 0 57 0 0 26 73 0.83 TTGTT chr1 31005318 31005421 trf 8 13.9 8 86 13 91 0 29 12 58 1.35 TCTTGCTT chr1 31007497 31007618 trf 8 15.9 8 88 11 114 0 30 12 57 1.36 TCTTGCTT chr1 31007523 31007619 trf 8 12.0 8 90 8 133 0 34 12 53 1.39 TCTTGCTC chr1 31007780 31007834 trf 1 54.0 1 100 0 108 0 0 0 100 0.00 T chr1 31009617 31009714 trf 4 23.8 4 85 4 122 70 3 26 0 1.02 AGAA chr1 31013571 31013709 trf 12 11.5 12 93 0 132 0 36 0 63 0.94 TCCTTTCTTTCT chr1 31013571 31013648 trf 4 19.2 4 94 0 127 0 45 0 54 0.99 TCCT chr1 31013571 31013708 trf 8 17.1 8 94 0 139 0 36 0 63 0.95 TCCTTTCT chr1 31013645 31013709 trf 4 16.0 4 100 0 128 0 25 0 75 0.81 CTTT chr1 31016995 31017022 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 31017250 31017277 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 31017909 31017956 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 31021279 31021334 trf 2 27.5 2 96 0 101 0 47 0 52 1.00 TC chr1 31022155 31022180 trf 12 2.1 12 100 0 50 0 32 16 52 1.44 TCTGTCTGTCTC chr1 31034600 31034631 trf 12 2.6 12 89 0 53 0 41 9 48 1.36 CTCTCTCTGTCT chr1 31035305 31035344 trf 4 9.8 4 100 0 78 51 25 0 23 1.49 ACAT chr1 31036572 31036598 trf 4 6.5 4 100 0 52 23 0 0 76 0.78 TTAT chr1 31038010 31038036 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 31039047 31039093 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 31039125 31039161 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 31039160 31039199 trf 2 19.5 2 94 0 69 51 2 0 46 1.14 AT chr1 31039708 31039755 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 31045734 31045902 trf 8 20.1 8 64 20 60 42 36 5 14 1.69 ACACACAT chr1 31053225 31053398 trf 4 45.0 4 81 7 207 23 21 2 52 1.59 TCTA chr1 31054263 31054356 trf 4 23.0 4 89 6 53 0 37 0 62 0.96 TTCT chr1 31054264 31054352 trf 8 10.9 8 86 6 70 0 38 0 61 0.96 TCTTTCTC chr1 31054283 31054332 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 31060403 31060440 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 31062379 31062414 trf 4 8.8 4 100 0 70 22 0 0 77 0.78 TTTA chr1 31062907 31062958 trf 3 16.3 3 84 8 66 39 0 0 60 0.97 TTA chr1 31069546 31069589 trf 2 21.5 2 95 0 77 2 48 0 48 1.14 TC chr1 31074050 31074080 trf 10 2.8 11 95 5 53 6 80 0 13 0.91 CCCCTCCCCAT chr1 31074108 31074251 trf 4 36.0 4 92 1 153 1 58 0 39 1.07 CCTT chr1 31074416 31074506 trf 3 30.0 3 100 0 180 0 33 0 66 0.92 CTT chr1 31084471 31084506 trf 4 8.8 4 93 0 61 2 25 20 51 1.61 TCTG chr1 31086395 31086478 trf 8 9.9 8 78 10 85 49 14 1 34 1.51 ATATATAC chr1 31091350 31091384 trf 2 17.0 2 87 0 50 5 0 44 50 1.26 TG chr1 31091354 31091383 trf 10 2.9 10 100 0 58 6 0 41 51 1.28 TGTGTGTGTA chr1 31095700 31095735 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 31099267 31099337 trf 12 5.8 12 81 8 70 0 67 0 32 0.91 CTCTCCCCCTCT chr1 31103703 31103748 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 31111984 31112029 trf 4 11.2 4 100 0 90 73 0 0 26 0.84 TAAA chr1 31112938 31113018 trf 2 40.0 2 92 0 133 3 0 46 50 1.19 GT chr1 31114209 31114247 trf 2 19.5 2 89 5 60 0 2 47 50 1.15 TG chr1 31116738 31116783 trf 12 3.8 12 84 0 63 33 0 66 0 0.92 GAGAGGGAGGGG chr1 31117827 31117871 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 31118746 31118842 trf 2 48.0 2 97 0 183 1 0 48 50 1.07 GT chr1 31120836 31120862 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 31121005 31121054 trf 2 24.5 2 95 0 89 0 0 46 53 1.00 TG chr1 31124913 31124939 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 31135074 31135108 trf 9 3.6 9 85 14 50 41 2 0 55 1.15 TATATTATA chr1 31139041 31139090 trf 2 25.0 2 79 4 55 46 6 2 44 1.39 AT chr1 31139396 31139451 trf 2 27.0 2 81 3 65 45 3 5 45 1.44 AT chr1 31143295 31143372 trf 2 38.5 2 97 0 145 50 48 0 1 1.09 AC chr1 31151593 31151641 trf 4 12.0 4 90 0 78 22 2 25 50 1.60 TGTA chr1 31152855 31152907 trf 2 26.0 2 96 0 95 50 1 0 48 1.12 TA chr1 31153016 31153096 trf 2 39.5 2 79 7 63 12 0 40 47 1.41 TG chr1 31153633 31153680 trf 3 15.7 3 100 0 94 34 0 0 65 0.93 TAT chr1 31156029 31156063 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 31159625 31159673 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 31165408 31165454 trf 1 46.0 1 100 0 92 100 0 0 0 0.00 A chr1 31166368 31166399 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 31172147 31172189 trf 5 8.8 5 87 7 61 80 0 19 0 0.70 AAAAG chr1 31172853 31172901 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 31176893 31176955 trf 2 31.0 2 86 0 88 4 0 45 50 1.23 TG chr1 31178697 31178736 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 31179371 31179461 trf 2 46.5 2 86 10 107 44 2 3 50 1.31 AT chr1 31180604 31180754 trf 2 80.0 2 72 15 88 46 4 2 46 1.37 AT chr1 31180676 31180755 trf 9 9.1 9 75 17 78 44 0 1 54 1.08 TATATATAT chr1 31180678 31180755 trf 7 10.1 7 71 20 57 44 0 1 54 1.08 TATATAT chr1 31181889 31182030 trf 4 35.2 4 97 0 192 46 0 53 0 1.00 AGGA chr1 31182351 31182397 trf 3 15.0 3 95 4 83 32 0 0 67 0.91 TTA chr1 31184093 31184135 trf 6 7.0 6 86 0 57 23 0 30 45 1.53 GTGTAT chr1 31184612 31184762 trf 4 38.5 4 82 12 71 18 31 2 48 1.62 TCTA chr1 31184648 31184697 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 31187176 31187249 trf 8 9.4 8 73 16 55 52 34 1 12 1.48 ACACACAT chr1 31187176 31187219 trf 2 21.5 2 80 0 50 53 39 0 6 1.28 AC chr1 31187368 31187409 trf 2 20.5 2 89 0 64 51 43 0 4 1.23 AC chr1 31195980 31196028 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 31196030 31196129 trf 2 49.5 2 83 0 117 48 7 44 0 1.30 GA chr1 31197853 31197883 trf 4 7.5 4 100 0 60 50 23 0 26 1.50 ATAC chr1 31198246 31198298 trf 5 10.4 5 100 0 104 80 0 0 19 0.71 AAAAT chr1 31198363 31198503 trf 4 35.8 4 85 7 117 0 42 9 48 1.35 CTCT chr1 31202479 31202523 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 31206073 31206119 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 GT chr1 31206758 31206806 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 31209870 31210015 trf 2 71.0 2 76 4 83 40 7 8 44 1.63 AT chr1 31214596 31214647 trf 2 25.5 2 91 0 75 1 3 49 45 1.32 GT chr1 31215444 31215542 trf 2 49.5 2 91 2 153 45 50 4 0 1.20 AC chr1 31218567 31218594 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 31219202 31219227 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 31221273 31221306 trf 4 8.2 4 100 0 66 27 0 24 48 1.51 ATTG chr1 31228636 31228685 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 31228722 31228761 trf 6 6.5 6 84 0 51 48 30 0 20 1.50 ATACAC chr1 31229791 31229846 trf 5 11.0 5 88 0 74 3 16 20 60 1.51 TTCTG chr1 31231994 31232033 trf 4 9.8 4 100 0 78 76 0 0 23 0.78 AAAT chr1 31232600 31232627 trf 5 5.4 5 100 0 54 0 0 18 81 0.69 TTGTT chr1 31244545 31244576 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 31244727 31244784 trf 6 9.3 6 90 3 69 24 0 75 0 0.80 GGGGGA chr1 31252992 31253024 trf 4 8.0 4 100 0 64 75 0 0 25 0.81 AAAT chr1 31257069 31257144 trf 2 37.5 2 94 0 132 53 46 0 0 1.00 AC chr1 31263068 31263119 trf 4 12.8 4 100 0 102 0 50 0 49 1.00 TCCT chr1 31263905 31263962 trf 4 14.2 4 96 0 105 50 0 49 0 1.00 GAAG chr1 31264045 31264087 trf 12 3.6 12 83 3 59 59 0 38 2 1.10 AGAGAGAAAGAG chr1 31265929 31265985 trf 1 56.0 1 78 0 58 0 10 0 89 0.49 T chr1 31265929 31265985 trf 10 5.1 11 87 10 71 0 10 0 89 0.49 TTTTCTTTTTT chr1 31265929 31265983 trf 6 9.7 6 92 7 64 0 11 0 88 0.50 TTTTCT chr1 31271615 31271662 trf 12 3.9 12 82 0 58 55 0 44 0 0.99 GAAGGAAGAAAG chr1 31271615 31271656 trf 4 10.2 4 89 0 64 53 0 46 0 1.00 GAAG chr1 31273350 31273386 trf 4 9.0 4 100 0 72 75 25 0 0 0.81 CAAA chr1 31273489 31273556 trf 12 5.3 12 80 16 55 1 10 4 83 0.85 TTTTTTTTTCTT chr1 31273512 31273556 trf 7 6.6 7 89 5 56 0 4 6 88 0.62 TTTTGTT chr1 31276244 31276299 trf 3 18.3 3 96 0 101 65 0 1 32 1.03 AAT chr1 31285568 31285685 trf 5 23.4 5 96 0 198 76 20 3 0 0.94 CAAAA chr1 31287575 31287636 trf 3 20.3 3 86 0 77 39 34 26 0 1.57 AGC chr1 31287581 31287644 trf 12 5.5 12 79 11 69 41 33 25 0 1.56 AGCAGCAGCAAA chr1 31287859 31287936 trf 4 19.2 4 97 0 145 0 25 0 74 0.83 TCTT chr1 31319701 31319764 trf 2 32.0 2 80 3 65 9 0 42 47 1.36 GT chr1 31321522 31321553 trf 3 10.3 3 100 0 62 35 32 0 32 1.58 ATC chr1 31321570 31321602 trf 3 10.7 3 100 0 64 68 31 0 0 0.90 AAC chr1 31322297 31322326 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 31326131 31326191 trf 4 15.2 4 92 3 104 26 25 0 48 1.52 TATC chr1 31326626 31326660 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 31337728 31337772 trf 10 4.4 10 85 0 52 0 40 6 52 1.28 CTCTCTGTCT chr1 31337728 31337772 trf 6 7.3 6 86 0 52 0 40 6 52 1.28 CTCTCT chr1 31337728 31337772 trf 4 11.0 4 85 0 52 0 40 6 52 1.28 CTCT chr1 31343186 31343213 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 31349196 31349225 trf 8 3.8 8 90 9 51 44 0 13 41 1.44 AATGTTAA chr1 31352499 31352567 trf 4 17.0 4 100 0 136 0 25 0 75 0.81 CTTT chr1 31359547 31359579 trf 5 6.4 5 100 0 64 37 0 0 62 0.95 TTATA chr1 31359691 31359759 trf 2 34.0 2 87 0 100 45 1 4 48 1.31 AT chr1 31360696 31360792 trf 10 9.4 10 88 8 140 0 0 17 82 0.67 TTTTGTTTTG chr1 31361292 31361359 trf 4 16.5 4 96 3 125 25 25 0 49 1.51 TATC chr1 31363914 31363982 trf 2 34.0 2 91 5 111 1 1 47 50 1.19 TG chr1 31369256 31369303 trf 4 12.0 4 95 4 87 25 25 0 48 1.51 TCTA chr1 31372536 31372567 trf 2 15.5 2 93 0 53 0 0 45 54 0.99 TG chr1 31373112 31373140 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 31374014 31374082 trf 3 22.7 3 100 0 136 67 0 32 0 0.91 AAG chr1 31374077 31374127 trf 4 12.5 4 100 0 100 76 0 24 0 0.80 AAGA chr1 31374574 31374606 trf 2 16.0 2 93 0 55 50 0 46 3 1.17 GA chr1 31379749 31379810 trf 2 30.5 2 76 0 50 52 37 3 6 1.44 AC chr1 31381219 31381254 trf 12 2.9 12 86 0 52 5 2 74 17 1.14 GTGGGTGGGGGA chr1 31383578 31383603 trf 12 2.1 12 100 0 50 16 76 0 8 1.02 CTCCCCCACCCA chr1 31391081 31391183 trf 6 17.0 6 96 0 132 50 8 0 41 1.34 CATATA chr1 31391185 31391226 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 31398521 31398553 trf 4 8.0 4 100 0 64 50 25 25 0 1.50 AGAC chr1 31398571 31398620 trf 6 8.2 6 95 0 80 67 28 0 4 1.09 ACACAA chr1 31401739 31401780 trf 2 20.5 2 100 0 82 48 0 0 51 1.00 TA chr1 31402755 31402820 trf 2 32.5 2 96 0 121 50 47 1 0 1.10 AC chr1 31406506 31406547 trf 4 10.2 4 100 0 82 24 0 0 75 0.80 TTTA chr1 31408062 31408106 trf 8 5.5 8 91 0 61 4 2 31 61 1.28 TTGTGTGT chr1 31410200 31410242 trf 12 3.5 12 83 0 57 50 40 2 7 1.43 TACACACACACA chr1 31417431 31417476 trf 5 8.8 5 85 9 56 80 17 0 2 0.82 AAAAC chr1 31417797 31417828 trf 10 2.9 11 90 9 55 16 0 0 83 0.64 TTTTATTTTTA chr1 31418174 31418212 trf 3 12.3 3 88 5 58 65 31 2 0 1.06 ACA chr1 31424384 31424414 trf 3 10.0 3 100 0 60 66 33 0 0 0.92 CAA chr1 31424939 31424986 trf 12 3.9 12 80 0 58 46 40 2 10 1.50 ACACACACACAT chr1 31428712 31428791 trf 5 16.0 5 79 12 83 81 17 0 1 0.77 AAAAC chr1 31431335 31431364 trf 2 14.5 2 100 0 58 0 48 0 51 1.00 TC chr1 31432827 31432888 trf 2 31.0 2 93 3 106 49 0 50 0 1.00 GA chr1 31434809 31434952 trf 2 73.0 2 77 4 148 46 2 48 2 1.28 AG chr1 31444020 31444061 trf 2 20.5 2 100 0 82 48 0 0 51 1.00 TA chr1 31447498 31447575 trf 6 12.8 6 100 0 154 16 66 16 0 1.26 CCCAGC chr1 31450137 31450167 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 TC chr1 31453692 31453724 trf 4 8.0 4 100 0 64 25 0 0 75 0.81 ATTT chr1 31463041 31463075 trf 5 6.8 5 100 0 68 0 0 17 82 0.67 TTTTG chr1 31463569 31463753 trf 4 45.0 4 89 4 224 67 0 32 0 0.95 AAAG chr1 31463752 31463821 trf 4 17.2 4 100 0 138 24 0 75 0 0.81 GGAG chr1 31463999 31464034 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 31467157 31467221 trf 4 16.5 4 93 6 114 26 21 0 51 1.48 TATC chr1 31468340 31468374 trf 4 8.5 4 93 0 59 0 29 20 50 1.49 CTGT chr1 31468343 31468488 trf 8 17.4 8 70 16 71 3 32 13 51 1.57 TCTGTCTC chr1 31469298 31469348 trf 10 4.9 10 76 13 57 44 0 0 56 0.99 TATTTTAATA chr1 31469785 31469856 trf 2 38.0 2 70 13 53 52 4 1 42 1.29 AT chr1 31471110 31471136 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 31484826 31484867 trf 9 4.7 9 77 17 50 0 17 0 82 0.66 TTTTCTTTT chr1 31485821 31485927 trf 4 26.8 4 90 1 169 0 46 0 53 1.00 CTTC chr1 31492826 31492906 trf 8 10.0 8 78 4 72 45 18 5 31 1.71 ACATATAC chr1 31496667 31496702 trf 12 2.9 12 91 0 52 51 22 0 25 1.48 ATATACACATAC chr1 31496673 31496725 trf 6 8.8 6 77 12 54 53 25 1 19 1.55 ACATAC chr1 31498859 31498931 trf 5 14.8 5 91 5 121 79 0 20 0 0.74 GAAAA chr1 31498929 31499063 trf 4 33.2 4 87 4 180 49 0 50 0 1.00 AAGG chr1 31499038 31499084 trf 4 11.5 4 90 0 74 30 0 69 0 0.89 AGGG chr1 31500847 31500883 trf 12 3.0 12 92 8 56 16 75 0 8 1.04 TCCCCCACCCAC chr1 31503176 31503222 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 TA chr1 31508582 31508636 trf 9 5.9 9 77 12 56 14 3 0 81 0.82 TATTTTTTT chr1 31508602 31508635 trf 6 5.5 6 86 13 50 15 0 0 84 0.61 TTTATT chr1 31514325 31514616 trf 3 97.7 3 90 4 158 52 0 46 1 1.07 AAG chr1 31514868 31514923 trf 2 27.5 2 100 0 110 0 49 0 50 1.00 TC chr1 31514922 31514972 trf 2 25.0 2 87 0 73 6 0 44 50 1.26 TG chr1 31517334 31517379 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 31518306 31518422 trf 2 59.0 2 81 3 74 41 5 7 45 1.55 AT chr1 31519603 31519636 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 31519641 31519722 trf 2 40.5 2 93 0 135 51 2 45 0 1.14 AG chr1 31530042 31530091 trf 2 24.5 2 91 0 80 46 2 2 48 1.25 TA chr1 31535352 31535378 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 TA chr1 31535657 31535708 trf 4 12.8 4 95 0 93 21 0 27 50 1.48 TGTA chr1 31536803 31536867 trf 2 32.0 2 79 0 65 4 4 42 48 1.45 GT chr1 31536909 31536951 trf 12 3.3 12 84 12 57 16 9 33 40 1.81 ATGTGTGTGTAC chr1 31540350 31540414 trf 2 32.0 2 80 0 65 56 39 3 1 1.25 CA chr1 31540624 31540701 trf 8 9.5 8 80 8 57 49 37 9 3 1.53 CACAGACA chr1 31540666 31540702 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 31541547 31541586 trf 12 3.2 12 89 7 60 38 0 0 61 0.96 TATTTAAAATTT chr1 31554646 31554692 trf 2 23.0 2 95 0 83 47 50 0 2 1.13 CA chr1 31556923 31556954 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 31557122 31557175 trf 9 5.8 9 90 2 70 26 69 3 0 1.05 CCCCACAAC chr1 31558023 31558100 trf 3 25.7 3 100 0 154 0 33 0 66 0.92 TCT chr1 31561571 31561599 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 31561601 31561673 trf 2 36.0 2 97 0 135 51 0 48 0 1.00 AG chr1 31565039 31565065 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 31569009 31569050 trf 3 13.7 3 100 0 82 65 0 0 34 0.93 ATA chr1 31569940 31570002 trf 12 4.7 14 84 8 69 56 14 27 1 1.48 CAGAGAAACAGAGA chr1 31570206 31570244 trf 6 6.5 6 81 6 51 34 0 65 0 0.93 AGAGGG chr1 31571175 31571220 trf 4 10.2 4 90 9 54 0 73 0 26 0.84 TCCC chr1 31571217 31571269 trf 4 13.0 4 91 0 86 0 50 0 50 1.00 CCTT chr1 31571931 31572011 trf 3 27.3 3 77 14 78 0 60 1 38 1.05 TCC chr1 31572428 31572498 trf 2 35.5 2 88 2 106 0 55 0 44 0.99 CT chr1 31582000 31582104 trf 4 25.8 4 96 1 190 0 25 0 74 0.83 TTTC chr1 31582104 31582165 trf 2 30.5 2 96 0 113 0 47 0 52 1.00 TC chr1 31587390 31587425 trf 1 35.0 1 88 0 52 94 0 0 5 0.32 A chr1 31596628 31596700 trf 2 36.0 2 100 0 144 0 50 0 50 1.00 TC chr1 31596697 31596722 trf 4 6.2 4 100 0 50 0 76 0 24 0.80 CTCC chr1 31598366 31598424 trf 3 19.3 3 100 0 116 0 65 0 34 0.93 TCC chr1 31598422 31598552 trf 3 43.3 3 96 0 242 0 32 0 67 0.91 CTT chr1 31605447 31605508 trf 9 6.6 10 75 17 60 49 3 1 45 1.28 ATATATATAT chr1 31605447 31605508 trf 2 33.0 2 76 15 60 49 3 1 45 1.28 AT chr1 31607132 31607175 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 31612921 31612978 trf 1 57.0 1 89 0 87 94 0 5 0 0.30 A chr1 31622477 31622614 trf 5 28.8 5 73 17 82 78 21 0 0 0.76 AAAAC chr1 31622484 31622621 trf 4 34.0 4 76 15 90 78 21 0 0 0.76 AAAC chr1 31624758 31624802 trf 10 4.5 10 80 5 54 11 2 31 54 1.48 TGTGTGTATA chr1 31629271 31629358 trf 4 21.8 4 97 0 165 26 0 73 0 0.83 AGGG chr1 31630640 31630700 trf 2 30.0 2 96 0 111 51 48 0 0 1.00 AC chr1 31635424 31635495 trf 6 12.5 6 85 8 69 0 1 19 78 0.82 TTTGTT chr1 31635425 31635492 trf 3 23.7 3 76 14 54 0 1 20 77 0.85 TTG chr1 31635911 31635966 trf 2 27.0 2 96 3 101 49 49 0 1 1.11 AC chr1 31636483 31636566 trf 4 20.8 4 89 0 130 25 28 0 45 1.54 TATC chr1 31642139 31642245 trf 8 13.2 8 85 4 133 0 45 4 49 1.29 TCTCTCTC chr1 31642139 31642245 trf 6 17.7 6 89 3 133 0 45 4 49 1.29 TCTCTC chr1 31644380 31644451 trf 4 17.8 4 94 0 124 0 73 1 25 0.92 CCTC chr1 31644448 31644508 trf 4 15.0 4 96 0 111 0 48 0 51 1.00 CCTT chr1 31646312 31646350 trf 4 9.8 4 94 5 69 23 0 0 76 0.79 TTTA chr1 31648544 31648621 trf 2 38.5 2 81 0 82 53 40 3 2 1.33 AC chr1 31650782 31651068 trf 2 152.0 2 76 11 275 46 0 52 0 1.06 AG chr1 31651648 31651690 trf 6 7.3 6 87 12 54 0 0 11 88 0.53 TTGTTT chr1 31652112 31652155 trf 4 10.8 4 100 0 86 23 0 0 76 0.78 TTTA chr1 31652775 31652890 trf 5 23.0 5 97 2 214 0 20 19 60 1.37 CTTTG chr1 31657760 31657797 trf 4 9.2 4 93 0 65 45 2 24 27 1.66 TGAA chr1 31657963 31658008 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 31663191 31663226 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 31664522 31664576 trf 1 54.0 1 84 0 54 0 0 11 88 0.50 T chr1 31664869 31664899 trf 8 3.8 8 95 0 51 23 20 26 30 1.98 ATGTGCAC chr1 31664894 31664939 trf 2 22.5 2 95 0 81 0 2 48 48 1.13 TG chr1 31665718 31665763 trf 2 22.5 2 90 0 72 2 0 44 53 1.13 TG chr1 31670645 31670703 trf 2 29.0 2 96 0 107 50 1 0 48 1.11 AT chr1 31670967 31671033 trf 4 16.5 4 90 6 107 0 48 0 51 1.00 TCCT chr1 31671123 31671301 trf 8 22.2 8 82 8 161 0 38 11 49 1.44 TCTGTCTC chr1 31671127 31671301 trf 6 29.0 6 83 0 159 0 38 11 49 1.43 TCTCTC chr1 31674551 31674580 trf 12 2.3 13 94 5 51 72 0 17 10 1.11 AAGAAAGAAATTA chr1 31679196 31679224 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 31682362 31682444 trf 4 20.5 4 88 5 121 0 24 1 74 0.89 TCTT chr1 31682441 31682492 trf 4 12.8 4 100 0 102 0 49 0 50 1.00 TTCC chr1 31690674 31690717 trf 2 21.5 2 90 0 68 0 4 51 44 1.22 GT chr1 31694810 31694842 trf 10 3.2 10 95 0 55 6 0 0 93 0.34 TTTTTTTTTA chr1 31705256 31705300 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 31706124 31706160 trf 4 8.8 4 87 6 54 77 19 2 0 0.88 AAAC chr1 31707539 31707596 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 31712737 31712781 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 31719866 31719911 trf 2 23.0 2 95 4 83 0 0 51 48 1.00 TG chr1 31723406 31723457 trf 4 12.8 4 95 0 93 27 23 23 25 2.00 TGAC chr1 31724910 31724946 trf 4 9.0 4 93 0 63 27 25 0 47 1.52 TCTA chr1 31729018 31729148 trf 12 10.4 12 72 14 61 43 2 2 51 1.27 TATATTATATAT chr1 31729018 31729063 trf 2 23.0 2 95 4 83 48 0 0 51 1.00 TA chr1 31735903 31735994 trf 3 30.3 3 76 8 60 45 0 54 0 0.99 GAG chr1 31735906 31735994 trf 9 9.8 9 75 9 72 45 0 54 0 0.99 GAGGAGGAA chr1 31741782 31741810 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 GTTT chr1 31742278 31742375 trf 3 32.3 3 100 0 194 67 0 32 0 0.91 AGA chr1 31746519 31746603 trf 2 42.0 2 75 9 73 1 45 4 48 1.31 TC chr1 31754679 31754704 trf 12 2.1 12 100 0 50 0 8 0 92 0.40 TCTTTTTTTTTT chr1 31760918 31760949 trf 6 5.2 6 96 0 53 0 48 16 35 1.46 CTGCCT chr1 31764980 31765022 trf 2 21.5 2 80 4 50 50 0 47 2 1.14 AG chr1 31765692 31765785 trf 4 23.2 4 86 0 105 6 3 43 47 1.45 GTGT chr1 31770807 31770833 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 AT chr1 31781789 31781829 trf 3 13.3 3 100 0 80 67 0 0 32 0.91 AAT chr1 31788516 31788557 trf 3 13.7 3 100 0 82 31 0 0 68 0.90 TTA chr1 31798568 31798631 trf 11 5.6 11 81 7 74 85 12 0 1 0.66 AAAAAAAAAAC chr1 31798568 31798626 trf 7 8.1 7 86 9 73 86 13 0 0 0.58 AAAACAA chr1 31803522 31803574 trf 8 6.9 8 85 12 58 0 0 17 82 0.66 TTTTTTGT chr1 31803522 31803574 trf 9 5.7 9 78 13 61 0 0 17 82 0.66 TTTTTGGTT chr1 31805596 31805647 trf 4 12.8 4 87 0 75 47 21 3 27 1.68 ATAC chr1 31807206 31807257 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 31813434 31813475 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 31813735 31813785 trf 3 16.7 3 91 0 82 32 30 2 36 1.69 TAC chr1 31823010 31823078 trf 2 34.0 2 93 0 118 0 52 0 47 1.00 CT chr1 31831473 31831514 trf 12 3.1 14 80 16 52 36 0 4 58 1.20 TATTATATATTATG chr1 31833848 31833931 trf 2 41.5 2 92 0 139 1 1 46 50 1.16 TG chr1 31838609 31838651 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 31843064 31843094 trf 9 3.2 9 90 9 51 0 13 0 86 0.57 TTTTTCTTT chr1 31847063 31847091 trf 5 5.6 5 100 0 56 82 17 0 0 0.68 AAAAC chr1 31849999 31850026 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 31856943 31856974 trf 3 10.3 3 100 0 62 32 0 0 67 0.91 TTA chr1 31858902 31858936 trf 2 17.5 2 93 6 61 50 50 0 0 1.00 AC chr1 31869010 31869048 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 31869793 31869836 trf 2 21.5 2 95 0 77 0 0 46 53 1.00 TG chr1 31869908 31869934 trf 12 2.2 12 100 0 52 84 0 7 7 0.77 AAATAAGAAAAA chr1 31871091 31871142 trf 3 17.0 3 95 0 84 33 3 0 62 1.13 TAT chr1 31876040 31876084 trf 12 3.7 12 87 0 70 0 38 9 52 1.33 CTCTCTCTCTGT chr1 31877901 31877931 trf 8 3.8 8 95 0 51 26 10 0 63 1.26 TTTATTAC chr1 31878132 31878163 trf 12 2.5 13 94 5 55 32 0 67 0 0.91 GAAGGGAGGGAGG chr1 31878173 31878202 trf 6 4.8 6 100 0 58 51 13 34 0 1.42 AGAGAC chr1 31878212 31878271 trf 5 11.8 5 77 0 64 64 11 22 1 1.35 AAAGC chr1 31878537 31878574 trf 4 9.2 4 100 0 74 24 0 0 75 0.80 TTTA chr1 31878617 31878994 trf 5 70.0 5 90 6 256 55 1 42 0 1.09 AGGAA chr1 31878765 31878856 trf 7 13.1 7 96 1 157 69 2 28 0 1.00 AAAGGAA chr1 31880184 31880219 trf 4 8.8 4 93 0 61 28 0 20 51 1.47 TATG chr1 31880631 31880670 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 31881053 31881091 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 31881118 31881149 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 31881148 31881186 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 31883628 31883676 trf 4 12.0 4 100 0 96 50 0 25 25 1.50 ATAG chr1 31883811 31883840 trf 7 4.1 7 100 0 58 0 0 27 72 0.85 TGTTTTG chr1 31885466 31885519 trf 7 7.3 7 79 8 52 1 11 3 83 0.87 TTTTCTT chr1 31893822 31893890 trf 2 35.5 2 85 8 97 47 51 0 1 1.09 CA chr1 31894092 31894163 trf 2 36.0 2 84 2 90 49 45 4 1 1.30 AC chr1 31894356 31894390 trf 5 6.8 5 86 0 50 55 2 2 38 1.30 AATTA chr1 31897022 31897058 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 TA chr1 31897057 31897094 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 31897207 31897428 trf 6 34.7 6 78 11 174 58 0 39 0 1.11 GAAAAG chr1 31899656 31899789 trf 6 22.5 6 93 3 135 27 0 23 49 1.50 TATGTA chr1 31899818 31899933 trf 6 18.5 6 70 13 63 48 20 2 28 1.62 CATATA chr1 31899823 31899930 trf 8 13.4 8 70 11 58 49 19 2 28 1.62 ATATACAC chr1 31901568 31901607 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 31905086 31905126 trf 2 20.0 2 94 0 71 0 0 47 52 1.00 TG chr1 31906820 31906998 trf 9 19.2 9 86 5 239 2 53 0 44 1.13 CTTCCCCTT chr1 31906916 31906956 trf 12 3.6 12 83 16 59 7 42 0 50 1.30 CTTCTTCACCTT chr1 31906925 31906956 trf 12 2.6 12 100 0 62 6 41 0 51 1.27 CTTCTTCACCTT chr1 31906967 31907064 trf 7 13.9 7 79 12 94 2 64 2 30 1.16 CTTCCCC chr1 31907056 31907131 trf 5 15.0 5 98 0 123 0 56 0 44 0.99 CCCTT chr1 31907057 31907147 trf 10 9.0 10 92 0 63 0 50 0 50 1.00 CCTTTCCTTT chr1 31907414 31907505 trf 3 30.7 3 97 2 175 0 31 0 68 0.90 TTC chr1 31917916 31917941 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 31918820 31918874 trf 2 27.0 2 84 0 72 51 42 0 5 1.25 AC chr1 31925131 31925180 trf 2 24.5 2 91 0 80 51 4 0 44 1.20 AT chr1 31928329 31928362 trf 11 3.1 11 82 8 50 3 0 27 69 1.03 GTTTTGTTTTG chr1 31939899 31939938 trf 4 9.8 4 100 0 78 25 0 0 74 0.82 ATTT chr1 31945461 31945496 trf 5 7.0 5 93 0 61 57 20 0 22 1.41 CATAA chr1 31949245 31949292 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 31949364 31949515 trf 4 37.8 4 85 2 205 0 27 2 68 1.07 TCTT chr1 31950335 31950387 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 GT chr1 31952667 31952698 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 31952695 31952845 trf 12 12.2 12 79 8 113 50 16 32 0 1.51 ACAGACAGAGAG chr1 31952695 31952818 trf 12 10.6 12 76 13 114 51 15 33 0 1.44 ACAGAGACAGAG chr1 31952695 31952824 trf 8 15.6 8 80 3 105 51 15 33 0 1.44 ACAGAGAG chr1 31952697 31952820 trf 6 20.5 6 81 0 75 51 14 34 0 1.43 AGAGAG chr1 31952697 31952820 trf 4 30.8 4 79 0 75 51 14 34 0 1.43 AGAG chr1 31971908 31972101 trf 6 31.8 6 81 12 216 0 69 0 30 0.93 CTCTCC chr1 31974820 31974864 trf 3 14.7 3 100 0 88 65 0 0 34 0.93 TAA chr1 31976438 31976488 trf 2 25.0 2 95 0 91 0 0 48 52 1.00 GT chr1 31979316 31979353 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 31980451 31980505 trf 2 26.5 2 96 3 99 48 1 0 50 1.11 TA chr1 31980518 31980621 trf 6 17.5 6 81 4 93 10 21 21 46 1.81 TGTCTA chr1 31980626 31980675 trf 4 12.2 4 100 0 98 24 24 0 51 1.49 TCTA chr1 31981935 31982080 trf 4 36.5 4 97 1 202 0 31 0 68 0.89 TTTC chr1 31982079 31982121 trf 4 10.5 4 100 0 84 0 73 0 26 0.83 TCCC chr1 31984600 31984677 trf 2 39.0 2 75 2 66 46 41 3 7 1.51 CA chr1 31985082 31985115 trf 10 3.3 10 95 0 57 39 12 21 27 1.88 GATAGATCAT chr1 31988138 31988238 trf 12 7.5 13 74 13 53 70 3 25 2 1.12 AAAGAAACAAAGA chr1 31988228 31988478 trf 6 45.0 6 96 4 344 65 0 34 0 0.93 AGAAAG chr1 31992012 31992043 trf 5 6.2 5 100 0 62 0 0 19 80 0.71 TTTGT chr1 31997166 31997204 trf 4 9.5 4 100 0 76 0 50 0 50 1.00 CTTC chr1 31997201 31997237 trf 4 9.0 4 100 0 72 0 75 0 25 0.81 CCTC chr1 31999938 31999987 trf 5 9.8 5 83 16 50 0 0 18 81 0.69 TTTTG chr1 31999938 31999988 trf 6 8.7 6 82 12 61 0 0 18 82 0.68 TTTTGT chr1 31999939 31999988 trf 10 4.9 10 78 16 57 0 0 18 81 0.69 TTTGTTTTTG chr1 32004824 32004886 trf 4 15.5 4 96 0 106 50 3 24 22 1.64 ATAG chr1 32006195 32006249 trf 2 27.0 2 76 0 54 48 1 5 44 1.37 TA chr1 32009938 32009981 trf 4 10.8 4 100 0 86 23 0 25 51 1.49 TGTA chr1 32014534 32014605 trf 12 5.6 12 91 6 97 54 0 45 0 0.99 AAAGAGAGAGAG chr1 32014536 32014599 trf 2 31.5 2 93 0 108 53 0 46 0 1.00 AG chr1 32014596 32014683 trf 3 29.0 3 97 0 165 65 0 34 0 0.93 AGA chr1 32014606 32014791 trf 6 31.3 6 90 5 99 50 0 49 0 1.00 GAAGAG chr1 32014681 32014793 trf 3 37.3 3 88 0 170 38 0 61 0 0.96 GAG chr1 32014799 32014834 trf 10 3.5 10 84 0 52 54 11 34 0 1.37 AGAGAGACAG chr1 32024564 32024597 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 32026903 32026935 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 32026936 32026987 trf 4 12.8 4 100 0 102 49 0 25 25 1.51 GATA chr1 32028509 32028548 trf 5 7.8 5 100 0 78 0 0 20 79 0.73 TTTGT chr1 32034767 32034802 trf 8 4.4 8 88 0 52 25 2 8 62 1.38 ATTTAGTT chr1 32041859 32041902 trf 2 21.5 2 90 0 68 51 44 0 4 1.22 AC chr1 32042534 32042627 trf 2 46.5 2 83 0 114 50 41 6 1 1.35 AC chr1 32060795 32060852 trf 2 28.5 2 92 0 96 52 45 0 1 1.11 AC chr1 32063227 32063293 trf 6 10.7 6 78 18 73 0 0 16 83 0.65 TTTTGT chr1 32076381 32076448 trf 2 33.5 2 90 0 107 47 47 0 4 1.22 AC chr1 32078857 32078944 trf 6 16.0 6 77 20 102 0 55 0 44 0.99 TCTCTC chr1 32078907 32078938 trf 3 10.3 3 92 0 53 0 64 0 35 0.94 CCT chr1 32078971 32078997 trf 3 8.7 3 100 0 52 34 30 0 34 1.58 TAC chr1 32078995 32079025 trf 3 10.0 3 100 0 60 66 0 0 33 0.92 TAA chr1 32081010 32081051 trf 2 20.5 2 89 0 64 51 43 2 2 1.28 AC chr1 32081156 32081204 trf 2 24.0 2 91 0 78 47 47 2 2 1.25 AC chr1 32083844 32083877 trf 2 16.5 2 93 0 57 51 48 0 0 1.00 CA chr1 32084570 32084628 trf 2 29.0 2 100 0 116 0 0 50 50 1.00 GT chr1 32086813 32086857 trf 4 11.0 4 100 0 88 0 50 25 25 1.50 TGCC chr1 32090724 32090769 trf 7 6.6 7 92 5 74 84 0 13 2 0.72 AAAAAAG chr1 32091084 32091195 trf 2 54.0 2 78 8 107 48 5 4 41 1.46 AT chr1 32094784 32094809 trf 12 2.1 12 100 0 50 40 16 8 36 1.77 TGACACTATTAA chr1 32101363 32101421 trf 2 29.0 2 96 0 107 0 0 48 51 1.00 TG chr1 32106301 32106364 trf 2 32.0 2 90 3 101 1 46 0 52 1.10 CT chr1 32108350 32108424 trf 5 14.8 5 100 0 148 0 39 20 40 1.52 TGCTC chr1 32109106 32109153 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 32112222 32112259 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 32113321 32113377 trf 2 29.0 2 82 13 55 48 0 5 46 1.25 TA chr1 32116981 32117028 trf 2 23.5 2 100 0 94 48 0 0 51 1.00 TA chr1 32117562 32117653 trf 4 23.0 4 95 2 166 74 0 25 0 0.82 AAAG chr1 32117650 32117705 trf 4 13.8 4 100 0 110 50 0 49 0 1.00 AAGG chr1 32119977 32120030 trf 2 26.5 2 88 0 79 1 3 47 47 1.31 GT chr1 32121483 32121551 trf 4 17.0 4 96 0 109 45 0 29 25 1.54 ATAG chr1 32122347 32122395 trf 4 12.8 4 87 12 75 0 25 22 52 1.48 TCTG chr1 32122396 32122424 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 32122442 32122501 trf 2 29.5 2 96 0 109 0 50 0 49 1.00 TC chr1 32122500 32122550 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 32126469 32126529 trf 7 8.7 7 79 17 72 83 16 0 0 0.65 AAACAAA chr1 32129225 32129262 trf 2 18.5 2 94 0 65 54 0 45 0 1.00 AG chr1 32129676 32129721 trf 4 11.2 4 95 0 81 24 2 0 73 0.95 TTAT chr1 32132865 32132896 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 32133175 32133207 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 32137726 32137766 trf 12 3.6 12 80 16 50 45 0 55 0 0.99 AAGAGGAGGAGG chr1 32142541 32142584 trf 2 21.5 2 95 0 77 0 2 48 48 1.14 TG chr1 32142583 32142688 trf 8 13.2 8 73 18 62 47 9 3 39 1.54 TATACATA chr1 32142587 32142688 trf 10 10.3 10 75 8 57 47 9 3 38 1.55 ATATATACAT chr1 32142644 32142688 trf 2 21.5 2 82 13 54 50 6 0 43 1.29 AT chr1 32142694 32142719 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 32145458 32145509 trf 2 25.5 2 91 0 84 3 0 47 49 1.20 TG chr1 32146782 32146838 trf 2 28.0 2 100 0 112 50 0 0 50 1.00 TA chr1 32149764 32149823 trf 5 11.8 5 78 7 66 40 11 23 23 1.88 TAGAC chr1 32155006 32155045 trf 2 19.5 2 100 0 78 0 51 0 48 1.00 CT chr1 32155044 32155070 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 32155069 32155106 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 32156521 32156574 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 32157068 32157112 trf 5 9.6 5 81 16 51 2 15 0 81 0.78 TTTCT chr1 32157072 32157111 trf 9 4.5 8 82 17 51 2 15 0 82 0.79 TTTTCTTT chr1 32161466 32161532 trf 2 33.0 2 96 0 123 48 0 51 0 1.00 AG chr1 32169921 32170153 trf 8 29.5 8 86 5 105 0 42 0 56 1.06 CTTCTTTC chr1 32169958 32170033 trf 4 18.8 4 100 0 150 0 50 0 49 1.00 CCTT chr1 32170030 32170066 trf 4 9.0 4 100 0 72 0 75 0 25 0.81 CCTC chr1 32170064 32170133 trf 4 17.2 4 100 0 138 0 24 0 75 0.81 TCTT chr1 32170183 32170235 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 32170232 32170275 trf 4 10.2 4 85 9 59 0 30 0 69 0.88 TCTT chr1 32174448 32174475 trf 8 3.4 8 100 0 54 48 0 0 51 1.00 ATTTAATA chr1 32175858 32175897 trf 8 5.0 8 87 6 53 84 0 15 0 0.62 AGAAAAAA chr1 32180359 32180420 trf 4 15.2 4 96 0 113 0 73 0 26 0.83 CCCT chr1 32181974 32182028 trf 3 18.0 3 84 0 72 33 0 7 59 1.25 TAT chr1 32182200 32182231 trf 8 3.9 8 100 0 62 64 25 9 0 1.24 CAAACAAG chr1 32186136 32186180 trf 3 14.0 3 90 9 70 31 0 0 68 0.90 TAT chr1 32186138 32186178 trf 10 4.1 10 96 3 73 30 0 0 70 0.88 TTATTATTAT chr1 32190140 32190198 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 32191310 32191365 trf 2 27.5 2 92 0 92 0 49 0 50 1.00 TC chr1 32191606 32191631 trf 11 2.3 11 100 0 50 32 8 28 32 1.86 AGAGATTGCTT chr1 32191947 32191978 trf 1 31.0 1 93 0 53 96 0 3 0 0.21 A chr1 32193140 32193196 trf 12 4.8 12 77 4 51 1 69 0 28 0.98 CTCCCCCTCTCC chr1 32198731 32198800 trf 12 5.5 12 75 13 59 34 20 0 44 1.52 ATATATCTATCT chr1 32198811 32198859 trf 2 24.0 2 80 0 51 47 0 4 47 1.21 TA chr1 32202170 32202224 trf 10 5.4 10 90 0 63 1 5 42 50 1.36 TGTGTGTCTG chr1 32202170 32202224 trf 12 4.5 12 92 0 72 1 5 42 50 1.36 TGTGTGTCTGTG chr1 32202178 32202224 trf 2 23.0 2 95 0 74 0 4 45 50 1.21 TG chr1 32211249 32211309 trf 2 30.0 2 100 0 120 0 50 0 50 1.00 TC chr1 32219602 32219672 trf 2 35.0 2 82 0 86 0 8 47 44 1.34 TG chr1 32219771 32219835 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 32220810 32220857 trf 4 11.8 4 82 13 53 78 17 2 2 0.94 AAAC chr1 32222008 32222090 trf 2 41.5 2 92 2 139 1 0 46 52 1.08 TG chr1 32222991 32223025 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 32224351 32224395 trf 2 22.0 2 90 0 70 47 47 2 2 1.27 AC chr1 32229669 32229738 trf 5 13.8 5 96 0 120 0 36 0 63 0.94 TTCTC chr1 32229737 32229788 trf 12 4.4 11 81 18 59 0 1 11 86 0.66 TTTTGTTTTTT chr1 32231586 32231618 trf 6 5.3 6 100 0 64 0 50 15 34 1.45 CTGCCT chr1 32231608 32231802 trf 8 24.2 8 98 0 379 0 49 12 38 1.41 CTCTGCCT chr1 32244378 32244437 trf 2 29.5 2 89 0 91 47 47 3 1 1.29 AC chr1 32251753 32251784 trf 4 7.8 4 92 0 53 77 19 0 3 0.90 AAAC chr1 32252468 32252509 trf 5 7.6 5 89 10 55 75 21 2 0 0.92 AACAA chr1 32256411 32256447 trf 4 9.0 4 93 0 63 0 2 25 72 0.98 GTTT chr1 32268390 32268446 trf 12 4.7 12 72 16 53 82 8 8 0 0.86 AAAAGAAAACAA chr1 32271511 32271551 trf 4 10.2 4 91 5 64 55 0 20 25 1.44 AATG chr1 32274421 32274557 trf 4 34.0 4 94 2 139 64 0 35 0 0.94 AAAG chr1 32274439 32274490 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 32274558 32274618 trf 12 5.1 12 74 11 61 35 1 63 0 1.05 AGGGAGGGAGGA chr1 32274613 32274652 trf 4 9.8 4 82 0 51 56 0 43 0 0.99 AGGA chr1 32281512 32281537 trf 12 2.1 12 100 0 50 32 8 8 52 1.60 TCATAATTATTG chr1 32282845 32282912 trf 4 16.8 4 100 0 134 74 0 25 0 0.82 AAGA chr1 32285403 32285483 trf 2 40.0 2 97 0 151 1 0 48 50 1.08 TG chr1 32285482 32285518 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 32286054 32286084 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 32290268 32290298 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 32293041 32293113 trf 2 37.5 2 76 8 69 4 2 43 50 1.36 GT chr1 32297182 32297229 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 32300584 32300632 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 32301305 32301357 trf 2 26.0 2 96 0 95 50 48 0 1 1.12 CA chr1 32305150 32305232 trf 10 8.4 10 77 5 60 0 42 7 50 1.30 CTCTCTCTCT chr1 32305150 32305232 trf 4 21.0 4 76 5 60 0 42 7 50 1.30 CTCT chr1 32305173 32305228 trf 10 5.7 10 85 8 69 0 36 10 52 1.37 TCTCTCTGTC chr1 32305175 32305232 trf 6 9.8 6 81 7 55 0 36 10 52 1.36 TCTCTG chr1 32321370 32321459 trf 8 11.4 8 81 11 80 0 0 15 84 0.63 TTTTTTGT chr1 32321378 32321460 trf 9 9.7 9 83 10 59 0 0 17 82 0.66 TTTTTGTTG chr1 32321410 32321459 trf 1 49.0 1 87 0 62 0 0 8 91 0.41 T chr1 32331628 32331696 trf 2 34.5 2 97 2 129 50 0 0 50 1.00 AT chr1 32336865 32336908 trf 2 21.5 2 95 0 77 2 0 46 51 1.13 TG chr1 32345773 32345798 trf 3 8.3 3 100 0 50 68 0 0 32 0.90 AAT chr1 32351643 32351678 trf 4 8.8 4 100 0 70 74 0 0 25 0.82 ATAA chr1 32355299 32355384 trf 12 6.9 12 75 15 59 41 2 11 44 1.54 TAGATATATATG chr1 32355799 32355913 trf 6 19.0 6 97 0 129 17 33 8 40 1.81 TCTCTA chr1 32358210 32358257 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 32358402 32358522 trf 5 24.8 5 93 6 212 0 60 0 40 0.97 TTCCC chr1 32358890 32359051 trf 2 81.5 2 78 2 137 44 3 51 0 1.24 AG chr1 32361161 32361227 trf 2 33.0 2 100 0 132 50 0 0 50 1.00 AT chr1 32362972 32363011 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 32363221 32363263 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 32363516 32363545 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 32367075 32367270 trf 6 32.5 6 85 0 228 0 7 42 49 1.35 TGTGTG chr1 32367079 32367270 trf 10 18.5 10 81 10 197 0 7 42 49 1.36 TGTGTGTGTC chr1 32369495 32369544 trf 3 16.3 3 91 0 80 30 2 2 65 1.15 TTA chr1 32369900 32370037 trf 6 22.8 6 91 0 76 0 63 0 35 1.00 CTCTCT chr1 32369900 32370023 trf 6 20.8 6 90 3 196 0 65 0 33 0.98 CTCTCC chr1 32379611 32379645 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 32386944 32387066 trf 4 30.5 4 84 0 91 36 13 0 50 1.43 ATAT chr1 32391703 32391755 trf 2 26.0 2 96 0 95 50 48 0 1 1.12 CA chr1 32400269 32400417 trf 2 76.0 2 80 5 160 4 2 43 50 1.32 GT chr1 32403004 32403077 trf 8 9.1 8 82 5 94 0 30 0 69 0.88 TTTCTTTC chr1 32403007 32403077 trf 12 5.8 12 90 6 115 0 31 0 68 0.90 CTTTCTTTCTTC chr1 32411064 32411109 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 32411263 32411314 trf 2 25.5 2 100 0 102 49 0 0 50 1.00 TA chr1 32413218 32413285 trf 8 8.4 8 75 11 66 0 0 19 80 0.71 TTTTTGTT chr1 32417846 32418047 trf 4 51.0 4 91 3 327 49 0 25 24 1.57 ATAG chr1 32420858 32420918 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 32420976 32421021 trf 1 45.0 1 93 0 72 95 2 2 0 0.31 A chr1 32423434 32423482 trf 12 4.2 12 86 5 64 22 0 25 52 1.48 TATGTATATGTG chr1 32431113 32431186 trf 4 18.0 4 72 18 53 68 1 2 27 1.11 AAAT chr1 32431295 32431351 trf 2 28.0 2 100 0 112 50 0 0 50 1.00 TA chr1 32434217 32434257 trf 7 5.7 7 85 8 55 0 0 17 82 0.67 TTTTTTG chr1 32439598 32439631 trf 9 3.5 10 88 12 52 57 15 18 9 1.63 ACAAAACTGG chr1 32442893 32442961 trf 2 34.0 2 84 0 82 50 41 0 8 1.34 AC chr1 32442897 32442961 trf 12 5.3 12 96 0 119 50 40 0 9 1.35 ACACACACACAT chr1 32443331 32443622 trf 8 35.6 8 85 7 311 49 40 0 9 1.36 ATACACAC chr1 32443333 32443618 trf 10 28.4 10 85 0 318 49 41 0 9 1.35 ACACACACAC chr1 32445956 32446138 trf 4 46.0 4 95 2 269 69 0 30 0 0.88 AGAA chr1 32448165 32448215 trf 3 16.7 3 85 8 66 66 2 4 28 1.21 AAT chr1 32452126 32452187 trf 4 15.2 4 100 0 122 50 0 24 24 1.49 AGAT chr1 32455931 32455965 trf 2 17.0 2 93 0 59 0 2 47 50 1.16 GT chr1 32459160 32459211 trf 5 10.2 5 91 0 75 5 0 19 74 1.02 TGTTT chr1 32461803 32461885 trf 2 41.0 2 97 0 155 0 48 0 51 1.00 TC chr1 32469076 32469157 trf 2 41.0 2 93 2 137 48 49 0 2 1.14 AC chr1 32474208 32474239 trf 2 15.5 2 93 0 53 51 45 0 3 1.17 AC chr1 32475489 32475650 trf 4 39.8 4 83 9 184 68 2 28 0 1.02 AGAA chr1 32475656 32475683 trf 4 6.8 4 100 0 54 25 0 74 0 0.83 AGGG chr1 32475680 32475734 trf 4 13.5 4 100 0 108 50 0 50 0 1.00 AGGA chr1 32477413 32477459 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 CT chr1 32482403 32482430 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 32482909 32482950 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 32482994 32483032 trf 4 9.5 4 100 0 76 23 0 0 76 0.79 TTAT chr1 32491670 32491716 trf 2 23.0 2 95 0 83 50 47 0 2 1.13 CA chr1 32502210 32502277 trf 4 14.8 5 85 14 60 0 0 19 80 0.71 TTTTG chr1 32502217 32502272 trf 4 12.8 4 86 9 65 0 0 21 78 0.76 TTTG chr1 32508441 32508487 trf 4 11.5 4 95 0 83 50 0 28 21 1.49 AGAT chr1 32513365 32513412 trf 8 5.9 8 97 0 76 29 25 25 19 1.98 CAGGATCT chr1 32514820 32514864 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 32515508 32515544 trf 4 9.0 4 100 0 72 75 0 0 25 0.81 AATA chr1 32518798 32519119 trf 12 26.6 12 67 21 72 73 22 1 2 1.04 CAAAAACAAAAC chr1 32518801 32518861 trf 4 15.5 4 83 13 81 76 21 1 0 0.87 AAAC chr1 32518887 32519119 trf 6 36.5 6 69 18 105 75 19 2 3 1.05 AACAAA chr1 32523344 32523379 trf 2 17.5 2 93 0 61 0 0 45 54 0.99 TG chr1 32525774 32525835 trf 8 7.6 8 79 0 50 45 6 4 42 1.51 TATATATA chr1 32527763 32527790 trf 5 5.4 5 100 0 54 0 0 37 62 0.95 TTGGT chr1 32527766 32527847 trf 4 20.0 4 81 11 78 0 0 28 71 0.86 GTTT chr1 32540042 32540070 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 32540069 32540117 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 32542331 32542375 trf 2 22.0 2 95 0 52 0 59 0 40 0.98 TC chr1 32542733 32542779 trf 2 23.0 2 95 0 83 47 50 2 0 1.13 AC chr1 32544484 32544961 trf 6 75.2 6 66 21 99 72 22 2 2 1.09 ACAAAA chr1 32544573 32544707 trf 4 35.5 4 65 24 53 73 22 2 1 1.06 AAAC chr1 32544651 32544885 trf 8 26.5 8 67 20 55 74 20 2 3 1.07 AAAACAAA chr1 32550121 32550178 trf 2 28.5 2 92 0 96 1 1 47 49 1.22 TG chr1 32556761 32556822 trf 3 20.7 3 86 3 88 1 65 1 31 1.12 TCC chr1 32556820 32556883 trf 3 20.7 3 93 3 108 0 34 0 65 0.93 TCT chr1 32556882 32556934 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 32558269 32558298 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 32558733 32558765 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 32562112 32562165 trf 2 26.5 2 96 0 97 49 1 0 49 1.12 TA chr1 32569141 32569193 trf 2 26.0 2 96 0 95 0 0 48 51 1.00 GT chr1 32581094 32581362 trf 5 54.2 5 95 2 173 52 0 46 0 1.05 AGAGA chr1 32581095 32581316 trf 5 44.8 5 94 2 268 46 0 52 0 1.06 GAGAG chr1 32583672 32583704 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 32584916 32584953 trf 12 3.2 12 88 11 60 51 21 27 0 1.48 AGACAGACAGAC chr1 32588770 32588820 trf 12 4.0 12 76 19 57 66 14 20 0 1.26 CAAGAACAAGAA chr1 32589160 32589231 trf 12 5.8 11 81 15 70 0 0 18 81 0.69 GTTTGTTTTTT chr1 32589165 32589226 trf 7 8.7 7 79 16 65 0 0 16 83 0.64 GTTTTTT chr1 32589168 32589231 trf 5 12.8 5 78 21 55 0 0 15 84 0.63 TTTTG chr1 32590107 32590181 trf 2 37.5 2 89 2 114 47 1 2 48 1.24 AT chr1 32590112 32590252 trf 12 12.1 12 77 10 87 42 6 5 46 1.51 TATATATGTATA chr1 32594425 32594479 trf 2 27.0 2 96 0 99 51 48 0 0 1.00 AC chr1 32596300 32596342 trf 4 10.5 4 100 0 84 52 23 0 23 1.47 AACT chr1 32597069 32597140 trf 2 35.5 2 91 0 97 1 5 46 46 1.35 TG chr1 32598077 32598123 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 32600194 32600240 trf 3 15.3 3 95 0 65 32 6 0 60 1.22 TAT chr1 32601106 32601141 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 32606552 32606629 trf 4 19.2 4 94 0 127 27 23 0 49 1.50 ATCT chr1 32606945 32606989 trf 4 11.0 4 100 0 88 25 25 0 50 1.50 ATCT chr1 32608432 32608472 trf 5 8.0 5 89 10 64 0 2 20 77 0.88 GTTTT chr1 32610990 32611052 trf 2 31.0 2 93 0 106 0 1 51 46 1.10 TG chr1 32611561 32611596 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 32615908 32615940 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 32617906 32617952 trf 2 23.0 2 95 0 83 0 47 0 52 1.00 TC chr1 32618712 32618828 trf 2 58.0 2 81 3 108 42 3 7 46 1.49 TA chr1 32618827 32618882 trf 2 27.5 2 96 0 101 50 47 0 1 1.11 AC chr1 32621881 32621928 trf 6 7.7 6 88 4 58 48 10 2 38 1.50 ATATAC chr1 32625600 32625631 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 32632474 32632531 trf 2 27.5 2 85 7 78 47 45 1 5 1.35 AC chr1 32636942 32636995 trf 5 9.3 6 83 8 51 83 15 0 1 0.74 AAACAA chr1 32636949 32636983 trf 5 6.8 5 100 0 68 82 17 0 0 0.67 AAAAC chr1 32638788 32638813 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 32643836 32643938 trf 8 12.8 8 98 0 177 50 8 15 25 1.73 ATAGATAC chr1 32648012 32648047 trf 12 2.9 12 95 0 61 5 0 42 51 1.25 TGTATGTGTGTG chr1 32648016 32648047 trf 2 15.5 2 93 0 53 3 0 45 51 1.17 TG chr1 32648554 32648592 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 32656879 32656908 trf 7 4.3 7 95 4 51 89 0 10 0 0.48 AAAAGAA chr1 32660746 32660785 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 32664701 32664763 trf 2 31.0 2 100 0 124 0 0 50 50 1.00 TG chr1 32672052 32672085 trf 1 33.0 1 100 0 66 100 0 0 0 0.00 A chr1 32672771 32672848 trf 2 38.5 2 89 0 118 1 1 51 45 1.17 GT chr1 32676494 32676532 trf 2 19.0 2 94 0 67 2 0 47 50 1.15 TG chr1 32678349 32678463 trf 4 28.0 4 94 3 138 66 0 33 0 0.92 AAAG chr1 32678367 32678408 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 32679603 32679679 trf 2 39.5 2 88 7 113 48 1 1 48 1.18 AT chr1 32695201 32695309 trf 5 21.6 5 99 0 180 0 43 0 56 0.99 TTCTC chr1 32695205 32695400 trf 5 42.0 5 94 2 114 0 49 0 50 1.04 CTTCC chr1 32696602 32696633 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 32697766 32697813 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 32698429 32698454 trf 6 4.2 6 100 0 50 0 52 16 32 1.44 CTGCCT chr1 32708218 32708262 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 32708935 32708991 trf 5 11.4 5 98 1 105 80 0 19 0 0.71 AAAGA chr1 32708991 32709019 trf 4 7.0 4 100 0 56 25 0 75 0 0.81 GAGG chr1 32709016 32709085 trf 4 17.2 4 100 0 138 50 0 49 0 1.00 AGGA chr1 32714979 32715014 trf 4 8.8 4 87 0 52 48 20 0 31 1.50 CATA chr1 32720866 32720951 trf 2 43.0 2 95 2 154 0 48 0 51 1.00 TC chr1 32725249 32725308 trf 4 14.8 4 96 0 109 0 47 25 27 1.52 CTGC chr1 32728082 32728228 trf 6 24.3 6 97 0 166 56 0 43 0 0.99 AGAAGA chr1 32730029 32730112 trf 7 10.7 7 75 18 67 83 13 1 2 0.81 AAAAACA chr1 32730030 32730102 trf 5 14.8 5 80 13 71 83 13 1 1 0.79 AAAAC chr1 32730035 32730114 trf 9 9.6 8 71 23 58 82 13 1 2 0.84 AAAACAAA chr1 32734124 32734157 trf 4 8.2 4 100 0 66 75 0 0 24 0.80 AAAT chr1 32734843 32734889 trf 6 7.7 6 92 0 74 36 2 60 0 1.09 AGAGGG chr1 32735178 32735208 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 32736331 32736358 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 32738283 32738347 trf 3 21.3 3 96 0 119 35 0 64 0 0.94 AGG chr1 32738737 32738778 trf 2 20.5 2 94 0 73 0 46 0 53 1.00 TC chr1 32739525 32739621 trf 4 24.2 4 87 6 142 53 1 45 0 1.07 AAGG chr1 32739775 32739862 trf 4 21.5 4 95 2 156 51 0 48 0 1.00 AAGG chr1 32743104 32743130 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 TA chr1 32747368 32747406 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 32748100 32748171 trf 2 36.0 2 91 2 117 50 0 49 0 1.00 GA chr1 32749894 32749924 trf 4 7.5 4 100 0 60 76 23 0 0 0.78 AAAC chr1 32759791 32759827 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 32761114 32761139 trf 4 6.2 4 100 0 50 28 24 0 48 1.52 ATTC chr1 32766040 32766077 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 32770519 32770608 trf 10 8.5 11 83 11 100 49 6 43 0 1.29 AGAGACGAGAG chr1 32770519 32770609 trf 6 15.0 6 90 4 119 48 6 44 0 1.29 AGAGAG chr1 32770519 32770609 trf 4 22.5 4 86 4 119 48 6 44 0 1.29 AGAG chr1 32771896 32771927 trf 3 10.3 3 100 0 62 67 32 0 0 0.91 AAC chr1 32774181 32774208 trf 9 3.0 9 100 0 54 55 11 33 0 1.35 AGGAAAGAC chr1 32781525 32781551 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 32783274 32783314 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 32783324 32783541 trf 4 54.2 4 92 0 335 52 0 24 21 1.50 TAGA chr1 32785268 32785328 trf 12 5.0 12 75 0 57 53 0 46 0 1.00 AAGGAAGAAGAG chr1 32791154 32791231 trf 2 38.5 2 94 0 136 2 0 49 48 1.15 TG chr1 32794568 32794651 trf 8 11.5 8 68 24 51 42 8 49 0 1.33 AGAGAGGC chr1 32802869 32802924 trf 2 27.5 2 96 0 74 0 7 49 43 1.30 TG chr1 32802926 32802978 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 32803981 32804021 trf 6 7.0 6 86 11 57 0 0 32 67 0.91 GGTTTT chr1 32806691 32806731 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 32819503 32819532 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 32820108 32820133 trf 12 2.1 12 100 0 50 52 40 0 8 1.31 ATACACACACAC chr1 32821486 32821583 trf 6 16.5 6 89 4 126 50 34 0 15 1.44 ACATAC chr1 32821550 32821585 trf 4 8.8 4 93 0 61 51 45 0 2 1.16 ACAC chr1 32821829 32821873 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 32821872 32821934 trf 2 31.0 2 96 0 115 51 0 48 0 1.00 AG chr1 32823569 32823600 trf 2 15.5 2 93 0 53 51 45 0 3 1.17 AC chr1 32824897 32824931 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 TG chr1 32826482 32826538 trf 2 28.0 2 100 0 112 50 50 0 0 1.00 CA chr1 32832920 32833054 trf 4 33.2 4 84 4 171 67 0 32 0 0.91 GAAA chr1 32835427 32835463 trf 4 9.0 4 100 0 72 75 25 0 0 0.81 CAAA chr1 32837221 32837275 trf 4 13.5 4 96 0 99 24 24 1 50 1.60 ATCT chr1 32837310 32837367 trf 8 7.1 8 100 0 114 50 12 36 0 1.40 ACAGAGAG chr1 32837312 32837369 trf 6 9.5 6 76 0 60 50 10 38 0 1.37 AGAGAG chr1 32839665 32839765 trf 4 25.0 4 89 0 155 53 0 46 1 1.07 GAAG chr1 32840095 32840132 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 32840588 32840640 trf 10 5.2 10 79 9 61 53 0 0 46 1.00 AATATTATAT chr1 32840698 32840742 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 32845395 32845439 trf 2 22.5 2 95 4 81 50 50 0 0 1.00 AC chr1 32848251 32848318 trf 2 33.5 2 96 0 125 1 0 47 50 1.10 TG chr1 32853540 32853621 trf 2 40.5 2 89 0 117 2 1 45 50 1.22 GT chr1 32857924 32857964 trf 3 13.3 3 100 0 80 67 0 0 32 0.91 AAT chr1 32858869 32858898 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 32861522 32861584 trf 12 4.9 13 86 11 76 0 3 12 83 0.75 TTCTTGTTTTTTG chr1 32861528 32861583 trf 6 8.8 6 84 7 74 0 1 14 83 0.73 TTTTTG chr1 32865133 32865159 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 32867040 32867175 trf 8 17.0 8 80 3 130 0 40 8 50 1.39 TCTCTCTC chr1 32867049 32867162 trf 12 8.8 12 74 14 91 0 38 10 50 1.37 TCTGTCTCTCTG chr1 32867955 32868042 trf 3 29.0 3 100 0 174 66 0 33 0 0.92 GAA chr1 32868210 32868246 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 32868267 32868315 trf 10 4.8 10 89 0 69 2 8 47 41 1.45 GTGTGTGTGC chr1 32868267 32868315 trf 4 12.0 4 81 0 51 2 8 47 41 1.45 GTGT chr1 32871490 32871667 trf 6 31.2 6 72 11 74 12 2 65 19 1.36 TGGGGA chr1 32872897 32872944 trf 2 24.0 2 95 4 87 51 48 0 0 1.00 AC chr1 32876401 32876449 trf 2 24.0 2 95 0 87 0 47 0 52 1.00 TC chr1 32876463 32876542 trf 10 7.9 10 100 0 158 50 10 39 0 1.36 ACAGAGAGAG chr1 32880282 32880315 trf 12 2.8 12 100 0 66 33 0 18 48 1.48 ATTGGAATTTTA chr1 32884403 32884540 trf 8 17.6 8 71 17 76 50 9 37 2 1.47 AGAGACAG chr1 32884433 32884474 trf 10 4.3 10 81 12 50 46 9 41 2 1.50 AGAGGCAGAG chr1 32884449 32884540 trf 2 46.5 2 73 8 62 51 8 39 0 1.33 AG chr1 32885257 32885308 trf 2 25.5 2 95 0 93 1 0 47 50 1.12 TG chr1 32885441 32885477 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 32898177 32898230 trf 2 26.5 2 100 0 106 49 50 0 0 1.00 CA chr1 32899468 32899822 trf 2 179.5 2 73 4 236 9 2 42 45 1.51 TG chr1 32901193 32901236 trf 4 10.8 4 100 0 86 74 0 0 25 0.82 ATAA chr1 32903577 32903623 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 32908627 32908698 trf 3 23.7 3 97 0 133 35 0 64 0 0.94 AGG chr1 32909112 32909226 trf 11 10.5 11 73 20 80 31 2 33 32 1.72 TGATGTAGTGA chr1 32909961 32909999 trf 12 3.0 13 88 7 60 0 2 21 76 0.91 GTTTGTTTTGTTT chr1 32909967 32909999 trf 4 7.8 4 93 6 55 0 0 21 78 0.76 TTTG chr1 32919106 32919150 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 AC chr1 32921863 32921954 trf 6 15.8 6 84 8 82 25 0 70 4 1.06 GGGAGA chr1 32927164 32927208 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 32927207 32927246 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 32927245 32927279 trf 12 2.8 12 86 0 50 0 70 0 29 0.87 CCTCCCCCTCTC chr1 32927641 32927708 trf 2 34.0 2 93 3 118 0 50 0 49 1.00 TC chr1 32927710 32927762 trf 8 6.5 8 86 0 68 11 0 38 50 1.39 TGTGTGTA chr1 32927710 32927767 trf 2 28.5 2 81 0 51 12 0 38 49 1.41 TG chr1 32931237 32931335 trf 4 24.5 4 100 0 196 75 0 24 0 0.80 AAAG chr1 32934894 32934936 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 32935546 32935581 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 32937997 32938096 trf 4 25.2 4 85 4 121 47 4 25 23 1.69 AGAT chr1 32938700 32938768 trf 4 17.0 4 84 0 91 47 1 26 25 1.61 AGAT chr1 32941996 32942057 trf 4 15.0 4 93 3 104 50 22 1 24 1.58 CATA chr1 32942299 32942325 trf 4 6.5 4 100 0 52 0 0 26 73 0.84 GTTT chr1 32949061 32949126 trf 2 32.5 2 96 0 121 49 0 1 49 1.10 AT chr1 32949654 32949683 trf 3 9.7 3 100 0 58 65 34 0 0 0.93 CAA chr1 32950005 32950083 trf 6 13.3 6 80 10 63 76 20 1 1 0.92 AAAAAC chr1 32950025 32950086 trf 3 21.7 3 83 12 69 75 24 0 0 0.80 AAC chr1 32953329 32953371 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 TG chr1 32953941 32953978 trf 4 9.5 4 91 5 58 45 0 24 29 1.53 ATAG chr1 32953982 32954018 trf 4 9.0 4 93 0 63 47 27 0 25 1.52 CATA chr1 32956532 32956568 trf 2 18.0 2 94 0 63 0 2 50 47 1.15 GT chr1 32956715 32956835 trf 4 29.2 4 82 11 64 64 0 35 0 0.94 AAGA chr1 32956747 32956795 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 AG chr1 32958244 32958291 trf 8 5.9 8 87 0 58 53 0 46 0 1.00 AGAGAGAA chr1 32958314 32958384 trf 4 17.5 4 93 0 122 28 0 71 0 0.86 AGGG chr1 32958456 32958497 trf 12 3.4 12 82 0 55 51 9 36 2 1.48 AGAGAGAGAGAC chr1 32960668 32960749 trf 2 40.5 2 84 0 108 44 48 0 7 1.31 CA chr1 32961722 32961766 trf 8 5.5 8 80 0 52 50 31 2 15 1.57 ATACACAC chr1 32962924 32962963 trf 5 7.8 5 94 0 69 61 35 0 2 1.10 AAACC chr1 32963056 32963091 trf 4 8.8 4 100 0 70 0 0 25 74 0.82 TTGT chr1 32967250 32967291 trf 2 20.5 2 94 0 73 0 0 46 53 1.00 TG chr1 32967377 32967460 trf 7 11.7 7 77 19 75 2 0 16 80 0.81 TTTTGTT chr1 32967377 32967460 trf 6 13.8 6 75 12 55 2 0 16 80 0.81 TTTTGT chr1 32969615 32969644 trf 6 4.8 6 100 0 58 86 13 0 0 0.58 AAAAAC chr1 32974612 32974649 trf 2 18.5 2 88 0 56 0 5 45 48 1.25 GT chr1 32981296 32981335 trf 2 19.5 2 94 0 69 51 46 0 2 1.14 AC chr1 32985267 32985306 trf 6 6.8 6 85 11 55 0 28 17 53 1.44 TCTGTC chr1 32987102 32987147 trf 2 22.5 2 95 0 81 48 48 0 2 1.13 AC chr1 32987146 32987174 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 32989471 32989500 trf 7 4.3 7 91 8 51 89 0 10 0 0.48 AAAAAGA chr1 32989667 32989700 trf 10 3.3 10 84 16 50 81 18 0 0 0.68 AAACAAACAA chr1 32991408 32991442 trf 5 6.6 5 89 3 50 2 0 32 64 1.08 TTTGG chr1 33001061 33001116 trf 4 14.5 4 81 14 64 74 21 3 0 0.97 AAAC chr1 33001274 33001416 trf 8 17.8 8 87 0 185 48 5 44 1 1.35 AGAGAGAG chr1 33001274 33001416 trf 6 23.7 6 88 0 185 48 5 44 1 1.35 AGAGAG chr1 33001465 33001532 trf 4 16.2 4 75 6 62 55 19 22 2 1.57 AGAC chr1 33001627 33001689 trf 2 31.5 2 85 3 72 50 41 3 4 1.40 AC chr1 33001793 33001859 trf 4 16.5 4 87 6 98 0 50 0 50 1.00 TTCC chr1 33003171 33003222 trf 2 25.5 2 95 0 93 49 1 0 49 1.12 TA chr1 33006331 33006393 trf 2 31.0 2 93 0 106 48 1 1 48 1.21 AT chr1 33009575 33009964 trf 3 132.0 3 80 9 201 0 45 0 54 1.02 TCT chr1 33021702 33021774 trf 7 10.4 7 81 12 87 83 13 2 0 0.76 AAAAACA chr1 33027624 33027653 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 33027650 33027677 trf 4 6.8 4 100 0 54 51 22 25 0 1.48 AGAC chr1 33028017 33028044 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 33031645 33031674 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 33037984 33038173 trf 12 16.4 12 71 9 72 0 28 20 50 1.52 TGTCTGTCTGTC chr1 33037984 33038215 trf 8 29.1 8 78 8 159 0 32 16 50 1.49 TGTCTCTC chr1 33037990 33038221 trf 10 22.9 10 76 11 114 0 32 16 50 1.49 TCTGTCTGTC chr1 33038006 33038217 trf 6 35.5 6 79 5 142 0 33 15 50 1.48 TCTGTC chr1 33038218 33038266 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 33039437 33039488 trf 2 25.5 2 100 0 102 0 0 50 49 1.00 GT chr1 33040315 33040357 trf 4 10.5 4 94 0 75 26 2 71 0 0.98 AGGG chr1 33040354 33040392 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 33040391 33040467 trf 4 19.0 4 100 0 152 75 0 25 0 0.81 AAGA chr1 33040493 33040525 trf 4 8.0 4 100 0 64 50 0 50 0 1.00 GGAA chr1 33040522 33040566 trf 4 11.0 4 100 0 88 50 25 25 0 1.50 GAAC chr1 33043463 33043492 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 33044396 33044477 trf 5 16.2 5 97 0 117 80 6 0 13 0.89 AAAAT chr1 33045276 33045314 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 33045443 33045488 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 33056911 33057070 trf 4 39.8 4 90 0 84 0 37 0 62 1.00 TTTC chr1 33056969 33057028 trf 2 29.5 2 96 0 109 1 47 0 50 1.11 TC chr1 33058053 33058097 trf 8 5.5 8 100 0 88 25 38 25 11 1.89 AGCCATGC chr1 33059986 33060049 trf 5 12.6 5 100 0 126 80 19 0 0 0.70 AAAAC chr1 33074009 33074193 trf 5 36.8 5 94 0 287 38 0 61 0 0.96 AGAGG chr1 33074492 33074660 trf 9 16.5 12 84 15 101 44 0 54 0 1.04 GAGAGAGAGAGA chr1 33074492 33074660 trf 6 33.0 6 65 32 101 44 0 54 0 1.04 GAGAGA chr1 33074546 33074628 trf 3 27.0 3 95 2 119 39 0 60 0 0.96 AGG chr1 33075614 33075639 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 33081581 33081674 trf 10 7.6 12 78 19 54 7 4 43 45 1.52 TGTGTGTGCATG chr1 33081591 33081680 trf 8 11.1 8 88 0 97 5 4 43 46 1.47 TGTGTGTG chr1 33081627 33081680 trf 6 8.8 6 93 0 88 1 1 45 50 1.23 TGTGTG chr1 33082823 33082862 trf 4 9.8 4 100 0 78 51 23 0 25 1.49 ATAC chr1 33083154 33083384 trf 2 115.0 2 80 1 120 0 35 13 49 1.49 CT chr1 33085674 33085720 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 33086035 33086158 trf 5 25.4 5 94 2 101 0 30 0 69 0.88 TTCTT chr1 33086037 33086126 trf 5 17.8 5 98 0 133 0 33 0 66 0.92 CTTTC chr1 33089233 33089293 trf 2 30.0 2 93 0 102 53 46 0 0 1.00 AC chr1 33091863 33091936 trf 2 37.5 2 91 5 123 1 50 0 47 1.09 TC chr1 33091943 33092002 trf 3 19.7 3 100 0 118 0 66 0 33 0.92 CTC chr1 33096777 33096854 trf 2 38.5 2 97 0 145 49 1 0 49 1.09 TA chr1 33099327 33099440 trf 5 22.6 5 99 0 172 54 0 45 0 0.99 AGAGA chr1 33100333 33100379 trf 4 11.8 4 95 4 85 50 0 23 26 1.50 ATAG chr1 33100357 33100510 trf 6 25.5 6 94 5 258 49 0 17 32 1.47 ATAGAT chr1 33100514 33100566 trf 2 27.0 2 88 7 72 3 0 46 50 1.20 TG chr1 33100618 33100666 trf 11 4.2 12 78 10 64 47 31 0 20 1.50 ACACATATACAC chr1 33104446 33104474 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 33107108 33107183 trf 4 18.8 4 100 0 150 74 0 25 0 0.82 AGAA chr1 33107181 33107245 trf 4 16.0 4 100 0 128 25 0 75 0 0.81 GAGG chr1 33107242 33107308 trf 4 16.5 4 100 0 132 50 0 50 0 1.00 AGGA chr1 33110333 33110377 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 33114076 33114120 trf 10 4.4 10 85 0 52 38 25 15 20 1.92 TGCACAGACA chr1 33119642 33119710 trf 3 22.3 3 87 3 91 35 0 63 1 1.04 GGA chr1 33119708 33119872 trf 3 54.7 3 84 7 208 63 0 34 1 1.05 AGA chr1 33128630 33128709 trf 2 40.0 2 89 2 124 1 50 0 48 1.08 CT chr1 33135234 33135259 trf 5 5.0 5 100 0 50 0 0 20 80 0.72 GTTTT chr1 33140993 33141030 trf 5 7.2 5 93 6 65 18 0 0 81 0.70 TTTTA chr1 33143714 33143745 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 33147510 33147579 trf 2 34.5 2 91 0 111 49 47 0 2 1.16 AC chr1 33149394 33149421 trf 4 6.8 4 100 0 54 22 0 25 51 1.48 TTGA chr1 33149424 33149496 trf 4 18.2 4 94 2 128 50 1 25 23 1.58 ATAG chr1 33149505 33149566 trf 4 15.0 4 98 1 113 73 0 24 1 0.92 AAGA chr1 33149590 33149649 trf 4 14.8 4 96 0 109 52 0 47 0 1.00 AAGG chr1 33149651 33149788 trf 4 35.2 4 80 8 158 46 2 25 25 1.64 ATAG chr1 33153440 33153511 trf 4 17.8 4 100 0 142 76 0 23 0 0.79 AAAG chr1 33155226 33155280 trf 2 27.0 2 96 0 90 46 0 3 50 1.19 TA chr1 33156712 33156748 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 33156748 33156784 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 33159126 33159172 trf 4 11.0 4 86 6 56 78 2 19 0 0.86 AAAG chr1 33159169 33159207 trf 4 9.5 4 100 0 76 52 0 47 0 1.00 AAGG chr1 33160574 33160601 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 33171292 33171340 trf 11 4.5 11 97 2 89 8 25 58 8 1.55 GGGGAGGCCCT chr1 33171664 33171716 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 33171713 33171792 trf 3 26.0 3 92 7 133 65 1 32 0 1.00 AGA chr1 33175490 33175536 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 33175544 33175580 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 33176512 33176593 trf 10 7.5 10 74 15 54 44 40 1 13 1.52 ACACATACAC chr1 33176512 33176617 trf 4 26.2 4 74 0 57 44 40 0 13 1.50 ACAC chr1 33177213 33177244 trf 12 2.6 12 94 0 53 41 0 58 0 0.98 AAGAGGAGGAGG chr1 33181053 33181089 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 33181587 33181641 trf 5 10.8 5 100 0 108 81 0 0 18 0.69 AAAAT chr1 33190086 33190126 trf 6 6.7 6 100 0 80 17 0 82 0 0.67 GGAGGG chr1 33195568 33195741 trf 12 14.4 12 86 2 231 54 0 43 1 1.07 AAGGAAGGAAGG chr1 33195568 33195741 trf 8 21.6 8 86 2 231 54 0 43 1 1.07 AAGGAAGG chr1 33199822 33199929 trf 6 17.8 6 97 0 160 5 33 10 50 1.60 TCTCTG chr1 33204839 33204866 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 33209471 33209625 trf 3 51.7 3 75 3 78 46 0 51 1 1.12 AGG chr1 33216011 33216105 trf 6 15.7 6 100 0 188 15 17 50 17 1.79 GCTGAG chr1 33216722 33216766 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 ATTT chr1 33216971 33217030 trf 1 59.0 1 86 0 82 0 6 0 93 0.36 T chr1 33218252 33218349 trf 6 16.7 6 93 6 173 32 0 17 49 1.47 TGTATA chr1 33218697 33218777 trf 1 80.0 1 77 0 79 88 11 0 0 0.51 A chr1 33220349 33220386 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 33239204 33239251 trf 12 3.9 12 94 0 76 2 38 8 51 1.45 TCTCTCTCTCTG chr1 33239204 33239251 trf 6 7.8 6 87 0 67 2 38 8 51 1.45 TCTCTG chr1 33239977 33240059 trf 2 41.0 2 89 4 121 3 1 45 50 1.27 GT chr1 33243207 33243260 trf 12 4.5 12 78 4 54 47 1 9 41 1.47 AATATATAATGT chr1 33249511 33249568 trf 2 28.5 2 96 0 105 50 49 0 0 1.00 CA chr1 33258599 33258644 trf 4 11.2 4 95 0 81 2 0 48 48 1.13 TGGT chr1 33267462 33267503 trf 4 10.5 4 89 5 66 2 0 24 73 0.96 GTTT chr1 33267812 33267847 trf 3 11.3 3 87 6 52 65 0 0 34 0.93 TAA chr1 33268098 33268123 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 33277200 33277258 trf 10 5.6 10 86 8 80 24 1 58 15 1.46 GAGGAGTTGG chr1 33277567 33277650 trf 4 20.8 4 92 0 103 0 54 1 44 1.08 CTTC chr1 33279895 33279931 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 33282307 33282378 trf 2 36.0 2 94 2 126 52 0 47 0 1.00 AG chr1 33284884 33284941 trf 4 14.2 4 100 0 114 50 24 0 24 1.49 ATAC chr1 33285223 33285275 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 33285909 33286048 trf 8 14.5 10 67 23 52 46 38 0 14 1.50 ACACATTCAC chr1 33285916 33286018 trf 2 52.0 2 66 11 50 47 40 0 11 1.47 CA chr1 33286450 33286528 trf 6 12.1 7 87 8 89 0 1 12 85 0.65 GTTTTTT chr1 33286451 33286520 trf 9 7.6 9 83 13 88 0 0 10 89 0.47 TTTTTTGTT chr1 33286451 33286520 trf 1 69.0 1 79 0 75 0 0 10 89 0.47 T chr1 33286452 33286528 trf 5 13.0 6 88 8 81 0 1 11 86 0.62 TTTTTG chr1 33289483 33289527 trf 2 22.0 2 85 0 61 50 2 47 0 1.13 GA chr1 33291865 33291957 trf 6 14.8 6 87 6 121 1 61 0 36 1.03 CTTCCC chr1 33292234 33292275 trf 4 10.2 4 100 0 82 24 0 51 24 1.49 GGAT chr1 33295185 33295224 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 33295223 33295248 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 33295351 33295429 trf 4 19.5 4 94 0 138 47 0 28 24 1.52 AGAT chr1 33296673 33296725 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 33306363 33306396 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 33306410 33306446 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 CA chr1 33312516 33312562 trf 2 23.0 2 91 8 76 0 2 47 50 1.13 GT chr1 33312903 33312928 trf 12 2.1 12 100 0 50 24 0 24 52 1.48 TGTGTATATGTA chr1 33314824 33314882 trf 4 14.5 4 96 0 107 50 1 22 25 1.59 TAGA chr1 33328424 33328559 trf 4 33.5 4 96 1 144 65 0 34 0 0.93 AAGA chr1 33345800 33345827 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 33350126 33350201 trf 6 12.5 6 88 0 87 0 40 9 50 1.35 TCTCTC chr1 33350126 33350201 trf 4 18.8 4 85 0 87 0 40 9 50 1.35 TCTC chr1 33352283 33352332 trf 3 16.7 3 85 4 64 0 2 26 71 0.97 TTG chr1 33353371 33353410 trf 2 19.5 2 94 0 69 48 48 2 0 1.15 AC chr1 33353762 33353796 trf 4 8.5 4 100 0 68 0 50 23 26 1.50 CTGC chr1 33353851 33353905 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 33357853 33357893 trf 11 3.6 11 83 9 55 0 67 0 32 0.91 CTCCCTCCCTC chr1 33361708 33361738 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 33364051 33364134 trf 2 41.5 2 77 0 67 12 0 37 50 1.40 TG chr1 33364177 33364228 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 33364562 33364592 trf 2 15.0 2 92 0 51 46 50 0 3 1.18 CA chr1 33364619 33364666 trf 4 12.0 4 95 4 87 48 0 25 25 1.51 GATA chr1 33366616 33366653 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 33369089 33369125 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 33369129 33369174 trf 3 15.0 3 80 0 54 66 0 33 0 0.92 AAG chr1 33369138 33369215 trf 6 13.3 6 86 5 79 53 0 46 0 1.00 AAGGAG chr1 33369172 33369213 trf 3 13.7 3 84 0 55 41 0 58 0 0.98 AGG chr1 33369358 33369419 trf 5 12.2 5 96 0 113 19 1 0 78 0.83 TTTAT chr1 33373782 33373914 trf 4 33.0 4 92 3 149 65 0 34 0 0.93 AGAA chr1 33373788 33374054 trf 8 32.6 8 83 8 146 57 0 42 0 1.02 AAGAAGGA chr1 33373852 33374050 trf 4 48.5 4 86 6 240 51 0 48 0 1.04 AAGG chr1 33375212 33375407 trf 4 50.0 4 88 5 247 45 0 28 26 1.54 AGAT chr1 33378671 33378746 trf 4 18.8 4 91 0 105 25 6 0 68 1.14 TTAT chr1 33380161 33380203 trf 3 13.7 3 95 5 75 33 0 0 66 0.92 TTA chr1 33387266 33387300 trf 8 4.2 8 84 0 50 11 23 26 38 1.89 CTGTGATC chr1 33388866 33388911 trf 2 22.5 2 95 0 81 0 0 48 51 1.00 GT chr1 33389325 33389369 trf 2 22.5 2 95 4 81 0 0 47 52 1.00 TG chr1 33393860 33393912 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 AG chr1 33396876 33396922 trf 2 23.5 2 95 4 85 0 0 50 50 1.00 TG chr1 33399332 33399374 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 33420489 33420541 trf 7 7.3 7 73 4 50 25 21 5 48 1.72 TATCATC chr1 33428366 33428397 trf 2 15.5 2 100 0 62 0 48 0 51 1.00 TC chr1 33428396 33428436 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 TG chr1 33428435 33428460 trf 2 12.5 2 100 0 50 48 0 52 0 1.00 GA chr1 33437686 33437807 trf 4 30.0 4 94 0 134 0 33 0 65 0.99 TTTC chr1 33438160 33438201 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 33445960 33445988 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 GTTT chr1 33453547 33453587 trf 4 10.0 4 100 0 80 0 0 50 50 1.00 GGTT chr1 33464168 33464312 trf 6 24.0 6 96 2 236 29 0 70 0 0.88 GGAGAG chr1 33467241 33467282 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 33471938 33471998 trf 4 15.0 4 100 0 120 50 0 25 25 1.50 TAGA chr1 33481709 33481742 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 33483969 33484005 trf 5 7.2 5 100 0 72 19 0 80 0 0.71 GGAGG chr1 33484255 33484289 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 33486150 33486251 trf 3 33.0 3 75 15 64 56 0 43 0 0.99 AAG chr1 33486190 33486342 trf 3 47.3 3 78 12 151 40 0 59 0 0.98 AGG chr1 33486340 33486430 trf 3 30.0 3 100 0 180 66 0 33 0 0.92 GAA chr1 33486671 33486719 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 33486718 33486744 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 33486781 33486821 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 TC chr1 33486879 33486923 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 33486922 33486956 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 33486991 33487043 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 33487042 33487078 trf 2 18.0 2 94 0 63 50 47 0 2 1.15 CA chr1 33491330 33491382 trf 4 13.0 4 100 0 104 25 0 75 0 0.81 GGGA chr1 33493365 33493391 trf 5 5.2 5 100 0 52 19 0 80 0 0.71 GGGAG chr1 33506090 33506128 trf 11 3.5 11 85 7 51 0 60 0 39 0.97 TCCCTCTTCCC chr1 33506290 33506324 trf 8 4.2 8 100 0 68 38 11 50 0 1.39 AGAGGCAG chr1 33510604 33510664 trf 2 30.0 2 96 0 111 50 48 0 1 1.11 CA chr1 33512477 33512503 trf 11 2.4 11 100 0 52 46 7 30 15 1.74 AGAGGTAATAC chr1 33516644 33516675 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 33531194 33531229 trf 6 6.2 6 87 12 56 0 65 0 34 0.93 CTCCCT chr1 33540426 33540457 trf 12 2.6 12 94 0 53 51 32 12 3 1.56 ACACACACAGAG chr1 33544311 33544353 trf 2 21.5 2 95 4 77 52 47 0 0 1.00 AC chr1 33544616 33544678 trf 4 15.5 4 96 0 97 0 56 0 43 0.99 CCTT chr1 33545103 33545133 trf 8 3.8 8 95 0 51 26 6 66 0 1.16 GGAGGGAC chr1 33545304 33545343 trf 6 6.1 7 80 19 50 41 15 12 30 1.85 GCATATA chr1 33546572 33546609 trf 8 4.6 8 96 0 65 51 32 16 0 1.45 AGACACAC chr1 33546572 33546611 trf 4 9.8 4 82 0 51 51 30 17 0 1.46 AGAC chr1 33563109 33563135 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 33574100 33574153 trf 4 13.8 4 88 7 83 50 26 0 22 1.49 ACAT chr1 33576762 33576816 trf 2 28.5 2 78 10 60 50 3 0 46 1.19 AT chr1 33582307 33582341 trf 4 8.5 4 100 0 68 26 47 0 26 1.53 ATCC chr1 33587711 33587747 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 33591477 33591512 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 33592588 33592649 trf 4 15.5 4 96 3 115 49 0 50 0 1.00 GGAA chr1 33602161 33602213 trf 8 6.5 8 97 0 86 32 0 67 0 0.91 AGGGAAGG chr1 33602161 33602213 trf 4 13.0 4 83 0 68 32 0 67 0 0.91 AGGG chr1 33605832 33605860 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 33613551 33613621 trf 4 18.0 4 80 11 83 30 0 70 0 0.88 GGAG chr1 33619944 33619973 trf 5 6.0 5 96 4 51 0 17 0 82 0.66 CTTTT chr1 33621422 33621448 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 33622147 33622174 trf 11 2.5 11 100 0 54 59 7 7 25 1.51 AAATATATGCA chr1 33625285 33625347 trf 4 15.5 4 79 0 61 0 9 41 48 1.36 GTGT chr1 33625297 33625347 trf 8 6.2 8 95 0 82 0 8 40 52 1.31 GTGTCTGT chr1 33628167 33628194 trf 11 2.5 11 100 0 54 33 22 7 37 1.82 CCATTAGTTAA chr1 33633127 33633166 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 33637132 33637162 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 33637164 33637196 trf 4 8.0 4 100 0 64 75 0 0 25 0.81 TAAA chr1 33646440 33646524 trf 4 21.0 4 97 0 141 71 3 25 0 1.02 AGAA chr1 33647274 33647309 trf 2 17.5 2 87 0 52 48 45 5 0 1.26 CA chr1 33647762 33647810 trf 2 24.0 2 86 0 69 47 47 2 2 1.25 AC chr1 33649772 33649816 trf 3 14.7 3 100 0 88 34 65 0 0 0.93 CAC chr1 33664208 33664238 trf 4 7.5 4 100 0 60 26 0 0 73 0.84 TATT chr1 33667377 33667434 trf 5 11.4 5 96 0 105 42 1 56 0 1.10 AAGGG chr1 33667567 33667597 trf 3 10.0 3 92 0 51 36 0 63 0 0.95 AGG chr1 33667598 33667626 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 33669043 33669107 trf 2 33.5 2 74 14 55 45 0 3 51 1.17 TA chr1 33671233 33671280 trf 1 47.0 1 82 0 58 91 8 0 0 0.42 A chr1 33671297 33671331 trf 5 6.8 5 87 12 52 79 20 0 0 0.73 AACAA chr1 33675288 33675314 trf 12 2.2 12 100 0 52 50 42 0 7 1.31 ACATACACACAC chr1 33677407 33677450 trf 2 21.5 2 95 0 77 48 48 2 0 1.14 CA chr1 33682675 33682711 trf 12 2.9 12 88 8 54 0 0 19 80 0.71 TTTTTTGTTTTG chr1 33684743 33684771 trf 12 2.3 12 100 0 56 78 21 0 0 0.75 AAAACCAAAAAC chr1 33684906 33684944 trf 7 5.4 7 90 0 58 81 15 2 0 0.80 CAAAAAA chr1 33690631 33690735 trf 6 17.3 6 95 0 127 32 24 0 42 1.61 ATATCT chr1 33690716 33690785 trf 12 5.9 12 84 6 70 27 21 0 50 1.49 TATCTATATATC chr1 33690728 33690771 trf 4 10.8 4 100 0 86 25 23 0 51 1.49 TATC chr1 33692625 33692672 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 33694517 33694581 trf 2 32.0 2 96 0 119 1 0 48 50 1.10 GT chr1 33694845 33694890 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 33698637 33698688 trf 4 13.0 4 95 4 95 0 23 0 76 0.79 TTTC chr1 33698867 33698901 trf 4 8.5 4 100 0 68 0 0 47 52 1.00 TTGG chr1 33701926 33701961 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 33702958 33702992 trf 5 6.8 5 100 0 68 20 20 0 58 1.39 CTATT chr1 33703756 33703791 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 33715554 33715606 trf 2 26.0 2 92 0 86 48 1 1 48 1.24 AT chr1 33715605 33715634 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 33716388 33716428 trf 4 10.0 4 100 0 80 75 0 25 0 0.81 GAAA chr1 33716439 33716506 trf 5 13.4 5 100 0 134 0 40 0 59 0.97 TCTCT chr1 33716735 33716776 trf 8 5.2 8 91 5 66 87 12 0 0 0.53 AAAAAAAC chr1 33721271 33721298 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 33727006 33727031 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 33727275 33727321 trf 1 46.0 1 82 0 56 0 0 8 91 0.43 T chr1 33730874 33730905 trf 4 7.8 4 92 0 53 48 25 3 22 1.66 ACAT chr1 33730941 33730984 trf 4 10.8 4 94 0 50 41 25 9 23 1.84 ACAT chr1 33731185 33731211 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 33731216 33731244 trf 4 7.0 4 100 0 56 0 25 25 50 1.50 TGTC chr1 33736504 33736625 trf 7 16.7 7 80 10 127 14 70 7 8 1.33 CACCCGC chr1 33744937 33744980 trf 1 43.0 1 95 0 68 95 4 0 0 0.27 A chr1 33749970 33750011 trf 1 41.0 1 100 0 82 0 0 0 100 0.00 T chr1 33750994 33751061 trf 5 12.6 5 87 12 98 58 0 41 0 0.98 AAAGG chr1 33750997 33751061 trf 11 5.9 11 98 1 121 56 0 43 0 0.99 GGAAAGGAAAG chr1 33752168 33752238 trf 6 11.7 6 96 0 131 50 15 0 34 1.45 CATATA chr1 33753456 33753488 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 33763024 33763056 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 33781986 33782011 trf 5 5.0 5 100 0 50 80 20 0 0 0.72 AAAAC chr1 33785112 33785167 trf 6 9.2 6 100 0 110 34 0 16 49 1.46 ATATGT chr1 33787441 33787496 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 33787738 33787768 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 33796457 33796495 trf 4 9.8 4 88 5 60 76 21 2 0 0.91 CAAA chr1 33799179 33799206 trf 12 2.2 12 100 0 54 7 25 37 29 1.83 TCTACTGGGGCG chr1 33810413 33810481 trf 4 17.0 4 100 0 136 25 25 50 0 1.50 GGCA chr1 33810524 33810558 trf 11 3.1 11 82 0 50 23 8 50 17 1.74 GTGAACGTGGG chr1 33815572 33815602 trf 8 3.8 8 90 0 51 90 10 0 0 0.47 CAAAAAAA chr1 33815788 33815828 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 CT chr1 33819178 33819236 trf 7 8.3 7 92 0 98 13 68 0 17 1.20 CCCACCT chr1 33820637 33820677 trf 4 9.8 4 97 2 71 22 0 0 77 0.77 TTTA chr1 33823539 33823573 trf 5 6.8 5 100 0 68 20 0 0 79 0.73 ATTTT chr1 33830660 33830703 trf 4 11.0 4 90 5 70 72 25 2 0 0.97 AAAC chr1 33831400 33831433 trf 10 2.9 12 82 17 52 39 0 9 51 1.34 TGTATATATATA chr1 33831404 33831435 trf 10 3.1 10 100 0 62 38 0 9 51 1.35 TATATATATG chr1 33833901 33833935 trf 12 2.8 12 95 0 59 0 41 8 50 1.34 TCTCTCTCTCTG chr1 33835806 33835833 trf 4 6.8 4 100 0 54 0 22 0 77 0.76 TTTC chr1 33843066 33843101 trf 9 4.0 9 88 7 54 0 0 20 80 0.72 GTTTGTTTT chr1 33843259 33843316 trf 2 28.5 2 92 0 96 50 47 1 0 1.11 CA chr1 33846542 33846581 trf 2 19.5 2 89 0 60 51 43 0 5 1.24 AC chr1 33868235 33868273 trf 2 19.0 2 94 0 67 0 2 47 50 1.15 TG chr1 33870821 33870846 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 33871702 33871744 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 33875635 33875676 trf 1 41.0 1 90 0 55 92 4 2 0 0.44 A chr1 33876403 33876435 trf 1 32.0 1 93 0 55 96 3 0 0 0.20 A chr1 33881814 33881844 trf 6 5.0 6 91 0 51 80 20 0 0 0.72 AAAAAC chr1 33884158 33884183 trf 4 6.2 4 100 0 50 72 0 0 28 0.86 TAAA chr1 33885214 33885244 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 33887084 33887123 trf 7 5.4 7 84 6 51 84 15 0 0 0.62 AAAAAAC chr1 33887597 33887644 trf 1 47.0 1 91 0 76 95 4 0 0 0.25 A chr1 33888111 33888148 trf 11 3.5 10 86 13 56 86 13 0 0 0.57 AAAAAACAAA chr1 33888111 33888146 trf 7 4.9 7 93 6 61 85 14 0 0 0.59 AAAAAAC chr1 33896482 33896508 trf 5 5.2 5 100 0 52 80 19 0 0 0.71 ACAAA chr1 33898813 33898861 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 AC chr1 33899789 33899895 trf 4 26.5 4 96 0 113 0 35 0 64 0.94 CTTT chr1 33904632 33904701 trf 2 34.5 2 94 0 120 50 46 0 2 1.16 AC chr1 33908190 33908221 trf 7 4.4 7 91 0 53 0 67 29 3 1.06 CGCCCCG chr1 33911554 33911579 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 33911984 33912009 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 33912294 33912326 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 33915335 33915450 trf 3 39.0 3 75 3 90 8 1 53 35 1.42 GGT chr1 33915335 33915448 trf 9 12.8 9 81 3 113 8 1 53 35 1.42 GGTGGTGAT chr1 33922109 33922140 trf 5 6.2 5 92 0 53 80 3 0 16 0.83 AAAAT chr1 33923733 33923793 trf 2 30.0 2 96 0 111 0 48 0 51 1.00 TC chr1 33924383 33924413 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 33926231 33926257 trf 4 6.5 4 100 0 52 53 46 0 0 1.00 AACC chr1 33929007 33929043 trf 3 12.0 3 100 0 72 33 0 0 66 0.92 ATT chr1 33931286 33931316 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 33933410 33933446 trf 1 36.0 1 88 0 54 94 0 5 0 0.31 A chr1 33938553 33938595 trf 2 21.5 2 95 4 77 50 50 0 0 1.00 CA chr1 33938609 33938636 trf 2 13.5 2 100 0 54 48 0 51 0 1.00 GA chr1 33942362 33942396 trf 5 6.4 5 90 10 50 0 0 20 79 0.73 TTTGT chr1 33942596 33942623 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 33944366 33944397 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 33947558 33947609 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 33955382 33955424 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 33958753 33958806 trf 9 6.2 8 77 12 52 47 3 24 24 1.68 TGAATGAA chr1 33958753 33958806 trf 4 12.5 4 76 11 52 47 3 24 24 1.68 TGAA chr1 33962234 33962278 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 AC chr1 33964379 33964406 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 33966293 33966329 trf 2 18.0 2 94 0 63 0 2 47 50 1.15 TG chr1 33972793 33972838 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 33977440 33977478 trf 4 9.5 4 100 0 76 26 50 0 23 1.50 CATC chr1 33979795 33979827 trf 2 16.0 2 93 0 55 3 0 46 50 1.17 TG chr1 33980980 33981024 trf 12 3.7 12 84 0 61 0 61 0 38 0.96 CTCCTCCTCTTC chr1 33981295 33981344 trf 5 9.8 5 90 0 80 0 75 4 20 0.96 TCCCC chr1 33983566 33983679 trf 12 9.0 13 70 13 67 0 50 0 49 1.00 CTTCCTCCTCCTC chr1 33983571 33983679 trf 9 11.9 9 74 13 71 0 50 0 50 1.00 TCCTCCTCT chr1 33986224 33986249 trf 1 25.0 1 100 0 50 0 100 0 0 0.00 C chr1 33987793 33987822 trf 12 2.4 12 100 0 58 34 58 6 0 1.25 CACCAGCACCAC chr1 33988833 33988866 trf 2 16.5 2 93 0 57 48 48 0 3 1.17 CA chr1 33989379 33989405 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TGTTT chr1 33997678 33997710 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 34000029 34000070 trf 4 10.5 4 86 5 57 70 24 2 2 1.11 AAAC chr1 34002123 34002155 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 34002172 34002203 trf 8 3.9 8 95 0 53 35 41 9 12 1.76 CACACATG chr1 34004610 34004635 trf 11 2.3 11 100 0 50 40 16 20 24 1.91 GAACTCAAGTT chr1 34007414 34007441 trf 5 5.4 5 100 0 54 18 0 0 81 0.69 TTTTA chr1 34008688 34008721 trf 12 2.5 13 90 9 50 3 0 15 81 0.80 TTGTTTTTTGTTT chr1 34018315 34018356 trf 4 10.0 4 89 10 57 0 0 21 78 0.76 TTTG chr1 34021023 34021060 trf 4 9.2 4 93 0 65 24 2 0 72 0.97 TATT chr1 34025450 34025498 trf 12 4.2 11 78 7 51 66 4 4 25 1.27 AATAAATAAAT chr1 34026838 34026866 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 34029213 34029246 trf 10 3.5 10 84 16 52 0 30 18 51 1.46 TCTCTGTCTG chr1 34032605 34032687 trf 6 13.8 6 82 10 82 86 13 0 0 0.57 AAAAAC chr1 34032612 34032680 trf 1 68.0 1 85 0 73 89 10 0 0 0.48 A chr1 34039680 34039707 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 34042209 34042268 trf 2 29.5 2 92 0 91 5 0 44 50 1.24 TG chr1 34044500 34044538 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 34044707 34044738 trf 6 5.2 6 100 0 62 32 16 51 0 1.44 GAGGCA chr1 34046304 34046329 trf 12 2.1 12 100 0 50 0 0 16 84 0.63 TTTTTGTTTGTT chr1 34049646 34049718 trf 4 18.0 4 100 0 144 0 50 0 50 1.00 TCCT chr1 34049719 34049779 trf 4 15.0 4 100 0 120 25 25 0 50 1.50 TCTA chr1 34050401 34050454 trf 4 13.2 4 100 0 106 0 24 0 75 0.80 TTCT chr1 34050451 34050494 trf 4 10.8 4 100 0 86 0 48 0 51 1.00 CTTC chr1 34061418 34061489 trf 2 35.5 2 100 0 142 0 0 50 49 1.00 GT chr1 34062336 34062371 trf 4 8.8 4 100 0 70 25 25 0 48 1.51 CTAT chr1 34062369 34062401 trf 8 4.0 8 95 0 55 59 0 15 25 1.36 TAAATAGA chr1 34062535 34062583 trf 7 6.9 7 100 0 96 14 14 43 27 1.84 CTGGGAT chr1 34065738 34065763 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 34066766 34066801 trf 1 35.0 1 94 0 52 94 5 0 0 0.32 A chr1 34072008 34072067 trf 10 5.8 10 86 4 73 44 0 8 47 1.33 TATGTATATA chr1 34072012 34072067 trf 2 27.0 2 81 3 65 45 0 7 47 1.30 TA chr1 34073227 34073258 trf 5 6.2 5 100 0 62 0 0 19 80 0.71 TTTTG chr1 34075803 34075872 trf 7 9.7 7 73 20 63 65 0 2 31 1.08 AATAATA chr1 34076535 34076590 trf 4 13.5 4 87 11 76 0 74 0 25 0.82 TCCC chr1 34086621 34086656 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 34087375 34087508 trf 2 72.0 2 84 15 189 51 0 48 0 1.00 AG chr1 34095878 34095906 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 34097417 34097464 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 34099000 34099025 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 34099708 34099737 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 34104481 34104532 trf 3 16.7 3 95 4 93 33 0 66 0 0.92 GAG chr1 34105965 34106007 trf 4 10.5 4 100 0 84 50 0 50 0 1.00 AGGA chr1 34108022 34108073 trf 3 17.0 3 100 0 102 0 33 33 33 1.58 GCT chr1 34108071 34108236 trf 12 13.2 12 82 7 123 0 47 0 52 1.00 CTTCTTCTCCTT chr1 34108071 34108121 trf 3 16.7 3 95 0 91 0 36 0 64 0.94 CTT chr1 34108074 34108235 trf 6 25.8 6 83 7 106 0 48 0 51 1.00 CTTCTC chr1 34108113 34108208 trf 3 31.7 3 82 0 100 0 57 0 42 0.98 CTC chr1 34108183 34108236 trf 3 17.3 3 84 3 52 0 43 0 56 0.99 TCT chr1 34109659 34109695 trf 4 8.8 4 87 6 54 50 22 27 0 1.50 AGAC chr1 34111558 34111629 trf 6 11.8 6 86 0 88 46 5 47 0 1.26 GAGAGA chr1 34112332 34112360 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 34122796 34122826 trf 4 7.5 4 100 0 60 76 0 23 0 0.78 AAAG chr1 34131901 34131951 trf 4 12.5 4 91 0 82 26 0 48 26 1.52 TGAG chr1 34133792 34133840 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 34133839 34133867 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 34135428 34135479 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 34135593 34135626 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 34141694 34141743 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 34144583 34144616 trf 3 10.7 3 93 6 57 0 30 36 33 1.58 TGC chr1 34147321 34147355 trf 5 6.8 5 87 12 52 82 17 0 0 0.67 AAAAC chr1 34147525 34147553 trf 4 7.0 4 100 0 56 75 0 0 25 0.81 AAAT chr1 34151289 34151326 trf 2 18.5 2 100 0 74 48 0 51 0 1.00 GA chr1 34156477 34156520 trf 2 21.5 2 90 9 70 48 48 0 2 1.14 CA chr1 34163530 34163592 trf 12 5.2 12 76 0 61 0 48 0 51 1.00 TCTTCCTTCTCC chr1 34168146 34168196 trf 2 25.0 2 95 0 91 2 0 48 50 1.12 TG chr1 34173343 34173370 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 34175011 34175040 trf 4 7.2 4 100 0 58 27 0 0 72 0.85 ATTT chr1 34184652 34184700 trf 2 24.0 2 95 0 87 2 0 47 50 1.12 TG chr1 34191841 34191867 trf 12 2.2 12 100 0 52 50 34 7 7 1.60 ACAACAACCATG chr1 34195134 34195188 trf 4 12.8 4 88 11 81 24 1 0 74 0.92 TTTA chr1 34199188 34199238 trf 4 12.8 4 87 4 57 44 4 30 22 1.71 TAGA chr1 34209772 34209805 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 34217755 34217805 trf 5 10.2 5 83 16 61 2 2 16 80 0.91 TTTGT chr1 34222329 34222355 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 34226959 34227033 trf 2 38.0 2 81 5 80 1 56 0 41 1.07 TC chr1 34227097 34227130 trf 4 8.2 4 100 0 66 24 0 0 75 0.80 TATT chr1 34231400 34231470 trf 2 35.0 2 88 0 95 45 0 4 50 1.21 TA chr1 34233524 34233563 trf 2 19.5 2 94 0 69 51 46 0 2 1.14 AC chr1 34243793 34243833 trf 11 3.6 11 86 6 55 27 20 45 7 1.78 GGCAGGAGCAT chr1 34244089 34244303 trf 4 53.0 4 86 1 230 0 34 0 65 0.97 TTTC chr1 34245661 34245687 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 34247142 34247175 trf 4 8.2 4 100 0 66 72 0 0 27 0.85 TAAA chr1 34247315 34247357 trf 4 10.5 4 100 0 84 26 0 0 73 0.83 ATTT chr1 34247545 34247570 trf 4 6.2 4 100 0 50 24 0 28 48 1.52 GTAT chr1 34260887 34260946 trf 2 29.5 2 92 0 100 0 45 0 54 0.99 TC chr1 34260945 34260984 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 34262340 34262365 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 34268546 34268578 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 34271715 34271756 trf 2 20.5 2 94 0 73 0 48 0 51 1.00 CT chr1 34274429 34274473 trf 8 5.6 8 81 5 54 4 0 15 79 0.89 TTTTTGGT chr1 34274780 34274839 trf 10 6.3 10 79 15 54 38 50 10 0 1.36 CACGCACGCA chr1 34274788 34274853 trf 2 33.0 2 81 3 78 44 49 6 0 1.27 CA chr1 34275603 34275639 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 34278638 34278666 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 34280016 34280052 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 34280051 34280082 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 34285405 34285438 trf 4 8.2 4 100 0 66 27 0 0 72 0.85 ATTT chr1 34286779 34286807 trf 12 2.3 12 100 0 56 0 10 39 50 1.37 CTGTGTGTGTGT chr1 34295353 34295399 trf 12 3.7 13 77 8 51 39 60 0 0 0.97 CACACACACACCA chr1 34295369 34295395 trf 7 3.7 7 100 0 52 30 69 0 0 0.89 CACACCC chr1 34296653 34296681 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 34306775 34306811 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 34307358 34307391 trf 12 2.8 12 90 0 57 36 27 36 0 1.57 AGCAGAGCCGGA chr1 34308344 34308375 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 34318435 34318522 trf 2 43.5 2 95 0 147 0 48 2 49 1.13 TC chr1 34322349 34322384 trf 12 2.9 12 91 0 52 17 0 8 74 1.06 ATTTGTTTATTT chr1 34323235 34323296 trf 2 30.5 2 91 0 95 49 45 1 3 1.28 AC chr1 34324083 34324204 trf 2 60.5 2 71 3 64 52 35 6 5 1.52 AC chr1 34324653 34324692 trf 4 9.8 4 100 0 78 23 0 0 76 0.78 TTTA chr1 34328072 34328100 trf 4 7.0 4 100 0 56 0 0 50 50 1.00 TTGG chr1 34328445 34328500 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 34332526 34332564 trf 4 9.5 4 100 0 76 73 0 0 26 0.83 TAAA chr1 34333622 34333678 trf 5 10.8 5 84 3 67 0 25 0 75 0.81 TTTCT chr1 34339638 34339663 trf 10 2.5 10 100 0 50 12 8 32 48 1.69 GTGTATGTCT chr1 34341470 34341495 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 34348310 34348336 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 34355106 34355134 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 34356281 34356368 trf 6 14.5 6 71 13 54 0 72 0 27 0.85 CCCTCC chr1 34356977 34357003 trf 4 6.5 4 100 0 52 26 0 0 73 0.84 TATT chr1 34357303 34357407 trf 12 8.7 12 81 4 93 0 63 0 35 1.01 TCCTTCCCTCCC chr1 34357313 34357407 trf 8 12.2 8 75 13 90 0 64 0 35 0.94 CCTCCTTC chr1 34358699 34358741 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 34359376 34359444 trf 5 13.6 5 93 3 111 0 19 0 80 0.70 TTTCT chr1 34361798 34361848 trf 2 25.0 2 83 0 64 42 0 8 50 1.32 AT chr1 34361851 34361892 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 34364299 34364350 trf 12 4.3 12 90 7 54 1 0 17 80 0.81 TTTTTTGTTTGA chr1 34364314 34364349 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 34369368 34369418 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 34370097 34370161 trf 8 8.0 8 89 0 74 51 17 29 1 1.54 GAGACAGA chr1 34370106 34370163 trf 4 14.2 4 84 0 69 52 17 28 1 1.54 AGAC chr1 34372158 34372298 trf 6 23.3 6 100 0 280 0 16 16 67 1.24 TTGTTC chr1 34372408 34372438 trf 5 6.2 5 96 3 53 0 0 20 80 0.72 TTTGT chr1 34373020 34373068 trf 2 24.0 2 100 0 96 50 0 0 50 1.00 TA chr1 34377158 34377313 trf 2 77.5 2 100 0 310 0 49 0 50 1.00 TC chr1 34380877 34381011 trf 4 33.0 4 90 3 196 0 29 0 69 0.94 TTTC chr1 34383424 34383503 trf 12 6.6 12 69 11 54 1 56 0 41 1.07 CCTTCCTCCCTC chr1 34385517 34385601 trf 11 8.2 10 75 13 66 36 2 2 58 1.24 TATATTATAT chr1 34387064 34387095 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 34390443 34390561 trf 12 9.3 12 83 10 128 61 0 37 0 1.02 AAGAGAGAGAGA chr1 34390443 34390565 trf 8 15.5 8 84 8 144 62 0 36 0 1.01 AAGAGAGA chr1 34390567 34390595 trf 4 7.0 4 100 0 56 25 0 75 0 0.81 GAGG chr1 34390592 34390622 trf 4 7.5 4 100 0 60 50 0 50 0 1.00 AGGA chr1 34392011 34392064 trf 4 13.8 4 79 18 51 79 18 0 1 0.83 AAAC chr1 34395757 34395885 trf 4 31.0 4 90 4 148 0 32 0 67 0.90 CTTT chr1 34395768 34395813 trf 2 22.5 2 90 0 72 0 44 0 55 0.99 TC chr1 34396651 34396695 trf 2 22.0 2 90 0 70 4 0 45 50 1.22 TG chr1 34396841 34396905 trf 6 10.3 6 85 8 67 0 0 20 79 0.73 TTGTTT chr1 34396844 34396921 trf 12 6.5 12 76 11 61 0 1 19 79 0.81 TTTTTGGTTTTT chr1 34396863 34396920 trf 7 8.4 7 88 1 73 0 1 12 85 0.66 TTTTTGT chr1 34397684 34397717 trf 4 8.2 4 100 0 66 48 24 0 27 1.51 TACA chr1 34397961 34397987 trf 12 2.2 12 100 0 52 38 0 23 38 1.55 TTGAGATTAAGA chr1 34398064 34398098 trf 12 2.8 12 90 0 50 35 44 20 0 1.52 CACACACACGGG chr1 34401831 34401870 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 34403800 34404131 trf 6 63.2 6 74 25 326 0 52 14 33 1.42 CTGCCT chr1 34403893 34404053 trf 9 18.1 9 96 3 299 0 55 11 33 1.35 CCTCTGCCT chr1 34407913 34407974 trf 5 12.2 5 100 0 122 0 0 19 80 0.72 TGTTT chr1 34410645 34410688 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 34410687 34410746 trf 2 29.5 2 96 0 109 52 0 47 0 1.00 AG chr1 34411699 34411729 trf 6 5.0 6 100 0 60 0 0 16 83 0.65 TGTTTT chr1 34425773 34425818 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 34428916 34428968 trf 3 18.3 3 88 11 83 0 0 28 71 0.87 TGT chr1 34433717 34433769 trf 4 13.0 4 100 0 104 75 0 25 0 0.81 AAAG chr1 34438937 34438962 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 34442576 34442601 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 34447922 34447954 trf 12 2.7 12 95 0 55 90 0 0 9 0.45 AAAAAAAATAAA chr1 34447922 34447953 trf 11 2.8 11 95 0 53 90 0 0 9 0.46 AAAAAAAAATA chr1 34450268 34450294 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 34453844 34453890 trf 4 11.2 4 90 4 56 58 41 0 0 0.98 AACC chr1 34455043 34455072 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 34458924 34458954 trf 2 15.0 2 100 0 60 0 50 0 50 1.00 TC chr1 34464256 34464335 trf 10 7.2 12 79 12 64 83 15 1 0 0.71 AAAAACCAAAAA chr1 34464263 34464308 trf 1 45.0 1 93 0 63 93 4 2 0 0.41 A chr1 34464304 34464332 trf 6 4.7 6 100 0 56 71 28 0 0 0.86 AAAACC chr1 34465335 34465382 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 34467213 34467244 trf 12 2.6 12 94 0 53 64 3 25 6 1.33 AGAAAGAAAGAT chr1 34470434 34470479 trf 4 11.2 4 100 0 90 0 75 0 24 0.80 CCCT chr1 34471179 34471204 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 34472303 34472370 trf 2 33.5 2 96 0 125 0 50 0 49 1.00 TC chr1 34474207 34474234 trf 12 2.2 12 100 0 54 22 77 0 0 0.76 CCCCAACCCCAC chr1 34476989 34477215 trf 3 75.7 3 94 2 195 0 44 0 55 0.99 TTC chr1 34477858 34477885 trf 9 3.0 9 100 0 54 22 11 22 44 1.84 AGATTTGTC chr1 34478149 34478188 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 34479019 34479078 trf 2 29.5 2 96 0 109 1 0 50 47 1.11 GT chr1 34484361 34484389 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AAAC chr1 34486529 34486574 trf 4 11.2 4 95 0 81 22 26 2 48 1.62 CTAT chr1 34487296 34487380 trf 6 14.2 6 85 10 95 85 11 2 0 0.68 AAAAAC chr1 34487296 34487378 trf 7 12.6 7 92 5 95 86 10 2 0 0.66 AAAAACA chr1 34487296 34487378 trf 1 82.0 1 72 0 65 86 10 2 0 0.66 A chr1 34487304 34487362 trf 11 4.9 12 82 17 77 86 13 0 0 0.58 AAAACAAAAAAC chr1 34487674 34487820 trf 4 36.5 4 88 0 175 66 0 33 0 0.92 AAAG chr1 34488420 34488505 trf 8 10.4 8 75 5 71 48 32 15 3 1.62 ACACACAG chr1 34488482 34488517 trf 4 8.8 4 87 0 52 45 25 28 0 1.54 ACAG chr1 34490009 34490050 trf 2 20.5 2 100 0 82 0 48 0 51 1.00 TC chr1 34495562 34495613 trf 10 5.0 10 83 4 66 47 0 1 50 1.12 ATTTAATATA chr1 34497408 34497853 trf 6 74.2 6 92 0 442 56 0 43 0 0.99 AAGAAG chr1 34504016 34504050 trf 1 34.0 1 87 0 50 94 0 5 0 0.32 A chr1 34506507 34506609 trf 12 8.2 12 72 10 53 50 33 7 8 1.63 CATACACACACA chr1 34506528 34506609 trf 12 6.6 12 73 5 63 50 34 7 7 1.58 ACACACAGACAC chr1 34509840 34509869 trf 3 9.7 3 100 0 58 68 0 0 31 0.89 AAT chr1 34509870 34509918 trf 3 16.0 3 100 0 96 33 0 0 66 0.92 TAT chr1 34510989 34511059 trf 4 18.5 4 74 11 67 32 0 67 0 0.91 GGAG chr1 34510998 34511059 trf 8 7.6 8 82 14 81 32 0 67 0 0.91 GAGGGAGA chr1 34511004 34511133 trf 6 20.3 6 82 12 80 33 6 58 0 1.30 GAGAGG chr1 34511061 34511120 trf 12 4.9 12 100 0 118 33 15 50 0 1.44 AGGGACAGGGAC chr1 34511713 34511763 trf 4 12.8 4 91 4 84 80 0 0 20 0.72 AAAT chr1 34515168 34515257 trf 3 29.7 3 90 0 133 39 0 60 0 0.97 AGG chr1 34515237 34515334 trf 3 32.3 3 93 0 167 63 0 36 0 0.94 AGA chr1 34516252 34516284 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 34519977 34520031 trf 5 10.8 5 91 0 54 31 0 68 0 0.90 GAGGG chr1 34520084 34520651 trf 6 98.3 6 82 9 718 33 13 52 0 1.44 GCAGGA chr1 34520086 34520650 trf 9 60.2 9 72 12 363 33 13 52 0 1.44 AGGAGCAGG chr1 34527346 34527425 trf 5 15.6 5 81 15 83 81 0 18 0 0.70 AAAAG chr1 34531185 34531233 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 34531386 34531432 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 34531647 34531837 trf 5 43.0 4 81 9 76 0 36 0 63 0.95 TTTC chr1 34531650 34531801 trf 9 16.9 8 75 14 79 0 40 0 59 0.97 CTTTCTTC chr1 34531698 34531835 trf 5 29.4 5 87 12 118 0 35 0 64 0.93 TTCTC chr1 34531860 34531887 trf 3 9.0 3 100 0 54 0 33 0 66 0.92 CTT chr1 34532095 34532124 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 34532620 34532748 trf 7 17.4 7 65 17 55 0 52 0 46 1.06 TCTCTTC chr1 34532629 34532762 trf 5 26.8 5 96 1 178 0 53 0 46 1.00 CTCTC chr1 34534517 34534567 trf 8 6.5 8 81 9 59 50 10 0 40 1.36 TATACATA chr1 34534524 34534571 trf 6 7.8 6 92 0 67 51 8 0 40 1.33 ATATAC chr1 34543681 34543755 trf 6 12.3 6 98 0 112 44 0 55 0 0.99 AGAGAG chr1 34543847 34543892 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 34546485 34546546 trf 3 20.3 3 93 0 104 29 0 70 0 0.88 GGA chr1 34546746 34546783 trf 2 18.5 2 94 0 65 48 48 2 0 1.15 AC chr1 34546782 34546823 trf 2 20.5 2 94 0 73 48 0 51 0 1.00 AG chr1 34550374 34550528 trf 3 51.7 3 72 5 71 0 57 1 40 1.12 TCC chr1 34550378 34550431 trf 9 5.8 9 89 10 81 0 75 1 22 0.90 CCTCCTCCC chr1 34550425 34550640 trf 9 24.3 9 81 7 109 0 44 0 54 1.10 CTCCTCTTC chr1 34550495 34550612 trf 3 38.3 3 91 3 162 0 37 0 61 1.02 TTC chr1 34550610 34550640 trf 3 10.0 3 92 0 51 0 63 0 36 0.95 CTC chr1 34551267 34551296 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 34553296 34553325 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 34554175 34554306 trf 4 34.0 4 83 7 173 48 2 25 23 1.63 AGAT chr1 34555881 34555922 trf 4 11.0 4 85 15 61 78 21 0 0 0.76 CAAA chr1 34558936 34558981 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 34561408 34561434 trf 4 6.5 4 100 0 52 0 26 23 50 1.50 TCTG chr1 34562271 34562304 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 34562303 34562364 trf 2 30.5 2 96 0 113 49 1 0 49 1.10 TA chr1 34562649 34562693 trf 2 22.0 2 95 0 79 47 50 2 0 1.13 CA chr1 34562981 34563017 trf 4 9.5 4 88 11 58 77 22 0 0 0.76 AACA chr1 34563517 34563546 trf 5 6.0 5 92 8 51 0 0 41 58 0.98 GTTTG chr1 34569567 34569615 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 AG chr1 34572491 34572533 trf 4 10.2 4 85 10 50 76 23 0 0 0.79 ACAA chr1 34572493 34572534 trf 5 8.6 5 92 7 52 78 21 0 0 0.76 AAACA chr1 34573728 34573764 trf 8 4.6 8 93 6 65 88 0 11 0 0.50 AAAAAAAG chr1 34575726 34575754 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AACA chr1 34577897 34578007 trf 5 21.6 5 93 3 112 69 0 30 0 0.89 AGAAA chr1 34578007 34578049 trf 6 7.0 6 86 7 50 23 0 76 0 0.79 GGGAGG chr1 34578082 34578131 trf 8 6.2 8 95 4 91 63 0 36 0 0.95 AAAGGGAA chr1 34578126 34578183 trf 5 11.4 5 100 0 114 78 0 21 0 0.74 GAAAA chr1 34578335 34578411 trf 2 38.0 2 86 5 109 2 1 47 48 1.24 TG chr1 34581777 34581817 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 TC chr1 34581814 34581866 trf 4 13.2 4 88 11 81 0 73 0 26 0.84 CTCC chr1 34585821 34585908 trf 3 29.0 3 100 0 174 0 66 0 33 0.92 CTC chr1 34585906 34585945 trf 3 13.0 3 100 0 78 0 33 0 66 0.92 TCT chr1 34588212 34588251 trf 12 3.2 12 85 0 60 10 64 7 17 1.48 CCCCTACCCCTG chr1 34591209 34591268 trf 2 29.5 2 80 0 55 50 38 6 3 1.45 AC chr1 34594469 34594539 trf 9 7.3 9 75 15 61 47 1 51 0 1.09 AGAAGAGGA chr1 34594470 34594553 trf 9 9.4 9 74 17 59 45 1 53 0 1.08 GAAGAGGAG chr1 34594475 34594551 trf 6 12.7 6 81 5 55 46 0 53 0 1.00 AGGAGG chr1 34597641 34597678 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 34613860 34613893 trf 3 11.0 3 93 0 57 63 33 3 0 1.10 ACA chr1 34616823 34616848 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 34616980 34617005 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 34619590 34619623 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 34624000 34624048 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 34624504 34624530 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 34627515 34627548 trf 12 2.8 12 90 0 57 0 39 9 51 1.34 TCTCTCTCTGTC chr1 34628840 34628866 trf 9 2.9 9 100 0 52 11 34 30 23 1.90 GCCATGCTG chr1 34629615 34629653 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 34629653 34629683 trf 4 7.5 4 100 0 60 26 0 46 26 1.53 ATGG chr1 34638361 34638395 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 34639253 34639288 trf 5 6.6 5 96 3 52 0 0 17 82 0.66 TTTGT chr1 34643251 34643392 trf 5 27.8 5 84 8 151 65 0 34 0 0.98 AAAGG chr1 34643448 34643483 trf 12 2.9 12 91 0 52 20 0 28 51 1.47 TATATGTATGTG chr1 34643518 34643730 trf 12 17.5 12 69 11 101 20 3 28 47 1.67 TGTGTATGTATG chr1 34643558 34643717 trf 6 27.8 6 68 8 55 21 2 27 48 1.63 TATGTA chr1 34643592 34643719 trf 6 21.8 6 68 9 75 18 3 29 48 1.64 TGTGTA chr1 34651494 34651547 trf 2 26.5 2 100 0 106 50 0 49 0 1.00 AG chr1 34654540 34654574 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 34655867 34655912 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 34655965 34656181 trf 5 43.2 5 99 0 306 53 0 46 0 1.00 AAGGA chr1 34657872 34657926 trf 2 27.0 2 92 7 92 50 48 0 1 1.11 AC chr1 34663398 34663443 trf 8 5.6 8 81 0 54 60 8 31 0 1.28 AGAGACAA chr1 34665304 34665335 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 34672636 34672716 trf 2 40.0 2 100 0 160 50 0 50 0 1.00 AG chr1 34672854 34673009 trf 12 13.3 12 69 13 67 49 30 1 17 1.57 CACACACATATA chr1 34672869 34672927 trf 10 5.5 10 76 8 53 53 36 0 10 1.35 ACACACACAA chr1 34673145 34673275 trf 12 10.8 12 71 15 81 50 32 2 14 1.55 CACATACATACA chr1 34673887 34673990 trf 6 17.2 6 78 0 80 0 36 10 51 1.43 CTCTCT chr1 34673888 34673987 trf 10 9.9 10 78 0 90 1 35 11 52 1.44 TCTCTCTCTG chr1 34673890 34673990 trf 8 12.5 8 82 8 114 1 36 11 52 1.44 TCTCTCTG chr1 34677086 34677112 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 34679058 34679088 trf 6 5.2 6 92 8 53 0 0 83 16 0.65 GGGGGT chr1 34679059 34679085 trf 11 2.4 11 100 0 52 0 0 84 15 0.62 GGGGTGGGGGT chr1 34687347 34687432 trf 12 7.1 12 93 0 71 0 67 0 32 0.91 CCTTCCTCCCTT chr1 34687353 34687418 trf 4 16.2 4 96 0 121 0 72 0 27 0.85 TCCC chr1 34690331 34690380 trf 2 24.5 2 80 0 53 2 6 46 44 1.39 GT chr1 34690342 34690381 trf 12 3.2 12 88 0 60 0 10 48 41 1.37 TGCGTGTGTGTG chr1 34695216 34695270 trf 2 27.5 2 90 3 83 46 50 0 3 1.19 CA chr1 34695936 34695962 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TGTTT chr1 34700042 34700074 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 34707581 34707637 trf 2 28.0 2 100 0 112 50 0 50 0 1.00 GA chr1 34707634 34707667 trf 4 8.2 4 100 0 66 51 24 24 0 1.48 AGAC chr1 34709695 34709721 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 34712247 34712298 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 34715939 34715972 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 34717729 34717954 trf 2 114.5 2 67 8 86 12 2 37 47 1.54 TG chr1 34718441 34718479 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 34721160 34721185 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 34725696 34725724 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 34726409 34726478 trf 3 23.7 3 84 14 76 72 26 0 1 0.93 AAC chr1 34729579 34729618 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 34730113 34730272 trf 7 22.1 7 94 5 250 0 44 0 55 0.99 TTCTCTC chr1 34730114 34730273 trf 2 88.0 2 80 19 199 0 44 0 55 0.99 TC chr1 34730271 34730310 trf 8 4.9 8 83 0 51 0 61 0 38 0.96 TCCCTCCT chr1 34733893 34734072 trf 2 90.0 2 79 1 171 3 7 45 43 1.49 TG chr1 34738990 34739110 trf 2 60.0 2 77 3 98 50 39 5 5 1.48 AC chr1 34739495 34739528 trf 11 3.0 11 95 0 57 27 12 18 42 1.85 TGATGTCATTA chr1 34740795 34740833 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 34742050 34742098 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 34742250 34742285 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 34743750 34743785 trf 2 18.0 2 88 5 54 2 0 48 48 1.16 GT chr1 34744002 34744042 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 34747818 34747888 trf 2 35.0 2 91 0 113 1 2 48 47 1.25 TG chr1 34752038 34752103 trf 2 32.5 2 100 0 130 0 49 0 50 1.00 TC chr1 34754190 34754237 trf 2 23.5 2 95 0 85 0 46 2 51 1.13 TC chr1 34754246 34754271 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TGTC chr1 34755487 34755530 trf 5 8.2 5 92 7 68 39 4 18 37 1.72 ATTAG chr1 34755937 34755980 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 34756620 34756741 trf 5 24.6 5 71 15 83 0 1 23 74 0.96 TTTTG chr1 34762285 34762328 trf 2 21.5 2 90 0 68 2 2 48 46 1.27 GT chr1 34763949 34763982 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 34764108 34764146 trf 7 5.3 7 84 15 51 0 13 0 86 0.56 TTCTTTT chr1 34764111 34764146 trf 8 4.4 8 89 10 54 0 11 0 88 0.51 TTTTCTTT chr1 34768698 34768740 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 34773810 34774132 trf 2 159.5 2 69 13 151 11 1 40 45 1.52 TG chr1 34775250 34775321 trf 12 5.9 12 86 0 79 49 8 1 40 1.42 ATACATATATAT chr1 34775266 34775309 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 34777800 34777897 trf 8 11.9 8 71 20 60 8 46 0 45 1.33 ACTCTCTT chr1 34777818 34777885 trf 2 35.0 2 72 19 54 5 50 0 43 1.26 CT chr1 34782874 34782900 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 34783814 34783877 trf 2 31.0 2 93 3 99 49 46 0 4 1.23 CA chr1 34788316 34788352 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 34788658 34788685 trf 4 6.8 4 100 0 54 22 25 0 51 1.48 TTCA chr1 34794259 34794310 trf 4 12.8 4 100 0 102 0 74 0 25 0.82 TCCC chr1 34803918 34803974 trf 2 28.0 2 96 0 103 1 0 48 50 1.11 GT chr1 34815535 34815586 trf 2 25.5 2 79 0 57 41 49 7 1 1.43 CA chr1 34823938 34823970 trf 4 8.0 4 92 0 55 53 25 21 0 1.46 GCAA chr1 34830963 34831016 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 34848176 34848208 trf 4 8.0 4 100 0 64 25 0 25 50 1.50 GTAT chr1 34849012 34849051 trf 2 19.5 2 94 0 69 0 0 48 51 1.00 GT chr1 34850958 34850984 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 34852950 34852985 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 34855816 34855849 trf 5 6.8 5 93 6 59 0 0 18 81 0.68 TTTTG chr1 34859741 34859776 trf 7 5.0 7 85 0 52 0 57 0 42 0.99 CCTTTCC chr1 34860840 34860886 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 34860885 34860910 trf 2 12.5 2 100 0 50 48 0 52 0 1.00 GA chr1 34861214 34861243 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 34861736 34861798 trf 7 8.6 7 82 10 72 32 0 66 1 1.02 GGAGAGG chr1 34866650 34866799 trf 2 75.0 2 85 1 102 36 0 14 49 1.43 AT chr1 34869010 34869060 trf 4 12.5 4 82 0 64 30 4 20 46 1.69 ATGT chr1 34873956 34873983 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 34874595 34874637 trf 10 4.3 10 93 3 68 76 19 4 0 0.96 AAACGAAACA chr1 34874595 34874637 trf 5 8.6 5 86 2 59 76 19 4 0 0.96 AAACA chr1 34883550 34883719 trf 8 21.1 8 84 4 80 0 44 0 55 0.99 TCTCTCTT chr1 34883603 34883653 trf 4 12.5 4 95 0 91 0 48 0 52 1.00 CTTC chr1 34883651 34883709 trf 2 29.0 2 96 0 107 0 48 0 51 1.00 CT chr1 34886889 34886983 trf 4 23.5 4 100 0 188 75 0 24 0 0.80 AAGA chr1 34897407 34897499 trf 10 9.4 10 78 4 80 50 10 38 1 1.45 AGAGACAGAG chr1 34897407 34897470 trf 2 31.5 2 80 0 72 49 7 42 0 1.32 AG chr1 34897622 34897678 trf 2 28.0 2 83 0 58 5 3 39 51 1.42 TG chr1 34898181 34898215 trf 6 5.7 6 100 0 68 50 14 35 0 1.44 GAGACA chr1 34899177 34899232 trf 4 13.8 4 100 0 110 23 25 0 50 1.49 TCTA chr1 34900555 34900618 trf 12 5.4 12 70 14 51 17 4 31 46 1.69 TGTGTATATGTG chr1 34900732 34900765 trf 5 6.8 5 96 3 59 0 15 0 84 0.61 TTTTC chr1 34901067 34901102 trf 3 11.7 3 100 0 70 68 31 0 0 0.90 AAC chr1 34905789 34905814 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 34909944 34910000 trf 12 4.9 11 78 22 62 0 44 1 53 1.11 TTCTTCCTCTC chr1 34910026 34910064 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 TG chr1 34912530 34912798 trf 9 29.9 9 86 1 270 0 32 10 57 1.32 TTCTTCTTC chr1 34912530 34912798 trf 6 44.8 6 86 1 270 0 32 10 57 1.32 TTCTTC chr1 34920915 34920955 trf 2 20.0 2 94 0 71 47 0 2 50 1.14 AT chr1 34925984 34926161 trf 4 43.2 4 87 10 252 0 26 1 72 0.92 TTTC chr1 34927784 34927816 trf 2 16.0 2 93 0 55 0 46 0 53 1.00 CT chr1 34932581 34932634 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 34934649 34934758 trf 4 27.2 4 96 0 56 0 66 0 33 0.92 TCTC chr1 34934755 34934790 trf 4 8.8 4 100 0 70 0 25 0 74 0.82 TCTT chr1 34935937 34935976 trf 3 13.0 3 100 0 78 0 0 66 33 0.92 GGT chr1 34938340 34938479 trf 4 35.5 4 94 4 248 25 23 0 50 1.54 CTAT chr1 34939997 34940077 trf 4 20.0 4 97 0 115 0 50 6 43 1.27 CCTT chr1 34940074 34940184 trf 8 13.8 8 87 3 98 0 40 3 55 1.24 CTTTCTCT chr1 34940125 34940192 trf 2 33.5 2 87 0 98 0 43 0 56 0.99 TC chr1 34940196 34940229 trf 4 8.5 4 93 6 59 0 75 0 24 0.80 TCCC chr1 34942117 34942166 trf 2 24.5 2 95 0 89 53 0 46 0 1.00 AG chr1 34942555 34942597 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 34943538 34943633 trf 4 23.5 4 96 1 109 41 0 57 1 1.05 GAGA chr1 34944395 34944502 trf 4 27.0 4 89 1 117 2 26 4 66 1.25 CTTT chr1 34951431 34951464 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 34951506 34951557 trf 2 25.5 2 95 0 93 50 47 0 1 1.12 AC chr1 34951798 34951837 trf 4 9.8 4 94 0 69 2 25 23 48 1.63 TCTG chr1 34953864 34953895 trf 2 15.5 2 93 0 53 3 0 51 45 1.17 GT chr1 34955179 34955222 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 34961148 34961189 trf 4 10.2 4 100 0 82 24 0 75 0 0.80 GGGA chr1 34961186 34961214 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 34961214 34961266 trf 3 18.0 3 78 7 54 40 0 59 0 0.97 AGG chr1 34961885 34961928 trf 6 7.0 6 91 2 68 0 0 79 20 0.74 TGGGGG chr1 34963428 34963468 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 34964067 34964103 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 34969079 34969119 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 34970462 34970503 trf 9 4.6 9 96 0 73 48 0 51 0 1.00 GAAGAGGGA chr1 34970488 34970518 trf 9 3.3 9 95 0 51 56 0 36 6 1.26 AGAAGATGA chr1 34980798 34980833 trf 2 17.5 2 87 0 52 2 2 45 48 1.32 TG chr1 34982917 34982947 trf 2 15.5 2 93 6 53 0 0 50 50 1.00 TG chr1 34983011 34983038 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 34983505 34983651 trf 4 35.8 4 90 4 148 0 34 0 65 0.93 TTTC chr1 34989198 34989229 trf 4 7.8 4 100 0 62 25 0 22 51 1.48 TATG chr1 34989226 34989332 trf 4 26.8 4 70 16 51 32 16 6 44 1.74 TATC chr1 34991897 34991924 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 34994306 34994368 trf 4 16.0 4 90 6 101 0 74 0 25 0.82 CTCC chr1 34997642 34997713 trf 4 18.0 4 85 2 81 5 28 21 45 1.74 GTCT chr1 34997656 34997720 trf 12 5.3 12 81 5 76 7 25 20 46 1.77 CTGTCTGTCTAT chr1 34999596 34999667 trf 4 17.2 4 88 11 108 0 25 0 74 0.82 TTTC chr1 34999665 34999722 trf 3 19.0 3 100 0 114 0 66 0 33 0.92 CTC chr1 34999720 34999840 trf 8 15.4 8 81 13 64 0 29 0 70 0.87 TCTTTTCT chr1 34999720 34999776 trf 3 19.3 3 89 7 89 0 32 0 67 0.91 TCT chr1 34999750 34999838 trf 4 22.5 4 82 13 112 0 27 0 72 0.85 TTTC chr1 35000597 35000642 trf 4 11.2 4 95 0 81 0 73 2 24 0.95 CCCT chr1 35002007 35002038 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 35006538 35006778 trf 4 62.5 4 75 12 209 24 23 3 48 1.67 TATC chr1 35013452 35013559 trf 4 28.0 4 71 12 82 28 23 1 46 1.62 ATCT chr1 35013452 35013515 trf 11 5.5 11 79 5 63 23 22 3 50 1.63 ATCTATTATCT chr1 35013460 35013572 trf 11 9.6 11 74 13 82 28 24 2 44 1.67 ATCTATCTATC chr1 35029993 35030040 trf 5 9.8 5 90 4 62 0 0 23 76 0.78 TTTTG chr1 35036835 35036877 trf 6 7.0 6 100 0 84 0 66 0 33 0.92 CCTTCC chr1 35036871 35036917 trf 4 11.5 4 100 0 92 0 52 0 47 1.00 CCTT chr1 35038060 35038110 trf 2 25.0 2 91 0 82 4 0 46 50 1.20 TG chr1 35040658 35040683 trf 4 6.2 4 100 0 50 52 24 24 0 1.48 AGAC chr1 35040680 35040727 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35042734 35042760 trf 12 2.2 12 100 0 52 0 7 0 92 0.39 TTTCTTTTTTTT chr1 35051035 35051078 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 35053387 35053437 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 35056218 35056270 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 35060796 35060865 trf 10 6.9 10 73 12 61 50 8 37 2 1.48 ACAGAGAGAG chr1 35060798 35060865 trf 12 5.4 12 75 7 62 50 7 38 2 1.46 AGAGAGAGACAG chr1 35060824 35060863 trf 6 6.8 6 85 11 55 51 10 35 2 1.50 AGAGAC chr1 35060871 35060921 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 35060920 35060965 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 35061043 35061082 trf 6 6.5 6 100 0 78 0 0 17 82 0.68 TGTTTT chr1 35061629 35061654 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 35065359 35065403 trf 5 8.8 5 94 0 79 79 18 2 0 0.83 AAAAC chr1 35074296 35074354 trf 4 14.5 4 92 7 100 75 0 0 24 0.80 AATA chr1 35074738 35074779 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 35078310 35078364 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 35078361 35078425 trf 4 16.0 4 100 0 128 0 75 0 25 0.81 CTCC chr1 35078424 35078465 trf 4 10.2 4 100 0 82 0 26 0 73 0.84 CTTT chr1 35084565 35084604 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 35084690 35084737 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35085639 35085691 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 CT chr1 35085690 35085719 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 35086027 35086271 trf 6 41.3 6 93 3 289 0 44 0 55 0.99 CTTCTC chr1 35086270 35086333 trf 4 15.8 4 96 0 117 0 26 0 73 0.84 TCTT chr1 35088196 35088346 trf 2 76.0 2 72 7 101 42 8 3 46 1.49 AT chr1 35089517 35089590 trf 2 37.0 2 94 2 130 52 0 47 0 1.00 GA chr1 35089966 35090013 trf 4 11.8 4 95 0 85 48 25 2 23 1.62 ACAT chr1 35091093 35091152 trf 4 15.2 4 92 7 104 27 25 0 47 1.52 ATCT chr1 35094906 35094968 trf 4 15.5 4 100 0 124 50 0 24 25 1.50 ATAG chr1 35095203 35095305 trf 5 20.4 5 94 0 150 74 1 23 0 0.92 AAAGA chr1 35100668 35100696 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 35101732 35101769 trf 4 9.2 4 100 0 74 75 0 24 0 0.80 AAAG chr1 35106696 35106963 trf 2 134.0 2 73 5 119 49 36 2 11 1.52 AC chr1 35121309 35121362 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 35124229 35124276 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35124275 35124316 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 35124397 35124430 trf 4 8.2 4 100 0 66 24 0 0 75 0.80 TTAT chr1 35130362 35130439 trf 12 6.5 12 76 20 58 23 3 0 72 1.01 ATTTATATTTTT chr1 35130370 35130447 trf 4 18.2 4 81 17 86 23 3 0 72 1.01 TTTA chr1 35136232 35136277 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 35140335 35140398 trf 2 31.5 2 100 0 126 0 49 0 50 1.00 TC chr1 35140397 35140458 trf 2 30.5 2 93 0 104 3 0 45 50 1.17 TG chr1 35145763 35145794 trf 4 7.8 4 92 0 53 74 22 3 0 0.96 AAAC chr1 35147605 35147829 trf 3 75.0 3 83 6 258 0 60 0 37 1.09 CTC chr1 35148137 35148166 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 35151971 35152029 trf 5 11.2 5 96 3 98 0 0 22 77 0.77 TGTTT chr1 35152616 35152671 trf 2 27.5 2 92 0 92 1 1 49 47 1.23 GT chr1 35153132 35153182 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 35154325 35154387 trf 2 31.0 2 96 0 115 48 0 51 0 1.00 AG chr1 35154706 35154745 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 35170520 35170597 trf 2 38.5 2 100 0 154 0 50 0 49 1.00 CT chr1 35184721 35184755 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 35187586 35187655 trf 2 34.5 2 94 0 111 4 0 44 50 1.21 TG chr1 35187622 35187754 trf 8 16.9 8 72 7 74 21 6 27 44 1.76 TGTGTATA chr1 35192862 35192889 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 35202205 35202293 trf 6 14.7 6 85 4 115 47 2 46 3 1.31 GAGAGA chr1 35202205 35202293 trf 4 22.0 4 87 4 115 47 2 46 3 1.31 GAGA chr1 35204393 35204438 trf 2 22.0 2 95 4 81 0 2 48 48 1.13 TG chr1 35212838 35212922 trf 3 28.0 3 100 0 168 0 33 0 66 0.92 TTC chr1 35214166 35214192 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 35221063 35221104 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 35230540 35230586 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 35230591 35230648 trf 2 28.5 2 92 0 96 0 45 0 54 0.99 TC chr1 35233672 35233712 trf 10 4.0 10 100 0 80 30 30 20 20 1.97 GTCCATGAAC chr1 35235549 35235576 trf 7 3.9 7 100 0 54 11 0 0 88 0.50 TTTTTTA chr1 35244302 35244339 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 35245484 35245531 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35246591 35246647 trf 12 4.5 12 73 13 51 41 33 7 17 1.77 CACATACATGCA chr1 35253290 35253403 trf 2 56.5 2 90 0 181 0 51 0 48 1.00 CT chr1 35255182 35255222 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 35256423 35256516 trf 8 11.8 8 79 14 79 83 13 2 0 0.73 AAAAACAA chr1 35256423 35256515 trf 12 7.3 12 77 12 96 84 13 2 0 0.71 AAAAAAAACAAA chr1 35256423 35256515 trf 1 92.0 1 71 0 58 84 13 2 0 0.71 A chr1 35258391 35258419 trf 3 9.3 3 100 0 56 35 0 64 0 0.94 AGG chr1 35258922 35259422 trf 12 41.9 12 77 10 402 0 60 0 39 0.99 CTCCCTCTCTCT chr1 35258926 35259427 trf 4 131.0 4 73 8 330 0 59 0 39 0.99 CTCT chr1 35263793 35264005 trf 10 20.6 10 86 3 253 9 3 40 46 1.52 GTGTGTATGT chr1 35265701 35265746 trf 2 22.5 2 100 0 90 0 51 0 48 1.00 CT chr1 35265745 35265776 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 35266971 35267025 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 35268209 35268257 trf 3 16.0 3 91 0 78 0 0 37 62 0.95 GTT chr1 35270810 35270863 trf 12 4.4 12 80 0 61 32 1 15 50 1.54 TATATGTGTATA chr1 35276649 35276679 trf 5 5.8 5 96 4 51 80 20 0 0 0.72 AAAAC chr1 35277535 35277571 trf 5 7.8 5 93 6 51 80 19 0 0 0.71 AAAAC chr1 35278697 35278734 trf 10 3.7 10 88 0 56 0 35 16 48 1.46 TGTCTCTGTC chr1 35280250 35280366 trf 7 15.5 8 66 28 51 1 50 0 47 1.17 CTTCTCCT chr1 35281639 35281679 trf 2 20.0 2 89 0 62 2 2 47 47 1.29 GT chr1 35282244 35282272 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 TTTG chr1 35286512 35286577 trf 2 32.5 2 100 0 130 50 0 49 0 1.00 AG chr1 35289829 35290079 trf 4 63.8 4 69 18 143 45 2 24 27 1.67 AGAT chr1 35296794 35296827 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 35296826 35296852 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 35298743 35298794 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 35299734 35299759 trf 11 2.3 11 100 0 50 0 24 28 48 1.52 TGTGCCTTCTG chr1 35299915 35299943 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 35300600 35300657 trf 3 19.0 3 100 0 114 66 0 33 0 0.92 AAG chr1 35303370 35303402 trf 4 8.0 4 92 0 55 78 21 0 0 0.76 AAAC chr1 35306506 35306536 trf 4 7.5 4 92 0 51 30 0 70 0 0.88 AGGG chr1 35310241 35310361 trf 4 30.0 4 94 3 89 0 62 0 36 1.01 CCTT chr1 35310249 35310338 trf 12 7.4 12 92 0 124 0 68 0 31 0.90 CCTCCCTCCCTC chr1 35310249 35310338 trf 8 11.1 8 95 0 124 0 68 0 31 0.90 CCTCCCTC chr1 35319544 35319622 trf 2 39.5 2 90 2 122 46 0 52 1 1.08 AG chr1 35321622 35321672 trf 2 25.0 2 91 0 82 0 54 0 46 1.00 TC chr1 35321659 35321700 trf 4 10.8 4 84 10 59 0 70 0 29 0.87 CTCC chr1 35323975 35324034 trf 2 29.5 2 82 0 64 47 42 1 8 1.44 CA chr1 35326928 35326959 trf 2 15.5 2 93 0 53 48 0 3 48 1.17 AT chr1 35326976 35327067 trf 3 30.7 3 97 2 175 65 0 34 0 0.93 AGA chr1 35327829 35327907 trf 6 13.0 6 100 0 156 50 16 0 33 1.46 ATATAC chr1 35329347 35329421 trf 11 6.8 11 80 9 53 25 0 74 0 0.82 GGGGAAGGGGA chr1 35329347 35329422 trf 5 14.0 5 75 12 60 26 0 73 0 0.84 GGGGA chr1 35329350 35329400 trf 11 4.5 11 94 0 91 28 0 72 0 0.86 GAGGGGGAGGA chr1 35330493 35330523 trf 12 2.5 12 94 0 51 20 0 70 10 1.16 GAGGGGAAGGTG chr1 35332929 35332970 trf 6 6.8 6 94 0 64 2 34 9 53 1.47 TCTCTG chr1 35332941 35332984 trf 12 3.4 13 84 12 54 2 34 9 53 1.46 TCTCTGTCTCTTC chr1 35335130 35335177 trf 6 7.8 6 93 6 78 0 0 14 85 0.61 GTTTTT chr1 35336008 35336050 trf 12 3.6 12 96 3 77 35 7 0 57 1.26 TATTATATATTC chr1 35337469 35337501 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 35341341 35341378 trf 2 18.5 2 94 0 65 0 0 45 54 1.00 TG chr1 35351728 35351762 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 35352564 35352607 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 35354275 35354487 trf 2 110.5 2 71 9 111 47 41 0 9 1.43 CA chr1 35354276 35354487 trf 12 17.7 12 71 14 134 47 41 0 9 1.43 ACACACACACAT chr1 35355630 35355671 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 35355995 35356034 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 35357921 35357989 trf 4 17.0 4 96 0 127 0 26 0 73 0.83 TTTC chr1 35357992 35358053 trf 4 15.2 4 100 0 122 0 75 0 24 0.80 CCTC chr1 35358052 35358095 trf 4 10.8 4 100 0 86 0 25 0 74 0.82 CTTT chr1 35361233 35361274 trf 5 8.2 5 100 0 82 80 0 0 19 0.71 ATAAA chr1 35361337 35361457 trf 10 10.8 10 68 19 60 36 36 5 21 1.76 TACACACTCA chr1 35370418 35370453 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 35371516 35371576 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 35389001 35389044 trf 2 21.5 2 95 0 59 51 6 0 41 1.29 AT chr1 35394576 35395016 trf 6 75.7 6 90 3 422 43 1 54 0 1.09 GAGAGA chr1 35396100 35396194 trf 6 15.7 6 81 4 100 9 0 43 46 1.36 TGTGTG chr1 35396100 35396194 trf 4 23.5 4 80 4 100 9 0 43 46 1.36 TGTG chr1 35397337 35397365 trf 4 7.0 4 100 0 56 25 0 0 75 0.81 TTAT chr1 35400329 35400391 trf 2 31.0 2 93 0 106 50 3 0 46 1.17 AT chr1 35402829 35402875 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 35402876 35402901 trf 3 8.3 3 100 0 50 32 68 0 0 0.90 CAC chr1 35405091 35405125 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 CA chr1 35405281 35405308 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 35405382 35405451 trf 2 34.5 2 100 0 138 50 0 49 0 1.00 AG chr1 35407833 35407882 trf 6 8.2 6 100 0 98 32 0 67 0 0.91 GGGGAA chr1 35414576 35414604 trf 3 9.3 3 100 0 56 0 0 64 35 0.94 TGG chr1 35415300 35415506 trf 2 103.5 2 78 6 159 10 0 40 48 1.45 TG chr1 35415728 35415775 trf 5 9.4 5 77 9 51 74 17 4 4 1.14 AAACA chr1 35418815 35418880 trf 8 8.4 8 73 10 55 0 36 3 60 1.13 TCTCTCTT chr1 35418951 35418984 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 35420023 35420070 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 35422483 35422515 trf 1 32.0 1 100 0 64 100 0 0 0 0.00 A chr1 35424361 35424402 trf 10 4.1 10 83 0 55 51 36 0 12 1.40 ATACACACAC chr1 35425630 35425657 trf 6 4.5 6 100 0 54 14 14 0 70 1.17 TTTCTA chr1 35429375 35429420 trf 3 15.0 3 90 0 63 33 6 0 60 1.23 TTA chr1 35429971 35430050 trf 2 39.5 2 84 0 95 53 40 0 6 1.26 AC chr1 35441760 35441796 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 35450595 35450641 trf 1 46.0 1 91 0 65 93 6 0 0 0.35 A chr1 35453325 35453611 trf 9 30.7 9 72 10 164 30 18 39 12 1.87 ACTGGGAGC chr1 35456533 35456559 trf 4 6.5 4 100 0 52 53 46 0 0 1.00 AACC chr1 35456556 35456588 trf 4 8.0 4 100 0 64 75 25 0 0 0.81 CAAA chr1 35458462 35458520 trf 2 29.0 2 96 0 107 1 0 48 50 1.11 TG chr1 35458519 35458571 trf 8 6.5 8 86 0 68 50 15 34 0 1.45 GAGACAGA chr1 35458532 35458571 trf 10 4.1 10 83 12 55 51 12 35 0 1.40 AGACAGAGAG chr1 35461249 35461308 trf 4 14.8 4 100 0 118 0 50 0 49 1.00 TCCT chr1 35461352 35461400 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 35461594 35461627 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 35462398 35462485 trf 3 29.0 3 78 0 57 57 27 10 4 1.51 ACA chr1 35462402 35462533 trf 12 10.9 12 71 0 73 55 26 12 4 1.56 CAACAACAACAG chr1 35462438 35462594 trf 12 13.5 12 69 8 63 53 26 14 5 1.62 CAACAACAGCAG chr1 35462561 35462650 trf 12 7.2 12 70 7 52 58 24 7 8 1.55 CAGCAACAATAA chr1 35465417 35465471 trf 2 27.0 2 100 0 108 0 0 50 50 1.00 TG chr1 35466036 35466151 trf 3 38.7 3 76 1 70 2 52 0 44 1.21 TCC chr1 35466045 35466165 trf 12 10.1 12 71 10 68 1 49 0 48 1.17 TCCTTCTCCTCT chr1 35466148 35466196 trf 9 5.8 9 78 14 50 2 31 0 66 1.03 CTCTTCTTT chr1 35468775 35468836 trf 2 30.5 2 100 0 122 50 0 49 0 1.00 AG chr1 35476888 35476924 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 35483170 35483265 trf 10 9.9 10 76 13 74 50 13 34 1 1.49 AGAGAGAGAC chr1 35483186 35483269 trf 8 9.6 8 74 14 67 50 10 37 1 1.45 AGAGAGAC chr1 35483278 35483329 trf 9 5.7 9 83 0 57 47 1 50 0 1.12 AAGAAGGAG chr1 35483300 35483360 trf 3 20.3 3 86 3 68 38 0 60 1 1.07 AGG chr1 35484207 35484245 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 35484709 35484761 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 35492473 35492513 trf 4 10.0 4 100 0 80 0 0 50 50 1.00 GTTG chr1 35495791 35495837 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 35497293 35497349 trf 2 28.0 2 85 0 76 46 46 3 3 1.37 AC chr1 35499384 35499409 trf 11 2.3 11 100 0 50 84 0 0 16 0.63 AAATAAAATAA chr1 35499733 35499796 trf 10 6.3 10 86 0 81 1 6 42 49 1.37 GTGTGTGTCT chr1 35499734 35499796 trf 8 7.5 8 87 3 61 1 6 41 50 1.38 TGTGTGTC chr1 35499736 35499795 trf 12 4.9 12 89 0 82 1 6 40 50 1.39 TGTGTGTGTGTC chr1 35503120 35503160 trf 4 10.0 4 100 0 80 25 0 50 25 1.50 TGGA chr1 35503242 35503410 trf 4 41.8 4 85 6 189 26 2 47 22 1.65 TGGA chr1 35503358 35503417 trf 8 7.4 8 96 0 64 27 0 45 27 1.54 ATGGATGA chr1 35506207 35506293 trf 3 28.7 3 100 0 172 0 32 0 67 0.91 TTC chr1 35507373 35507409 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 35507951 35507985 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 35509694 35509829 trf 10 14.6 10 75 16 69 46 38 2 12 1.54 ACACATACAC chr1 35509694 35509826 trf 8 16.6 8 81 10 85 46 38 2 12 1.54 ACACATAC chr1 35509694 35509736 trf 2 21.0 2 90 0 66 52 45 0 2 1.13 AC chr1 35509751 35509793 trf 4 10.8 4 79 5 50 50 26 0 23 1.50 CATA chr1 35519415 35519455 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 CT chr1 35524396 35524437 trf 6 6.8 6 97 0 73 51 12 36 0 1.40 AGAGAC chr1 35525327 35525442 trf 4 26.5 4 84 10 122 0 73 0 26 0.84 CCTC chr1 35527067 35527114 trf 4 11.8 4 100 0 94 74 0 0 25 0.82 AATA chr1 35531688 35531742 trf 2 27.0 2 100 0 108 0 50 0 50 1.00 TC chr1 35531749 35531832 trf 10 7.4 11 71 18 64 1 68 0 30 0.97 CTCCCTCTCCC chr1 35535803 35535843 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 35542775 35542837 trf 2 31.5 2 93 3 108 0 0 48 51 1.00 TG chr1 35547005 35547041 trf 4 9.2 4 93 6 65 47 0 52 0 1.00 GGAA chr1 35547587 35547620 trf 4 8.2 4 93 0 57 45 0 27 27 1.54 TAGA chr1 35556825 35556855 trf 4 7.5 4 100 0 60 73 0 0 26 0.84 ATAA chr1 35556884 35556980 trf 3 32.3 3 95 2 176 66 0 33 0 0.92 GAA chr1 35556976 35557036 trf 4 15.0 4 100 0 120 50 0 50 0 1.00 GAAG chr1 35564771 35564835 trf 2 32.0 2 100 0 128 50 0 50 0 1.00 AG chr1 35566024 35566137 trf 5 22.2 5 87 3 163 24 0 74 0 0.88 GGGGA chr1 35568681 35568719 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 35574079 35574113 trf 3 11.7 3 87 6 52 0 0 29 70 0.87 TTG chr1 35574605 35574658 trf 2 26.5 2 100 0 106 0 0 50 49 1.00 GT chr1 35578907 35578984 trf 4 20.5 4 87 10 101 45 1 24 28 1.61 TAGA chr1 35579950 35580002 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 35580728 35580776 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 35585042 35585097 trf 2 27.5 2 100 0 110 0 0 49 50 1.00 TG chr1 35588420 35588467 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35594037 35594082 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 35598265 35598316 trf 7 6.9 7 82 8 57 21 0 1 76 0.88 ATTTTTT chr1 35600821 35600860 trf 2 19.5 2 89 0 60 5 0 46 48 1.24 GT chr1 35600859 35600914 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 35601595 35601679 trf 2 42.0 2 95 0 105 50 8 0 41 1.33 AT chr1 35601681 35601763 trf 2 41.0 2 90 0 128 2 0 45 52 1.14 GT chr1 35608255 35608285 trf 4 7.5 4 100 0 60 23 0 0 76 0.78 TTTA chr1 35611017 35611069 trf 2 27.0 2 92 7 90 0 51 0 48 1.00 TC chr1 35611144 35611431 trf 10 28.5 10 70 10 138 48 35 5 11 1.61 CACATACACA chr1 35611144 35611430 trf 2 141.0 2 66 5 99 48 35 5 10 1.61 CA chr1 35612992 35613024 trf 12 2.7 12 95 0 55 43 40 6 9 1.62 CACACACACATG chr1 35614144 35614215 trf 2 37.0 2 80 8 85 50 2 1 45 1.25 TA chr1 35616764 35616803 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 35616980 35617021 trf 12 3.2 13 86 10 50 26 0 2 70 0.99 TTATTATTATTAT chr1 35618504 35618558 trf 2 27.0 2 96 0 99 50 48 0 1 1.11 AC chr1 35622593 35622629 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 35622963 35623017 trf 2 27.0 2 96 0 99 50 48 0 1 1.11 AC chr1 35628477 35628522 trf 6 7.3 6 83 14 56 82 13 2 2 0.86 AAAAAC chr1 35632525 35632559 trf 2 17.0 2 93 0 59 2 50 0 47 1.16 CT chr1 35632558 35632601 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 35636296 35636324 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 35638756 35638802 trf 10 4.7 10 83 2 58 54 30 10 4 1.55 ACACACAGAG chr1 35638895 35638961 trf 2 33.5 2 93 3 116 51 0 48 0 1.00 AG chr1 35639685 35639714 trf 4 7.2 4 100 0 58 0 24 24 51 1.48 TGTC chr1 35639908 35640117 trf 5 42.2 5 93 3 199 60 0 39 0 0.97 AGAAG chr1 35639993 35640131 trf 5 27.6 5 98 0 105 65 0 34 0 0.93 AAGAA chr1 35649272 35649319 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 35649623 35649654 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 35652568 35652618 trf 4 12.8 4 91 4 84 50 22 2 26 1.60 ATAC chr1 35656232 35656310 trf 2 39.0 2 92 0 129 2 1 46 50 1.23 GT chr1 35656632 35656929 trf 6 49.8 6 91 1 454 3 18 28 50 1.63 TGTCTG chr1 35660124 35660274 trf 4 37.8 4 93 1 167 66 0 34 0 0.92 GAAA chr1 35660273 35660319 trf 4 11.5 4 100 0 92 26 0 73 0 0.83 AGGG chr1 35661852 35661905 trf 4 13.2 4 100 0 106 50 0 24 24 1.49 ATAG chr1 35662112 35662204 trf 6 15.3 6 94 0 157 51 0 48 0 1.00 AGGAAG chr1 35662381 35662411 trf 4 7.5 4 100 0 60 0 23 0 76 0.78 TTTC chr1 35662408 35662446 trf 4 9.5 4 100 0 76 0 50 0 50 1.00 CTTC chr1 35662444 35662506 trf 2 31.0 2 96 0 115 0 48 0 51 1.00 CT chr1 35665508 35665556 trf 4 12.2 4 77 4 53 2 25 0 72 0.95 TCTT chr1 35669096 35669144 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 35673010 35673046 trf 10 3.7 10 88 7 56 69 2 0 27 1.02 AATAATAAAT chr1 35676585 35676844 trf 12 21.8 12 71 6 107 46 11 18 23 1.81 GATAGATAGATA chr1 35676585 35676844 trf 8 32.8 8 79 3 107 46 11 18 23 1.81 GATAGATA chr1 35683975 35684025 trf 2 24.5 2 95 4 91 2 0 48 50 1.12 TG chr1 35684566 35684613 trf 12 3.9 12 82 0 67 34 0 51 14 1.43 GATGATGAGGAG chr1 35685354 35685401 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 35685402 35685448 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 35688002 35688031 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 AAAC chr1 35689205 35689269 trf 2 32.0 2 91 0 101 1 3 50 45 1.27 TG chr1 35689640 35689667 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 35689986 35690021 trf 8 4.6 8 86 13 56 14 60 14 11 1.60 TGACCCCC chr1 35692064 35692110 trf 2 23.0 2 90 0 74 4 0 45 50 1.21 TG chr1 35693427 35693503 trf 2 38.5 2 86 2 109 47 0 52 0 1.00 AG chr1 35695824 35695870 trf 4 11.5 4 100 0 92 50 0 23 26 1.50 ATAG chr1 35696493 35696619 trf 12 10.5 12 89 0 144 50 8 40 0 1.33 AGAGAGAGAGAG chr1 35696493 35696619 trf 8 15.8 8 84 0 144 50 8 40 0 1.33 AGAGAGAG chr1 35696808 35696849 trf 3 13.7 3 84 0 55 36 0 63 0 0.95 AGG chr1 35696883 35697178 trf 5 56.6 5 92 7 482 61 0 38 0 0.96 GAAAG chr1 35697188 35697222 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 GA chr1 35697219 35697288 trf 8 8.6 8 100 0 138 75 0 24 0 0.81 AGAAAGAA chr1 35698449 35698490 trf 2 20.5 2 94 0 73 51 46 0 2 1.14 AC chr1 35699196 35699234 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 35703315 35703525 trf 2 111.5 2 77 15 207 0 54 0 44 1.06 CT chr1 35703715 35703748 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 35704253 35704298 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 35704870 35704902 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 35705962 35705995 trf 3 11.0 3 100 0 66 33 0 0 66 0.92 TAT chr1 35709919 35709985 trf 4 17.0 4 84 6 91 1 27 1 69 1.06 TTTC chr1 35709982 35710051 trf 4 17.0 4 93 3 120 0 49 0 50 1.00 TTCC chr1 35714912 35714951 trf 2 20.0 2 84 5 53 0 46 0 53 1.00 TC chr1 35717558 35717647 trf 2 46.5 2 75 8 69 51 40 2 5 1.38 AC chr1 35723154 35723197 trf 2 21.5 2 100 0 86 0 51 0 48 1.00 CT chr1 35726549 35726756 trf 8 25.9 8 95 0 324 44 38 16 0 1.48 CCAGCAAA chr1 35727063 35727113 trf 3 16.7 3 87 0 64 0 58 0 42 0.98 CTC chr1 35728728 35728764 trf 3 12.0 3 100 0 72 33 0 0 66 0.92 TAT chr1 35742281 35742325 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 35742666 35742750 trf 12 6.8 12 79 6 60 1 57 0 41 1.06 TCTCTCCCTCCC chr1 35742666 35742735 trf 2 35.0 2 83 2 86 1 53 0 44 1.09 TC chr1 35742669 35742747 trf 8 9.4 8 84 4 75 1 57 0 41 1.07 CTCTCTCC chr1 35742716 35742750 trf 4 8.5 4 93 0 59 0 70 0 29 0.87 CTCC chr1 35743007 35743045 trf 4 9.5 4 100 0 76 0 0 26 73 0.83 GTTT chr1 35746679 35746710 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 35746709 35746760 trf 5 10.2 5 100 0 102 60 0 39 0 0.97 AAAGG chr1 35748203 35748252 trf 2 24.5 2 100 0 98 48 51 0 0 1.00 CA chr1 35750559 35750604 trf 12 3.8 12 90 0 72 0 42 0 57 0.98 CCTTTCTTCCTT chr1 35750559 35750604 trf 4 11.2 4 80 0 54 0 42 0 57 0.98 CCTT chr1 35751264 35751308 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 35751864 35751918 trf 2 27.0 2 96 0 99 50 1 0 48 1.11 TA chr1 35754406 35754434 trf 7 4.0 7 100 0 56 14 14 28 42 1.84 ATCTGTG chr1 35757680 35757719 trf 10 3.9 10 87 12 62 17 71 0 10 1.12 CCCCACCCAT chr1 35761740 35761768 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AAAC chr1 35766583 35766632 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 35770889 35770944 trf 10 5.5 10 78 12 60 52 10 34 1 1.47 AGAGACAGAG chr1 35775088 35775116 trf 2 14.0 2 100 0 56 0 50 0 50 1.00 TC chr1 35775115 35775182 trf 2 37.0 2 76 19 67 46 52 0 1 1.09 CA chr1 35776334 35776373 trf 9 4.3 9 86 0 60 38 0 12 48 1.42 TATATATGA chr1 35776495 35776593 trf 10 9.4 10 79 8 70 37 2 12 47 1.52 ATATATATGT chr1 35776548 35776593 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 35777251 35777329 trf 5 15.6 5 100 0 156 41 0 39 19 1.51 AGATG chr1 35781927 35782179 trf 4 62.5 4 87 7 314 24 27 0 46 1.58 TATC chr1 35782590 35782629 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 35789357 35789383 trf 12 2.2 12 100 0 52 80 0 19 0 0.71 GAAAAGAAAAAA chr1 35796443 35796494 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 35798373 35798454 trf 4 20.2 4 89 0 126 29 0 70 0 0.88 GGGA chr1 35798375 35798474 trf 8 12.1 8 90 4 117 32 2 65 0 1.04 GAGGGAGA chr1 35798587 35798637 trf 4 12.5 4 100 0 100 50 0 24 26 1.50 TAGA chr1 35799171 35799370 trf 5 39.4 5 95 2 191 48 6 45 0 1.27 GAAGA chr1 35800798 35800823 trf 12 2.1 12 100 0 50 44 32 8 16 1.76 ATGCACACACAT chr1 35803930 35803965 trf 1 35.0 1 88 0 52 0 5 0 94 0.32 T chr1 35805293 35805352 trf 3 20.0 3 92 3 102 33 0 66 0 0.92 GGA chr1 35805344 35805382 trf 6 6.3 6 96 0 67 50 0 36 13 1.42 GAAGAT chr1 35806502 35806543 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 35808320 35808528 trf 7 28.7 7 65 24 69 53 1 44 0 1.09 AGAGAGA chr1 35808337 35808873 trf 10 56.0 10 79 11 254 45 0 53 0 1.03 AAGAGAGGAG chr1 35808363 35808904 trf 5 108.8 5 84 8 154 43 0 56 0 0.99 GAGGA chr1 35808865 35808922 trf 5 11.4 5 96 0 105 21 1 77 0 0.86 GAGGG chr1 35811317 35811342 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 ACAA chr1 35812936 35812968 trf 3 10.7 3 100 0 64 0 0 31 68 0.90 TTG chr1 35812983 35813008 trf 10 2.5 10 100 0 50 8 0 12 80 0.92 TTTTGTTTTA chr1 35814184 35814227 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 35816828 35816868 trf 3 13.3 3 100 0 80 0 0 35 65 0.93 GTT chr1 35820082 35820127 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 35821739 35821782 trf 9 4.7 9 85 2 59 27 0 41 30 1.56 ATGGTGATG chr1 35823875 35823904 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 35825832 35825860 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 35829910 35829940 trf 3 10.0 3 92 0 51 36 0 0 63 0.95 ATT chr1 35832620 35832655 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 35835588 35835619 trf 2 16.0 2 93 6 55 51 48 0 0 1.00 AC chr1 35836180 35836205 trf 12 2.1 12 100 0 50 60 0 40 0 0.97 AGAAGGAAGGAA chr1 35837106 35837171 trf 2 32.0 2 96 3 121 0 49 1 49 1.10 CT chr1 35839141 35839193 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 35840514 35840694 trf 7 25.7 7 100 0 360 13 57 13 14 1.65 CTCCCAG chr1 35845465 35845503 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 35847865 35847907 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 35852399 35852481 trf 4 20.5 4 100 0 164 50 0 50 0 1.00 AGGA chr1 35857113 35857145 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 35857907 35858009 trf 7 14.9 7 75 15 81 0 0 16 82 0.73 TTTTTGT chr1 35857964 35858000 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 35861422 35861465 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 35861464 35861495 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 35864748 35864775 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 35864773 35864829 trf 3 19.0 3 96 3 105 67 0 32 0 0.91 AAG chr1 35866029 35866064 trf 2 17.5 2 87 0 52 51 42 0 5 1.25 AC chr1 35872337 35872363 trf 3 8.7 3 100 0 52 69 0 0 30 0.89 AAT chr1 35874754 35874806 trf 10 5.4 10 79 6 63 0 69 0 30 0.89 CCCTCTCTCC chr1 35876637 35876719 trf 2 41.0 2 80 0 56 41 6 8 43 1.60 AT chr1 35877326 35877361 trf 2 18.0 2 94 5 63 48 51 0 0 1.00 CA chr1 35877977 35878085 trf 3 35.7 3 94 1 189 0 34 0 64 1.00 TCT chr1 35880403 35880454 trf 2 25.5 2 100 0 102 0 50 0 49 1.00 CT chr1 35880453 35880502 trf 2 24.5 2 95 0 89 48 48 0 2 1.12 CA chr1 35883293 35883368 trf 8 9.6 8 72 16 59 53 32 0 14 1.42 ATACACAC chr1 35883430 35883489 trf 11 5.8 11 75 15 56 52 28 0 18 1.46 ACACATACATA chr1 35883510 35883583 trf 11 6.5 11 73 9 51 52 28 4 15 1.61 ATACAACACAT chr1 35884864 35885077 trf 4 54.0 4 79 10 125 19 24 8 47 1.77 ATCT chr1 35885071 35885096 trf 12 2.1 12 100 0 50 8 36 16 40 1.77 CTATCTGTCTGC chr1 35886673 35886857 trf 4 46.5 4 89 6 250 47 0 26 26 1.53 ATAG chr1 35887145 35887195 trf 4 12.5 4 100 0 100 52 0 48 0 1.00 AAGG chr1 35887149 35887209 trf 12 4.9 12 93 2 57 56 0 43 0 0.99 AAGGAAGGAAAA chr1 35892881 35892919 trf 7 5.1 7 93 6 58 0 44 0 55 0.99 CTTTCTC chr1 35905108 35905170 trf 2 32.0 2 90 6 101 0 51 0 48 1.00 TC chr1 35909309 35909350 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 35911216 35911258 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 35911797 35911854 trf 2 28.5 2 80 0 60 47 42 5 5 1.48 AC chr1 35912181 35912207 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 35919268 35919332 trf 8 7.8 8 89 6 101 39 39 1 20 1.62 ACACACTT chr1 35919459 35919512 trf 4 13.2 4 100 0 106 49 0 50 0 1.00 GGAA chr1 35919509 35919567 trf 4 14.5 4 100 0 116 75 0 24 0 0.80 AAGA chr1 35920789 35920818 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 35922614 35923089 trf 8 57.4 8 75 13 360 0 34 11 53 1.42 TCTGTCTC chr1 35922614 35923101 trf 10 49.1 10 73 12 292 0 34 11 53 1.42 TCTGTCTCTC chr1 35927486 35927530 trf 8 5.5 8 91 0 61 47 43 0 9 1.35 CACACATA chr1 35927486 35927530 trf 2 22.0 2 80 0 52 47 43 0 9 1.35 CA chr1 35927525 35927555 trf 12 2.5 12 88 0 51 36 36 6 20 1.79 ACACATGCTCAC chr1 35927591 35927630 trf 2 19.5 2 94 0 69 48 0 2 48 1.15 AT chr1 35930951 35930989 trf 11 3.2 12 82 17 53 0 0 18 81 0.69 TTTTTGTTTTGT chr1 35936073 35936128 trf 12 4.6 12 93 0 92 0 43 7 49 1.30 CTCTCTCTGTCT chr1 35936073 35936128 trf 2 27.5 2 84 0 74 0 43 7 49 1.30 CT chr1 35936174 35936209 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 35937168 35937200 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 35937199 35937241 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 GA chr1 35937251 35937310 trf 4 14.8 4 100 0 118 49 0 50 0 1.00 AGGA chr1 35937678 35937704 trf 3 8.7 3 100 0 52 34 34 30 0 1.58 CAG chr1 35937749 35937790 trf 2 20.5 2 89 0 64 51 43 2 2 1.28 AC chr1 35938062 35938118 trf 4 13.8 4 83 10 51 0 8 21 69 1.15 TTTG chr1 35940155 35940288 trf 6 22.0 6 74 13 58 12 2 38 47 1.53 GTGTAT chr1 35940155 35940207 trf 2 26.0 2 92 0 86 3 0 46 50 1.20 GT chr1 35940862 35940943 trf 7 12.0 7 76 15 73 1 0 17 81 0.76 TTGTTTT chr1 35940875 35940943 trf 12 5.3 13 77 15 79 0 0 16 83 0.64 TTTTTGTTTTTTG chr1 35940895 35940943 trf 1 48.0 1 78 0 51 0 0 10 89 0.48 T chr1 35944240 35944302 trf 3 20.7 3 96 0 115 1 0 30 67 1.00 TTG chr1 35944748 35944779 trf 2 15.5 2 93 0 53 3 0 45 51 1.17 TG chr1 35949598 35949636 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 CT chr1 35951497 35951573 trf 2 38.0 2 100 0 152 0 50 0 50 1.00 TC chr1 35951573 35951618 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 35952439 35952486 trf 5 9.4 5 95 0 76 0 4 19 76 0.95 TTTTG chr1 35954390 35954419 trf 2 15.0 2 92 7 51 0 48 0 51 1.00 CT chr1 35954418 35954459 trf 2 20.5 2 94 0 73 2 0 46 51 1.14 TG chr1 35958497 35958540 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 35960311 35960350 trf 9 4.3 9 81 12 53 84 15 0 0 0.62 CAAAAAAAA chr1 35961469 35961510 trf 2 20.0 2 85 5 55 46 48 0 4 1.23 AC chr1 35965142 35965237 trf 12 7.8 12 65 15 52 42 27 29 1 1.63 CAGCAGGAACAG chr1 35965741 35965786 trf 4 11.2 4 100 0 90 75 0 0 24 0.80 AATA chr1 35966387 35966415 trf 4 7.0 4 100 0 56 25 0 25 50 1.50 ATGT chr1 35968455 35968495 trf 2 20.0 2 89 0 62 5 0 50 45 1.23 TG chr1 35970941 35971079 trf 8 17.2 8 78 3 89 3 10 36 49 1.54 GTGTGTGT chr1 35970941 35971079 trf 6 23.0 6 78 2 89 3 10 36 49 1.54 GTGTGT chr1 35972836 35972888 trf 3 17.3 3 100 0 104 32 34 0 32 1.58 CTA chr1 35975529 35975566 trf 4 9.2 4 100 0 74 75 0 0 24 0.80 ATAA chr1 35976838 35976991 trf 8 19.1 8 100 0 306 0 37 37 24 1.56 GCTCCTGG chr1 35979200 35979234 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 AC chr1 35981544 35981595 trf 2 26.0 2 88 4 77 49 47 0 3 1.20 CA chr1 35986325 35986358 trf 8 4.1 8 92 0 57 0 15 36 48 1.45 TGTGTCTG chr1 35987724 35987804 trf 2 40.5 2 82 7 92 1 53 1 43 1.16 TC chr1 35987803 35987875 trf 2 36.0 2 90 0 90 2 5 48 43 1.40 TG chr1 35987874 35987906 trf 2 16.0 2 93 0 55 46 0 53 0 1.00 GA chr1 35988771 35988800 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 35996489 35996546 trf 12 4.4 14 75 20 52 47 28 3 21 1.67 ACACACATATGCAT chr1 35996502 35996570 trf 12 5.3 13 73 19 63 47 29 1 22 1.60 TACACATATACAC chr1 35999748 35999805 trf 10 5.7 10 76 0 60 43 43 8 3 1.52 ACACACACGC chr1 35999748 35999805 trf 2 28.5 2 76 0 51 43 43 8 3 1.52 AC chr1 36001153 36001193 trf 1 40.0 1 84 0 53 92 7 0 0 0.38 A chr1 36008364 36008408 trf 4 11.0 4 90 0 52 0 0 40 59 0.98 TTGG chr1 36009775 36009862 trf 3 29.3 3 86 6 115 1 31 3 64 1.17 TCT chr1 36009867 36009996 trf 12 11.2 12 75 11 56 0 59 0 40 0.97 CCTCTTCCTCCT chr1 36009938 36009986 trf 6 8.2 6 81 4 53 0 45 0 54 0.99 CTTCCT chr1 36013174 36013200 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 AT chr1 36016164 36016232 trf 1 68.0 1 82 0 73 0 2 7 89 0.57 T chr1 36022401 36022448 trf 1 47.0 1 91 0 76 95 0 4 0 0.25 A chr1 36022433 36022496 trf 4 15.8 4 88 5 83 73 0 26 0 0.84 AAAG chr1 36023162 36023196 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 TC chr1 36023555 36024015 trf 6 76.5 6 80 5 419 44 21 17 16 1.87 AGACAT chr1 36024170 36024198 trf 3 9.3 3 100 0 56 35 32 32 0 1.58 AGC chr1 36026315 36026348 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 36028926 36029009 trf 4 20.8 4 94 0 121 0 30 0 69 0.88 TTTC chr1 36042081 36042110 trf 8 3.8 8 95 4 51 82 17 0 0 0.66 AAAAAACC chr1 36044548 36044628 trf 1 80.0 1 79 0 88 90 1 8 0 0.52 A chr1 36045130 36045165 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 36052151 36052196 trf 4 10.8 4 90 9 72 0 0 22 77 0.76 TTTG chr1 36053468 36053504 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 36054536 36054601 trf 7 9.3 7 88 8 89 0 0 10 89 0.49 TTTGTTT chr1 36054540 36054601 trf 1 61.0 1 80 0 68 0 0 9 90 0.46 T chr1 36055133 36055173 trf 10 4.0 10 96 0 71 17 20 32 30 1.95 GGTCACATGT chr1 36055830 36055860 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 36056455 36056508 trf 9 6.2 9 87 12 85 0 0 88 11 0.51 GGGGGGTGG chr1 36056455 36056508 trf 1 53.0 1 76 0 52 0 0 88 11 0.51 G chr1 36056587 36056619 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 36057362 36057389 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 36057870 36057906 trf 4 9.2 4 93 6 65 0 0 47 52 1.00 TGGT chr1 36058575 36058615 trf 6 6.5 6 91 2 62 87 12 0 0 0.54 AAAAAC chr1 36063723 36063783 trf 2 30.0 2 96 0 111 0 48 0 51 1.00 CT chr1 36066549 36066583 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 36066582 36066623 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 36068572 36068598 trf 12 2.2 12 100 0 52 0 23 69 7 1.14 GGCGGCGGTGGC chr1 36083874 36083918 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 36085059 36085113 trf 5 10.8 5 86 7 65 83 0 16 0 0.65 AAAAG chr1 36085452 36085493 trf 4 10.2 4 100 0 82 0 0 51 48 1.00 GGTT chr1 36087989 36088072 trf 2 42.0 2 95 2 150 1 0 49 49 1.08 GT chr1 36094719 36094759 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 36097336 36097719 trf 3 127.7 3 86 0 388 0 0 55 44 1.01 GTG chr1 36101245 36101292 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 36108017 36108136 trf 3 40.0 3 88 1 96 46 0 53 0 1.00 GGA chr1 36108021 36108133 trf 6 18.8 6 91 1 109 47 0 52 0 1.00 GAGGAA chr1 36113060 36113130 trf 2 36.5 2 91 8 119 0 0 51 48 1.00 TG chr1 36113603 36113683 trf 2 40.0 2 82 5 99 46 46 5 2 1.38 AC chr1 36116347 36116417 trf 10 7.0 10 95 0 122 0 67 0 32 0.91 CTCCCTCTCC chr1 36117956 36117982 trf 3 8.7 3 100 0 52 0 0 30 69 0.89 TTG chr1 36122867 36122914 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 36124479 36124586 trf 4 27.8 4 71 28 74 25 25 45 3 1.70 GCAG chr1 36126061 36126095 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 36129768 36129800 trf 5 6.4 5 100 0 64 0 0 18 81 0.70 TTGTT chr1 36133442 36133470 trf 3 9.3 3 100 0 56 0 0 35 64 0.94 GTT chr1 36134907 36135043 trf 8 17.0 8 85 0 128 0 61 0 38 0.96 TCTCTCTC chr1 36134907 36135043 trf 6 22.7 6 90 0 128 0 61 0 38 0.96 TCTCTC chr1 36137530 36137579 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 36137578 36137621 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 36139362 36139414 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 36139914 36139946 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 36139945 36140008 trf 2 31.5 2 100 0 126 50 0 49 0 1.00 AG chr1 36145780 36145826 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 36147217 36147247 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 36149895 36149939 trf 10 4.4 10 85 0 52 40 50 0 9 1.34 CACACACACA chr1 36149895 36149939 trf 6 7.3 6 92 0 52 40 50 0 9 1.34 CACACA chr1 36149895 36149939 trf 4 11.0 4 85 0 52 40 50 0 9 1.34 CACA chr1 36157292 36157326 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 36164890 36164922 trf 4 8.0 4 92 0 55 46 0 28 25 1.53 GAAT chr1 36171234 36171263 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 36171528 36171567 trf 2 20.0 2 89 5 62 48 48 2 0 1.15 AC chr1 36173037 36173077 trf 4 10.0 4 94 0 71 50 22 25 2 1.62 CAGA chr1 36179241 36179277 trf 11 3.3 11 100 0 72 19 0 16 63 1.30 TATTTTATGTG chr1 36181546 36181579 trf 4 8.2 4 93 0 57 24 0 51 24 1.48 ATGG chr1 36181573 36181600 trf 12 2.2 12 100 0 54 33 14 40 11 1.82 GATGGACGGACA chr1 36181791 36181837 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 GT chr1 36182987 36183029 trf 12 3.5 12 100 0 84 16 35 30 16 1.92 GCTCACACGGTG chr1 36188055 36188098 trf 2 21.5 2 95 0 77 48 48 0 2 1.14 CA chr1 36189780 36189813 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 36191032 36191071 trf 10 4.1 9 90 9 60 41 2 0 56 1.13 TATATATTA chr1 36195679 36195709 trf 4 7.5 4 92 0 51 50 23 23 3 1.64 AGAC chr1 36196081 36196123 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 36201217 36201277 trf 4 15.2 4 92 3 104 26 1 48 23 1.60 ATGG chr1 36207049 36207076 trf 4 6.8 4 100 0 54 74 0 0 25 0.83 AATA chr1 36207363 36207407 trf 2 22.0 2 95 0 70 50 45 0 4 1.22 CA chr1 36207565 36207601 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 36220318 36220363 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 36222065 36222106 trf 2 20.5 2 94 0 73 48 48 0 2 1.14 AC chr1 36222882 36223052 trf 12 14.2 12 84 0 187 44 45 5 4 1.47 CACACACACACA chr1 36222882 36223052 trf 10 17.0 10 89 0 187 44 45 5 4 1.47 CACACACACA chr1 36225155 36225211 trf 2 28.0 2 96 0 103 51 48 0 0 1.00 AC chr1 36230856 36230893 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 36237567 36237607 trf 5 8.0 5 100 0 80 0 0 40 60 0.97 TTTGG chr1 36238335 36238364 trf 4 7.2 4 100 0 58 48 0 0 51 1.00 TAAT chr1 36239105 36239139 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 AC chr1 36240074 36240137 trf 5 12.6 5 100 0 126 0 0 38 61 0.96 TTTGG chr1 36241429 36241457 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 36242503 36242532 trf 2 15.0 2 92 7 51 0 0 51 48 1.00 GT chr1 36247532 36247561 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 36248540 36248636 trf 6 16.7 6 71 16 60 47 10 38 3 1.53 GAGACA chr1 36248540 36248648 trf 12 8.7 12 71 18 87 48 10 38 2 1.52 GAGAGAGAGACA chr1 36248986 36249023 trf 2 18.5 2 94 0 65 48 48 0 2 1.15 CA chr1 36252735 36252762 trf 4 6.8 4 100 0 54 25 0 22 51 1.48 ATTG chr1 36253416 36253461 trf 4 11.2 4 85 0 63 26 26 2 44 1.66 CATT chr1 36253459 36253496 trf 2 18.5 2 100 0 74 0 48 0 51 1.00 TC chr1 36253509 36253536 trf 4 6.8 4 100 0 54 0 22 25 51 1.48 TGTC chr1 36253974 36254015 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 36256348 36256381 trf 12 2.7 12 95 4 57 72 27 0 0 0.85 CAAAAACAACAA chr1 36257032 36257060 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 36257057 36257093 trf 4 9.0 4 100 0 72 0 25 50 25 1.50 GTGC chr1 36257090 36257120 trf 4 7.5 4 100 0 60 0 46 26 26 1.53 TGCC chr1 36260065 36260242 trf 9 19.6 9 78 12 105 55 0 44 0 1.04 GAGGAAGAA chr1 36260065 36260284 trf 6 35.8 6 83 10 83 51 0 48 0 1.04 GAGGAA chr1 36260098 36260239 trf 3 46.7 3 84 4 176 58 0 41 0 0.98 GAA chr1 36260237 36260286 trf 3 16.3 3 100 0 98 32 0 67 0 0.91 GAG chr1 36263232 36263327 trf 4 23.8 4 91 8 158 0 24 0 75 0.80 TTTC chr1 36263707 36263771 trf 8 8.4 8 84 10 71 39 0 10 50 1.38 TATGTATA chr1 36263711 36263777 trf 12 5.4 12 89 3 96 39 0 10 50 1.37 TATGTATATATA chr1 36263727 36263865 trf 2 69.0 2 82 2 80 39 2 12 44 1.57 TA chr1 36267684 36267714 trf 8 3.8 8 100 0 60 10 10 40 40 1.72 TGTGTGCA chr1 36268797 36268834 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 36272504 36272554 trf 6 8.7 6 77 16 52 4 68 0 28 1.08 TCCCTC chr1 36274288 36274313 trf 11 2.3 11 100 0 50 0 8 92 0 0.40 GGGGGGGGCGG chr1 36277090 36277213 trf 6 20.8 6 96 3 232 51 0 48 0 1.00 GAGAAG chr1 36279112 36279148 trf 2 18.0 2 94 0 63 52 47 0 0 1.00 AC chr1 36281504 36281538 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 36284343 36284370 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 36284506 36284586 trf 6 12.8 6 75 17 65 78 20 0 1 0.81 AAAAAC chr1 36284506 36284587 trf 7 11.7 7 73 20 64 79 19 0 1 0.81 AAAAACA chr1 36284514 36284559 trf 4 12.2 4 77 17 53 82 17 0 0 0.68 AAAC chr1 36287099 36287156 trf 3 18.7 3 96 3 105 68 0 0 31 0.90 AAT chr1 36288431 36288464 trf 2 16.5 2 100 0 66 51 0 48 0 1.00 AG chr1 36291097 36291126 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 36291125 36291160 trf 4 8.8 4 100 0 70 51 0 25 22 1.48 AGAT chr1 36296063 36296149 trf 4 21.2 4 95 2 154 26 0 73 0 0.84 GGAG chr1 36301853 36301880 trf 6 4.5 6 100 0 54 0 48 18 33 1.49 CTGTCC chr1 36301893 36301937 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 36302777 36302811 trf 4 8.2 4 93 6 59 47 0 0 52 1.00 TAAT chr1 36304387 36304435 trf 4 12.0 4 95 0 87 27 0 47 25 1.52 TGGA chr1 36305303 36305328 trf 2 12.5 2 100 0 50 52 0 48 0 1.00 AG chr1 36313978 36314040 trf 3 21.3 3 73 23 53 0 66 0 33 0.92 TCC chr1 36313978 36314040 trf 12 5.3 12 82 7 67 0 66 0 33 0.92 TCCTCCCCTCCC chr1 36313979 36314032 trf 8 6.6 8 79 14 56 0 67 0 32 0.91 CCTCCTCC chr1 36316009 36316041 trf 4 8.0 4 100 0 64 0 25 25 50 1.50 TCTG chr1 36324424 36324473 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 36338653 36338704 trf 9 5.7 9 77 9 50 47 0 52 0 1.00 GGAGGAAGA chr1 36340307 36340359 trf 2 26.0 2 96 0 95 50 48 0 1 1.12 AC chr1 36342023 36342048 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 36349581 36349634 trf 2 26.5 2 100 0 106 49 50 0 0 1.00 CA chr1 36352958 36352988 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 TA chr1 36363496 36363525 trf 5 5.8 5 100 0 58 0 0 17 82 0.66 TTTTG chr1 36364786 36364827 trf 3 13.7 3 100 0 82 34 0 0 65 0.93 ATT chr1 36364826 36364863 trf 2 18.5 2 94 0 56 5 0 43 51 1.24 TG chr1 36365870 36365897 trf 11 2.5 11 100 0 54 0 0 7 92 0.38 TTTTTTTTGTT chr1 36367052 36367080 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 36370693 36370730 trf 6 6.2 6 90 9 58 0 0 18 81 0.70 TTGTTT chr1 36373461 36373486 trf 4 6.2 4 100 0 50 48 0 0 52 1.00 TTAA chr1 36376564 36376613 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 36381119 36381167 trf 2 24.0 2 95 0 87 2 0 50 47 1.12 TG chr1 36381518 36381720 trf 2 103.5 2 74 6 83 7 6 36 49 1.57 TG chr1 36383443 36383487 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 36383984 36384048 trf 2 32.0 2 93 0 110 0 3 50 46 1.17 TG chr1 36384465 36384492 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 36385836 36385898 trf 12 5.5 12 77 14 78 45 40 4 9 1.58 CACACATGTACA chr1 36385845 36385927 trf 2 41.0 2 90 0 110 47 45 2 4 1.37 AC chr1 36390718 36390750 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 CT chr1 36391292 36391327 trf 12 2.9 12 95 0 61 2 0 42 54 1.15 TTGTGTGTGTGT chr1 36391293 36391327 trf 2 17.0 2 87 0 50 2 0 44 52 1.16 TG chr1 36391421 36391468 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 36391587 36391720 trf 4 33.0 4 90 4 142 66 0 33 0 0.92 AAAG chr1 36391945 36392000 trf 8 6.9 8 85 0 56 5 3 36 54 1.41 TGTGTGTA chr1 36391945 36392000 trf 12 4.6 12 83 0 65 5 3 36 54 1.41 TGTGTGTTTGTG chr1 36392518 36392575 trf 2 28.5 2 96 0 105 1 0 49 49 1.11 GT chr1 36394948 36395196 trf 6 41.2 6 98 0 334 0 39 0 60 0.97 TTCTTC chr1 36395245 36395281 trf 12 3.0 12 95 0 63 19 72 0 8 1.10 TCCCCCACCCAC chr1 36398567 36398633 trf 4 16.5 4 96 0 96 50 6 25 18 1.70 GATA chr1 36399273 36399325 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 36405044 36405101 trf 2 28.5 2 100 0 114 50 49 0 0 1.00 AC chr1 36414477 36414525 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 36414524 36414564 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 36431374 36431408 trf 5 6.8 5 93 0 59 0 2 17 79 0.86 TTTTG chr1 36431676 36431719 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 36431976 36432007 trf 6 5.2 6 100 0 62 83 16 0 0 0.64 AAAAAC chr1 36438536 36438620 trf 6 14.3 6 88 2 91 53 5 40 0 1.25 AGAGAG chr1 36440991 36441060 trf 12 5.8 12 91 0 84 63 0 36 0 0.94 AAAGAAAGGAAG chr1 36440991 36441059 trf 4 17.0 4 96 0 73 64 0 35 0 0.94 AAAG chr1 36444156 36444208 trf 12 4.2 11 84 15 50 76 0 0 23 0.78 AAAATAAATAA chr1 36444157 36444188 trf 4 7.8 4 100 0 62 77 0 0 22 0.77 AAAT chr1 36447895 36447927 trf 4 8.0 4 100 0 64 0 0 25 75 0.81 GTTT chr1 36448030 36448073 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 36448311 36448361 trf 4 12.5 4 91 0 64 68 0 8 24 1.16 ATAA chr1 36452353 36452396 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 36452770 36452821 trf 6 8.5 6 100 0 102 33 0 66 0 0.92 GGAGAG chr1 36452867 36452920 trf 2 26.5 2 96 0 97 50 47 0 1 1.12 AC chr1 36453009 36453044 trf 4 9.0 4 87 6 54 2 0 22 74 0.95 TTTG chr1 36453742 36453785 trf 2 21.5 2 90 0 68 51 44 0 4 1.22 AC chr1 36453995 36454020 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 36455214 36455256 trf 12 3.7 12 84 6 52 42 35 7 14 1.73 CACACACATATG chr1 36455238 36455274 trf 2 18.0 2 94 0 63 50 47 0 2 1.15 CA chr1 36456650 36456705 trf 11 5.3 10 85 8 58 56 29 0 14 1.39 ACATACATCA chr1 36456650 36456693 trf 4 11.8 4 85 14 58 53 27 0 18 1.45 ACAT chr1 36456665 36456712 trf 3 14.3 3 91 8 58 61 29 0 8 1.25 ACA chr1 36457954 36457998 trf 2 22.0 2 95 0 79 52 0 47 0 1.00 AG chr1 36460028 36460071 trf 2 22.0 2 90 4 70 48 48 0 2 1.14 AC chr1 36461836 36461886 trf 2 25.0 2 81 0 55 52 8 40 0 1.31 AG chr1 36461840 36461886 trf 12 3.8 12 91 0 74 52 8 39 0 1.33 AGAGAGAGAGAC chr1 36462856 36463129 trf 10 28.5 10 67 19 102 47 31 2 18 1.62 ACACACATAT chr1 36462890 36463147 trf 12 21.9 12 69 15 137 47 32 1 18 1.60 ATACACACACAT chr1 36462935 36463003 trf 2 34.0 2 82 5 66 48 41 0 10 1.37 CA chr1 36463040 36463178 trf 2 69.0 2 74 8 57 49 35 2 12 1.55 CA chr1 36466598 36466666 trf 3 22.7 3 96 0 127 1 32 0 66 1.01 TTC chr1 36468819 36468860 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 36469777 36469822 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 36470678 36470742 trf 1 64.0 1 80 0 74 90 9 0 0 0.45 A chr1 36476209 36476250 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 36482919 36482949 trf 4 7.5 4 92 0 51 0 73 0 26 0.84 CCCT chr1 36483649 36483689 trf 4 10.0 4 100 0 80 25 0 0 75 0.81 TTTA chr1 36484622 36484787 trf 10 15.9 10 81 11 190 0 41 10 48 1.37 TCTCTCTCTG chr1 36490124 36490152 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 36491368 36491428 trf 2 30.0 2 100 0 120 0 50 0 50 1.00 TC chr1 36493448 36493487 trf 5 7.8 5 88 0 60 5 0 76 17 0.96 GGGGT chr1 36494917 36495676 trf 10 75.9 10 63 7 144 8 5 50 35 1.54 GGTGTTGTGG chr1 36497042 36497107 trf 9 7.4 9 70 19 57 67 0 32 0 0.91 AAGAAAAGG chr1 36502272 36502309 trf 2 18.5 2 88 0 56 45 48 0 5 1.25 AC chr1 36506090 36506156 trf 2 33.0 2 93 0 114 3 0 50 46 1.16 GT chr1 36506833 36506859 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 36514120 36514159 trf 4 9.0 4 91 8 51 0 0 23 76 0.78 TTTG chr1 36515794 36515824 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 36526945 36526971 trf 12 2.2 12 100 0 52 23 30 15 30 1.95 CCATAGACTGTT chr1 36527535 36527562 trf 12 2.2 12 100 0 54 14 25 22 37 1.93 TCTCTTGGGAAC chr1 36527870 36527902 trf 4 8.5 4 86 13 50 0 0 21 78 0.76 TTGT chr1 36536916 36536946 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 36536943 36536995 trf 4 12.2 4 84 11 68 76 0 23 0 0.78 AAAG chr1 36539565 36539602 trf 2 18.5 2 100 0 74 48 0 51 0 1.00 GA chr1 36541002 36541028 trf 12 2.2 12 100 0 52 34 7 42 15 1.75 GATGGACAGATG chr1 36542480 36542505 trf 3 8.3 3 100 0 50 36 64 0 0 0.94 ACC chr1 36545053 36545088 trf 12 2.9 12 86 0 52 42 0 8 48 1.33 ATATATATGTAT chr1 36545083 36545108 trf 12 2.1 12 100 0 50 52 8 16 24 1.70 ATGTAATCAAAG chr1 36558426 36558460 trf 11 3.0 11 83 8 50 5 8 82 2 0.93 GGCGGGGAGGG chr1 36564484 36564509 trf 3 8.3 3 100 0 50 32 0 68 0 0.90 GAG chr1 36565613 36565642 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 36567279 36567325 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 36569611 36569661 trf 2 25.0 2 95 0 91 2 0 48 50 1.12 GT chr1 36570701 36570729 trf 5 5.6 5 100 0 56 17 60 21 0 1.36 GCCCA chr1 36574569 36574612 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 36578873 36578922 trf 2 24.5 2 95 0 89 46 51 0 2 1.12 CA chr1 36585009 36585035 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 36586507 36586538 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 36588682 36588712 trf 2 15.5 2 93 6 53 46 53 0 0 1.00 CA chr1 36593772 36593806 trf 4 8.5 4 86 0 50 50 23 0 26 1.50 ATAC chr1 36596553 36596708 trf 8 18.9 8 72 15 86 0 33 1 64 1.05 TTCCTTTC chr1 36596561 36596695 trf 4 33.2 4 75 12 89 0 32 0 66 0.97 TTCT chr1 36596572 36596693 trf 5 26.6 5 75 17 79 0 33 0 65 0.99 TTCCT chr1 36596711 36596749 trf 2 19.5 2 94 5 69 0 50 0 50 1.00 TC chr1 36597602 36597653 trf 4 12.8 4 100 0 102 23 0 0 76 0.79 TTTA chr1 36607577 36607664 trf 2 43.5 2 88 0 129 0 47 3 49 1.18 CT chr1 36612254 36612287 trf 5 6.8 5 96 3 59 84 15 0 0 0.61 AAAAC chr1 36623133 36623173 trf 4 10.0 4 88 0 53 47 30 2 20 1.63 ACAT chr1 36623262 36623350 trf 2 47.0 2 73 13 71 1 52 0 46 1.08 TC chr1 36624162 36624224 trf 1 62.0 1 77 0 61 0 11 0 88 0.51 T chr1 36624163 36624221 trf 5 11.8 5 90 1 82 0 12 0 87 0.53 TTTTC chr1 36632687 36632736 trf 4 12.2 4 100 0 98 24 0 24 51 1.49 TATG chr1 36637805 36638028 trf 5 44.6 5 99 0 203 36 0 63 0 0.95 GAGGA chr1 36638322 36638347 trf 12 2.1 12 100 0 50 60 8 16 16 1.58 AACAGAATGAAT chr1 36638753 36638821 trf 2 35.0 2 91 5 113 0 50 0 50 1.00 TC chr1 36639320 36639365 trf 4 11.2 4 85 0 63 68 24 6 0 1.13 AAAC chr1 36648528 36648554 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 36648562 36648644 trf 3 27.0 3 80 7 94 37 0 62 0 0.96 GGA chr1 36648563 36648660 trf 6 15.5 6 73 12 52 42 0 57 0 0.98 GAGGAA chr1 36648929 36648985 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 CT chr1 36653588 36653647 trf 8 7.4 8 74 14 59 49 11 37 1 1.50 AGACAGAG chr1 36656718 36656752 trf 1 34.0 1 87 0 50 94 5 0 0 0.32 A chr1 36661810 36661838 trf 4 7.0 4 100 0 56 50 25 0 25 1.50 CAAT chr1 36662606 36662656 trf 3 17.0 3 91 4 84 64 0 2 34 1.05 TAA chr1 36663320 36663407 trf 5 17.6 5 93 2 149 57 0 42 0 0.98 AAGAG chr1 36664226 36664252 trf 5 5.2 5 100 0 52 76 23 0 0 0.78 CAAAA chr1 36666856 36666889 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 36667904 36667933 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 36668655 36668702 trf 3 15.7 3 100 0 94 68 0 0 31 0.90 AAT chr1 36671148 36671183 trf 4 8.8 4 93 0 61 74 22 0 2 0.95 AAAC chr1 36671940 36671970 trf 7 4.3 7 100 0 60 30 0 70 0 0.88 AGGAGGG chr1 36673856 36673885 trf 3 9.7 3 100 0 58 68 31 0 0 0.89 AAC chr1 36678043 36678080 trf 7 4.9 8 93 6 60 75 24 0 0 0.80 CAAAAAAC chr1 36678117 36678161 trf 10 4.5 10 78 16 56 6 15 0 77 0.97 TTTTTTTCCA chr1 36681359 36681418 trf 2 29.5 2 96 0 109 47 50 0 1 1.11 CA chr1 36686476 36686518 trf 2 21.0 2 95 0 75 50 47 0 2 1.14 AC chr1 36702348 36702403 trf 2 28.0 2 92 3 76 43 50 5 0 1.25 AC chr1 36705553 36705597 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 36706729 36706769 trf 2 20.0 2 94 0 71 52 47 0 0 1.00 AC chr1 36710877 36710944 trf 2 34.0 2 90 3 109 47 0 0 52 1.00 TA chr1 36716516 36716544 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 36721952 36721988 trf 2 18.0 2 88 0 54 47 47 2 2 1.31 AC chr1 36722018 36722144 trf 10 10.8 12 68 27 58 40 40 11 7 1.70 GCACACACACAT chr1 36726570 36726614 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 36726766 36727236 trf 12 37.9 12 86 9 624 34 7 57 0 1.31 AGGAGGAGGAGC chr1 36729270 36729467 trf 2 98.5 2 68 13 66 45 40 0 14 1.49 AC chr1 36730519 36730545 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AAAC chr1 36732856 36732882 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 36732948 36732992 trf 2 22.0 2 86 9 63 45 50 4 0 1.22 CA chr1 36736193 36736228 trf 4 8.8 4 100 0 70 74 0 0 25 0.82 AATA chr1 36736915 36736974 trf 4 15.0 4 96 3 111 25 25 0 49 1.51 TATC chr1 36738959 36739002 trf 2 21.5 2 95 0 77 46 0 53 0 1.00 GA chr1 36741308 36741351 trf 6 7.0 6 80 15 52 37 2 60 0 1.10 GGAGAG chr1 36742683 36742723 trf 5 8.2 5 94 5 73 0 0 17 82 0.67 TGTTT chr1 36743838 36743869 trf 2 15.5 2 93 0 53 48 48 0 3 1.17 CA chr1 36749782 36750006 trf 10 23.1 10 68 15 105 18 3 29 48 1.65 ATGTATGTGT chr1 36749785 36750005 trf 12 18.4 12 66 18 68 18 3 29 48 1.65 TGTGTGTATGTA chr1 36751896 36752155 trf 8 31.4 8 68 13 71 20 2 28 48 1.63 TGTATGTG chr1 36752004 36752137 trf 4 34.2 4 72 14 100 21 0 30 48 1.51 TATG chr1 36752008 36752099 trf 10 7.8 12 67 20 59 19 0 31 48 1.50 TGTGTATGTGTA chr1 36752008 36752099 trf 6 15.5 6 70 21 59 19 0 31 48 1.50 TGTGTA chr1 36752780 36752829 trf 2 24.5 2 100 0 98 48 51 0 0 1.00 CA chr1 36755645 36755675 trf 3 10.0 3 92 0 51 63 0 3 33 1.11 ATA chr1 36757483 36757527 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 36757527 36757559 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 36758352 36758379 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 36759277 36759326 trf 8 6.1 8 90 0 80 40 24 22 12 1.88 GAGCAATC chr1 36759826 36759858 trf 4 8.5 4 86 13 50 78 21 0 0 0.76 AAAC chr1 36760083 36760131 trf 2 24.0 2 95 0 87 2 0 47 50 1.12 TG chr1 36767222 36767315 trf 10 9.6 9 91 6 53 44 0 55 0 0.99 GAGAGGAGG chr1 36767250 36767316 trf 2 33.0 2 100 0 132 50 0 50 0 1.00 GA chr1 36769230 36769279 trf 2 25.0 2 95 4 91 48 51 0 0 1.00 AC chr1 36770390 36770422 trf 1 32.0 1 100 0 64 0 0 0 100 0.00 T chr1 36779971 36780011 trf 2 20.0 2 94 0 71 47 0 52 0 1.00 AG chr1 36780005 36780032 trf 12 2.2 12 100 0 54 44 14 40 0 1.46 AGAGAGGCAGAC chr1 36780027 36780110 trf 12 6.9 12 73 5 60 50 27 20 1 1.56 ACAGAGACACAC chr1 36780038 36780118 trf 10 8.0 10 73 20 60 51 25 22 1 1.56 CACAGAGACA chr1 36780392 36780539 trf 4 37.8 4 71 10 72 51 26 20 2 1.59 ACAG chr1 36783834 36783875 trf 8 5.1 8 90 0 55 0 39 26 34 1.57 GCCTGTCT chr1 36783834 36783880 trf 12 3.8 12 85 0 65 0 39 26 34 1.57 GCCTGTCTGCCT chr1 36788741 36788782 trf 2 22.0 2 80 14 52 0 51 0 48 1.00 TC chr1 36788800 36788830 trf 11 2.7 11 94 0 51 53 43 0 3 1.17 CACACACAACA chr1 36790225 36790251 trf 4 6.5 4 100 0 52 0 46 26 26 1.53 TGCC chr1 36797206 36797245 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 36797716 36797760 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 36814195 36814228 trf 10 3.3 10 100 0 66 39 9 30 21 1.84 TAGAACTGGA chr1 36820446 36820477 trf 1 31.0 1 93 0 53 96 0 3 0 0.21 A chr1 36830559 36830604 trf 4 11.2 4 100 0 90 75 0 0 24 0.80 AATA chr1 36841390 36841427 trf 4 9.2 4 100 0 74 75 24 0 0 0.80 ACAA chr1 36850262 36850324 trf 4 15.5 4 100 0 124 74 0 25 0 0.82 AGAA chr1 36860276 36860309 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 36862708 36862777 trf 2 34.5 2 100 0 138 0 49 0 50 1.00 TC chr1 36863694 36863725 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 36864229 36864264 trf 2 17.5 2 93 0 61 2 0 45 51 1.16 TG chr1 36870088 36870146 trf 2 29.0 2 96 0 107 51 48 0 0 1.00 AC chr1 36870599 36870643 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 36870867 36870900 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 36872905 36872945 trf 5 7.8 5 97 2 71 80 20 0 0 0.72 AAAAC chr1 36872935 36872973 trf 7 5.4 7 100 0 76 73 26 0 0 0.83 AAAACCA chr1 36888599 36888644 trf 4 11.2 4 100 0 90 51 0 48 0 1.00 AAGG chr1 36892153 36892203 trf 5 10.4 5 91 8 86 78 22 0 0 0.76 CAAAA chr1 36892491 36892534 trf 4 10.8 4 94 0 77 25 0 72 2 0.97 AGGG chr1 36902300 36902337 trf 5 7.6 5 93 6 67 81 18 0 0 0.70 AAAAC chr1 36903712 36903747 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 36906966 36906991 trf 9 2.8 9 100 0 50 80 20 0 0 0.72 AAACAAAAC chr1 36907083 36907112 trf 12 2.3 13 94 5 51 10 6 34 48 1.64 TGTGTGTGTACTA chr1 36910238 36910350 trf 8 14.0 8 100 0 224 37 12 50 0 1.41 AGAGGCAG chr1 36910924 36910973 trf 8 6.1 8 90 0 62 20 0 16 63 1.31 TTTATGTA chr1 36913561 36913599 trf 11 3.8 10 86 13 60 0 0 10 89 0.49 TTTTTTTGTT chr1 36923330 36923358 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 36925714 36925739 trf 5 5.0 5 100 0 50 80 20 0 0 0.72 AAAAC chr1 36930384 36930414 trf 4 7.5 4 92 0 51 0 0 23 76 0.78 TGTT chr1 36930831 36930871 trf 12 3.3 12 89 0 62 40 0 35 25 1.56 GAGTGAATGAAT chr1 36930834 36930869 trf 4 8.8 4 93 0 52 42 0 31 25 1.55 TGAA chr1 36933001 36933037 trf 8 4.6 8 86 6 56 86 0 13 0 0.58 AAAAAAAG chr1 36933002 36933037 trf 7 4.7 7 86 13 52 85 0 14 0 0.59 AAAAAAG chr1 36937082 36937128 trf 6 7.8 6 77 22 53 80 17 2 0 0.81 AAAACA chr1 36942839 36942886 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 36946706 36946732 trf 7 3.7 7 100 0 52 76 23 0 0 0.78 AAAAACC chr1 36948568 36948602 trf 6 5.5 6 96 3 59 0 0 17 82 0.67 TTTGTT chr1 36950667 36950718 trf 4 12.8 4 100 0 102 50 0 23 25 1.49 ATAG chr1 36950823 36950933 trf 8 13.8 8 79 8 73 0 20 0 78 0.87 TTTTTTCT chr1 36950859 36950915 trf 4 13.8 4 94 1 85 0 26 0 73 0.84 TTTC chr1 36959267 36959294 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 36959965 36960035 trf 4 17.5 4 100 0 140 0 25 0 74 0.82 TCTT chr1 36964065 36964339 trf 9 30.4 9 71 10 125 12 51 0 36 1.40 CCATCTTCC chr1 36964084 36964327 trf 9 27.1 9 70 18 143 12 51 0 35 1.39 CATCCTTCC chr1 36968274 36968654 trf 2 192.0 2 75 2 219 46 40 2 10 1.53 AC chr1 36969774 36969807 trf 6 5.5 6 92 0 57 0 3 81 15 0.80 GGGGTG chr1 36970856 36970897 trf 4 11.0 4 80 15 52 0 0 17 82 0.66 GTTT chr1 36970858 36970899 trf 7 5.7 7 94 5 73 0 0 14 85 0.60 TTTTTTG chr1 36971396 36971422 trf 5 5.2 5 100 0 52 19 19 61 0 1.35 GGGCA chr1 36972399 36972458 trf 10 5.7 10 88 4 73 89 10 0 0 0.47 AAAAAAACAA chr1 36972399 36972458 trf 1 59.0 1 79 0 64 89 10 0 0 0.47 A chr1 36973352 36973398 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 GT chr1 36974513 36974567 trf 8 6.8 8 83 8 74 64 0 35 0 0.94 AAGAAAGG chr1 36974571 36974597 trf 4 6.5 4 100 0 52 50 26 23 0 1.50 CAGA chr1 36976660 36976703 trf 2 21.5 2 95 0 77 51 46 2 0 1.13 AC chr1 36977388 36977460 trf 2 36.0 2 91 0 117 48 0 51 0 1.00 GA chr1 36979618 36979664 trf 5 9.0 5 90 4 74 76 23 0 0 0.79 AACAA chr1 36981033 36981090 trf 5 11.8 5 92 7 100 61 38 0 0 0.96 AAACC chr1 36981291 36981321 trf 3 10.0 3 100 0 60 33 0 0 66 0.92 TTA chr1 36982086 36982145 trf 2 29.5 2 100 0 118 0 0 50 49 1.00 GT chr1 36982563 36982612 trf 4 12.2 4 100 0 98 51 48 0 0 1.00 AACC chr1 36983373 36983411 trf 4 9.8 4 94 5 69 23 0 0 76 0.79 TTTA chr1 36984917 36984963 trf 4 11.0 4 93 6 74 0 50 0 50 1.00 CCTT chr1 36989181 36989206 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 36989205 36989236 trf 4 7.8 4 100 0 62 0 22 0 77 0.77 TTTC chr1 36994892 36994922 trf 3 10.0 3 100 0 60 0 0 66 33 0.92 GTG chr1 36995214 36995394 trf 8 22.6 8 67 16 52 45 26 5 23 1.73 TACATACA chr1 36995296 36995415 trf 10 11.7 10 72 13 66 46 28 5 20 1.71 ACACATATAC chr1 36995302 36995425 trf 12 9.8 12 69 16 79 46 29 5 18 1.72 ATACACACATAC chr1 36998966 36999030 trf 10 6.3 10 77 14 51 48 18 0 32 1.49 TACATATATA chr1 37000927 37000952 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 37002932 37003003 trf 4 17.8 4 97 0 124 0 52 0 47 1.00 TTCC chr1 37003004 37003080 trf 4 19.2 4 94 2 136 0 26 0 73 0.83 TTTC chr1 37005563 37005600 trf 4 9.8 4 88 11 60 75 24 0 0 0.80 AAAC chr1 37006138 37006387 trf 11 22.2 11 66 18 79 43 36 2 17 1.62 CACACACATCA chr1 37006184 37006395 trf 9 22.3 9 70 13 131 42 36 2 17 1.64 CACACACAT chr1 37006310 37006433 trf 11 11.1 11 68 14 65 43 35 1 19 1.61 ACACATCACAT chr1 37011673 37011716 trf 7 5.9 7 94 5 68 83 16 0 0 0.64 AAAAAAC chr1 37011676 37011718 trf 4 11.0 4 85 10 61 80 19 0 0 0.70 AAAC chr1 37023655 37023682 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 37024361 37024689 trf 6 56.0 6 93 4 537 47 32 19 0 1.49 CACAGA chr1 37027929 37027956 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 ATTT chr1 37028775 37028806 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 37032388 37032468 trf 4 20.0 4 78 0 79 46 45 0 8 1.34 CACA chr1 37032402 37032468 trf 6 10.7 6 79 6 51 42 46 0 10 1.38 CACACT chr1 37032403 37032462 trf 10 5.9 10 83 0 55 44 45 0 10 1.37 ACACACACAT chr1 37032414 37032463 trf 10 5.1 10 82 9 66 42 48 0 8 1.32 CACACTCACA chr1 37036053 37036155 trf 12 8.4 12 67 18 50 13 9 37 39 1.78 TGTGTGCATGCA chr1 37036075 37036148 trf 10 7.1 10 70 14 51 13 9 38 38 1.78 GTGTGTGCAT chr1 37036187 37036226 trf 2 19.5 2 83 0 51 5 0 43 51 1.24 TG chr1 37036575 37036640 trf 5 13.0 5 98 0 121 0 21 0 78 0.75 CTTTT chr1 37038312 37038343 trf 12 2.6 12 89 0 53 80 19 0 0 0.71 CAAAAAAACAAA chr1 37041839 37041902 trf 4 15.8 4 86 6 76 22 1 1 74 0.99 TTTA chr1 37044724 37044760 trf 5 7.2 5 100 0 72 19 0 0 80 0.71 TATTT chr1 37047035 37047086 trf 3 17.0 3 100 0 102 66 0 0 33 0.92 AAT chr1 37049281 37049312 trf 9 3.6 9 95 4 55 0 0 6 93 0.35 TTTTTTGTT chr1 37050720 37050781 trf 8 7.2 8 81 15 70 81 18 0 0 0.68 AAAAACAA chr1 37050722 37050780 trf 4 13.8 4 79 13 55 81 18 0 0 0.70 AAAC chr1 37050728 37050782 trf 5 12.0 5 81 15 57 79 20 0 0 0.73 AAAAC chr1 37052196 37052286 trf 12 7.4 12 73 12 69 37 1 61 0 1.04 AGAGGGAAGGAG chr1 37053959 37054005 trf 6 7.7 6 85 0 56 2 8 54 34 1.43 TGTGGC chr1 37054324 37054364 trf 8 5.0 8 88 11 64 0 0 15 85 0.61 TTTTGTTT chr1 37057888 37057947 trf 11 5.5 10 76 21 57 84 11 3 0 0.73 AAAAAAACAA chr1 37059664 37059728 trf 8 8.5 8 78 13 55 17 1 31 50 1.55 TGTGTGTA chr1 37059689 37059727 trf 4 9.8 4 88 5 60 21 0 26 52 1.47 TGTA chr1 37061827 37061854 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 37066467 37066501 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 37067912 37067941 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 37070127 37070209 trf 11 7.8 11 67 19 59 19 69 0 10 1.17 ACCCCACCCTC chr1 37072190 37072302 trf 6 16.7 6 72 20 80 20 13 46 19 1.83 GGTGCA chr1 37073515 37073560 trf 7 6.1 8 80 19 62 0 0 13 86 0.57 GTTTTTTT chr1 37073516 37073559 trf 1 43.0 1 80 0 50 0 0 9 90 0.45 T chr1 37083581 37083642 trf 4 15.2 4 85 0 59 0 54 0 45 1.00 TCTC chr1 37083686 37083714 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 37084015 37084053 trf 12 3.2 12 92 0 58 23 55 7 13 1.64 CCCACTGCCACA chr1 37085358 37085406 trf 12 4.2 12 73 24 50 22 2 27 47 1.62 GTATGTAGATTT chr1 37085516 37085552 trf 2 18.5 2 94 5 65 0 0 50 50 1.00 TG chr1 37088095 37088130 trf 11 3.1 11 88 8 52 17 80 0 2 0.84 CACCCCCACCC chr1 37088095 37088130 trf 6 6.0 6 86 6 54 17 80 0 2 0.84 CACCCC chr1 37089760 37089821 trf 2 31.0 2 96 3 115 49 0 50 0 1.00 AG chr1 37091550 37091584 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 37091597 37091638 trf 4 10.2 4 100 0 82 24 0 24 51 1.49 TGTA chr1 37092707 37092755 trf 4 12.0 4 90 0 51 72 8 0 18 1.08 AAAT chr1 37096689 37096717 trf 4 7.0 4 100 0 56 0 75 0 25 0.81 TCCC chr1 37098580 37098608 trf 4 7.0 4 100 0 56 25 0 0 75 0.81 TTTA chr1 37098773 37098809 trf 4 9.0 4 100 0 72 25 0 25 50 1.50 GATT chr1 37099512 37099561 trf 5 10.0 5 84 6 57 77 22 0 0 0.77 AAAAC chr1 37100338 37100371 trf 4 8.5 4 93 6 59 75 24 0 0 0.80 CAAA chr1 37103649 37103790 trf 12 11.8 12 75 10 83 14 2 32 51 1.54 TGTGTGTGTATA chr1 37103666 37103794 trf 4 32.0 4 79 0 67 14 0 34 50 1.48 GTGT chr1 37103667 37103799 trf 8 16.2 8 73 7 79 15 0 33 50 1.49 TGTGTGTA chr1 37107132 37107285 trf 10 15.7 10 68 14 97 11 0 43 45 1.40 GTGTGTGTGA chr1 37111677 37111755 trf 6 12.7 6 81 5 66 0 53 0 46 1.00 TCTTCC chr1 37111680 37111745 trf 3 21.3 3 84 3 67 0 56 0 43 0.99 TCC chr1 37111995 37112054 trf 7 8.9 7 83 9 79 0 71 0 28 0.87 CCCCTCT chr1 37118446 37118558 trf 4 27.2 4 87 5 134 0 32 0 67 0.91 TCTT chr1 37118732 37118768 trf 4 9.0 4 93 0 63 27 0 0 72 0.85 ATTT chr1 37123758 37123850 trf 5 18.4 5 100 0 184 0 59 0 40 0.97 TCCCT chr1 37127453 37127480 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 37129625 37129668 trf 6 7.2 6 89 10 70 81 18 0 0 0.69 AAACAA chr1 37133802 37133870 trf 10 6.8 10 96 0 118 38 38 10 13 1.78 ATGCACACAC chr1 37136940 37136965 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 37139435 37139496 trf 2 29.5 2 83 6 77 1 49 3 45 1.28 TC chr1 37148767 37148814 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 37150320 37150362 trf 12 3.5 12 86 0 66 26 42 0 30 1.55 CCATCATCATCT chr1 37150930 37151003 trf 9 7.3 10 84 9 80 47 1 19 31 1.58 ATAGATATAG chr1 37151204 37151237 trf 2 16.5 2 93 0 57 51 45 0 3 1.16 AC chr1 37152643 37152679 trf 10 3.6 10 84 0 54 8 2 41 47 1.48 TATGTGTGTG chr1 37153689 37153735 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 37155268 37155318 trf 10 5.2 10 78 9 50 44 44 4 8 1.52 CACACATACA chr1 37155276 37155312 trf 2 18.0 2 88 0 54 47 47 0 5 1.25 CA chr1 37155401 37155449 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 37156713 37156793 trf 12 6.8 12 79 16 96 41 40 10 8 1.70 CACATGCACACA chr1 37156721 37156759 trf 10 3.6 10 86 13 58 39 42 10 7 1.69 CACACACATG chr1 37158791 37158839 trf 4 12.0 4 100 0 96 25 0 0 75 0.81 ATTT chr1 37159243 37159358 trf 4 28.2 4 92 3 122 0 34 0 65 0.93 TCTT chr1 37159295 37159340 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 37162694 37162753 trf 5 11.8 5 79 0 64 27 0 69 3 1.04 GGGAG chr1 37166905 37166962 trf 2 28.5 2 100 0 114 0 0 49 50 1.00 TG chr1 37166961 37167007 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 TA chr1 37173140 37173178 trf 4 9.5 4 100 0 76 50 0 23 26 1.50 ATAG chr1 37173616 37173663 trf 4 11.8 4 90 0 58 42 6 25 25 1.78 AATG chr1 37174930 37175024 trf 4 23.5 4 93 0 161 0 52 0 47 1.00 TTCC chr1 37177653 37177701 trf 2 24.0 2 91 0 78 2 45 0 52 1.12 CT chr1 37178428 37178479 trf 2 25.5 2 95 0 93 1 0 49 49 1.12 GT chr1 37178674 37178726 trf 11 4.6 11 75 13 52 7 1 44 46 1.43 GTGTGTGTATG chr1 37184763 37184829 trf 4 16.5 4 96 0 114 50 3 21 25 1.63 ATAG chr1 37187634 37187665 trf 7 4.4 7 100 0 62 0 70 0 29 0.87 CTCCCCT chr1 37194910 37194947 trf 2 18.5 2 88 0 56 45 48 2 2 1.30 CA chr1 37195829 37195889 trf 5 11.4 5 80 16 68 25 0 75 0 0.81 GGAGG chr1 37196539 37196567 trf 4 7.0 4 100 0 56 0 0 25 75 0.81 GTTT chr1 37196734 37196788 trf 4 12.5 4 94 2 63 68 0 31 0 0.90 AAAG chr1 37196742 37196804 trf 5 13.4 5 93 3 80 62 1 35 0 1.05 AGAGA chr1 37204169 37204212 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 37204682 37204707 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 37208484 37208517 trf 6 5.5 6 100 0 66 0 0 15 84 0.61 TTTGTT chr1 37211779 37211807 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 37214163 37214211 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 37217140 37217380 trf 3 79.0 3 68 15 75 2 55 0 42 1.11 TCC chr1 37219332 37219382 trf 5 10.0 5 100 0 100 0 0 20 80 0.72 GTTTT chr1 37220973 37221005 trf 2 16.0 2 93 0 55 50 3 0 46 1.17 AT chr1 37221091 37221134 trf 4 10.8 4 100 0 86 23 51 0 25 1.49 TCCA chr1 37222874 37222919 trf 3 15.0 3 100 0 90 0 0 66 33 0.92 TGG chr1 37226209 37226256 trf 3 15.7 3 90 0 58 42 0 57 0 0.98 AGG chr1 37227933 37228042 trf 3 36.3 3 98 0 209 0 33 0 66 0.92 CTT chr1 37229213 37229334 trf 3 40.3 3 98 0 233 0 33 0 66 0.92 TCT chr1 37232620 37233193 trf 12 50.2 12 78 15 591 34 40 9 15 1.79 ACAGTCACATCC chr1 37239662 37239712 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 37239876 37239933 trf 2 28.5 2 92 0 96 49 47 1 1 1.22 AC chr1 37240471 37240499 trf 10 2.8 10 100 0 56 0 39 0 60 0.97 CTCTCTTTCT chr1 37242246 37242279 trf 10 3.3 10 91 0 57 42 24 18 15 1.88 ACACAGTGAT chr1 37242968 37243107 trf 2 70.0 2 68 9 79 8 4 42 44 1.55 TG chr1 37243356 37243471 trf 9 11.9 10 71 19 52 14 3 34 46 1.62 TGTGTGTGTA chr1 37243420 37243471 trf 10 4.9 10 77 15 50 17 1 33 47 1.59 TATGTGTGTA chr1 37248464 37248509 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 37249167 37249241 trf 4 18.5 4 100 0 148 0 24 0 75 0.80 TTTC chr1 37249238 37249282 trf 4 11.0 4 100 0 88 0 50 0 50 1.00 CTTC chr1 37250156 37250214 trf 5 11.6 5 98 0 98 43 0 56 0 0.99 AGGAG chr1 37250177 37250265 trf 7 12.3 7 75 4 86 34 0 63 2 1.07 GGAGAGG chr1 37251437 37251586 trf 9 16.4 9 71 16 94 0 52 0 47 1.00 CTTCCTCCT chr1 37251439 37251583 trf 6 23.8 6 68 9 60 0 52 0 47 1.00 TCCTCC chr1 37256763 37256823 trf 2 29.5 2 96 3 111 50 48 1 0 1.11 AC chr1 37257177 37257390 trf 4 54.2 4 94 3 281 0 31 0 68 0.90 TCTT chr1 37259200 37259242 trf 5 8.8 5 94 5 70 78 21 0 0 0.75 CAAAA chr1 37263085 37263125 trf 5 8.0 5 100 0 80 0 0 20 80 0.72 GTTTT chr1 37269749 37269807 trf 2 29.0 2 100 0 116 50 50 0 0 1.00 AC chr1 37276287 37276369 trf 2 41.0 2 95 0 146 50 0 50 0 1.00 GA chr1 37276564 37276602 trf 5 7.6 5 82 11 51 0 2 18 78 0.86 TTTGT chr1 37284994 37285040 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 GT chr1 37286343 37286401 trf 2 29.0 2 82 0 71 44 46 0 8 1.34 CA chr1 37288150 37288189 trf 7 5.6 7 90 0 51 0 82 10 7 0.86 CCCCTCG chr1 37289400 37289442 trf 3 14.7 3 80 9 52 69 26 2 2 1.13 AAC chr1 37296901 37296927 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 37308689 37308735 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 CT chr1 37308737 37308791 trf 2 27.5 2 96 3 101 48 51 0 0 1.00 CA chr1 37309931 37309975 trf 2 22.0 2 90 0 70 2 0 45 52 1.13 GT chr1 37317280 37317317 trf 12 3.3 12 78 21 53 8 35 16 40 1.78 CTGCTTCAGTTC chr1 37319289 37319534 trf 2 122.5 2 74 0 121 4 12 46 37 1.61 GT chr1 37320434 37320460 trf 5 5.2 5 100 0 52 57 42 0 0 0.98 CCAAA chr1 37321571 37321606 trf 12 2.9 12 91 0 52 5 0 40 54 1.24 TGTATGTGTGTG chr1 37325738 37325769 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 37329269 37329308 trf 2 19.5 2 94 0 69 2 0 48 48 1.15 GT chr1 37330371 37330438 trf 2 33.5 2 90 0 98 0 56 0 43 0.99 CT chr1 37335674 37335726 trf 2 26.0 2 96 0 95 1 0 48 50 1.12 GT chr1 37340297 37340322 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 37343364 37343389 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 37345311 37345360 trf 12 4.1 12 94 0 71 32 24 42 0 1.55 AGGCAGGCAGAC chr1 37345311 37345353 trf 4 10.5 4 94 0 75 28 23 47 0 1.52 AGGC chr1 37345357 37345405 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 AC chr1 37352669 37352701 trf 2 16.0 2 93 0 55 3 0 46 50 1.17 TG chr1 37352740 37352793 trf 10 5.1 10 77 8 52 11 7 39 41 1.69 GCATGTGTGT chr1 37352889 37352914 trf 12 2.1 12 100 0 50 16 76 0 8 1.02 CCCTCACCCCCA chr1 37358295 37358339 trf 6 7.8 6 92 5 58 0 0 18 81 0.68 TTTTTG chr1 37358296 37358338 trf 11 3.9 10 87 12 57 0 0 19 80 0.70 TTTTGTTTTG chr1 37358296 37358338 trf 5 7.8 5 92 7 57 0 0 19 80 0.70 TTTTG chr1 37360299 37360347 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 CT chr1 37360346 37360386 trf 2 20.0 2 94 0 71 2 0 47 50 1.14 TG chr1 37360782 37360859 trf 12 6.2 12 84 6 91 42 2 54 0 1.14 GAGGAGGAAGAG chr1 37360782 37360859 trf 3 24.7 3 79 7 64 42 2 54 0 1.14 GAG chr1 37362609 37362664 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 37392265 37392338 trf 2 36.5 2 88 0 110 0 46 0 53 1.00 TC chr1 37402121 37402151 trf 4 7.5 4 100 0 60 23 50 26 0 1.50 GCAC chr1 37409527 37409619 trf 1 92.0 1 78 0 85 0 1 10 88 0.58 T chr1 37411214 37411269 trf 2 27.5 2 92 0 92 3 0 47 49 1.19 TG chr1 37411998 37412036 trf 4 9.5 4 100 0 76 76 0 0 23 0.79 AATA chr1 37412072 37412099 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 37413226 37413260 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 37413723 37413777 trf 1 54.0 1 77 0 54 0 9 1 88 0.58 T chr1 37414591 37414640 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 37415182 37415219 trf 8 4.6 8 89 0 56 0 2 16 81 0.81 TTTTTGGT chr1 37417984 37418012 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 37427398 37427432 trf 12 2.8 12 90 0 50 61 0 38 0 0.96 AAGAGAAAGAGG chr1 37444211 37444256 trf 2 22.5 2 90 0 72 44 0 2 53 1.13 TA chr1 37446695 37446723 trf 6 4.7 6 100 0 56 85 14 0 0 0.59 AAAACA chr1 37446746 37446809 trf 4 15.8 4 96 0 117 25 1 73 0 0.93 AGGG chr1 37449965 37450028 trf 2 34.5 2 82 17 84 0 52 0 47 1.00 CT chr1 37450029 37450070 trf 4 10.2 4 100 0 82 26 0 0 73 0.84 ATTT chr1 37453275 37453316 trf 6 7.2 6 86 10 59 53 12 34 0 1.38 AGAGAC chr1 37453334 37453392 trf 3 19.3 3 100 0 116 32 0 67 0 0.91 GGA chr1 37457093 37457170 trf 8 9.9 8 71 5 59 1 38 11 48 1.48 TCTCTCTG chr1 37461463 37461518 trf 2 27.5 2 96 0 101 50 47 0 1 1.11 AC chr1 37466678 37466755 trf 8 9.4 8 80 5 82 11 5 36 46 1.63 TGTATGTG chr1 37466693 37466758 trf 12 5.3 12 79 3 67 12 4 36 46 1.62 TGTGTATGTATG chr1 37470082 37470142 trf 3 20.0 3 89 0 66 28 38 0 33 1.57 ATC chr1 37470715 37470988 trf 8 34.1 8 80 0 132 50 33 0 15 1.48 CACACACA chr1 37470720 37470979 trf 10 25.7 10 77 10 197 50 32 0 16 1.49 ACACACATAT chr1 37473474 37473500 trf 9 2.9 9 100 0 52 23 23 30 23 1.99 AGTGCTCAG chr1 37473664 37473724 trf 2 30.0 2 93 6 104 1 48 0 50 1.11 TC chr1 37473723 37473770 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 37474639 37474685 trf 5 9.8 5 86 9 62 84 15 0 0 0.62 AAAAC chr1 37475577 37475630 trf 2 26.5 2 92 0 88 49 47 1 1 1.23 AC chr1 37475719 37475761 trf 2 21.5 2 85 4 59 50 4 45 0 1.23 AG chr1 37475724 37475759 trf 12 2.9 12 100 0 70 51 5 42 0 1.25 AGAGAGAGAGAC chr1 37476735 37476794 trf 11 5.4 11 91 0 100 3 44 18 33 1.67 TGGCCCCTTTC chr1 37488981 37489022 trf 6 6.8 6 97 0 64 0 12 48 39 1.41 TGTGCG chr1 37493917 37493947 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 37494486 37494521 trf 8 4.4 8 88 0 52 45 14 17 22 1.84 AACATAGT chr1 37504359 37504418 trf 12 5.0 12 77 6 50 42 0 57 0 0.98 AGGAAGAGGAGG chr1 37506024 37506131 trf 4 26.8 4 94 0 133 0 56 1 41 1.17 CTCT chr1 37511208 37511250 trf 3 14.0 3 94 0 75 33 2 0 64 1.07 TTA chr1 37513375 37513411 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 37514316 37514352 trf 5 6.8 5 93 6 54 41 38 16 2 1.63 CACAG chr1 37515236 37515291 trf 4 13.8 4 100 0 110 49 0 50 0 1.00 GGAA chr1 37515289 37515337 trf 2 24.0 2 100 0 96 50 0 50 0 1.00 GA chr1 37515669 37515703 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 37521022 37521146 trf 12 9.9 12 72 8 68 51 32 12 3 1.56 ACAGACACACAG chr1 37521040 37521150 trf 10 11.1 10 72 13 66 51 32 12 2 1.54 ACACACACAG chr1 37522113 37522144 trf 4 7.8 4 100 0 62 51 22 0 25 1.48 ATAC chr1 37522141 37522183 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 37523818 37524098 trf 4 70.0 4 85 0 254 0 11 38 50 1.43 GTGT chr1 37525222 37525258 trf 10 3.6 10 100 0 72 0 52 27 19 1.46 GCCTCCCGTG chr1 37526480 37526513 trf 2 16.5 2 100 0 66 0 51 0 48 1.00 CT chr1 37526806 37526897 trf 7 13.3 7 96 3 168 72 0 27 0 0.85 AAAGAAG chr1 37526945 37526980 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 37528601 37528633 trf 6 5.2 6 96 3 55 0 65 0 34 0.93 CTCTCC chr1 37529972 37530020 trf 2 24.0 2 95 0 87 47 2 50 0 1.12 GA chr1 37530076 37530176 trf 2 50.0 2 95 0 182 48 50 0 2 1.12 AC chr1 37530618 37530662 trf 2 22.0 2 95 0 79 50 47 2 0 1.13 CA chr1 37532320 37532349 trf 4 7.2 4 100 0 58 75 0 0 24 0.80 ATAA chr1 37536580 37536606 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 37537844 37537876 trf 6 5.3 6 92 0 55 3 50 15 31 1.60 TCTGCC chr1 37539123 37539172 trf 2 24.5 2 100 0 98 51 0 48 0 1.00 AG chr1 37540600 37540655 trf 8 6.9 8 82 0 65 16 63 9 10 1.51 CCTCCAGC chr1 37546432 37546494 trf 6 10.3 6 85 0 79 35 3 61 0 1.12 AGAGGG chr1 37550966 37550992 trf 2 13.0 2 100 0 52 0 50 0 50 1.00 TC chr1 37550991 37551036 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 37551704 37551729 trf 7 3.6 7 100 0 50 12 28 44 16 1.83 CTGGAGC chr1 37553060 37553101 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 37553100 37553239 trf 6 23.2 6 93 0 107 49 13 36 0 1.42 GAGAGA chr1 37554432 37554572 trf 10 14.0 10 77 5 95 10 3 40 46 1.55 ATGTGTGTGT chr1 37554433 37554573 trf 6 23.3 6 78 2 102 9 3 40 46 1.53 TGTGTG chr1 37554460 37554572 trf 10 10.6 10 78 11 107 10 0 39 49 1.44 GTGTGTATGT chr1 37560042 37560095 trf 10 5.7 10 74 17 60 37 20 13 28 1.90 ACATACATGT chr1 37560901 37560951 trf 2 25.5 2 80 11 59 2 48 0 50 1.12 CT chr1 37560960 37561025 trf 2 32.5 2 96 0 121 49 49 0 1 1.10 CA chr1 37564828 37564992 trf 4 41.2 4 88 1 123 51 11 12 24 1.73 AGAT chr1 37564830 37564992 trf 12 13.6 12 84 1 146 51 11 12 24 1.73 ATAGATAGATAC chr1 37566006 37566039 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 37566405 37566468 trf 2 31.5 2 100 0 126 50 0 49 0 1.00 AG chr1 37567439 37567626 trf 2 93.5 2 94 0 329 50 47 0 2 1.15 AC chr1 37569226 37569257 trf 7 4.3 7 95 4 53 83 16 0 0 0.64 AAAAACA chr1 37569228 37569261 trf 4 8.8 4 87 12 52 81 18 0 0 0.68 AAAC chr1 37572365 37572393 trf 4 7.0 4 100 0 56 0 75 0 25 0.81 CTCC chr1 37576939 37576974 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 37576973 37577026 trf 2 26.5 2 96 0 97 52 47 0 0 1.00 AC chr1 37577674 37577727 trf 2 27.0 2 96 3 99 49 50 0 0 1.00 CA chr1 37581739 37581769 trf 12 2.5 12 94 0 51 40 50 0 10 1.36 CACACACACACT chr1 37584702 37584976 trf 6 45.5 6 66 16 77 12 5 32 48 1.64 TGTATG chr1 37584794 37584987 trf 10 18.6 10 67 15 81 11 4 33 49 1.60 TGTGTGTGTA chr1 37584796 37585079 trf 8 34.0 8 65 19 73 13 5 31 49 1.65 TGTGTGTA chr1 37585035 37585078 trf 12 3.4 12 81 12 50 13 2 32 51 1.54 TGTGTGTATATG chr1 37587463 37587488 trf 4 6.2 4 100 0 50 76 0 0 24 0.80 ATAA chr1 37590518 37590603 trf 2 48.0 2 69 23 57 47 1 51 0 1.08 GA chr1 37594136 37594166 trf 2 15.0 2 92 0 51 46 50 3 0 1.18 CA chr1 37595779 37595861 trf 4 20.0 4 85 9 112 0 24 25 50 1.50 CTGT chr1 37597066 37597127 trf 2 31.5 2 80 12 74 45 0 52 1 1.10 AG chr1 37597864 37597891 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 37599596 37599647 trf 2 25.5 2 100 0 102 49 0 50 0 1.00 GA chr1 37601426 37601519 trf 12 7.9 12 89 7 111 1 53 0 45 1.07 TCTCTCTCCCTC chr1 37601426 37601494 trf 2 34.0 2 96 0 127 0 51 0 48 1.00 TC chr1 37603709 37603742 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 37619754 37619790 trf 11 3.2 11 84 7 54 16 44 16 22 1.86 ACCTCTGCCTG chr1 37621122 37621164 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 37621993 37622056 trf 2 30.5 2 90 6 99 46 49 4 0 1.23 CA chr1 37626469 37626494 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 37635480 37635521 trf 5 8.8 5 84 10 52 0 0 17 82 0.66 TTTTG chr1 37635699 37635755 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 37635754 37635801 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 37642040 37642102 trf 12 5.0 11 80 18 52 25 0 1 72 0.94 TTATTTTTTAT chr1 37642065 37642100 trf 4 8.8 4 100 0 70 25 0 0 74 0.82 ATTT chr1 37642662 37642702 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 37645783 37645855 trf 9 8.4 9 82 10 80 33 48 0 18 1.48 CCATCATCA chr1 37645795 37645855 trf 6 10.5 6 78 10 54 33 48 0 18 1.48 CATCAC chr1 37646430 37646471 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 37646470 37646508 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 37648365 37648395 trf 4 7.5 4 100 0 60 23 0 0 76 0.78 TTAT chr1 37655478 37655538 trf 2 30.5 2 86 3 86 45 0 55 0 0.99 AG chr1 37661935 37662008 trf 6 12.2 6 100 0 146 32 0 17 49 1.47 GTATAT chr1 37662014 37662058 trf 2 22.0 2 90 0 70 50 45 0 4 1.22 AC chr1 37663283 37663319 trf 4 9.0 4 93 0 63 50 0 22 27 1.50 TGAA chr1 37663984 37664022 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 37667747 37667803 trf 4 14.0 4 88 0 58 1 39 8 50 1.44 TCTC chr1 37667813 37667844 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 37669488 37669531 trf 2 21.5 2 85 0 59 48 46 2 2 1.27 CA chr1 37669643 37669824 trf 3 61.0 3 68 8 75 38 1 56 2 1.23 GAG chr1 37671975 37672017 trf 4 10.5 4 100 0 84 23 0 0 76 0.79 TTAT chr1 37675059 37675265 trf 12 16.5 12 67 20 93 43 38 6 12 1.67 CACACACACATG chr1 37680773 37680828 trf 8 7.0 8 89 4 67 81 16 1 0 0.77 CAAAAAAA chr1 37680773 37680839 trf 12 5.5 12 85 5 71 80 15 1 3 0.91 CAAAAAAACAAA chr1 37680773 37680824 trf 4 13.0 4 85 4 59 80 17 1 0 0.81 CAAA chr1 37686559 37686599 trf 3 13.3 3 100 0 80 67 0 0 32 0.91 ATA chr1 37688920 37688962 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 37689038 37689067 trf 6 4.8 6 100 0 58 0 0 17 82 0.66 TTTTGT chr1 37692433 37692467 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 37698246 37698301 trf 2 27.5 2 100 0 110 49 50 0 0 1.00 CA chr1 37701335 37701369 trf 4 8.8 4 87 6 52 79 17 2 0 0.86 AAAC chr1 37705160 37705208 trf 11 4.5 11 80 14 57 60 0 4 35 1.16 TAATATAATAA chr1 37709077 37709109 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 37713379 37713469 trf 4 22.8 4 84 6 103 26 6 23 43 1.78 ATGT chr1 37718833 37718880 trf 5 9.6 5 78 21 55 80 19 0 0 0.70 AAAAC chr1 37720330 37720355 trf 1 25.0 1 100 0 50 0 100 0 0 0.00 C chr1 37723420 37723448 trf 1 28.0 1 100 0 56 0 100 0 0 0.00 C chr1 37728011 37728051 trf 2 20.5 2 89 5 64 55 45 0 0 0.99 AC chr1 37729053 37729128 trf 4 18.0 4 93 4 114 0 25 1 73 0.91 CTTT chr1 37730428 37730511 trf 12 6.9 12 80 14 91 0 71 1 27 0.94 TCTCCCCTCCCC chr1 37730432 37730511 trf 10 7.5 10 79 10 61 0 72 1 26 0.93 CTCCCCTCCT chr1 37731985 37732017 trf 4 8.0 4 100 0 64 50 0 25 25 1.50 ATAG chr1 37734491 37734575 trf 12 7.3 12 68 10 68 14 14 35 35 1.86 TGTGCATGCATG chr1 37734582 37734616 trf 6 5.7 6 96 0 59 50 11 38 0 1.39 GAGACA chr1 37735436 37735467 trf 8 3.9 8 91 0 53 3 9 22 64 1.38 TGTTTGTC chr1 37736470 37736498 trf 5 5.6 5 100 0 56 82 17 0 0 0.68 AAAAC chr1 37737058 37737149 trf 5 18.6 5 91 7 127 82 0 17 0 0.67 AAAAG chr1 37738207 37738254 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 37742143 37742201 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 AT chr1 37743518 37743563 trf 2 22.5 2 86 0 63 0 42 6 51 1.28 TC chr1 37744236 37744395 trf 12 13.2 12 71 15 96 42 0 55 0 1.08 AGGAAGAGGAGG chr1 37744288 37744395 trf 3 36.3 3 69 10 69 41 0 58 0 0.98 GAG chr1 37758613 37758650 trf 4 9.2 4 100 0 74 0 0 24 75 0.80 TGTT chr1 37761668 37761925 trf 2 134.0 2 65 16 98 9 2 42 45 1.50 TG chr1 37785697 37785741 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 37786297 37786353 trf 8 6.1 9 74 17 53 1 14 0 83 0.72 TCTTTTTTT chr1 37794901 37794990 trf 3 29.7 3 97 0 169 0 32 0 67 0.91 CTT chr1 37794987 37795035 trf 2 24.0 2 86 0 69 0 56 0 43 0.99 TC chr1 37794988 37795085 trf 8 12.1 8 94 0 122 0 64 0 35 0.93 CTCTCTCC chr1 37795008 37795085 trf 4 19.2 4 86 0 109 0 68 0 31 0.90 CTCC chr1 37795094 37795144 trf 2 25.0 2 95 0 91 0 2 50 48 1.12 TG chr1 37799371 37799454 trf 2 41.5 2 97 0 157 0 50 0 49 1.00 TC chr1 37800662 37800705 trf 4 10.8 4 94 0 77 48 25 2 23 1.62 ACAT chr1 37800924 37800988 trf 2 32.0 2 87 6 94 51 45 1 1 1.20 AC chr1 37802642 37802669 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 37804171 37804212 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 37808327 37808482 trf 3 49.7 3 91 7 231 0 30 0 69 0.89 TTC chr1 37808429 37808467 trf 4 10.2 4 83 16 55 0 26 0 73 0.83 TTCT chr1 37811638 37811692 trf 5 10.8 5 97 0 99 61 1 0 37 1.07 AATAT chr1 37817947 37818016 trf 2 34.5 2 91 0 111 50 4 0 44 1.21 AT chr1 37820062 37820105 trf 2 21.5 2 95 0 77 51 46 2 0 1.13 AC chr1 37829387 37829419 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 37835742 37835780 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 37839866 37839908 trf 7 5.9 7 84 15 59 0 0 14 85 0.59 TTTTTTG chr1 37839868 37839906 trf 5 7.8 5 88 11 53 0 0 15 84 0.63 TTTTG chr1 37841638 37841670 trf 4 8.0 4 100 0 64 50 25 0 25 1.50 ATAC chr1 37846760 37846809 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 37851505 37851533 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 37853200 37853265 trf 2 32.5 2 87 0 94 49 46 1 3 1.27 CA chr1 37866973 37867049 trf 10 7.9 10 75 8 59 32 0 67 0 0.91 AGGGGAAGGG chr1 37867051 37867104 trf 5 10.6 5 95 0 88 58 0 41 0 0.98 AAAGG chr1 37867567 37867601 trf 4 8.5 4 100 0 68 26 0 23 50 1.50 ATGT chr1 37867646 37867671 trf 2 12.5 2 100 0 50 52 0 48 0 1.00 AG chr1 37870793 37870824 trf 4 7.8 4 100 0 62 51 25 0 22 1.48 ACAT chr1 37871378 37871424 trf 5 9.4 5 83 7 51 78 19 2 0 0.86 AAAAC chr1 37880321 37880359 trf 6 6.3 6 100 0 76 50 15 0 34 1.45 TATACA chr1 37885818 37885849 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 37889092 37889119 trf 4 6.8 4 100 0 54 51 0 22 25 1.48 ATAG chr1 37901447 37901481 trf 4 8.5 4 100 0 68 26 0 0 73 0.83 ATTT chr1 37901817 37901874 trf 2 28.5 2 96 0 105 0 1 49 49 1.11 TG chr1 37907875 37907956 trf 4 20.2 4 92 0 126 22 48 3 25 1.67 ATCC chr1 37911258 37911295 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 37913145 37913187 trf 7 6.3 7 86 13 54 83 14 2 0 0.75 CAAAAAA chr1 37913147 37913181 trf 6 5.7 6 93 6 52 88 11 0 0 0.52 AAAAAC chr1 37914127 37914370 trf 6 39.8 6 81 7 152 0 48 0 51 1.03 CTCCTT chr1 37914187 37914378 trf 9 21.1 9 85 6 63 0 48 0 50 1.04 CTCCTCTTC chr1 37914294 37914365 trf 3 23.7 3 97 0 133 0 35 0 64 0.94 TCT chr1 37914683 37914753 trf 4 17.5 4 90 0 113 0 45 0 54 0.99 CTTC chr1 37915564 37915589 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 37921403 37921438 trf 4 8.8 4 100 0 70 22 0 0 77 0.78 TTTA chr1 37923761 37923808 trf 5 9.6 5 84 13 62 78 19 0 2 0.85 AAACA chr1 37930005 37930030 trf 12 2.1 12 100 0 50 60 0 40 0 0.97 AGAAAGAGAGAG chr1 37930599 37930637 trf 12 3.5 11 82 10 51 81 15 2 0 0.80 AAAAACAAAAC chr1 37933851 37933889 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 CT chr1 37933980 37934173 trf 6 32.2 6 100 0 386 0 50 16 33 1.46 CTGCCT chr1 37940318 37940346 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 37944424 37944492 trf 2 34.0 2 96 0 127 51 0 48 0 1.00 GA chr1 37947651 37947707 trf 2 28.5 2 92 3 96 48 1 50 0 1.11 AG chr1 37949374 37949406 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 CT chr1 37949423 37949452 trf 4 7.2 4 100 0 58 0 24 24 51 1.48 TGTC chr1 37953598 37953643 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 37953656 37953697 trf 4 10.5 4 89 5 66 0 73 0 26 0.84 TCCC chr1 37958156 37958246 trf 8 10.8 8 75 15 60 40 0 60 0 0.97 GAGAGGGA chr1 37958183 37958268 trf 10 8.7 10 82 7 95 40 0 60 0 0.97 GAGGAAGGGA chr1 37960048 37960155 trf 5 21.6 5 85 9 85 35 0 64 0 0.94 GAGAG chr1 37960089 37960207 trf 5 23.4 5 82 5 112 27 0 68 2 1.08 GAGGG chr1 37960912 37961351 trf 5 89.8 5 82 5 459 34 2 62 0 1.08 GAGGA chr1 37960912 37961147 trf 7 31.6 7 76 11 218 30 0 69 0 0.89 GAGGGGA chr1 37964931 37964984 trf 2 27.0 2 84 3 63 49 5 1 43 1.37 AT chr1 37966336 37966403 trf 2 33.5 2 87 0 89 0 5 49 44 1.27 GT chr1 37966863 37966967 trf 12 9.3 12 97 2 152 0 45 0 54 0.99 TCTTCCTCTTCC chr1 37967170 37967205 trf 5 6.8 5 96 3 61 0 0 17 82 0.66 TTTTG chr1 37968414 37968454 trf 4 10.0 4 100 0 80 75 0 0 25 0.81 ATAA chr1 37972726 37972765 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 37978873 37978928 trf 2 29.0 2 89 10 89 0 52 0 47 1.00 TC chr1 37980961 37981028 trf 4 16.8 4 100 0 134 25 23 0 50 1.49 TATC chr1 37981410 37981454 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 37981619 37981703 trf 3 30.3 3 84 15 119 0 29 0 70 0.88 TTC chr1 37981700 37981734 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 TC chr1 37990998 37991045 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 38000531 38000561 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 38003855 38003883 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 38016925 38016951 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 38029161 38029222 trf 4 15.2 4 100 0 122 50 0 24 24 1.49 AGAT chr1 38030425 38030465 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 38036030 38036059 trf 12 2.4 12 100 0 58 55 0 44 0 0.99 GAGGAAGAAGAA chr1 38041022 38041047 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 38042095 38042176 trf 2 40.5 2 89 0 117 0 6 49 44 1.27 TG chr1 38044587 38044619 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 38050757 38050782 trf 11 2.3 11 100 0 50 16 20 8 56 1.65 TCTAGTACTTT chr1 38060589 38060616 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 38065400 38065432 trf 10 3.3 10 95 4 57 93 0 6 0 0.34 AAAAAGAAAA chr1 38072183 38072217 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 38086574 38086604 trf 8 3.8 8 90 0 51 86 13 0 0 0.57 AAAAAAAC chr1 38089885 38089914 trf 4 7.2 4 100 0 58 0 48 27 24 1.51 GCCT chr1 38090121 38090170 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 38090169 38090204 trf 2 17.5 2 100 0 70 48 0 0 51 1.00 TA chr1 38091885 38091923 trf 12 3.0 13 92 7 69 23 7 21 47 1.77 GGGTTCATTTATA chr1 38097742 38097782 trf 8 4.9 8 84 6 53 85 2 12 0 0.71 AAAAAAGA chr1 38102050 38102087 trf 6 6.2 6 96 0 65 0 35 13 51 1.41 TGTCTC chr1 38102260 38102285 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 38102797 38102853 trf 4 14.0 4 96 0 94 53 25 0 21 1.46 CATA chr1 38108698 38108730 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 38112152 38112178 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 38112177 38112202 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 38113558 38113601 trf 11 4.2 10 80 13 52 88 0 11 0 0.52 AAAAAAAAGA chr1 38120165 38120199 trf 4 8.5 4 100 0 68 76 0 23 0 0.79 AAGA chr1 38129974 38130009 trf 5 7.0 5 86 0 52 0 74 22 2 0.95 CGCCC chr1 38134359 38134400 trf 7 5.6 7 86 11 55 2 0 17 80 0.82 TTTTGTT chr1 38135998 38136029 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 38136504 38136538 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 38136609 38136648 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 38140133 38140164 trf 4 7.5 4 92 7 53 70 29 0 0 0.87 ACAA chr1 38140739 38140809 trf 2 35.0 2 91 0 113 50 45 4 0 1.21 AC chr1 38141318 38141360 trf 2 21.0 2 85 0 57 50 42 0 7 1.30 AC chr1 38142148 38142222 trf 3 24.7 3 94 0 130 36 0 63 0 0.95 GAG chr1 38147642 38147694 trf 2 26.0 2 80 0 59 48 42 5 3 1.45 CA chr1 38149491 38149616 trf 10 12.5 10 84 0 124 48 9 40 1 1.46 GAGAGAGAGA chr1 38149491 38149616 trf 6 20.8 6 86 0 124 48 9 40 1 1.46 GAGAGA chr1 38149580 38149625 trf 10 4.5 10 97 0 81 44 8 40 6 1.62 AGAGAGTCAG chr1 38149628 38149700 trf 4 18.0 4 94 0 126 47 0 52 0 1.00 GAAG chr1 38149872 38149898 trf 3 8.7 3 100 0 52 69 30 0 0 0.89 AAC chr1 38149935 38149962 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 38151040 38151065 trf 12 2.1 12 100 0 50 16 36 40 8 1.77 CACGGGGCAGCT chr1 38155940 38155988 trf 2 24.0 2 91 0 69 0 52 0 47 1.00 TC chr1 38159951 38159993 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 TG chr1 38169002 38169097 trf 10 9.5 10 98 0 172 50 42 7 0 1.30 ACACAGACAC chr1 38170301 38170372 trf 6 12.0 6 81 3 90 77 0 21 1 0.85 AGAAAA chr1 38174854 38174884 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 38175163 38175211 trf 4 12.0 4 95 0 87 50 2 47 0 1.12 GAAG chr1 38180017 38180042 trf 10 2.5 10 100 0 50 20 8 64 8 1.46 GGGAGCAGTG chr1 38182230 38182269 trf 3 13.0 3 100 0 78 66 33 0 0 0.92 AAC chr1 38184489 38184660 trf 8 21.6 8 70 11 93 11 4 32 51 1.57 TGTGTATG chr1 38184495 38184644 trf 10 15.3 10 75 5 108 12 3 32 51 1.56 TGTGTATGTG chr1 38184597 38184665 trf 10 7.2 10 73 15 56 10 5 36 47 1.62 TGTGTGTGCA chr1 38188473 38188760 trf 8 35.4 8 68 12 93 46 39 3 11 1.56 ACACACAT chr1 38188579 38188701 trf 2 62.0 2 79 6 106 49 40 1 8 1.42 CA chr1 38188697 38188842 trf 10 15.4 10 73 14 121 38 34 11 15 1.83 CACATACATG chr1 38191427 38191480 trf 12 4.4 12 100 0 106 32 0 67 0 0.91 GGAGGAAGGGGA chr1 38194783 38194817 trf 3 11.3 3 93 0 59 64 0 2 32 1.08 AAT chr1 38204674 38204708 trf 12 2.8 12 86 0 50 0 35 14 50 1.44 TGTCTCTCTCTC chr1 38211059 38211095 trf 2 18.0 2 94 0 63 0 47 0 52 1.00 TC chr1 38213310 38213340 trf 5 6.0 5 100 0 60 20 0 0 80 0.72 TTTTA chr1 38220115 38220182 trf 2 33.0 2 93 3 116 47 49 2 0 1.16 AC chr1 38220854 38221059 trf 12 17.4 12 66 7 53 44 35 10 9 1.71 ACACAGACACAC chr1 38221009 38221079 trf 2 35.0 2 77 0 59 45 41 10 2 1.52 CA chr1 38227257 38227296 trf 4 9.8 4 88 0 60 25 43 0 30 1.55 ATCC chr1 38229369 38229396 trf 5 5.4 5 100 0 54 22 0 0 77 0.76 TATTT chr1 38236395 38236443 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 38236442 38236489 trf 2 23.5 2 100 0 94 51 0 48 0 1.00 AG chr1 38238831 38238862 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 38239621 38239671 trf 12 4.2 12 97 0 91 26 44 30 0 1.55 ACGCAGGCACGC chr1 38239621 38239671 trf 4 12.5 4 86 0 73 26 44 30 0 1.55 ACGC chr1 38240128 38240169 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 38243795 38243829 trf 2 17.5 2 93 6 61 0 0 50 50 1.00 TG chr1 38246249 38246413 trf 4 41.0 4 73 9 104 26 22 7 42 1.81 CATT chr1 38248671 38248700 trf 5 5.8 5 100 0 58 62 17 0 20 1.33 AAATC chr1 38249221 38249262 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 38251886 38251935 trf 12 4.1 12 78 0 53 0 38 10 51 1.36 TGTCTCTTTCTC chr1 38251935 38252049 trf 6 19.0 6 87 0 129 48 42 7 1 1.42 CACACA chr1 38257006 38257191 trf 6 31.0 6 70 18 84 29 0 67 2 1.08 GGAGGA chr1 38259327 38259420 trf 2 46.0 2 95 2 168 49 48 0 2 1.13 AC chr1 38269056 38269425 trf 3 124.3 3 82 4 284 39 0 59 0 1.06 AGG chr1 38273373 38273410 trf 2 19.0 2 88 5 58 45 51 2 0 1.15 AC chr1 38279717 38279782 trf 6 10.7 6 81 3 76 18 6 75 0 1.00 GGGGAG chr1 38287850 38287893 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 38289190 38289228 trf 4 9.5 4 100 0 76 76 23 0 0 0.79 AAAC chr1 38296364 38296406 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 AG chr1 38296708 38296759 trf 10 5.3 10 83 9 70 52 9 35 1 1.46 AGAGAGACAG chr1 38303493 38303532 trf 10 3.9 10 82 0 51 20 10 2 66 1.33 TATTTCATTT chr1 38305243 38305295 trf 2 26.0 2 100 0 104 0 50 0 50 1.00 TC chr1 38305292 38305353 trf 4 15.8 4 93 6 108 0 73 0 26 0.83 CTCC chr1 38320166 38320191 trf 11 2.3 11 100 0 50 92 8 0 0 0.40 AAAAAAACAAA chr1 38320318 38320343 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 38322710 38322745 trf 2 17.5 2 100 0 70 0 0 51 48 1.00 GT chr1 38322898 38322974 trf 4 19.5 4 89 5 93 26 30 0 43 1.55 ATCT chr1 38326384 38326421 trf 12 2.9 13 88 8 58 48 0 0 51 1.00 TTTTTAAATAAAA chr1 38331683 38331711 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 38340792 38340831 trf 6 6.5 6 93 0 69 48 15 35 0 1.45 AGAGAC chr1 38346577 38346639 trf 2 31.0 2 86 0 88 3 3 46 46 1.35 TG chr1 38355034 38355088 trf 2 27.0 2 84 0 63 42 48 7 1 1.42 AC chr1 38356812 38356984 trf 5 34.4 5 94 0 74 35 0 60 4 1.16 GGTAG chr1 38357637 38357696 trf 6 9.8 6 75 14 50 47 13 38 0 1.43 AGAGAC chr1 38360224 38360253 trf 4 7.2 4 100 0 58 48 27 0 24 1.51 CATA chr1 38360331 38360360 trf 4 7.2 4 100 0 58 0 24 24 51 1.48 TGTC chr1 38365425 38365452 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 38365689 38365739 trf 4 12.5 4 100 0 100 0 24 0 76 0.80 TTTC chr1 38365736 38365765 trf 4 7.2 4 100 0 58 0 51 0 48 1.00 CTTC chr1 38365762 38365812 trf 4 12.5 4 100 0 100 0 74 0 26 0.83 TCCC chr1 38365810 38365874 trf 4 16.0 4 96 0 119 1 25 0 73 0.92 TCTT chr1 38367072 38367116 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 38375163 38375208 trf 2 22.5 2 86 0 63 42 0 6 51 1.28 TA chr1 38376373 38376406 trf 2 16.5 2 93 0 57 3 0 45 51 1.16 TG chr1 38378207 38378254 trf 12 3.9 12 84 15 62 0 57 0 42 0.98 TCTCTCCTCTCC chr1 38378307 38378348 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 38381263 38381289 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 38382579 38382626 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 38382625 38382667 trf 2 21.0 2 100 0 84 50 0 50 0 1.00 AG chr1 38385200 38385281 trf 4 20.5 4 94 2 146 50 0 49 0 1.00 GGAA chr1 38389104 38389181 trf 4 18.8 4 87 10 93 70 0 29 0 0.88 AAAG chr1 38391208 38391249 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 38393974 38394009 trf 1 35.0 1 88 0 52 94 0 5 0 0.32 A chr1 38397130 38397169 trf 4 9.8 4 94 0 69 25 28 0 46 1.53 CATT chr1 38398377 38398406 trf 3 9.7 3 100 0 58 0 0 31 68 0.89 TTG chr1 38399737 38399769 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 38400425 38400491 trf 3 22.0 3 100 0 132 66 0 33 0 0.92 AAG chr1 38405519 38405558 trf 4 10.0 4 88 5 53 71 0 0 28 0.86 AAAT chr1 38408932 38408984 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 38416712 38416756 trf 12 3.4 13 84 6 54 0 2 22 75 0.92 TGTTTGTTTTGTT chr1 38421273 38421318 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 38422554 38422579 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 38434978 38435038 trf 2 30.5 2 93 3 104 50 1 48 0 1.11 AG chr1 38438195 38438246 trf 12 3.9 12 76 18 57 45 31 9 13 1.76 ACACACATGCAA chr1 38440032 38440065 trf 2 16.5 2 93 0 57 0 51 0 48 1.00 TC chr1 38444124 38444167 trf 4 10.8 4 100 0 86 0 23 0 76 0.78 TTTC chr1 38447998 38448034 trf 11 3.3 11 92 0 63 36 5 8 50 1.56 TTATTACTAGA chr1 38453202 38453227 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 38454007 38454039 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 38454038 38454075 trf 2 18.5 2 94 0 65 51 48 0 0 1.00 CA chr1 38459021 38459051 trf 12 2.5 12 94 0 51 36 6 26 30 1.82 GATGTAGCATAA chr1 38461989 38462036 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 38463736 38463775 trf 3 13.3 3 89 5 62 69 28 0 2 1.02 AAC chr1 38464690 38464727 trf 2 18.5 2 100 0 74 0 0 51 48 1.00 GT chr1 38468481 38468508 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 38479305 38479363 trf 12 4.8 12 77 8 64 37 3 56 1 1.26 GAGGAAGAGGGA chr1 38480993 38481041 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 38488532 38488575 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 38495214 38495256 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 38497438 38497648 trf 9 23.6 9 73 9 153 0 58 0 40 1.04 TCCTCCTCC chr1 38497438 38497648 trf 6 35.3 6 73 9 153 0 58 0 40 1.04 TCCTCC chr1 38500605 38500671 trf 2 33.0 2 81 6 80 46 6 1 45 1.37 AT chr1 38508004 38508056 trf 12 4.4 12 78 4 52 11 67 9 11 1.43 CCCCACCCCTGC chr1 38508497 38508541 trf 5 8.6 5 90 5 70 4 75 0 20 0.98 TCCCC chr1 38513779 38513809 trf 4 7.5 4 92 0 51 50 0 23 26 1.50 GATA chr1 38521005 38521040 trf 4 8.8 4 100 0 70 51 25 22 0 1.48 ACAG chr1 38527380 38527412 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 38528700 38528726 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 38533384 38533425 trf 2 20.5 2 84 0 55 51 41 2 4 1.36 AC chr1 38533429 38533460 trf 4 7.8 4 100 0 62 25 0 74 0 0.82 GAGG chr1 38533457 38533525 trf 2 34.0 2 93 0 118 50 0 50 0 1.00 GA chr1 38535971 38536022 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 38536397 38536452 trf 2 27.5 2 92 0 92 3 0 49 47 1.19 TG chr1 38537328 38537362 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 38541497 38541542 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 38543792 38543845 trf 3 18.0 3 96 3 99 0 0 67 32 0.91 GTG chr1 38543896 38543938 trf 9 4.8 9 79 5 50 9 0 54 35 1.33 TGGTGGTGA chr1 38545275 38545345 trf 2 35.0 2 100 0 140 50 0 50 0 1.00 AG chr1 38554826 38554863 trf 4 9.2 4 93 0 65 51 21 24 2 1.61 ACAG chr1 38555822 38555853 trf 3 10.3 3 92 0 53 64 3 0 32 1.09 TAA chr1 38560195 38560221 trf 12 2.2 12 100 0 52 42 0 57 0 0.98 AGGGAGGGAGAA chr1 38562556 38562582 trf 9 2.9 9 100 0 52 11 57 11 19 1.63 CTGCACCCT chr1 38563917 38563990 trf 2 37.0 2 91 2 121 49 47 0 2 1.15 AC chr1 38566406 38566436 trf 4 7.5 4 100 0 60 26 0 73 0 0.84 AGGG chr1 38570808 38570875 trf 2 33.5 2 90 0 107 49 46 1 2 1.26 CA chr1 38572048 38572095 trf 2 23.5 2 100 0 94 0 0 51 48 1.00 GT chr1 38576973 38577026 trf 3 17.7 3 100 0 106 0 33 0 66 0.92 CTT chr1 38577023 38577079 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 38577905 38577963 trf 4 15.0 4 73 20 52 1 72 0 25 0.94 CCTC chr1 38580903 38580970 trf 4 16.2 4 78 6 53 35 1 14 47 1.54 GTAT chr1 38580903 38580961 trf 8 7.0 8 84 7 80 36 1 13 48 1.53 GTATATAT chr1 38580916 38580970 trf 12 4.3 12 77 9 63 35 1 14 48 1.55 TATGTATATATG chr1 38582097 38582139 trf 11 3.9 11 87 3 50 19 33 23 23 1.97 ATGTGACCCCG chr1 38593313 38593357 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 38593656 38593685 trf 2 15.0 2 92 7 51 48 51 0 0 1.00 CA chr1 38603726 38603758 trf 4 7.8 4 93 6 55 0 0 25 75 0.81 TTTG chr1 38609687 38609789 trf 2 51.0 2 88 0 150 48 46 1 3 1.32 AC chr1 38611379 38611410 trf 2 15.5 2 93 0 53 0 0 45 54 0.99 TG chr1 38618387 38618418 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 38625235 38625268 trf 4 8.2 4 100 0 66 75 0 0 24 0.80 AAAT chr1 38627645 38627687 trf 9 4.6 9 88 5 57 0 66 21 11 1.23 CCCCGCGCT chr1 38630416 38630659 trf 12 19.8 12 79 8 130 54 10 11 23 1.68 AGATAGATACAT chr1 38630416 38630662 trf 4 64.0 4 78 7 107 54 10 12 23 1.68 AGAT chr1 38630418 38630662 trf 8 31.8 8 78 8 148 54 10 11 23 1.68 ATAGATAC chr1 38630662 38630720 trf 2 28.5 2 89 3 89 48 0 48 3 1.18 GA chr1 38637730 38637774 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 38638402 38638446 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 38638998 38639028 trf 3 10.0 3 100 0 60 33 0 0 66 0.92 ATT chr1 38641121 38641149 trf 11 2.5 11 100 0 56 7 7 21 64 1.43 TGTTTGTTTAC chr1 38641539 38641567 trf 6 4.7 6 100 0 56 0 0 85 14 0.59 GGGGTG chr1 38643485 38643520 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 38644157 38644260 trf 10 9.5 12 89 4 77 58 0 41 0 0.98 GAGGAAGAGGAA chr1 38644193 38644262 trf 5 13.8 5 100 0 138 60 0 39 0 0.97 AAAGG chr1 38648863 38648890 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 38650689 38650716 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 38653320 38653866 trf 12 46.4 12 72 13 296 32 51 0 15 1.46 CACCACCATCAT chr1 38653338 38653868 trf 9 61.8 9 67 14 246 32 51 0 16 1.44 CACCATCAT chr1 38656826 38656860 trf 3 11.3 3 93 0 59 35 61 2 0 1.11 ACC chr1 38657000 38657304 trf 4 80.8 4 73 16 213 45 0 26 27 1.59 AGAT chr1 38657012 38657304 trf 7 41.9 7 73 17 145 45 0 27 27 1.57 GATAGAT chr1 38664622 38664672 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 38665315 38665354 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 38667559 38667597 trf 2 19.0 2 88 0 58 2 2 47 47 1.30 TG chr1 38669308 38669344 trf 4 9.0 4 100 0 72 25 50 0 25 1.50 CCTA chr1 38673298 38673411 trf 10 11.3 10 87 0 154 51 42 5 0 1.30 ACACACACAC chr1 38673298 38673411 trf 6 18.8 6 87 0 154 51 42 5 0 1.30 ACACAC chr1 38674359 38674386 trf 1 27.0 1 100 0 54 100 0 0 0 0.00 A chr1 38674840 38674865 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 38682112 38682170 trf 6 10.0 6 81 7 66 50 20 0 29 1.49 ATATAC chr1 38682725 38682764 trf 4 9.8 4 100 0 78 0 48 0 51 1.00 CTTC chr1 38684917 38684957 trf 10 3.8 10 81 12 53 47 30 2 20 1.63 ACACACATAT chr1 38684929 38685070 trf 10 13.9 10 74 5 61 40 29 9 19 1.84 ACACACATGC chr1 38685075 38685170 trf 12 7.1 14 71 15 76 41 28 10 20 1.85 ACATGTGCATACAC chr1 38685141 38685176 trf 12 2.9 12 86 0 52 40 28 11 20 1.87 ACACATATGCAT chr1 38686914 38687021 trf 12 8.9 12 98 0 196 0 43 5 50 1.25 TCTCTCTCTCTG chr1 38686914 38687024 trf 2 55.0 2 88 0 166 0 44 5 50 1.25 TC chr1 38687023 38687070 trf 2 23.5 2 91 0 76 44 51 2 2 1.25 CA chr1 38687590 38687930 trf 2 170.5 2 71 4 103 50 32 9 7 1.62 AC chr1 38687995 38688023 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 38690193 38690250 trf 2 28.5 2 96 0 105 0 1 49 49 1.11 TG chr1 38692345 38692398 trf 2 27.0 2 92 3 90 49 49 0 1 1.12 AC chr1 38693753 38693944 trf 5 38.2 5 98 0 274 0 46 0 53 1.00 TTTCC chr1 38695780 38695833 trf 3 17.7 3 100 0 106 66 0 0 33 0.92 ATA chr1 38701050 38701095 trf 8 5.6 8 94 0 81 51 37 11 0 1.38 ACAGACAC chr1 38701054 38701093 trf 2 19.5 2 83 0 51 51 41 7 0 1.31 AC chr1 38701189 38701225 trf 6 6.0 6 96 0 63 50 36 13 0 1.43 AGACAC chr1 38702706 38702733 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 38703179 38703209 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 38711146 38711203 trf 10 5.8 10 80 17 57 0 0 15 84 0.63 TTTTGTTTGT chr1 38711154 38711245 trf 7 12.9 7 80 16 66 0 0 20 79 0.74 GTTTTTG chr1 38711155 38711247 trf 8 11.8 8 79 9 73 0 0 20 79 0.73 TTTTTGTT chr1 38711178 38711265 trf 8 11.1 8 79 18 94 0 0 22 77 0.78 TTTTTTGG chr1 38711812 38711853 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 38712630 38712701 trf 2 35.5 2 88 0 97 49 43 1 5 1.35 AC chr1 38713910 38713965 trf 12 4.6 12 81 0 56 49 12 38 0 1.41 AGAGAGAGACAC chr1 38713922 38713972 trf 8 6.5 8 77 9 50 50 14 36 0 1.43 AGAGACAG chr1 38713922 38713972 trf 10 5.2 10 80 9 68 50 14 36 0 1.43 AGAGACAGAG chr1 38715589 38715682 trf 10 8.9 10 68 23 50 45 31 3 20 1.67 ATACACACAT chr1 38723593 38723633 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 38733527 38733674 trf 4 36.8 4 97 0 186 67 0 32 0 0.91 AAAG chr1 38738260 38738429 trf 4 42.2 4 88 4 162 65 0 34 0 0.98 AGAA chr1 38749363 38749398 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 38752617 38752648 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 38752801 38752855 trf 7 7.4 7 79 8 63 27 0 72 0 0.85 GAGGGGA chr1 38753569 38753602 trf 10 3.0 11 83 16 50 27 0 72 0 0.85 GGGAGGAGGAG chr1 38753818 38753847 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 AAAC chr1 38755079 38755107 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 38759679 38759807 trf 3 42.7 3 96 0 238 64 0 35 0 0.94 AGA chr1 38759805 38759838 trf 3 11.0 3 100 0 66 33 0 66 0 0.92 AGG chr1 38759832 38759913 trf 4 20.2 4 89 0 108 43 0 56 0 0.99 AGGA chr1 38760312 38760363 trf 4 12.8 4 91 8 86 50 25 23 0 1.49 ACAG chr1 38763998 38764040 trf 4 10.5 4 100 0 84 50 26 0 23 1.50 CATA chr1 38765495 38765610 trf 7 16.4 7 100 0 230 42 13 43 0 1.44 GGAGACA chr1 38766086 38766174 trf 4 22.2 4 92 2 133 0 28 0 71 0.86 TTCT chr1 38766099 38766243 trf 8 17.9 8 90 3 128 0 38 0 61 0.96 CTTCCTTC chr1 38766171 38766243 trf 4 17.8 4 88 8 110 0 45 0 54 0.99 CTTC chr1 38766530 38766580 trf 2 25.0 2 95 0 91 50 48 0 2 1.12 AC chr1 38769510 38769574 trf 2 32.0 2 93 0 101 46 1 3 48 1.27 TA chr1 38769621 38769672 trf 2 25.5 2 95 0 93 1 0 47 50 1.12 TG chr1 38772485 38772551 trf 12 5.5 12 83 0 78 0 39 10 50 1.37 CTCTCTCTGTCT chr1 38772488 38772547 trf 6 9.8 6 90 0 82 0 37 11 50 1.39 TCTCTG chr1 38778587 38778637 trf 3 16.7 3 91 0 82 0 62 2 36 1.07 TCC chr1 38778595 38778646 trf 12 4.2 12 89 0 66 1 60 1 35 1.19 CTCCTCCTACTC chr1 38779438 38779474 trf 12 3.0 12 95 0 63 36 30 16 16 1.91 TGTGCACACACA chr1 38779963 38779988 trf 4 6.2 4 100 0 50 48 28 24 0 1.52 CAGA chr1 38782212 38782249 trf 3 12.3 3 94 0 65 64 0 2 32 1.07 ATA chr1 38783386 38783468 trf 6 13.8 6 87 7 96 29 0 70 0 0.87 AGGAGG chr1 38783466 38783626 trf 3 53.7 3 93 1 277 64 0 35 0 0.98 AGA chr1 38794459 38794579 trf 2 61.5 2 93 4 210 50 0 49 0 1.06 GA chr1 38799381 38799411 trf 6 5.0 6 100 0 60 0 0 83 16 0.65 GGGGGT chr1 38812397 38812432 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 38822757 38822800 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 38824653 38824689 trf 1 36.0 1 94 0 54 94 5 0 0 0.31 A chr1 38824759 38824814 trf 6 9.7 6 75 25 57 83 0 16 0 0.64 AAAAAG chr1 38824765 38824814 trf 12 4.1 12 84 7 64 83 0 16 0 0.64 AAAAGAAAGAAA chr1 38830886 38831271 trf 4 96.8 4 67 14 127 20 1 30 47 1.59 TGTA chr1 38830930 38831272 trf 12 28.7 12 72 11 186 19 1 31 47 1.59 TGTATGTGTGTA chr1 38830992 38831231 trf 6 39.8 6 69 13 109 18 1 31 48 1.56 TATGTG chr1 38838241 38838428 trf 12 15.9 12 70 11 50 48 31 12 8 1.69 ACACAGAGACAT chr1 38838335 38838433 trf 10 9.0 10 73 16 79 51 31 9 8 1.63 AGACACACAT chr1 38840761 38840820 trf 12 4.9 12 80 0 64 8 5 38 47 1.56 TGTGTGTATGTG chr1 38841775 38841814 trf 3 13.0 3 94 0 69 66 2 0 30 1.05 AAT chr1 38842966 38843001 trf 2 17.5 2 100 0 70 51 0 48 0 1.00 AG chr1 38848635 38848693 trf 8 7.4 8 82 3 55 46 13 1 37 1.54 ATATATAC chr1 38849258 38849304 trf 2 23.5 2 95 4 85 50 50 0 0 1.00 AC chr1 38850246 38850278 trf 2 16.0 2 93 0 55 50 46 0 3 1.17 AC chr1 38856897 38856940 trf 5 7.8 6 92 7 58 0 11 0 88 0.52 TTTTTC chr1 38861431 38861469 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 38867028 38867072 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 38868687 38868753 trf 2 33.0 2 96 0 123 48 0 51 0 1.00 GA chr1 38872486 38872526 trf 2 20.0 2 94 0 71 0 47 0 52 1.00 CT chr1 38881323 38881357 trf 10 3.5 10 88 4 52 0 8 0 91 0.43 TTTTTCTTTT chr1 38885828 38885882 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 38886485 38886586 trf 6 17.3 6 85 6 109 0 55 0 44 0.99 TCCTCT chr1 38886539 38886601 trf 3 20.3 3 76 3 61 0 43 0 56 0.99 TCT chr1 38887412 38887443 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 38887523 38887599 trf 2 38.0 2 97 0 143 48 50 0 1 1.09 CA chr1 38894844 38894878 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 38899021 38899063 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 38899063 38899097 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 38899096 38899137 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 38900248 38900292 trf 3 14.7 3 100 0 88 68 0 0 31 0.90 AAT chr1 38902022 38902065 trf 4 11.0 4 95 5 79 48 0 25 25 1.51 TAGA chr1 38902452 38902574 trf 2 63.0 2 93 6 216 48 51 0 0 1.00 CA chr1 38904658 38904829 trf 2 85.5 2 77 2 164 2 40 7 49 1.42 CT chr1 38904828 38904866 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 38905880 38906069 trf 4 49.0 4 77 9 151 21 27 3 47 1.66 ATCT chr1 38906581 38906635 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 38909971 38910025 trf 2 27.0 2 100 0 108 50 0 50 0 1.00 GA chr1 38910293 38910325 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 38910790 38910841 trf 2 25.5 2 100 0 102 0 50 0 49 1.00 CT chr1 38910843 38910889 trf 2 23.0 2 95 0 83 50 47 2 0 1.13 AC chr1 38915291 38915359 trf 2 34.0 2 100 0 136 0 50 0 50 1.00 TC chr1 38916363 38916389 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 38916529 38916647 trf 11 11.0 10 83 11 128 21 2 39 36 1.67 TTAGGTTAGG chr1 38916529 38916647 trf 5 22.0 5 83 11 128 21 2 39 36 1.67 TTAGG chr1 38917568 38917599 trf 4 7.8 4 100 0 62 25 22 0 51 1.48 ATTC chr1 38918380 38918412 trf 4 8.2 4 93 6 57 75 25 0 0 0.81 AAAC chr1 38921042 38921078 trf 4 9.0 4 100 0 72 25 0 25 50 1.50 ATGT chr1 38923970 38923996 trf 8 3.2 8 100 0 52 38 0 61 0 0.96 AGGGAGAG chr1 38929526 38929576 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 AG chr1 38931907 38931969 trf 5 12.4 5 98 0 115 0 37 0 62 0.95 TTCTC chr1 38932326 38932392 trf 12 5.3 12 87 5 78 0 69 0 30 0.88 TCTCCCCCTCCC chr1 38932326 38932381 trf 6 9.0 6 86 11 76 0 70 0 29 0.87 TCTCCC chr1 38934098 38934139 trf 12 3.4 12 83 10 57 0 9 46 43 1.36 GTGTGTGTGTGC chr1 38936324 38936379 trf 4 14.2 4 92 7 96 25 25 0 49 1.51 TATC chr1 38937455 38937487 trf 2 16.0 2 93 0 55 50 3 0 46 1.17 AT chr1 38938411 38938452 trf 2 20.5 2 100 0 82 51 0 0 48 1.00 AT chr1 38942727 38942808 trf 2 41.0 2 93 2 137 0 53 0 46 1.00 TC chr1 38945789 38945827 trf 7 5.4 7 90 9 60 86 13 0 0 0.56 AAAAACA chr1 38945791 38945848 trf 4 15.0 4 74 17 50 77 22 0 0 0.77 AAAC chr1 38948099 38948133 trf 4 8.5 4 100 0 68 76 0 0 23 0.79 AAAT chr1 38956618 38956643 trf 5 5.0 5 100 0 50 20 20 40 20 1.92 GGTCA chr1 38957263 38957306 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 38960461 38960724 trf 5 52.2 5 96 1 229 0 41 0 58 0.98 TCTTC chr1 38960655 38960741 trf 5 17.4 5 92 5 59 1 29 0 69 0.96 TTCTT chr1 38968853 38968880 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 38971270 38971301 trf 4 7.8 4 100 0 62 51 22 25 0 1.48 AGAC chr1 38975399 38975430 trf 4 7.5 4 92 7 53 0 0 22 77 0.77 TTGT chr1 38980248 38980309 trf 12 5.1 12 74 7 52 6 54 0 39 1.27 TCCCTCCCTTCC chr1 38981120 38981180 trf 2 30.0 2 93 0 102 50 3 46 0 1.18 AG chr1 38998620 38998671 trf 2 25.5 2 100 0 102 0 0 50 49 1.00 GT chr1 39005242 39005300 trf 2 29.0 2 100 0 116 50 0 50 0 1.00 GA chr1 39011808 39011886 trf 6 12.8 6 72 22 65 80 16 1 1 0.84 AAAAAC chr1 39011811 39011880 trf 8 7.8 9 74 19 65 79 17 1 1 0.88 AACAAAAAC chr1 39011845 39011889 trf 7 6.1 7 80 15 54 86 13 0 0 0.57 AAAAAAC chr1 39013809 39013924 trf 2 58.0 2 77 1 88 45 41 6 6 1.56 AC chr1 39016296 39016328 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 39022036 39022077 trf 5 7.6 5 84 15 55 0 7 75 17 1.02 GGGTG chr1 39022036 39022079 trf 11 3.9 11 100 0 86 0 9 72 18 1.11 GGGTGGGGCTG chr1 39022039 39022079 trf 6 7.2 6 83 16 59 0 10 70 20 1.16 TGGGGC chr1 39023299 39023348 trf 2 24.5 2 91 0 80 48 46 0 4 1.20 AC chr1 39023397 39023441 trf 12 3.7 11 85 8 52 47 34 9 9 1.67 ACACACAATGC chr1 39024859 39024970 trf 6 18.5 6 77 0 105 45 44 6 3 1.46 CACACA chr1 39024859 39024970 trf 4 27.8 4 79 0 105 45 44 6 3 1.46 CACA chr1 39030543 39030575 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 AT chr1 39030906 39030990 trf 8 9.8 8 74 13 69 1 60 1 36 1.12 TCTCCCTC chr1 39038432 39038468 trf 2 17.5 2 94 5 63 50 2 0 47 1.15 AT chr1 39042668 39042735 trf 6 11.7 6 85 9 70 0 74 0 25 0.82 TCCCTC chr1 39042669 39042752 trf 6 14.5 6 74 12 68 0 75 0 24 0.80 CCCTCC chr1 39044759 39044800 trf 2 20.0 2 95 5 73 48 48 0 2 1.14 AC chr1 39051210 39051264 trf 4 13.5 4 92 0 90 25 24 0 50 1.50 ATCT chr1 39054312 39054350 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 39055164 39055243 trf 2 39.5 2 97 0 149 0 48 0 51 1.00 TC chr1 39055589 39055626 trf 3 12.7 3 94 5 67 32 67 0 0 0.91 ACC chr1 39056031 39056074 trf 12 3.8 12 79 17 56 48 4 9 37 1.56 GTATATATAACA chr1 39067318 39067343 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 39076555 39076597 trf 12 3.5 12 90 0 66 59 0 7 33 1.25 AATAATAATGAT chr1 39076555 39076597 trf 3 14.0 3 84 0 57 59 0 7 33 1.25 AAT chr1 39078984 39079043 trf 2 30.0 2 93 3 102 50 0 49 0 1.00 GA chr1 39079201 39079248 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 39079247 39079303 trf 2 28.0 2 100 0 112 0 0 50 50 1.00 TG chr1 39079792 39079956 trf 4 42.2 4 76 10 54 50 9 21 18 1.74 ATAG chr1 39079873 39079940 trf 12 5.6 12 92 0 107 52 19 25 2 1.60 AGACAGACAGAC chr1 39079873 39079940 trf 8 8.4 8 91 0 107 52 19 25 2 1.60 AGACAGAC chr1 39080052 39080170 trf 2 59.0 2 76 0 92 7 5 39 46 1.57 TG chr1 39089027 39089071 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 39090492 39090537 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 39091598 39091642 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 39093756 39093813 trf 2 28.5 2 96 0 105 50 47 0 1 1.11 AC chr1 39099621 39099662 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 39099661 39099707 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 39100196 39100237 trf 2 20.5 2 84 0 55 46 46 2 4 1.37 CA chr1 39104705 39104747 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 39108535 39108580 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 39109814 39109856 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 39111175 39111439 trf 4 67.8 4 77 8 249 23 30 2 43 1.67 ATCT chr1 39117380 39117445 trf 2 32.5 2 90 0 103 49 46 1 3 1.27 AC chr1 39117448 39117485 trf 2 18.5 2 100 0 74 51 0 48 0 1.00 AG chr1 39119707 39119756 trf 2 24.5 2 95 0 89 53 0 46 0 1.00 AG chr1 39120510 39120549 trf 6 6.5 6 96 0 60 0 10 48 41 1.37 TGTGCG chr1 39121129 39121155 trf 7 3.7 7 100 0 52 61 0 0 38 0.96 ATAAATT chr1 39127304 39127344 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 39128854 39128945 trf 9 10.8 9 68 17 52 12 62 0 25 1.29 CTCCTCCCA chr1 39135089 39135150 trf 2 30.5 2 100 0 122 0 49 0 50 1.00 TC chr1 39137172 39137197 trf 5 5.0 5 100 0 50 60 40 0 0 0.97 AAACC chr1 39139129 39139180 trf 2 25.5 2 87 0 75 49 45 0 5 1.26 CA chr1 39140908 39140985 trf 6 12.8 6 95 0 82 0 49 0 50 1.00 CTTCTC chr1 39140908 39140955 trf 3 15.7 3 86 0 67 0 40 0 59 0.97 CTT chr1 39140935 39140982 trf 3 15.7 3 86 0 67 0 59 0 40 0.97 CTC chr1 39145816 39146231 trf 10 40.9 10 68 15 138 48 34 9 6 1.62 ACACAGACAC chr1 39145852 39146215 trf 2 180.5 2 70 5 140 49 35 8 6 1.59 AC chr1 39146454 39146682 trf 4 53.8 4 93 2 262 68 0 31 0 0.90 AAAG chr1 39147022 39147079 trf 6 9.5 6 98 0 105 0 64 15 19 1.28 CCTGCC chr1 39149256 39149384 trf 12 10.2 12 69 12 78 44 36 7 11 1.68 ACATACACACAC chr1 39153605 39153640 trf 3 11.7 3 100 0 70 34 0 0 65 0.93 TAT chr1 39154658 39154705 trf 3 15.7 3 100 0 94 65 0 0 34 0.93 ATA chr1 39155896 39155930 trf 4 8.5 4 93 0 59 23 20 52 2 1.60 GGCA chr1 39156603 39156670 trf 8 9.1 8 72 18 56 0 34 11 53 1.38 TCTCTCTG chr1 39156603 39156660 trf 2 28.5 2 81 0 51 0 36 10 52 1.36 TC chr1 39156607 39156664 trf 12 4.9 12 82 8 73 0 35 12 52 1.39 TCTCTCTGTCTG chr1 39156676 39156718 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 39158235 39158327 trf 3 30.7 3 78 8 89 41 0 58 0 0.98 AGG chr1 39158325 39158409 trf 3 28.0 3 97 0 159 67 0 32 0 0.91 AGA chr1 39169176 39169221 trf 2 22.5 2 95 0 81 0 2 48 48 1.13 TG chr1 39171616 39171647 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 39174268 39174312 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 39174311 39174341 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 39174894 39174927 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 39175058 39175148 trf 8 11.8 8 75 9 89 47 28 2 21 1.62 CACATATA chr1 39178753 39178789 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 39183100 39183368 trf 6 44.7 6 67 8 71 3 36 10 49 1.55 TCTCTC chr1 39183134 39183358 trf 8 29.2 8 70 17 138 4 34 10 50 1.56 TCTCTGTC chr1 39187459 39187631 trf 6 28.7 6 100 0 344 33 16 50 0 1.46 GCAGAG chr1 39188638 39188676 trf 5 8.0 5 88 11 62 0 0 21 78 0.74 TGTTT chr1 39189508 39189564 trf 2 28.0 2 96 0 103 51 0 48 0 1.00 AG chr1 39192109 39192161 trf 2 26.0 2 96 0 95 48 50 1 0 1.12 AC chr1 39192162 39192287 trf 6 22.0 6 73 14 88 34 0 65 0 0.93 GGGAGA chr1 39193659 39193732 trf 3 24.3 3 76 15 62 36 1 61 0 1.05 GAG chr1 39196064 39196097 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 39203784 39203814 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 39209113 39209270 trf 8 19.9 8 67 10 63 45 11 17 26 1.82 ACATAGAT chr1 39217007 39217041 trf 2 17.5 2 93 6 61 50 0 50 0 1.00 GA chr1 39221020 39221108 trf 10 8.2 10 73 14 59 2 29 19 48 1.61 TCTGTCTCTC chr1 39222697 39223119 trf 2 211.0 2 84 0 466 43 47 0 9 1.36 CA chr1 39223972 39224002 trf 9 3.3 9 90 0 51 10 20 46 23 1.80 GGCCTGTGA chr1 39225971 39226004 trf 2 16.5 2 93 0 57 48 3 0 48 1.17 TA chr1 39226118 39226157 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 39228853 39228878 trf 4 6.2 4 100 0 50 24 52 0 24 1.48 CCAT chr1 39242506 39242589 trf 4 20.8 4 71 4 51 12 1 46 39 1.49 TGTG chr1 39242509 39242588 trf 8 9.9 8 70 10 63 12 1 48 37 1.50 GTGTGTGA chr1 39244380 39244423 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 39247548 39247578 trf 12 2.5 12 94 0 51 46 36 3 13 1.60 CACACATACATA chr1 39249979 39250006 trf 5 5.4 5 100 0 54 0 0 18 81 0.69 TTTTG chr1 39250162 39250222 trf 12 5.7 12 69 28 55 20 51 15 13 1.75 GCACCCCACTGT chr1 39253790 39253839 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 39255855 39255926 trf 6 11.8 6 95 0 97 8 23 33 33 1.85 TGCTGA chr1 39259594 39259622 trf 12 2.3 12 100 0 56 35 32 7 25 1.83 CTAACTAGCTAC chr1 39261011 39261055 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 39269146 39269183 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 39269889 39269934 trf 3 15.0 3 100 0 90 33 0 33 33 1.58 TAG chr1 39271382 39271417 trf 2 17.5 2 100 0 70 48 0 0 51 1.00 TA chr1 39272253 39272296 trf 12 3.6 12 83 0 50 39 23 37 0 1.55 AGACAGACAGGC chr1 39272877 39272908 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 39273691 39273776 trf 6 15.2 6 77 14 83 2 35 11 50 1.52 TCTCTG chr1 39273773 39273803 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 TG chr1 39274129 39274183 trf 5 10.4 5 86 6 72 24 1 74 0 0.92 AGGGG chr1 39275253 39275289 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 39275734 39275788 trf 6 9.0 6 77 0 54 50 7 40 1 1.41 GAGAGA chr1 39275734 39275780 trf 8 5.8 8 89 0 74 47 8 41 2 1.46 GAGAGACA chr1 39277873 39277900 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 39282434 39282555 trf 2 60.0 2 74 1 80 9 4 38 48 1.54 TG chr1 39283672 39283740 trf 2 34.0 2 96 0 127 0 1 48 50 1.10 GT chr1 39283756 39283791 trf 4 8.8 4 100 0 70 0 48 25 25 1.51 CTGC chr1 39288789 39288819 trf 8 3.8 8 90 0 51 0 50 13 36 1.42 CCTGCCTT chr1 39288963 39288995 trf 2 16.0 2 93 0 55 46 0 3 50 1.17 AT chr1 39289771 39289814 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 39290692 39290927 trf 6 37.8 6 77 13 208 0 69 0 30 0.88 TCTCCC chr1 39291141 39291175 trf 3 11.3 3 93 0 59 2 0 61 35 1.11 TGG chr1 39294842 39294881 trf 4 9.8 4 94 0 60 76 5 0 17 0.96 AAAT chr1 39296098 39296143 trf 4 11.2 4 100 0 90 51 0 48 0 1.00 AGGA chr1 39302736 39302770 trf 6 5.8 6 96 3 61 0 0 11 88 0.52 TTTTTG chr1 39304326 39304372 trf 4 11.5 4 100 0 92 50 0 50 0 1.00 GAAG chr1 39304465 39304642 trf 12 16.2 11 66 19 61 6 10 38 44 1.65 GTGTGTGCTGT chr1 39304474 39304532 trf 2 29.5 2 78 3 55 1 6 41 50 1.39 TG chr1 39306729 39306769 trf 12 3.3 12 100 0 80 30 27 22 20 1.98 TTCCCAGGAAAG chr1 39308265 39308314 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 39310901 39310938 trf 4 9.2 4 93 0 65 51 21 0 27 1.48 ACAT chr1 39313187 39313253 trf 2 33.0 2 100 0 132 50 0 50 0 1.00 AG chr1 39313255 39313306 trf 2 25.5 2 83 0 66 1 3 41 52 1.31 TG chr1 39315487 39315561 trf 3 24.7 3 100 0 148 67 0 32 0 0.91 AAG chr1 39320559 39320605 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 39321075 39321109 trf 4 8.5 4 86 0 50 67 0 0 32 0.91 ATAA chr1 39328859 39328905 trf 7 6.9 7 97 2 78 89 10 0 0 0.50 AAAAACA chr1 39328859 39328904 trf 1 45.0 1 81 0 54 91 8 0 0 0.43 A chr1 39329621 39329806 trf 8 22.1 8 75 8 131 25 1 22 50 1.55 TGTATATG chr1 39330354 39330458 trf 5 20.0 5 74 14 52 0 0 25 74 0.89 GTTTT chr1 39330405 39330459 trf 6 9.3 6 92 8 94 0 0 16 83 0.65 TTGTTT chr1 39330409 39330458 trf 11 4.4 11 94 5 89 0 0 16 83 0.64 TTTTGTTTTTG chr1 39337435 39337471 trf 2 18.5 2 94 5 65 0 0 47 52 1.00 TG chr1 39342105 39342169 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 39342168 39342230 trf 10 6.4 10 83 7 83 48 38 1 11 1.49 CACATACACA chr1 39342168 39342230 trf 2 31.0 2 76 0 52 48 38 1 11 1.49 CA chr1 39342173 39342230 trf 12 4.6 12 85 8 78 49 38 1 10 1.48 ACACACACATAC chr1 39343249 39343287 trf 12 3.1 12 92 7 67 23 73 0 2 0.95 CACCACCCCCAC chr1 39343251 39343290 trf 6 6.3 6 82 5 51 20 76 0 2 0.90 CCACCC chr1 39347393 39347471 trf 4 20.0 4 88 5 79 0 58 0 41 0.98 TCTC chr1 39348357 39348427 trf 2 35.0 2 100 0 140 0 50 0 50 1.00 TC chr1 39352391 39352443 trf 1 52.0 1 88 0 77 0 5 0 94 0.32 T chr1 39353200 39353248 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 39353247 39353287 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 39353320 39353393 trf 6 12.2 6 97 0 101 43 0 56 0 0.99 AGAGAG chr1 39353782 39353816 trf 2 17.5 2 93 6 61 0 52 0 47 1.00 CT chr1 39354710 39354820 trf 2 55.0 2 91 7 179 2 0 47 50 1.15 TG chr1 39355453 39355556 trf 4 25.5 4 88 7 102 0 25 5 67 1.18 TTCT chr1 39358804 39358839 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 39359057 39359082 trf 10 2.5 10 100 0 50 0 0 28 72 0.86 TTTGTGTTTG chr1 39359844 39359898 trf 11 4.9 11 82 6 65 14 12 72 0 1.13 GGGGCAGGGGC chr1 39359853 39359898 trf 11 3.9 12 91 2 67 15 15 68 0 1.21 GGGAGCAGGGGC chr1 39360108 39360134 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TGTTT chr1 39388666 39388703 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 39390358 39390383 trf 4 6.2 4 100 0 50 0 52 24 24 1.48 CTGC chr1 39391929 39391962 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 39403431 39403467 trf 2 18.0 2 94 0 63 50 47 0 2 1.15 AC chr1 39404413 39404462 trf 6 8.0 6 79 4 53 2 59 2 36 1.21 CCTCTC chr1 39414666 39414695 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 39414721 39414748 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 39414747 39414777 trf 2 15.0 2 92 0 51 46 0 53 0 1.00 AG chr1 39427623 39427669 trf 10 4.6 10 83 0 56 2 8 39 50 1.46 GTGTGTCTGT chr1 39429640 39429667 trf 5 5.4 5 100 0 54 81 0 0 18 0.69 AAATA chr1 39433445 39433476 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 39436526 39436560 trf 8 4.4 8 85 7 52 26 8 23 41 1.83 ATGCATGT chr1 39436595 39436633 trf 4 9.5 4 94 0 67 26 0 26 47 1.52 GTAT chr1 39437484 39437526 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 39438160 39438258 trf 12 8.2 12 91 0 133 9 0 58 32 1.30 TGGTGGTGATGG chr1 39438160 39438246 trf 9 9.6 9 90 0 118 6 0 59 33 1.24 TGGTGGTGG chr1 39438160 39438246 trf 6 14.3 6 91 0 118 6 0 59 33 1.24 TGGTGG chr1 39438163 39438267 trf 6 17.3 6 89 0 109 11 0 55 32 1.36 TGGTGA chr1 39444745 39444862 trf 10 11.9 10 69 17 75 47 35 1 14 1.54 CATACACACA chr1 39444760 39444849 trf 4 22.2 4 83 0 70 50 37 0 12 1.40 ACAC chr1 39444761 39444850 trf 12 7.0 13 76 12 87 49 37 0 13 1.42 CACACACATACAT chr1 39444774 39444855 trf 8 10.4 8 77 5 85 51 34 0 13 1.41 ACACACAT chr1 39444778 39444859 trf 4 20.8 4 81 5 58 51 33 0 14 1.43 ACAT chr1 39451717 39451743 trf 12 2.2 12 100 0 52 53 23 7 15 1.67 AATCAGTACACA chr1 39453042 39453195 trf 8 19.1 8 70 0 54 48 34 1 15 1.56 ACACACAC chr1 39453048 39453234 trf 12 14.8 12 69 14 83 48 32 2 17 1.59 ACACACACATAT chr1 39453050 39453219 trf 10 16.7 10 69 19 66 47 32 2 17 1.60 ACACACATAT chr1 39454401 39454554 trf 2 77.5 2 75 2 94 50 35 6 6 1.54 AC chr1 39465147 39465173 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 39469419 39469523 trf 5 21.6 5 71 14 58 0 63 0 36 0.95 TCCTC chr1 39469438 39469526 trf 5 17.6 5 77 0 59 0 64 0 35 0.94 CCTCC chr1 39473426 39473479 trf 5 11.0 5 84 11 67 79 18 1 0 0.83 AAAAC chr1 39475442 39475476 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 TA chr1 39475487 39475514 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 39476063 39476103 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 GA chr1 39480177 39480242 trf 3 21.7 3 96 0 121 66 0 33 0 0.92 AAG chr1 39482720 39482748 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 GA chr1 39484404 39484557 trf 6 25.3 6 94 3 184 62 0 37 0 0.95 AAGAAG chr1 39484470 39484553 trf 9 9.2 9 94 5 54 69 0 30 0 0.88 AAGAAAAGA chr1 39487083 39487108 trf 2 12.5 2 100 0 50 48 52 0 0 1.00 CA chr1 39487959 39488001 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 39488780 39488819 trf 12 3.2 12 88 0 51 48 20 0 30 1.50 AATCAATTAATC chr1 39489416 39489461 trf 6 7.7 6 80 14 58 0 0 17 82 0.68 TTTTGT chr1 39490414 39490443 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 39490757 39490797 trf 4 9.5 4 89 10 62 70 2 27 0 1.01 AGAA chr1 39490796 39490845 trf 4 12.2 4 100 0 98 24 0 75 0 0.80 GGAG chr1 39493507 39493544 trf 2 18.5 2 94 0 65 48 48 2 0 1.15 AC chr1 39493543 39493594 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 39495170 39495245 trf 2 37.5 2 91 0 114 49 5 0 45 1.25 TA chr1 39498764 39498824 trf 2 30.0 2 96 0 111 0 48 0 51 1.00 TC chr1 39499474 39499886 trf 10 39.4 10 75 7 320 14 37 18 29 1.90 CTGTCCTGCA chr1 39503663 39503723 trf 2 30.0 2 93 0 102 48 48 3 0 1.18 CA chr1 39504179 39504231 trf 2 26.0 2 92 0 86 0 3 50 46 1.20 TG chr1 39505497 39505526 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 39507527 39507565 trf 12 3.2 12 88 3 51 50 34 2 13 1.55 ACATATACACAC chr1 39509045 39509079 trf 11 3.0 11 91 8 59 0 0 82 17 0.67 TGGGGGTGGGG chr1 39509045 39509079 trf 6 5.8 6 93 6 61 0 0 82 17 0.67 TGGGGG chr1 39510273 39510316 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 39517796 39517866 trf 4 18.0 4 85 14 94 0 0 21 78 0.75 TTTG chr1 39518354 39518396 trf 3 14.7 3 80 9 52 73 23 0 2 0.94 AAC chr1 39522951 39523060 trf 6 18.2 6 100 0 218 0 50 16 33 1.45 CTCTGC chr1 39525709 39525773 trf 2 33.5 2 78 9 71 43 1 51 3 1.26 AG chr1 39527087 39527127 trf 2 20.0 2 94 0 71 52 0 47 0 1.00 GA chr1 39528718 39528766 trf 8 6.0 8 95 0 87 27 12 60 0 1.32 GGCAGAGG chr1 39529340 39529378 trf 2 19.5 2 94 5 69 0 0 50 50 1.00 TG chr1 39531778 39531821 trf 4 10.8 4 100 0 86 25 0 0 74 0.82 ATTT chr1 39533331 39533518 trf 10 18.1 10 83 4 167 0 61 1 36 1.10 CCTCTCCTCT chr1 39533334 39533461 trf 12 9.8 15 66 28 87 0 65 0 34 0.93 CTCCTCCTCCTCCTC chr1 39534649 39534697 trf 3 16.0 3 100 0 96 33 0 33 33 1.58 TAG chr1 39540075 39540101 trf 4 6.5 4 100 0 52 23 0 26 50 1.50 GTAT chr1 39549540 39549579 trf 8 4.6 8 81 12 51 87 0 7 5 0.68 AAAAAAAG chr1 39551911 39551955 trf 2 22.0 2 86 9 63 0 50 2 47 1.13 CT chr1 39553259 39553305 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 GT chr1 39558671 39558698 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 39564788 39564813 trf 11 2.3 11 100 0 50 52 28 20 0 1.47 CAGACACAAAG chr1 39570353 39570393 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 39580394 39580471 trf 5 15.4 5 97 0 145 0 38 0 61 0.96 CTTCT chr1 39581436 39581493 trf 2 29.5 2 89 7 91 0 45 0 54 0.99 TC chr1 39581498 39581555 trf 10 5.5 11 79 12 57 0 66 0 33 0.92 CCTCTCCCCCT chr1 39587211 39587265 trf 2 27.5 2 96 3 101 50 50 0 0 1.00 AC chr1 39590252 39590308 trf 5 11.0 5 87 11 62 80 19 0 0 0.71 AAAAC chr1 39591517 39591542 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 39592684 39592720 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 39594511 39594565 trf 2 27.0 2 96 0 99 1 0 48 50 1.11 TG chr1 39594565 39594622 trf 6 9.5 6 98 0 96 50 12 36 0 1.40 AGAGAC chr1 39595243 39595268 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 39595291 39595425 trf 12 11.5 12 83 6 150 0 61 0 38 0.96 TCTCTCTCTCCC chr1 39595291 39595433 trf 6 23.7 6 88 0 131 0 61 0 38 0.96 TCTCTC chr1 39596938 39596992 trf 1 54.0 1 92 0 90 0 3 0 96 0.23 T chr1 39597296 39597326 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 39602915 39602958 trf 2 21.5 2 80 0 50 0 41 9 48 1.35 CT chr1 39602916 39602958 trf 8 5.5 8 86 11 61 0 40 9 50 1.35 TCTCTCTG chr1 39603200 39603231 trf 12 2.6 12 100 0 62 19 51 0 29 1.47 CTCTCTCACACA chr1 39603575 39603611 trf 4 8.8 4 87 6 54 47 0 50 2 1.15 GAAG chr1 39603660 39603771 trf 12 8.6 12 73 13 60 8 12 29 49 1.69 TGTGTGTATGTC chr1 39603706 39603779 trf 12 6.2 12 77 4 60 5 13 30 50 1.64 TGTATGTCTCTG chr1 39604542 39604884 trf 8 42.9 8 67 16 149 50 31 12 4 1.61 ACACACAG chr1 39604551 39604930 trf 10 36.6 10 69 18 188 51 31 12 5 1.61 CACACAGACA chr1 39604551 39604932 trf 4 95.5 4 68 0 107 51 31 12 4 1.61 CACA chr1 39609638 39609683 trf 6 7.3 6 85 14 65 2 82 0 15 0.77 CCCTCC chr1 39610558 39610591 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 39611720 39611780 trf 6 10.0 6 100 0 120 50 16 0 33 1.46 TACATA chr1 39612346 39612383 trf 3 12.7 3 88 5 58 0 64 0 35 0.94 CCT chr1 39615572 39615614 trf 3 14.0 3 89 0 66 33 4 61 0 1.17 GAG chr1 39615689 39615725 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 39617942 39618176 trf 8 30.1 8 68 17 111 48 35 1 14 1.53 ATACACAC chr1 39617961 39618177 trf 2 108.5 2 71 2 85 48 36 0 14 1.50 CA chr1 39620390 39620453 trf 2 31.5 2 93 0 108 0 0 47 52 1.00 GT chr1 39624262 39624296 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 39624295 39624343 trf 2 24.0 2 95 0 87 47 0 2 50 1.12 AT chr1 39625435 39625466 trf 5 6.4 5 92 7 55 80 19 0 0 0.71 AAAAC chr1 39625436 39625471 trf 9 3.9 9 89 10 54 80 20 0 0 0.72 AAACAAAAC chr1 39625852 39625901 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 39626006 39626051 trf 4 11.2 4 100 0 90 0 51 0 48 1.00 CCTT chr1 39626061 39626113 trf 12 4.5 11 79 13 52 0 42 1 55 1.10 TCTTTTCCTCC chr1 39627815 39627860 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 39629454 39629490 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 39630846 39630888 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 39639149 39639204 trf 10 5.3 10 80 8 65 41 41 5 10 1.63 CACACATGCA chr1 39641129 39641156 trf 2 13.5 2 100 0 54 48 0 0 51 1.00 TA chr1 39645621 39645980 trf 8 44.6 8 68 9 160 48 33 12 5 1.62 ACACACAG chr1 39645702 39645883 trf 10 17.1 10 76 13 157 50 34 11 3 1.57 ACACACACAG chr1 39646776 39646818 trf 3 14.0 3 100 0 84 33 0 0 66 0.92 ATT chr1 39651465 39651530 trf 1 65.0 1 75 0 58 0 0 12 87 0.54 T chr1 39651465 39651527 trf 6 10.7 6 88 8 69 0 0 12 87 0.55 TTTTGT chr1 39651470 39651528 trf 7 8.6 7 85 14 86 0 0 12 87 0.53 TTTTGTT chr1 39653940 39653982 trf 4 10.5 4 94 0 75 0 0 23 76 0.79 TGTT chr1 39655919 39655948 trf 4 7.2 4 100 0 58 51 24 0 24 1.48 ATAC chr1 39659074 39659127 trf 2 26.5 2 86 0 61 49 43 1 5 1.37 CA chr1 39664993 39665041 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 39669160 39669187 trf 4 6.8 4 100 0 54 51 22 25 0 1.48 AGAC chr1 39673512 39673563 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 39675511 39675604 trf 8 11.8 8 72 15 68 17 1 34 47 1.55 ATGTGTGT chr1 39675512 39675602 trf 12 7.6 12 69 16 53 16 1 34 47 1.54 TGTGTGTATGTG chr1 39675634 39675681 trf 4 12.0 4 81 4 60 25 42 0 31 1.55 CATC chr1 39675635 39675711 trf 8 9.4 8 74 17 59 25 35 1 38 1.64 ATCCATCT chr1 39675666 39676093 trf 4 109.2 4 72 12 262 24 26 2 46 1.67 ATCT chr1 39676879 39676921 trf 3 14.3 3 95 5 77 35 0 0 64 0.94 ATT chr1 39679171 39679196 trf 12 2.1 12 100 0 50 12 16 40 32 1.84 AGCCTGTGTGTG chr1 39684705 39684787 trf 2 41.0 2 97 0 137 50 3 46 0 1.19 AG chr1 39689459 39689502 trf 3 14.3 3 100 0 86 0 0 65 34 0.93 TGG chr1 39690850 39690891 trf 8 5.1 8 82 11 57 82 17 0 0 0.66 CAAAAAAA chr1 39691760 39691804 trf 3 14.7 3 100 0 88 0 34 34 31 1.58 GCT chr1 39692283 39692359 trf 4 20.2 4 97 2 117 0 73 0 26 0.83 CCTC chr1 39692358 39692417 trf 5 11.8 5 96 0 109 0 38 0 61 0.96 CTTCT chr1 39697141 39697190 trf 2 25.0 2 95 4 91 48 0 51 0 1.00 AG chr1 39698522 39698553 trf 10 3.1 10 90 0 53 16 9 61 12 1.56 GGTCAGAGGG chr1 39700420 39700469 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 39700978 39701025 trf 5 9.8 5 90 4 71 0 0 17 82 0.66 TTTTG chr1 39701984 39702009 trf 10 2.5 10 100 0 50 40 52 8 0 1.31 CACACGCACA chr1 39706650 39706695 trf 12 3.6 12 85 11 63 6 15 26 51 1.68 TGTGTCTCTGTA chr1 39706662 39706708 trf 10 4.4 10 78 10 56 8 15 23 52 1.70 TGTATGTCTC chr1 39706902 39706960 trf 2 29.0 2 96 0 107 51 48 0 0 1.00 AC chr1 39708519 39708551 trf 6 5.3 6 96 0 55 12 0 53 34 1.39 TGGTGA chr1 39712874 39712932 trf 4 14.5 4 92 0 89 27 3 48 20 1.66 GATG chr1 39721906 39721941 trf 12 2.9 12 86 0 52 25 20 0 54 1.45 TATCTATTTATC chr1 39721906 39721936 trf 4 7.5 4 92 0 51 26 20 0 53 1.46 TATC chr1 39735240 39735299 trf 4 14.8 4 92 0 91 22 25 3 49 1.65 TATC chr1 39745877 39746058 trf 12 14.7 12 67 14 82 34 4 13 46 1.64 ATATATGTATAT chr1 39745877 39746050 trf 8 21.8 8 70 10 77 35 4 13 46 1.63 ATATATGT chr1 39745927 39746050 trf 6 20.8 6 69 9 56 34 2 13 48 1.56 TATATG chr1 39747065 39747197 trf 4 33.2 4 87 4 196 0 71 0 28 0.92 TCCC chr1 39748259 39748296 trf 11 3.2 12 81 11 51 78 16 5 0 0.93 AAACAAAAGCAA chr1 39752703 39752836 trf 6 22.2 6 100 0 266 0 50 16 33 1.46 CTGCCT chr1 39755193 39755243 trf 8 5.7 9 90 9 61 6 2 44 48 1.39 ATGTGTGTG chr1 39755194 39755257 trf 12 5.4 12 83 7 67 7 3 41 47 1.48 TGTGTGTGCATG chr1 39755194 39755236 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 TG chr1 39755667 39756928 trf 5 259.4 5 90 5 1964 0 18 41 39 1.55 TGCTG chr1 39760794 39760845 trf 1 51.0 1 80 0 57 0 9 0 90 0.46 T chr1 39760799 39760845 trf 9 5.2 9 92 7 69 0 8 0 91 0.43 TTTTTTCTT chr1 39763359 39763401 trf 4 11.0 4 80 19 54 0 0 21 78 0.75 GTTT chr1 39764999 39765033 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 39766178 39766217 trf 2 19.5 2 94 0 69 51 0 48 0 1.00 GA chr1 39766590 39766632 trf 2 21.0 2 85 0 57 45 47 4 2 1.36 CA chr1 39773026 39773051 trf 8 3.1 8 100 0 50 88 12 0 0 0.53 AAAAAAAC chr1 39774398 39774437 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 39778306 39778333 trf 6 4.5 6 100 0 54 0 51 0 48 1.00 CCTTCT chr1 39778342 39778451 trf 9 11.7 9 71 13 60 1 48 0 48 1.18 TTCCTCTTC chr1 39778403 39778453 trf 6 8.5 6 76 12 50 0 48 0 52 1.00 CCTCTT chr1 39778903 39778937 trf 12 2.8 12 90 0 50 0 5 14 79 0.91 TCTTTTGTTTTG chr1 39783460 39783502 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 GT chr1 39786142 39786173 trf 2 15.5 2 93 0 53 51 45 0 3 1.17 AC chr1 39793174 39793220 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 CA chr1 39797968 39798023 trf 10 5.5 10 80 0 65 29 0 50 20 1.48 AGGAGTTGGG chr1 39800180 39800530 trf 4 91.2 4 78 11 324 24 26 4 44 1.72 TCTA chr1 39802111 39802144 trf 12 2.8 12 100 0 66 6 0 78 15 0.93 GGGGGTGGGTGA chr1 39804092 39804129 trf 4 9.5 4 88 5 58 75 24 0 0 0.80 AAAC chr1 39804428 39804459 trf 2 15.5 2 100 0 62 48 0 51 0 1.00 GA chr1 39805927 39805967 trf 4 10.0 4 100 0 80 50 0 25 25 1.50 GAAT chr1 39808123 39808229 trf 5 21.6 5 93 3 180 38 0 61 0 0.96 AGAGG chr1 39808264 39808297 trf 6 5.5 6 100 0 66 18 0 81 0 0.68 GAGGGG chr1 39808509 39808534 trf 11 2.3 11 100 0 50 16 32 0 52 1.44 TTTTCCACCAT chr1 39809020 39809070 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 39809456 39809495 trf 7 5.3 7 82 11 51 12 82 0 5 0.83 CCCCACC chr1 39809588 39809630 trf 3 14.0 3 100 0 84 33 33 0 33 1.58 CAT chr1 39815181 39815213 trf 2 16.0 2 100 0 64 0 50 0 50 1.00 TC chr1 39817776 39817809 trf 2 17.0 2 93 6 59 0 0 51 48 1.00 GT chr1 39818474 39818509 trf 4 8.8 4 93 0 61 0 0 20 80 0.72 TTTG chr1 39823080 39823117 trf 2 18.5 2 94 0 65 51 48 0 0 1.00 CA chr1 39824723 39824855 trf 2 65.5 2 74 1 111 8 1 41 48 1.42 TG chr1 39827074 39827523 trf 10 42.3 10 62 15 82 19 6 29 44 1.75 TATATGTGTG chr1 39827264 39827470 trf 12 17.4 12 70 14 106 17 4 31 47 1.67 TGTGTATGTATG chr1 39827284 39827479 trf 8 23.2 8 68 14 83 17 4 31 46 1.67 TATGTGTG chr1 39835557 39835591 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 CA chr1 39836865 39836921 trf 2 28.0 2 96 0 103 0 48 0 51 1.00 TC chr1 39837842 39837942 trf 6 16.5 6 92 2 65 49 0 51 0 1.00 AAGAGG chr1 39837852 39837907 trf 3 18.3 3 96 0 101 36 0 63 0 0.95 AGG chr1 39837905 39837942 trf 3 12.3 3 100 0 74 64 0 35 0 0.94 GAA chr1 39839186 39839213 trf 5 5.4 5 100 0 54 18 0 0 81 0.69 TTATT chr1 39840173 39840208 trf 12 2.9 12 100 0 70 17 60 14 8 1.58 CACCTCCCAGCG chr1 39840447 39840512 trf 5 13.0 5 100 0 130 0 0 20 80 0.72 TGTTT chr1 39842285 39842333 trf 2 24.0 2 95 0 87 47 50 0 2 1.12 CA chr1 39842906 39842955 trf 1 49.0 1 79 0 53 0 0 10 89 0.48 T chr1 39843749 39843783 trf 2 17.0 2 93 0 59 50 2 47 0 1.16 AG chr1 39844939 39844985 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 39853533 39853586 trf 3 17.7 3 96 0 97 69 0 0 30 0.88 AAT chr1 39855206 39855232 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 39855231 39855284 trf 2 27.0 2 92 3 90 50 0 49 0 1.00 GA chr1 39855650 39855841 trf 6 31.3 6 94 3 247 51 0 48 0 1.00 GAAGAG chr1 39855843 39855900 trf 5 11.4 5 92 0 87 73 0 26 0 0.83 AGAAA chr1 39858997 39859116 trf 5 25.6 5 95 2 150 42 0 57 0 0.98 GGAAG chr1 39859467 39859508 trf 10 4.0 10 84 6 55 26 19 39 14 1.90 TCACAGGAGG chr1 39860304 39860358 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 AC chr1 39861416 39861514 trf 6 16.0 6 70 12 56 1 50 0 48 1.07 TTCCTC chr1 39863977 39864223 trf 6 40.5 6 85 13 335 33 0 66 0 0.92 GAGGGA chr1 39867500 39867547 trf 12 3.9 12 83 8 60 46 40 2 10 1.50 ATACACACACAC chr1 39867573 39867720 trf 2 75.5 2 79 5 95 44 42 6 6 1.55 CA chr1 39867772 39867813 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 39871544 39871804 trf 6 43.3 6 80 0 232 1 8 45 45 1.42 GTGTGT chr1 39871544 39871804 trf 4 65.0 4 78 0 232 1 8 45 45 1.42 GTGT chr1 39874047 39874091 trf 7 6.4 7 92 7 65 0 11 0 88 0.51 TTTCTTT chr1 39874727 39874754 trf 8 3.4 8 100 0 54 0 62 0 37 0.95 CTCTCCCT chr1 39875831 39875896 trf 10 6.1 10 70 19 51 47 33 4 13 1.64 ACACATACAC chr1 39875859 39875890 trf 12 2.6 12 94 0 53 48 41 6 3 1.45 ACACACACAAGC chr1 39875922 39875975 trf 2 26.5 2 88 0 52 50 37 0 11 1.38 AC chr1 39876548 39876592 trf 5 8.0 6 87 7 51 0 13 0 86 0.57 CTTTTT chr1 39876550 39876590 trf 11 3.9 11 87 6 50 0 12 0 87 0.54 TTTTCTTTTTC chr1 39878581 39878622 trf 2 20.5 2 94 0 73 2 0 48 48 1.14 TG chr1 39878621 39879008 trf 8 46.6 8 64 20 93 31 2 19 47 1.62 TATGTATA chr1 39880573 39880611 trf 5 7.6 5 100 0 76 18 0 0 81 0.69 TTTAT chr1 39880796 39880829 trf 2 16.5 2 93 0 57 51 45 0 3 1.16 AC chr1 39885500 39885530 trf 4 7.5 4 100 0 60 0 23 50 26 1.50 TGCG chr1 39885527 39885552 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 39886110 39886513 trf 8 49.9 8 64 17 70 17 0 39 41 1.56 TGTGTGTA chr1 39886361 39886596 trf 2 118.5 2 72 3 143 11 0 48 40 1.40 TG chr1 39889818 39889848 trf 8 3.8 8 95 0 51 43 0 33 23 1.54 GAATGAGT chr1 39892034 39892087 trf 4 13.2 4 79 0 52 0 32 20 47 1.51 TGTC chr1 39894065 39894110 trf 2 23.0 2 88 4 65 4 0 51 44 1.21 TG chr1 39897905 39897938 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 39903581 39903651 trf 2 35.0 2 85 0 95 2 48 2 45 1.32 TC chr1 39903650 39903681 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 39904343 39904500 trf 4 40.8 4 70 16 73 48 29 3 19 1.64 ATAC chr1 39905199 39905247 trf 8 6.0 8 97 0 69 6 0 50 43 1.27 GAGTGTGT chr1 39905201 39905264 trf 6 10.5 6 91 0 81 7 0 46 46 1.32 GTGTGT chr1 39908530 39908579 trf 4 12.2 4 100 0 98 0 26 0 73 0.83 CTTT chr1 39908973 39908999 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 39912700 39912759 trf 8 7.4 8 78 0 64 10 5 38 45 1.60 TGTATGTG chr1 39916996 39917052 trf 6 9.3 6 90 0 67 41 0 8 50 1.34 ATATAT chr1 39916996 39917052 trf 4 14.0 4 88 0 67 41 0 8 50 1.34 ATAT chr1 39921912 39921940 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 39928105 39928170 trf 4 16.5 4 96 3 123 0 73 0 26 0.83 TCCC chr1 39933417 39933453 trf 6 6.0 6 100 0 72 0 33 33 33 1.58 GGCTCT chr1 39935962 39936288 trf 9 36.2 9 92 0 481 5 66 11 16 1.41 CCGCACTCC chr1 39938611 39938638 trf 10 2.7 10 100 0 54 18 0 29 51 1.46 TATGTGTATG chr1 39942377 39942423 trf 2 23.0 2 90 0 74 4 0 45 50 1.21 GT chr1 39944716 39944758 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 39945772 39945802 trf 7 4.4 7 91 8 53 13 0 0 86 0.57 TTTATTT chr1 39953230 39953272 trf 4 10.5 4 100 0 84 0 23 26 50 1.50 TGTC chr1 39954921 39954966 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 39957671 39957714 trf 2 21.5 2 85 0 59 0 6 51 41 1.29 GT chr1 39966078 39966202 trf 4 31.0 4 95 3 142 0 58 0 41 0.98 TTCC chr1 39971649 39971685 trf 5 7.2 5 100 0 72 0 0 22 77 0.76 GTTTT chr1 39973107 39973144 trf 2 18.5 2 94 0 65 2 0 45 51 1.15 TG chr1 39975120 39975157 trf 1 37.0 1 94 0 65 97 0 0 2 0.18 A chr1 39975739 39975781 trf 5 9.0 5 87 10 54 76 0 23 0 0.79 AAAAG chr1 39975773 39975811 trf 4 9.5 4 91 8 60 52 0 47 0 1.00 AAGG chr1 39982551 39982636 trf 4 21.2 4 84 9 84 3 21 28 47 1.67 TGTC chr1 39982640 39982683 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 39987710 39987737 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 39990817 39990860 trf 2 21.5 2 90 0 68 2 0 44 53 1.13 TG chr1 39993003 39993111 trf 2 54.0 2 88 0 153 5 0 49 45 1.25 GT chr1 39996256 39996285 trf 7 4.1 7 100 0 58 0 13 41 44 1.44 TGCTGTG chr1 40005039 40005083 trf 2 22.0 2 85 0 61 43 50 0 6 1.29 AC chr1 40009964 40009996 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 40010181 40010264 trf 2 41.0 2 74 11 53 48 39 1 10 1.46 CA chr1 40023743 40023785 trf 12 3.4 12 86 3 57 0 0 30 69 0.89 TGTTTGTGTGTT chr1 40024259 40024305 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 40028759 40028793 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 40032707 40032744 trf 4 9.2 4 100 0 74 24 0 48 27 1.51 TGGA chr1 40032741 40032791 trf 4 12.5 4 100 0 100 50 0 26 24 1.50 GATA chr1 40033077 40033108 trf 4 7.8 4 100 0 62 51 25 22 0 1.48 ACAG chr1 40033105 40033154 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 40033385 40033414 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 40034451 40034481 trf 11 2.7 11 89 0 51 0 10 0 90 0.47 TTTTTTTTCTT chr1 40037442 40037476 trf 4 8.2 4 93 6 59 73 26 0 0 0.83 AAAC chr1 40043259 40043286 trf 12 2.2 12 100 0 54 33 11 7 48 1.67 TCATATTTATAG chr1 40046402 40046466 trf 11 5.5 12 77 17 64 28 0 71 0 0.86 GGAGGGGAGGAG chr1 40046407 40046571 trf 5 30.6 5 68 20 66 29 0 68 1 1.02 GGGGA chr1 40049023 40049054 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 40055082 40055112 trf 6 4.8 6 92 8 51 13 36 0 50 1.42 CTCTTA chr1 40060061 40060101 trf 2 20.0 2 94 0 71 50 0 2 47 1.14 TA chr1 40061242 40061281 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 40062370 40062397 trf 2 13.5 2 100 0 54 0 48 0 51 1.00 TC chr1 40064163 40064206 trf 4 10.8 4 100 0 86 51 0 25 23 1.49 AGAT chr1 40066196 40066245 trf 2 24.5 2 100 0 98 48 51 0 0 1.00 CA chr1 40066634 40066675 trf 2 21.0 2 95 5 75 0 0 51 48 1.00 TG chr1 40067335 40067383 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 40068296 40068334 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 AG chr1 40068922 40068974 trf 6 8.7 6 95 0 95 32 0 67 0 0.91 GAGAGG chr1 40071301 40071329 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 40074515 40074565 trf 2 25.0 2 91 0 82 52 46 0 2 1.12 AC chr1 40078434 40078567 trf 5 26.4 5 73 6 90 35 3 18 42 1.68 ATATG chr1 40079240 40079282 trf 12 3.3 12 90 6 57 9 0 42 47 1.36 TGTGTGTATGTG chr1 40079718 40079755 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 40081907 40081953 trf 3 15.3 3 100 0 92 67 32 0 0 0.91 ACA chr1 40084507 40084543 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 40086605 40086645 trf 10 4.1 10 80 6 55 37 10 10 42 1.72 TATATAGTAC chr1 40087393 40087515 trf 2 64.5 2 72 11 60 0 45 7 46 1.31 TC chr1 40087531 40087562 trf 2 15.5 2 93 0 53 0 0 48 51 1.00 GT chr1 40088106 40088197 trf 2 45.5 2 74 0 56 12 2 41 43 1.54 GT chr1 40088109 40088343 trf 10 22.9 10 66 20 76 15 3 36 44 1.65 TGTGTGTGTA chr1 40088109 40088344 trf 12 20.9 11 67 20 62 15 3 37 43 1.65 TGTGTGTGTGA chr1 40092213 40092258 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 40093994 40094027 trf 12 2.5 13 85 14 50 36 0 63 0 0.95 AGGAGAGGGAGGG chr1 40094018 40094066 trf 2 24.0 2 95 0 87 47 2 50 0 1.12 GA chr1 40094912 40094952 trf 2 20.0 2 100 0 80 50 0 50 0 1.00 GA chr1 40095826 40095877 trf 4 12.8 4 100 0 102 25 23 0 50 1.49 TATC chr1 40096574 40096603 trf 4 7.2 4 100 0 58 75 24 0 0 0.80 AAAC chr1 40102188 40102261 trf 2 36.5 2 100 0 146 49 0 0 50 1.00 TA chr1 40111393 40111419 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 40121129 40121240 trf 7 15.0 7 71 10 62 49 2 3 44 1.34 ATATATA chr1 40121605 40121658 trf 2 26.5 2 100 0 106 50 0 49 0 1.00 AG chr1 40125254 40125286 trf 5 6.4 5 92 0 55 3 0 78 18 0.89 GGGGT chr1 40126228 40126254 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 40126366 40126476 trf 12 9.7 12 68 15 56 42 31 8 17 1.78 ACACACATGCAC chr1 40126675 40126763 trf 6 14.7 6 98 0 167 17 14 18 50 1.79 ATGTCT chr1 40127487 40127555 trf 4 17.0 4 100 0 136 0 50 0 50 1.00 CTTC chr1 40132495 40132648 trf 6 25.3 6 91 6 229 0 70 0 29 0.87 TCTCCC chr1 40135509 40135676 trf 4 41.8 4 86 0 199 25 43 2 29 1.67 ATCC chr1 40138250 40138309 trf 3 19.7 3 75 6 57 3 57 1 37 1.25 TCC chr1 40138343 40138429 trf 5 17.2 5 100 0 172 0 39 0 60 0.97 TCTCT chr1 40138783 40138828 trf 4 11.2 4 80 0 54 26 0 24 48 1.51 TATG chr1 40139094 40139134 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 AT chr1 40141745 40141853 trf 6 18.0 6 100 0 216 33 0 66 0 0.92 AGAGGG chr1 40141746 40141893 trf 6 24.5 6 91 0 87 29 0 68 2 1.01 GAGGGG chr1 40145311 40145336 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 40149045 40149114 trf 12 5.4 12 78 13 75 50 27 13 8 1.70 ACATACACAGAG chr1 40149657 40149834 trf 5 37.8 5 97 2 254 0 42 0 57 0.99 CTTCT chr1 40150762 40150960 trf 8 23.9 8 67 16 82 47 16 2 33 1.58 ATATATAC chr1 40150818 40150927 trf 10 10.5 10 71 14 78 47 15 2 33 1.60 ATATATACAT chr1 40151265 40151316 trf 4 12.8 4 100 0 102 0 49 0 50 1.00 CTTC chr1 40151316 40151382 trf 2 33.0 2 96 0 123 0 51 0 48 1.00 TC chr1 40151780 40151844 trf 12 5.8 12 77 17 59 39 32 10 17 1.84 CACATGCATACA chr1 40155916 40155951 trf 1 35.0 1 94 0 61 0 2 0 97 0.19 T chr1 40170366 40170405 trf 2 19.5 2 94 0 69 0 0 46 53 1.00 TG chr1 40170505 40170530 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 40182348 40182379 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 40182986 40183030 trf 1 44.0 1 81 0 52 0 0 9 90 0.44 T chr1 40183074 40183140 trf 2 33.0 2 96 0 114 0 46 0 53 1.00 CT chr1 40183283 40183376 trf 4 24.2 4 80 8 95 50 26 20 2 1.59 AGAC chr1 40183302 40183404 trf 8 12.8 8 88 0 87 50 34 14 0 1.50 CACACAGA chr1 40183309 40183407 trf 12 8.2 12 89 0 97 50 35 13 1 1.48 ACAGACACACAC chr1 40183373 40183407 trf 4 8.5 4 100 0 68 50 50 0 0 1.00 ACAC chr1 40184624 40184664 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 40186786 40186824 trf 7 5.7 7 84 9 53 0 13 0 86 0.56 TTTTTCT chr1 40186786 40186822 trf 12 2.8 13 91 8 56 0 13 0 86 0.58 TTTTTCTTTTCTT chr1 40187024 40187109 trf 3 28.3 3 100 0 170 0 34 0 65 0.93 CTT chr1 40188587 40188622 trf 6 5.8 6 89 0 52 5 0 60 34 1.21 GGGTTG chr1 40190285 40190318 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 40192851 40192890 trf 5 7.8 5 97 0 69 15 0 2 82 0.79 TTTTA chr1 40194047 40194109 trf 2 31.0 2 96 0 115 0 48 0 51 1.00 CT chr1 40205343 40205375 trf 10 3.3 10 91 8 57 90 0 9 0 0.45 AAAAAAAAAG chr1 40205344 40205375 trf 9 3.3 9 91 8 53 90 0 9 0 0.46 AAAAAAAAG chr1 40210244 40210343 trf 4 24.5 4 89 6 146 0 28 0 71 0.86 TCTT chr1 40212515 40212546 trf 7 4.3 7 95 4 53 0 12 0 87 0.55 TTTTTCT chr1 40213357 40213412 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 40215655 40215930 trf 8 35.0 8 73 15 146 47 18 3 30 1.65 TATACATA chr1 40215685 40215726 trf 11 4.0 11 81 18 52 41 26 4 26 1.76 CGTATACACAT chr1 40215720 40215759 trf 10 3.9 10 82 0 51 51 30 0 17 1.46 ACACATACAC chr1 40215754 40215940 trf 12 15.4 12 78 9 132 48 16 3 31 1.62 ATACATATATAC chr1 40215815 40215964 trf 8 18.6 8 87 0 154 49 22 1 26 1.58 ATACATAC chr1 40218489 40218573 trf 7 12.1 7 70 18 52 1 59 0 39 1.05 TTCCTCC chr1 40218499 40218564 trf 8 8.4 8 77 5 62 0 61 0 38 0.96 CCCTTCCT chr1 40218511 40218564 trf 12 4.5 12 78 2 63 0 64 0 35 0.94 CCTCCCTTCCTC chr1 40222313 40222452 trf 6 25.0 6 71 12 68 0 62 0 36 1.01 CTCCTC chr1 40222314 40222388 trf 9 9.0 9 73 18 72 1 56 0 41 1.07 TCCTCCTCT chr1 40223768 40223793 trf 11 2.3 11 100 0 50 36 32 16 16 1.90 ACCCTTAGGAA chr1 40225937 40225979 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 40226205 40226259 trf 3 16.7 3 85 14 72 70 29 0 0 0.88 AAC chr1 40226208 40226256 trf 7 7.1 7 93 6 82 70 29 0 0 0.87 AACAACA chr1 40230760 40230831 trf 2 37.0 2 72 8 58 4 4 43 47 1.42 TG chr1 40234297 40234331 trf 10 3.6 9 88 11 50 85 14 0 0 0.60 AAAAACAAA chr1 40244076 40244127 trf 2 25.5 2 100 0 102 49 0 0 50 1.00 TA chr1 40244891 40245049 trf 4 39.5 4 97 0 145 0 36 0 63 0.95 TTTC chr1 40244990 40245028 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 CT chr1 40247054 40247099 trf 8 5.6 8 83 0 63 13 22 28 35 1.92 CTGTGATC chr1 40251006 40251197 trf 2 95.5 2 87 0 247 49 42 6 1 1.36 CA chr1 40252825 40252856 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 40255822 40255863 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 40258367 40258773 trf 10 42.3 10 85 12 424 0 48 0 51 1.02 TCTCCTTTCC chr1 40258369 40258761 trf 5 75.6 5 84 6 325 0 48 0 51 1.00 TCCTT chr1 40262444 40262505 trf 2 30.5 2 93 0 104 50 47 0 1 1.10 CA chr1 40263072 40263114 trf 6 6.8 6 86 2 57 78 14 4 2 1.01 AAAACA chr1 40267042 40267074 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 40272664 40272752 trf 2 44.5 2 88 2 133 50 45 3 1 1.26 AC chr1 40272899 40273067 trf 11 14.9 11 65 20 62 48 1 23 26 1.58 AGATAGATGAT chr1 40273042 40273067 trf 12 2.1 12 100 0 50 52 0 24 24 1.48 AATAGATAGATG chr1 40277717 40277791 trf 2 36.5 2 89 2 103 6 0 44 48 1.29 TG chr1 40283427 40283650 trf 3 72.0 3 72 7 88 23 61 1 13 1.39 CCA chr1 40284359 40284413 trf 2 27.0 2 100 0 108 0 0 50 50 1.00 TG chr1 40285473 40285603 trf 6 21.7 6 100 0 260 0 49 16 33 1.47 TCTGCC chr1 40286384 40286426 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 40287371 40287434 trf 9 7.4 9 74 25 57 1 46 0 52 1.10 TCTTCTTCC chr1 40287871 40287913 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 40298485 40298565 trf 7 11.7 7 90 5 119 28 0 71 0 0.87 GAGAGGG chr1 40298498 40298707 trf 5 41.2 5 84 7 230 39 0 60 0 1.01 GGAGA chr1 40298539 40298707 trf 8 19.1 10 72 24 148 42 0 57 0 1.03 GAGAGAGAGA chr1 40301289 40301333 trf 2 22.0 2 95 0 79 2 0 50 47 1.13 GT chr1 40301835 40301935 trf 12 8.2 12 69 16 53 23 3 43 31 1.69 GAGTGTGTGAGA chr1 40301972 40302012 trf 2 21.0 2 90 10 66 47 0 52 0 1.00 GA chr1 40302691 40302806 trf 3 39.0 3 85 3 117 0 56 1 41 1.09 CTC chr1 40309804 40309831 trf 4 6.8 4 100 0 54 51 0 22 25 1.48 AATG chr1 40314815 40314848 trf 11 3.0 11 95 0 57 30 27 9 33 1.88 TACTCAGTACT chr1 40318704 40318762 trf 2 29.0 2 96 0 107 51 0 48 0 1.00 GA chr1 40319172 40319235 trf 2 32.0 2 96 3 119 49 0 50 0 1.00 GA chr1 40322982 40323072 trf 2 45.0 2 93 0 153 0 53 0 46 1.00 TC chr1 40327310 40327351 trf 5 8.2 5 100 0 82 19 0 0 80 0.71 TTTAT chr1 40329172 40329211 trf 5 7.4 5 88 5 51 61 38 0 0 0.96 AAACC chr1 40329469 40329562 trf 10 9.3 10 89 0 141 0 52 0 47 1.00 TCTCTCTCTC chr1 40329469 40329562 trf 4 23.2 4 95 0 141 0 52 0 47 1.00 TCTC chr1 40332004 40332080 trf 4 19.8 4 81 10 79 2 22 2 72 1.10 TTTC chr1 40334128 40334168 trf 7 6.0 7 97 2 66 0 0 10 90 0.47 GTTTTTT chr1 40334129 40334171 trf 1 42.0 1 85 0 57 0 0 7 92 0.37 T chr1 40335999 40336145 trf 4 36.5 4 98 0 184 0 32 0 67 0.91 TTTC chr1 40340599 40340633 trf 12 2.8 12 86 0 50 61 0 38 0 0.96 AAGGAAGAAAGG chr1 40340985 40341360 trf 2 191.5 2 70 9 155 47 39 3 9 1.52 AC chr1 40341860 40341905 trf 2 22.5 2 100 0 90 0 48 0 51 1.00 TC chr1 40341904 40341930 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 40341982 40342049 trf 2 33.5 2 96 0 125 50 47 1 0 1.10 AC chr1 40342048 40342092 trf 2 22.0 2 95 0 79 52 0 47 0 1.00 AG chr1 40342505 40342560 trf 12 4.6 12 90 0 74 23 41 3 30 1.72 ATCTATCCATCC chr1 40342510 40342556 trf 4 11.5 4 90 0 74 23 45 2 28 1.65 TCCA chr1 40344213 40344344 trf 3 43.7 3 98 0 253 0 32 0 67 0.91 CTT chr1 40344342 40344581 trf 6 40.0 6 90 5 195 1 66 0 31 0.99 CTCCTC chr1 40344579 40344652 trf 3 24.3 3 94 0 128 0 32 2 64 1.08 TCT chr1 40347818 40347864 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 40348049 40348096 trf 5 9.4 5 100 0 94 80 0 0 19 0.70 AAAAT chr1 40348153 40348188 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 40353675 40353787 trf 8 14.2 8 83 3 129 50 7 41 0 1.29 GAGAGAGA chr1 40353675 40353787 trf 6 19.0 6 87 3 129 50 7 41 0 1.29 GAGAGA chr1 40353908 40353956 trf 8 6.0 8 87 0 60 0 0 33 66 0.92 GGTTGTTT chr1 40353909 40353956 trf 4 12.0 4 86 4 51 0 0 31 68 0.90 GTTT chr1 40353914 40353956 trf 12 3.5 12 83 0 57 0 0 33 66 0.92 TTGTTTGTTTGG chr1 40360560 40360635 trf 2 37.5 2 91 0 123 0 4 49 46 1.20 GT chr1 40362093 40362132 trf 12 3.2 12 81 0 51 61 30 7 0 1.24 CAACAGCAACAA chr1 40370820 40370847 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 40372422 40372466 trf 4 11.0 4 95 0 79 22 0 27 50 1.50 TATG chr1 40374113 40374362 trf 2 124.5 2 78 3 169 42 44 6 6 1.54 CA chr1 40374816 40374875 trf 4 14.8 4 96 0 109 23 23 1 50 1.58 TATC chr1 40386725 40386817 trf 2 45.5 2 80 2 103 50 41 4 4 1.42 AC chr1 40389406 40389465 trf 2 29.5 2 92 0 100 3 0 49 47 1.18 GT chr1 40390140 40390201 trf 2 30.5 2 93 0 104 3 0 45 50 1.17 TG chr1 40390217 40390242 trf 12 2.1 12 100 0 50 52 40 0 8 1.31 ATACACACACAC chr1 40390249 40390284 trf 12 2.9 12 95 0 61 51 25 0 22 1.48 ATATATACACAC chr1 40394814 40395046 trf 6 38.7 6 98 0 320 38 0 61 0 0.96 GAGAGG chr1 40396494 40396541 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 40399644 40399672 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 40405654 40405685 trf 1 31.0 1 100 0 62 0 0 0 100 0.00 T chr1 40407815 40407852 trf 3 12.3 3 94 0 65 35 35 29 0 1.58 CAG chr1 40408172 40408225 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 40409924 40409959 trf 1 35.0 1 88 0 52 0 0 5 94 0.32 T chr1 40419549 40419585 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 CT chr1 40420048 40420083 trf 5 7.0 5 93 0 52 74 20 0 5 1.02 AACAA chr1 40421229 40421335 trf 6 17.7 6 100 0 212 0 16 33 50 1.46 CTGTGT chr1 40421328 40421353 trf 4 6.2 4 100 0 50 0 24 24 52 1.48 TGTC chr1 40422036 40422061 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 40423570 40423610 trf 2 20.0 2 89 0 62 55 0 0 45 0.99 AT chr1 40424514 40424685 trf 5 34.2 5 98 0 234 0 67 0 32 0.91 CCTCT chr1 40425257 40425298 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 40425756 40425792 trf 1 36.0 1 94 0 63 0 2 0 97 0.18 T chr1 40431201 40431245 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 40440335 40440377 trf 7 6.0 7 86 10 59 2 0 11 85 0.68 GTTTTTT chr1 40443080 40443118 trf 3 12.7 3 94 0 67 0 63 0 36 0.95 CTC chr1 40446235 40446313 trf 4 19.5 4 94 5 140 26 24 0 48 1.51 ATCT chr1 40451439 40451497 trf 4 14.5 4 100 0 116 51 48 0 0 1.00 AACC chr1 40459413 40459441 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 40459473 40459590 trf 10 11.6 10 71 18 75 43 35 6 13 1.71 CACACACATG chr1 40459627 40459666 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 40460356 40460399 trf 6 7.0 6 82 12 52 0 0 23 76 0.78 GTTTTT chr1 40466371 40466417 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 GT chr1 40466797 40466856 trf 2 29.5 2 96 0 109 50 49 0 0 1.00 CA chr1 40467582 40467608 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 40470927 40470961 trf 2 17.5 2 87 6 52 52 47 0 0 1.00 CA chr1 40471286 40471352 trf 2 33.0 2 84 6 89 46 46 1 4 1.32 AC chr1 40475113 40475272 trf 12 13.0 12 73 9 106 39 5 10 44 1.61 TATATGTATATA chr1 40475115 40475147 trf 4 7.8 4 93 6 55 25 0 25 50 1.50 TATG chr1 40475144 40475272 trf 4 32.0 4 77 0 103 42 6 7 43 1.56 TATA chr1 40475561 40475649 trf 4 22.0 4 82 0 68 37 2 60 0 1.10 AGAG chr1 40475566 40475649 trf 8 10.4 8 90 0 94 37 2 60 0 1.10 GAGAGGGA chr1 40477377 40477417 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 40480574 40480674 trf 2 50.0 2 93 0 173 0 49 2 49 1.12 CT chr1 40482250 40482440 trf 3 63.3 3 98 0 173 0 54 0 45 0.99 CCT chr1 40482438 40482504 trf 3 22.0 3 100 0 132 0 33 0 66 0.92 TCT chr1 40485481 40485781 trf 9 34.1 9 92 4 506 34 32 11 21 1.89 GCACACTAT chr1 40488761 40488948 trf 2 94.5 2 88 2 279 48 2 48 1 1.23 GA chr1 40491496 40491536 trf 2 20.0 2 90 10 64 47 50 0 2 1.14 AC chr1 40491773 40491806 trf 2 17.0 2 93 6 59 0 0 51 48 1.00 TG chr1 40492111 40492140 trf 4 7.2 4 100 0 58 0 24 24 51 1.48 TGTC chr1 40492183 40492227 trf 4 11.0 4 85 0 61 2 29 25 43 1.67 TCTG chr1 40492183 40492258 trf 8 9.4 8 79 5 71 2 30 25 41 1.69 TCTGCCTG chr1 40492188 40492235 trf 12 3.9 12 88 0 58 2 31 25 40 1.68 CTGTCTGCCTGT chr1 40495152 40495200 trf 2 24.0 2 95 0 87 0 0 47 52 1.00 GT chr1 40495519 40495568 trf 2 24.5 2 95 0 89 0 51 0 48 1.00 TC chr1 40496325 40496489 trf 12 14.0 12 64 23 57 49 1 47 1 1.20 AGGAAGAGAGGA chr1 40496623 40496657 trf 12 2.8 12 86 0 50 55 0 44 0 0.99 GAAGGAGGAAAA chr1 40496865 40497088 trf 9 24.0 9 69 20 72 50 0 48 0 1.04 AAGGAGGAA chr1 40497193 40497229 trf 9 4.0 9 85 0 54 44 0 55 0 0.99 GAGGAAGAG chr1 40500059 40500210 trf 10 14.7 10 74 16 51 55 34 2 7 1.41 ACACACATAA chr1 40500132 40500220 trf 10 8.9 10 87 1 106 52 42 1 4 1.29 CACACACACA chr1 40500132 40500220 trf 4 22.2 4 85 2 106 52 42 1 4 1.29 CACA chr1 40500347 40500408 trf 2 30.5 2 89 0 95 0 4 44 50 1.23 TG chr1 40514775 40514805 trf 4 7.5 4 92 0 51 23 3 0 73 0.98 TTTA chr1 40517641 40517671 trf 3 9.7 3 92 7 51 70 30 0 0 0.88 AAC chr1 40518255 40518282 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 40518906 40518964 trf 4 13.5 4 75 13 53 43 6 1 48 1.40 TTAA chr1 40519005 40519417 trf 4 102.5 4 88 4 319 0 36 0 63 0.99 CTTT chr1 40519243 40519277 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 40519407 40519454 trf 4 11.8 4 90 0 76 0 48 0 51 1.00 CTTC chr1 40523130 40523156 trf 10 2.6 10 100 0 52 7 26 30 34 1.85 TGCTGTGCAC chr1 40536671 40536718 trf 4 11.8 4 95 0 58 68 0 31 0 0.90 AAAG chr1 40538028 40538095 trf 4 16.8 4 87 0 98 25 46 0 28 1.53 CATC chr1 40538779 40538823 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 40541278 40541319 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 40541279 40541327 trf 10 4.7 11 94 5 68 2 0 50 47 1.12 GTGTGTGTGTA chr1 40541313 40541341 trf 8 3.5 8 100 0 56 10 0 50 39 1.37 GTGTGTAG chr1 40543439 40543496 trf 12 4.8 12 78 8 53 3 33 0 63 1.12 TTCTCTTCTTCT chr1 40543591 40543654 trf 3 20.7 3 84 9 65 0 57 0 42 0.99 CTC chr1 40544489 40544560 trf 2 35.5 2 94 0 124 52 47 0 0 1.00 CA chr1 40555516 40555577 trf 2 30.5 2 86 0 86 45 4 47 1 1.34 GA chr1 40559326 40559391 trf 2 33.5 2 80 6 62 44 1 7 46 1.41 AT chr1 40562249 40562293 trf 3 14.7 3 100 0 88 0 65 0 34 0.93 TCC chr1 40562291 40562397 trf 3 35.3 3 92 0 176 0 33 1 65 1.04 TCT chr1 40564572 40564690 trf 8 14.5 8 76 3 83 11 3 34 50 1.54 TGTGTATG chr1 40564572 40564690 trf 2 59.0 2 73 0 56 11 3 34 50 1.54 TG chr1 40564574 40564690 trf 12 10.5 12 73 20 67 11 3 34 50 1.55 TGTGTGTATGTA chr1 40564609 40564669 trf 10 6.0 10 81 14 70 15 1 30 53 1.51 ATGTGTGTAT chr1 40565403 40565514 trf 12 9.6 12 85 2 95 4 9 45 39 1.58 ATGTGTGTGTGC chr1 40565404 40565454 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 40574446 40574477 trf 4 7.8 4 100 0 62 51 22 0 25 1.48 AATC chr1 40578359 40578399 trf 4 10.0 4 100 0 80 25 0 0 75 0.81 ATTT chr1 40579388 40579426 trf 3 13.0 3 83 5 51 0 63 0 36 0.95 CTC chr1 40579392 40579429 trf 12 3.1 12 85 14 58 0 59 0 40 0.97 CCTCCTCCTCTT chr1 40584644 40584673 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 40585149 40585199 trf 8 6.5 8 79 9 59 24 28 22 26 1.99 CTGCATAG chr1 40586511 40586562 trf 2 25.5 2 100 0 102 49 0 50 0 1.00 GA chr1 40587725 40588017 trf 12 24.3 12 79 6 254 11 36 20 30 1.89 GTGCTCAGCTCT chr1 40591398 40591516 trf 6 20.0 6 73 10 64 30 3 20 45 1.67 ATGTAT chr1 40591652 40591714 trf 2 31.0 2 100 0 124 0 50 0 50 1.00 CT chr1 40593462 40593504 trf 4 10.5 4 100 0 84 23 50 0 26 1.50 TCCA chr1 40595388 40595430 trf 6 6.8 6 87 12 59 85 14 0 0 0.59 AAAAAC chr1 40596739 40596779 trf 1 40.0 1 84 0 53 92 7 0 0 0.38 A chr1 40596740 40596792 trf 7 7.3 7 91 2 68 86 11 1 0 0.65 AAAAAAC chr1 40598314 40598344 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 40599288 40599355 trf 5 13.4 5 100 0 134 61 0 0 38 0.96 AATAT chr1 40601449 40601494 trf 3 15.0 3 95 0 81 64 0 2 33 1.06 TAA chr1 40601648 40601731 trf 7 12.3 7 72 12 66 37 54 1 7 1.36 CCACACA chr1 40603842 40603912 trf 2 35.0 2 94 0 122 0 52 0 47 1.00 TC chr1 40603911 40604000 trf 2 44.5 2 82 0 79 44 43 1 10 1.45 CA chr1 40604069 40604096 trf 4 6.8 4 100 0 54 48 0 0 51 1.00 ATTA chr1 40604394 40604422 trf 2 14.0 2 100 0 56 0 50 0 50 1.00 CT chr1 40604421 40604447 trf 2 13.0 2 100 0 52 50 0 0 50 1.00 TA chr1 40605238 40605281 trf 2 21.5 2 80 0 50 0 60 0 39 0.97 CT chr1 40605254 40605302 trf 4 12.2 4 86 4 62 0 70 0 29 0.87 CTCC chr1 40606460 40606811 trf 12 29.6 12 68 18 110 55 31 3 9 1.49 ACACACATACAA chr1 40606500 40606821 trf 6 53.7 6 69 4 92 54 32 3 9 1.50 ACACAC chr1 40606500 40606821 trf 4 80.5 4 70 4 92 54 32 3 9 1.50 ACAC chr1 40608663 40608697 trf 12 2.8 12 86 0 50 32 32 11 23 1.91 CATGCACACATT chr1 40610217 40610251 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 40611546 40611593 trf 2 24.0 2 95 4 87 0 0 51 48 1.00 GT chr1 40614144 40614188 trf 2 22.0 2 90 0 70 2 0 45 52 1.13 GT chr1 40614185 40614236 trf 4 13.8 4 80 15 65 0 27 21 50 1.48 TGTC chr1 40614191 40614232 trf 10 4.3 10 87 12 68 0 29 19 51 1.47 TCTGTCTGTC chr1 40627003 40627053 trf 2 25.0 2 91 0 82 4 0 46 50 1.20 GT chr1 40636027 40636052 trf 9 2.8 9 100 0 50 32 12 20 36 1.89 ATGCTATAG chr1 40641222 40641247 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 40641454 40641512 trf 2 29.0 2 96 0 107 0 51 0 48 1.00 CT chr1 40641511 40641536 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 40643144 40643198 trf 3 18.3 3 96 3 101 68 0 0 31 0.90 ATA chr1 40645631 40645662 trf 7 4.4 7 100 0 62 41 25 0 32 1.56 TATCACA chr1 40649333 40649366 trf 2 16.5 2 100 0 66 48 0 0 51 1.00 TA chr1 40651108 40651167 trf 2 29.5 2 96 0 109 0 0 47 52 1.00 TG chr1 40655978 40656009 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 40656644 40656712 trf 4 17.0 4 93 0 100 0 69 0 30 0.89 CCTC chr1 40658545 40658600 trf 2 27.0 2 81 17 60 1 5 43 49 1.36 TG chr1 40660900 40660951 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 40664390 40664465 trf 4 18.8 4 97 0 141 49 0 25 25 1.51 ATAG chr1 40667708 40667878 trf 6 28.3 6 100 0 340 0 66 0 33 0.92 CTCTCC chr1 40667987 40668082 trf 12 7.9 12 86 3 102 0 56 0 43 0.99 CTCTCTCTCTCC chr1 40668015 40668083 trf 6 11.3 6 96 0 118 0 52 0 47 1.00 CTCTCT chr1 40668278 40668306 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AAAC chr1 40670685 40670710 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 40672097 40672156 trf 6 9.8 6 92 0 100 3 16 28 50 1.61 TCTGTG chr1 40673334 40673407 trf 2 35.5 2 86 5 101 6 0 45 47 1.29 GT chr1 40673743 40673800 trf 4 13.8 4 80 7 60 24 22 3 49 1.66 TCAT chr1 40673758 40673804 trf 9 5.3 9 82 10 60 19 28 2 50 1.60 TTCATTCAC chr1 40674866 40674891 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 40674924 40674958 trf 12 2.6 13 86 13 52 14 5 38 41 1.70 TGTGTGCAATGTG chr1 40676817 40676877 trf 2 30.0 2 100 0 120 50 50 0 0 1.00 CA chr1 40676876 40676919 trf 2 21.5 2 100 0 86 51 0 48 0 1.00 AG chr1 40679321 40679362 trf 2 20.5 2 100 0 82 0 0 51 48 1.00 GT chr1 40684047 40684075 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 40686125 40686168 trf 3 14.0 3 90 4 68 34 2 0 62 1.08 TAT chr1 40686772 40686826 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 AC chr1 40688346 40688585 trf 6 39.7 6 82 0 262 50 40 8 1 1.41 CACACA chr1 40688346 40688585 trf 10 24.2 10 85 4 263 50 40 8 1 1.41 CACACAGACA chr1 40688346 40688585 trf 4 59.5 4 82 0 262 50 40 8 1 1.41 CACA chr1 40689672 40689704 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 40691000 40691052 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 40692041 40692067 trf 4 6.5 4 100 0 52 23 26 0 50 1.50 TCAT chr1 40692908 40692955 trf 5 9.4 5 97 0 85 36 0 23 40 1.55 GTATA chr1 40698220 40698246 trf 12 2.2 12 100 0 52 0 34 19 46 1.50 GCTTGCTCTCTT chr1 40702330 40702356 trf 12 2.2 12 100 0 52 0 34 19 46 1.50 GCTTGCTCTCTT chr1 40707362 40707397 trf 4 8.8 4 100 0 70 74 0 0 25 0.82 AATA chr1 40707672 40707730 trf 4 14.5 4 100 0 116 0 50 0 50 1.00 TCCT chr1 40707727 40707791 trf 4 16.0 4 100 0 128 0 25 0 75 0.81 TTCT chr1 40712793 40712849 trf 2 28.0 2 81 0 67 5 3 44 46 1.43 GT chr1 40715917 40715949 trf 2 16.0 2 93 0 55 50 46 0 3 1.17 CA chr1 40718002 40718032 trf 3 9.7 3 92 7 51 66 30 0 3 1.07 AAC chr1 40720109 40720167 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 AT chr1 40720644 40720680 trf 1 36.0 1 100 0 72 0 0 0 100 0.00 T chr1 40721240 40721277 trf 12 3.0 12 92 7 65 27 16 32 24 1.96 GTGTGCAAATGC chr1 40721958 40722006 trf 12 3.9 12 86 10 62 75 0 4 20 0.97 AAAATAATAAAT chr1 40724699 40725128 trf 2 215.5 2 89 0 664 49 45 4 0 1.24 AC chr1 40725853 40725920 trf 2 34.0 2 84 3 91 1 0 44 53 1.09 TG chr1 40729368 40729417 trf 2 24.5 2 100 0 98 0 48 0 51 1.00 TC chr1 40740304 40740433 trf 6 20.8 6 93 6 222 33 0 66 0 0.92 GAGAGG chr1 40742908 40743066 trf 12 12.9 13 88 8 115 3 32 1 62 1.21 TCTTCTGTCTTCA chr1 40742927 40743066 trf 3 47.3 3 87 7 205 2 34 0 62 1.10 CTT chr1 40742971 40743182 trf 6 35.3 6 74 13 69 0 48 0 50 1.04 CTTCTC chr1 40743064 40743265 trf 12 16.2 12 66 17 74 0 56 0 42 1.07 TCCTCCTTCTCC chr1 40743064 40743250 trf 3 63.7 3 64 15 59 0 57 0 41 1.07 TCC chr1 40745063 40745107 trf 3 14.7 3 100 0 88 31 0 68 0 0.90 GGA chr1 40750086 40750145 trf 4 14.8 4 100 0 118 74 0 25 0 0.82 AGAA chr1 40750144 40750177 trf 12 2.8 12 95 0 57 54 0 45 0 0.99 AGAGAGGAAGGA chr1 40750443 40750514 trf 9 8.2 9 72 9 58 49 0 50 0 1.00 GAGGAAGAA chr1 40750464 40750547 trf 12 7.0 12 76 10 66 46 0 53 0 1.00 GAAGAGGGAGAA chr1 40751531 40751600 trf 5 12.8 5 77 13 66 81 18 0 0 0.70 AAAAC chr1 40751547 40751590 trf 7 6.3 7 84 10 54 86 13 0 0 0.58 AAAACAA chr1 40751633 40751667 trf 3 11.7 3 93 6 61 70 29 0 0 0.87 AAC chr1 40753147 40753198 trf 8 6.2 8 78 13 50 52 0 0 47 1.00 ATATAAAT chr1 40757091 40757131 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 40757141 40757215 trf 5 13.8 5 82 10 76 1 1 20 77 0.92 TTTTG chr1 40757141 40757217 trf 11 7.0 11 79 8 84 1 1 21 76 0.94 TTTTGTTTTTG chr1 40757157 40757217 trf 6 10.7 6 85 7 65 1 1 18 78 0.92 TTTGTT chr1 40758998 40759032 trf 3 11.3 3 93 0 59 38 32 29 0 1.58 AGC chr1 40762534 40762564 trf 3 10.0 3 100 0 60 66 0 0 33 0.92 ATA chr1 40766805 40766882 trf 4 18.8 4 72 17 52 2 1 23 72 1.04 TTTG chr1 40779558 40779598 trf 10 4.2 9 81 12 53 0 0 27 72 0.85 TTGTTGTTT chr1 40782205 40782326 trf 10 9.9 12 88 10 78 0 68 0 31 0.90 CTCTCCCCTCTC chr1 40782209 40782325 trf 3 43.0 3 79 20 141 0 69 0 30 0.88 CTC chr1 40782335 40782533 trf 2 100.5 2 73 14 126 5 40 4 50 1.45 TC chr1 40782913 40782941 trf 4 7.0 4 100 0 56 75 25 0 0 0.81 AAAC chr1 40786856 40786893 trf 12 3.2 12 85 7 51 40 5 10 43 1.63 ATATATGTATAC chr1 40792001 40792048 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 40792919 40792983 trf 2 32.0 2 93 0 110 1 46 1 50 1.20 TC chr1 40794042 40794069 trf 11 2.5 11 100 0 54 18 7 11 62 1.50 TTGATTCTTTA chr1 40794455 40794724 trf 6 44.8 6 98 0 295 55 0 44 0 0.99 AGAAGG chr1 40794722 40794749 trf 3 9.0 3 100 0 54 33 33 33 0 1.58 AGC chr1 40800576 40800642 trf 4 16.5 4 90 6 107 50 0 22 27 1.50 ATAG chr1 40811247 40811349 trf 10 9.9 10 70 16 57 2 68 0 27 1.10 CCCCTCCCTC chr1 40811424 40811476 trf 12 3.8 13 80 15 52 1 57 1 38 1.21 CCCTTCTCCTTCC chr1 40817618 40817804 trf 2 93.5 2 80 1 194 51 39 2 7 1.42 AC chr1 40821538 40821580 trf 3 14.0 3 89 0 66 30 2 0 66 1.04 TTA chr1 40830008 40830074 trf 2 33.0 2 87 0 96 46 46 4 1 1.32 CA chr1 40830160 40830226 trf 2 33.0 2 93 0 114 46 50 3 0 1.16 CA chr1 40835199 40835248 trf 2 24.5 2 100 0 98 0 0 51 48 1.00 GT chr1 40835763 40835804 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 40843789 40843850 trf 2 30.5 2 100 0 122 0 49 0 50 1.00 TC chr1 40845243 40845302 trf 9 6.6 9 84 0 73 16 0 49 33 1.47 TGATGGTGG chr1 40847566 40847611 trf 1 45.0 1 86 0 63 93 0 6 0 0.35 A chr1 40848887 40849121 trf 9 26.1 9 81 12 277 34 0 64 0 1.00 GGAGAGGGA chr1 40850040 40850079 trf 3 13.0 3 100 0 78 33 33 0 33 1.58 CAT chr1 40857660 40857700 trf 2 20.0 2 89 0 62 2 2 47 47 1.29 TG chr1 40857699 40857793 trf 2 48.0 2 79 4 93 50 5 44 0 1.24 GA chr1 40865792 40865826 trf 11 3.1 11 82 0 50 11 0 29 58 1.33 TTATGTGTGTA chr1 40865935 40865977 trf 10 4.1 11 79 14 54 16 0 28 54 1.42 TATGTGTGTAT chr1 40869837 40869880 trf 12 3.4 12 83 6 50 44 37 6 11 1.68 ACACACACATGA chr1 40871071 40871096 trf 12 2.1 12 100 0 50 36 0 56 8 1.29 ATGGGGGAGAAG chr1 40871859 40871897 trf 2 19.0 2 94 0 67 2 0 47 50 1.15 TG chr1 40871896 40871928 trf 2 16.0 2 100 0 64 50 0 50 0 1.00 GA chr1 40873636 40873792 trf 6 26.8 6 68 18 64 49 0 50 0 1.00 GGAAGA chr1 40873640 40873757 trf 3 38.3 3 72 3 72 47 0 52 0 1.00 AGG chr1 40875922 40875970 trf 5 9.6 5 90 0 78 25 0 75 0 0.81 GAGGG chr1 40877426 40877470 trf 9 4.9 9 85 0 52 31 56 2 9 1.43 CACCATCAC chr1 40877444 40877486 trf 9 4.7 9 84 0 57 30 45 2 21 1.65 CACCATCAT chr1 40878043 40878080 trf 2 18.5 2 94 0 65 54 45 0 0 1.00 AC chr1 40878961 40878998 trf 6 6.0 6 93 6 65 0 18 0 81 0.70 TCTTTT chr1 40879874 40879914 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 CA chr1 40880039 40880140 trf 10 10.7 10 70 19 56 4 12 44 37 1.65 GTGTGTGCGC chr1 40880086 40880148 trf 2 30.0 2 83 6 70 1 8 46 43 1.42 TG chr1 40882105 40882170 trf 4 16.2 4 100 0 130 0 24 0 75 0.81 TTCT chr1 40882165 40882522 trf 6 58.7 6 91 4 439 0 50 0 49 1.00 TTCTCC chr1 40882462 40882528 trf 3 20.7 3 73 11 51 0 42 0 57 0.98 TCT chr1 40883651 40883696 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 40884698 40884728 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 40885337 40885489 trf 6 25.3 6 98 0 295 0 65 0 34 0.93 CTCCCT chr1 40885497 40885549 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 AT chr1 40886777 40886813 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 40887245 40887293 trf 4 11.8 4 91 4 60 50 18 0 31 1.48 ATAC chr1 40889115 40889156 trf 3 13.7 3 85 10 57 60 0 0 39 0.96 TAA chr1 40891641 40891680 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 40894789 40894836 trf 6 7.8 6 97 0 67 51 8 0 40 1.33 ATATAC chr1 40894789 40894837 trf 2 24.0 2 82 0 60 50 8 0 41 1.33 AT chr1 40897049 40897090 trf 2 21.5 2 80 9 50 51 0 2 46 1.14 AT chr1 40899643 40899691 trf 2 24.5 2 95 4 89 50 50 0 0 1.00 AC chr1 40903321 40903364 trf 2 21.5 2 100 0 86 0 51 0 48 1.00 CT chr1 40903552 40903664 trf 6 19.2 6 80 15 101 0 57 0 41 1.05 CTCCTT chr1 40903562 40903632 trf 9 7.8 9 78 0 68 0 54 0 45 0.99 TCCTCCTCC chr1 40903754 40903800 trf 12 3.7 12 77 11 56 47 10 2 39 1.51 ATATATATACAT chr1 40905359 40905458 trf 2 50.0 2 87 2 137 49 6 0 44 1.27 AT chr1 40906284 40906418 trf 9 15.4 9 79 16 142 0 47 0 52 1.00 CTCTCTTCT chr1 40906284 40906416 trf 11 12.9 11 79 18 144 0 47 0 52 1.00 CTCTCTCTCTT chr1 40906284 40906418 trf 2 72.0 2 80 14 162 0 47 0 52 1.00 CT chr1 40909388 40909413 trf 5 5.0 5 100 0 50 0 0 20 80 0.72 GTTTT chr1 40909527 40909553 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 40909872 40909948 trf 2 38.0 2 83 0 89 6 2 44 46 1.43 TG chr1 40912411 40912438 trf 6 4.5 6 100 0 54 14 18 14 51 1.76 TCTTGA chr1 40914532 40914561 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 40919747 40919786 trf 2 19.5 2 100 0 78 0 48 0 51 1.00 TC chr1 40919785 40919818 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 40920105 40920153 trf 2 24.0 2 95 0 87 2 47 0 50 1.12 TC chr1 40921765 40921806 trf 7 6.0 7 88 5 66 87 12 0 0 0.53 AAAAAAC chr1 40928005 40928092 trf 3 29.0 3 100 0 174 33 33 33 0 1.58 CAG chr1 40932590 40932616 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 40944433 40944468 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 40944467 40944525 trf 2 29.0 2 92 0 98 46 0 53 0 1.00 AG chr1 40946707 40946737 trf 1 30.0 1 93 0 51 96 0 3 0 0.21 A chr1 40948868 40948904 trf 8 4.6 8 89 3 56 0 36 11 52 1.37 GCTCTCTT chr1 40952918 40953072 trf 4 38.5 4 94 0 245 70 0 29 0 0.87 AAAG chr1 40955890 40955920 trf 2 15.0 2 100 0 60 50 0 0 50 1.00 AT chr1 40955919 40955980 trf 2 30.5 2 96 0 113 1 0 47 50 1.10 TG chr1 40957606 40957681 trf 2 37.5 2 97 0 141 50 1 0 48 1.09 AT chr1 40959922 40960011 trf 4 22.2 4 90 0 142 0 44 0 55 0.99 TTCC chr1 40960008 40960068 trf 4 15.0 4 100 0 120 0 75 0 25 0.81 CCTC chr1 40960074 40960115 trf 4 10.2 4 100 0 82 0 24 0 75 0.80 TCTT chr1 40961102 40961145 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 40961373 40961399 trf 12 2.2 12 100 0 52 15 26 30 26 1.96 CTGGATAGCTGC chr1 40962613 40962653 trf 6 6.7 6 94 0 71 82 0 0 17 0.67 AAAATA chr1 40962924 40962989 trf 2 32.0 2 81 9 78 46 4 3 46 1.39 AT chr1 40963322 40963363 trf 11 3.6 11 84 12 57 19 78 0 2 0.87 ACCCCCACCCC chr1 40970655 40970700 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 40974113 40974144 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 40974391 40974435 trf 7 6.3 7 100 0 88 56 15 13 13 1.67 ACATAGA chr1 40977620 40977669 trf 2 24.5 2 91 0 71 2 4 46 46 1.33 TG chr1 40979867 40979908 trf 9 4.6 9 88 11 66 78 21 0 0 0.76 CAAAACAAA chr1 40979867 40979908 trf 5 9.0 5 89 10 54 78 21 0 0 0.76 CAAAA chr1 40983532 40983586 trf 4 13.8 4 92 3 92 25 22 1 50 1.59 TATC chr1 40983631 40983704 trf 2 36.5 2 91 0 119 46 1 2 49 1.24 TA chr1 40985228 40985258 trf 12 2.5 12 94 0 51 0 6 43 50 1.28 TCTGTGTGTGTG chr1 40987261 40987456 trf 8 25.1 8 66 15 63 3 30 16 49 1.63 TCTCTGTC chr1 40987269 40987512 trf 6 38.8 6 67 14 53 3 28 18 48 1.65 TCTCTG chr1 40987387 40987490 trf 10 9.9 10 73 12 73 1 24 23 50 1.59 TCTGTCTGTG chr1 40987445 40987496 trf 4 13.8 4 76 15 56 1 19 27 50 1.58 TCTG chr1 40989498 40989541 trf 2 21.5 2 95 0 77 48 48 0 2 1.14 CA chr1 40990809 40990839 trf 12 2.5 12 94 0 51 36 0 63 0 0.95 GGGAGAAGAAGG chr1 41001629 41001678 trf 2 24.5 2 100 0 98 48 0 51 0 1.00 GA chr1 41004281 41004335 trf 4 13.5 4 100 0 108 24 25 0 50 1.50 CTAT chr1 41004799 41004898 trf 4 25.2 4 89 4 148 50 0 22 27 1.49 ATAG chr1 41006067 41006116 trf 4 12.8 4 87 8 75 22 2 0 75 0.90 TTTA chr1 41015971 41016036 trf 5 14.0 5 81 15 86 60 20 0 20 1.37 AAACT chr1 41017805 41017896 trf 2 45.5 2 93 0 155 50 46 0 3 1.17 AC chr1 41018680 41018747 trf 11 6.2 10 80 13 55 0 0 19 80 0.71 TTGTTTTTTT chr1 41018680 41018716 trf 4 9.8 4 82 17 51 0 0 19 80 0.71 TTGT chr1 41018685 41018746 trf 5 12.8 5 80 19 53 0 0 19 80 0.72 TTTTG chr1 41023424 41023471 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 41023995 41024061 trf 4 16.5 4 90 0 105 28 1 21 48 1.59 ATGT chr1 41026446 41026506 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 GA chr1 41030621 41030737 trf 4 29.0 4 96 0 169 68 0 31 0 0.89 AAGA chr1 41036104 41036172 trf 4 17.0 4 100 0 136 0 25 0 75 0.81 TCTT chr1 41036169 41036233 trf 4 16.0 4 100 0 128 0 50 0 50 1.00 CTTC chr1 41038778 41038926 trf 2 76.0 2 84 5 178 47 2 3 46 1.33 AT chr1 41039880 41039922 trf 2 21.0 2 95 0 75 2 50 0 47 1.14 TC chr1 41040774 41040822 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 TG chr1 41046025 41046059 trf 2 17.0 2 93 0 59 50 2 0 47 1.16 TA chr1 41046423 41046487 trf 5 12.0 5 90 9 92 76 23 0 0 0.79 CAAAA chr1 41049809 41049889 trf 3 26.7 3 97 0 151 35 33 31 0 1.58 ACG chr1 41051772 41051823 trf 7 6.9 8 82 10 56 80 19 0 0 0.71 AAAAACCA chr1 41057238 41057264 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 41057883 41057966 trf 2 40.5 2 80 4 94 3 6 42 48 1.45 TG chr1 41063747 41063783 trf 2 18.0 2 88 0 54 0 0 44 55 0.99 GT chr1 41065862 41065924 trf 12 4.5 15 76 19 57 32 4 14 48 1.65 TTTATTTAAAGGCAT chr1 41069721 41069812 trf 4 23.5 4 88 6 143 25 25 0 49 1.51 ATCT chr1 41070295 41070331 trf 12 3.0 12 91 0 63 0 0 19 80 0.71 GTTTTTTTGTTT chr1 41070295 41070331 trf 4 9.0 4 87 0 54 0 0 19 80 0.71 GTTT chr1 41080750 41080828 trf 2 39.0 2 86 0 111 46 47 2 3 1.34 AC chr1 41082692 41082740 trf 2 24.0 2 100 0 96 50 50 0 0 1.00 CA chr1 41082820 41082876 trf 2 28.0 2 78 7 60 44 7 1 46 1.41 AT chr1 41082952 41083008 trf 2 29.0 2 92 7 98 51 0 0 48 1.00 AT chr1 41088446 41088483 trf 8 4.6 8 93 0 65 0 37 21 40 1.54 GCTCTTGC chr1 41088517 41088552 trf 8 4.4 8 88 0 52 2 40 14 42 1.60 CTCTCTTG chr1 41091070 41091105 trf 8 4.4 8 88 0 52 2 40 14 42 1.60 CTCTCTTG chr1 41091206 41091239 trf 6 5.5 6 100 0 66 84 0 0 15 0.61 AAAAAT chr1 41094101 41094159 trf 4 14.5 4 96 0 107 48 0 25 25 1.52 ATAG chr1 41095439 41095466 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 41097151 41097222 trf 6 11.8 6 100 0 142 33 0 15 50 1.44 TATATG chr1 41098287 41098324 trf 4 9.2 4 100 0 74 75 0 0 24 0.80 AAAT chr1 41098850 41098964 trf 2 57.0 2 85 0 156 1 4 48 45 1.32 TG chr1 41099410 41099514 trf 5 20.8 5 95 0 190 0 39 0 60 0.97 TTCTC chr1 41100851 41100903 trf 2 26.0 2 76 7 52 3 1 46 48 1.31 TG chr1 41101070 41101128 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 TC chr1 41101353 41101448 trf 12 7.7 12 69 6 55 29 1 22 47 1.58 TATATGTGTGTA chr1 41109027 41109067 trf 2 20.0 2 84 0 53 52 0 47 0 1.00 GA chr1 41112914 41113084 trf 4 42.5 4 85 2 225 25 1 50 23 1.57 GGAT chr1 41114345 41114393 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 AC chr1 41118610 41118647 trf 12 3.1 12 88 0 56 0 0 13 86 0.57 TGTTTTTTTTTT chr1 41119813 41119857 trf 2 22.0 2 95 0 79 0 2 47 50 1.13 TG chr1 41129301 41129496 trf 8 22.4 10 74 24 169 0 46 0 53 1.00 TCTCTCTCTC chr1 41129305 41129479 trf 10 16.9 10 93 5 230 0 44 0 55 0.99 CTCTTCTCTT chr1 41129429 41129505 trf 10 7.6 10 93 0 89 0 52 0 47 1.00 CTCTCTCCCT chr1 41129429 41129496 trf 2 33.5 2 93 0 116 0 53 0 46 1.00 CT chr1 41133196 41133235 trf 6 6.8 6 88 5 55 0 0 17 82 0.68 TTTTTG chr1 41133368 41133438 trf 2 35.5 2 91 2 115 0 47 1 51 1.09 CT chr1 41139201 41139245 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 41141543 41141576 trf 3 10.7 3 93 6 57 63 0 36 0 0.95 AGA chr1 41141574 41141731 trf 3 53.7 3 83 5 187 39 0 60 0 0.97 AGG chr1 41146134 41146267 trf 2 67.0 2 84 4 171 47 3 49 0 1.16 GA chr1 41148276 41148326 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 AC chr1 41150581 41150639 trf 2 29.0 2 82 6 64 1 1 50 46 1.22 GT chr1 41153091 41153191 trf 2 54.0 2 78 21 112 54 2 44 0 1.11 GA chr1 41153944 41154000 trf 4 13.8 4 96 3 103 76 0 0 23 0.78 AAAT chr1 41155111 41155151 trf 4 10.0 4 100 0 80 25 0 0 75 0.81 TTTA chr1 41157414 41157536 trf 4 30.5 4 88 0 181 43 5 50 0 1.26 GGAA chr1 41166929 41166979 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 41171774 41171828 trf 4 13.8 4 96 3 101 24 25 0 50 1.50 TCTA chr1 41173600 41173657 trf 2 29.0 2 96 3 107 49 50 0 0 1.00 AC chr1 41174237 41174294 trf 2 27.0 2 79 10 51 43 45 0 10 1.38 CA chr1 41174505 41174646 trf 2 68.5 2 76 5 111 49 39 1 9 1.43 AC chr1 41179364 41179399 trf 1 35.0 1 94 0 61 97 0 2 0 0.19 A chr1 41179365 41179428 trf 7 8.9 7 87 3 63 87 11 1 0 0.62 AAAAAAC chr1 41182145 41182170 trf 12 2.1 12 100 0 50 60 16 24 0 1.36 AAGAAGCAAAGC chr1 41183950 41184002 trf 6 8.7 6 100 0 104 50 32 0 17 1.47 TCAAAC chr1 41185145 41185256 trf 3 37.3 3 98 1 215 0 33 0 66 0.92 TTC chr1 41185260 41185311 trf 3 17.0 3 91 0 75 0 60 0 39 0.97 CTC chr1 41191518 41191549 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 41193927 41193966 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 41195609 41195663 trf 4 14.0 4 78 21 62 27 1 0 70 0.98 TTTA chr1 41195611 41195668 trf 10 5.5 10 93 4 78 28 3 0 68 1.06 TATTTATTTA chr1 41198142 41198223 trf 2 40.5 2 94 0 144 46 0 53 0 1.00 GA chr1 41198865 41198897 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 41199911 41199959 trf 2 24.0 2 100 0 96 0 50 0 50 1.00 TC chr1 41200504 41200548 trf 2 22.0 2 95 0 79 50 47 0 2 1.13 AC chr1 41220715 41220904 trf 2 100.0 2 75 11 166 43 2 52 1 1.22 GA chr1 41224338 41224394 trf 1 56.0 1 85 0 67 0 0 8 91 0.43 T chr1 41229102 41229142 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 AT chr1 41229204 41229246 trf 8 5.5 8 86 11 61 33 14 0 52 1.42 CATTATTA chr1 41233137 41233174 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 41238928 41239008 trf 9 9.1 9 68 14 51 30 42 1 26 1.63 TCATCACCA chr1 41243476 41243525 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 41245893 41245948 trf 2 27.5 2 88 0 83 47 47 1 3 1.30 CA chr1 41246682 41246708 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 41248745 41248815 trf 4 18.2 4 84 8 92 25 24 1 48 1.59 TATC chr1 41248834 41248873 trf 4 9.8 4 94 0 69 25 2 23 48 1.63 TATG chr1 41248890 41248953 trf 2 31.5 2 93 0 99 46 1 3 49 1.27 TA chr1 41249877 41249946 trf 6 11.7 6 76 15 56 0 0 17 82 0.67 TTTTTG chr1 41251392 41251557 trf 4 42.2 4 73 4 95 50 21 0 27 1.48 TACA chr1 41251415 41251556 trf 10 14.3 10 71 5 54 51 20 0 27 1.47 ACACATACAT chr1 41254343 41254390 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 41254743 41254771 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 41257490 41257549 trf 8 7.4 8 96 0 100 1 10 49 38 1.47 GTGTGCGT chr1 41258377 41258621 trf 10 25.6 10 70 12 104 16 1 37 44 1.56 GTGTGTGTAT chr1 41258424 41258624 trf 8 23.5 8 71 17 127 17 0 38 44 1.52 TATGTGTG chr1 41258434 41258612 trf 6 29.3 6 70 2 86 16 0 39 43 1.48 TGTGTG chr1 41258515 41258627 trf 12 9.2 12 68 18 61 16 0 40 43 1.47 ATGTGTGTATGA chr1 41264005 41264119 trf 6 19.0 6 83 0 129 0 8 45 44 1.40 GTGTGT chr1 41264005 41264119 trf 4 28.5 4 83 0 129 0 8 45 44 1.40 GTGT chr1 41266204 41266244 trf 4 10.0 4 100 0 80 50 25 0 25 1.50 CAAT chr1 41268133 41268178 trf 3 15.0 3 100 0 90 33 0 0 66 0.92 TTA chr1 41270257 41270303 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 41271518 41271555 trf 9 4.1 9 85 0 56 24 0 72 2 0.97 GGAGGGGGA chr1 41276086 41276157 trf 1 71.0 1 85 0 97 92 0 7 0 0.37 A chr1 41276261 41276301 trf 11 3.5 11 86 10 53 0 20 0 80 0.72 TCTTTTTTTTC chr1 41278874 41278912 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 41278911 41279131 trf 12 18.3 12 78 0 197 44 44 0 10 1.42 CACACACACACA chr1 41278911 41279131 trf 8 27.5 8 78 0 197 44 44 0 10 1.42 CACACACA chr1 41279725 41279756 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 41280239 41280300 trf 2 31.0 2 90 9 99 49 1 49 0 1.10 AG chr1 41283060 41283091 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 41283148 41283190 trf 11 3.7 11 79 17 50 54 42 0 2 1.13 AAACCAAACCC chr1 41283640 41283721 trf 6 12.7 6 80 13 65 1 56 0 41 1.07 CTTCCC chr1 41283725 41283773 trf 4 12.0 4 100 0 96 0 50 0 50 1.00 CCTT chr1 41283770 41283831 trf 4 15.2 4 100 0 122 0 26 0 73 0.83 CTTT chr1 41287495 41287561 trf 5 13.4 5 90 9 109 19 1 0 78 0.82 TATTT chr1 41288281 41288312 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 41288505 41288541 trf 4 9.0 4 100 0 72 25 0 0 75 0.81 TTAT chr1 41291721 41291762 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 41296133 41296507 trf 4 92.2 4 82 8 231 1 42 0 55 1.12 CTTC chr1 41298351 41298376 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 41300708 41300733 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 41300760 41300809 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 41300808 41300836 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 41302647 41302694 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 41302693 41302725 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 TG chr1 41313418 41313569 trf 4 38.0 4 94 4 225 0 29 0 70 0.87 TTCT chr1 41314547 41314662 trf 2 58.0 2 75 5 99 4 5 44 46 1.45 TG chr1 41314661 41314711 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 41317279 41317312 trf 4 8.2 4 93 0 57 0 24 21 54 1.45 TGTC chr1 41319814 41319859 trf 8 6.1 8 80 19 62 48 13 37 0 1.42 GAGCAAGA chr1 41319821 41319866 trf 6 6.8 6 81 18 54 48 15 35 0 1.45 AGAGCA chr1 41321987 41322022 trf 1 35.0 1 100 0 70 0 0 0 100 0.00 T chr1 41328411 41328463 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 AG chr1 41334943 41335076 trf 6 21.7 6 93 4 230 0 18 0 81 0.68 TTTTTC chr1 41334943 41335062 trf 1 119.0 1 67 0 67 0 15 0 84 0.63 T chr1 41335060 41335154 trf 4 24.5 4 87 8 133 0 44 1 54 1.07 TTCC chr1 41335151 41335215 trf 4 16.0 4 96 0 119 0 26 0 73 0.84 CTTT chr1 41336462 41336521 trf 4 14.8 4 96 0 109 0 47 0 52 1.00 CTTC chr1 41336518 41336560 trf 4 11.0 4 90 10 70 0 23 0 76 0.79 CTTT chr1 41336720 41336789 trf 2 34.5 2 86 5 86 47 46 2 2 1.32 CA chr1 41339994 41340062 trf 12 6.3 11 76 18 63 0 0 17 82 0.67 TTTTTGTTTGT chr1 41340000 41340062 trf 8 7.6 8 82 10 72 0 0 17 82 0.67 TTTTTGTT chr1 41340002 41340052 trf 4 12.8 4 84 16 61 0 0 20 80 0.72 TTTG chr1 41341258 41341312 trf 12 4.5 12 88 0 81 0 61 0 38 0.96 TCCCTCCCTTCC chr1 41341272 41341311 trf 8 4.9 8 80 0 51 0 61 0 38 0.96 CCTCCCTT chr1 41344403 41344456 trf 6 8.8 6 78 0 52 22 1 26 49 1.60 TGTATA chr1 41344419 41344827 trf 4 107.2 4 65 16 73 21 0 26 50 1.54 TATG chr1 41344427 41344829 trf 10 41.5 10 68 16 154 21 0 27 50 1.54 TGTGTATGTA chr1 41344955 41344988 trf 4 8.2 4 100 0 66 75 24 0 0 0.80 AAAC chr1 41346644 41346688 trf 5 8.4 5 85 7 52 2 2 15 79 0.93 TTGTT chr1 41347238 41347286 trf 4 12.0 4 86 0 69 70 22 4 2 1.15 CAAA chr1 41355925 41355985 trf 2 30.5 2 96 3 113 50 0 50 0 1.00 AG chr1 41355982 41356068 trf 3 29.0 3 97 2 165 67 0 32 0 0.91 AGA chr1 41356063 41356150 trf 12 7.1 12 83 10 86 35 0 64 0 0.94 GAAGAGGAGGAG chr1 41356066 41356114 trf 3 16.0 3 95 0 87 35 0 64 0 0.94 GAG chr1 41356069 41356141 trf 9 8.8 8 79 14 60 36 0 63 0 0.94 GAGGAGGA chr1 41358174 41358230 trf 4 13.8 4 98 1 103 23 0 0 76 0.78 TTTA chr1 41359886 41359930 trf 4 11.0 4 100 0 88 75 0 0 25 0.81 AAAT chr1 41364006 41364058 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 TA chr1 41365087 41365645 trf 12 46.2 12 87 0 720 0 59 5 35 1.19 CTCCTCCTCCTC chr1 41365637 41365696 trf 12 4.9 12 82 0 64 0 42 0 57 0.98 TCCTCTTCTTCT chr1 41365643 41365696 trf 3 17.7 3 88 0 61 0 39 0 60 0.97 TCT chr1 41367501 41367551 trf 4 12.5 4 100 0 100 0 50 0 50 1.00 CTTC chr1 41367549 41367593 trf 2 22.0 2 95 0 79 0 52 0 47 1.00 CT chr1 41368232 41368286 trf 6 8.1 7 86 14 55 0 0 11 88 0.50 GTTTTTT chr1 41368233 41368285 trf 10 5.4 10 90 6 81 0 0 7 92 0.39 TTTTTTTGTT chr1 41368241 41368285 trf 1 44.0 1 90 0 70 0 0 4 95 0.27 T chr1 41374557 41374631 trf 2 42.0 2 71 24 60 1 0 51 47 1.09 TG chr1 41374571 41374598 trf 3 9.0 3 100 0 54 0 0 66 33 0.92 GTG chr1 41378973 41379010 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 41380996 41381033 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 41381032 41381206 trf 8 21.8 8 89 0 186 50 9 39 0 1.35 AGAGAGAG chr1 41382507 41382554 trf 4 12.5 4 78 13 55 0 2 21 76 0.89 TTTG chr1 41385989 41386033 trf 3 14.7 3 100 0 88 0 0 34 65 0.93 TGT chr1 41386726 41386778 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 GA chr1 41389371 41389438 trf 8 8.2 8 80 3 53 0 52 2 44 1.16 TCTCTCCC chr1 41389371 41389430 trf 2 31.0 2 76 10 61 0 49 3 47 1.18 TC chr1 41391553 41391591 trf 6 6.3 6 93 0 67 0 36 13 50 1.42 TCTCTG chr1 41391589 41391643 trf 4 13.5 4 92 0 90 0 70 0 29 0.88 TCCC chr1 41392589 41392674 trf 11 6.6 13 74 18 54 58 0 41 0 0.98 AGGAAGGAAGAAA chr1 41393133 41393344 trf 4 54.5 4 70 13 84 59 1 36 1 1.17 GGAA chr1 41393134 41393342 trf 12 16.9 12 69 18 99 60 1 36 1 1.17 GAAGGAAGGAAA chr1 41395086 41395147 trf 11 5.8 10 75 19 54 29 3 0 67 1.07 TTTATATTTA chr1 41398317 41398677 trf 8 43.9 8 87 6 256 28 23 0 48 1.51 TATCTATA chr1 41398367 41398677 trf 4 75.8 4 94 4 539 26 24 0 49 1.50 TATC chr1 41400346 41400372 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 CA chr1 41404174 41404237 trf 2 31.5 2 96 0 117 49 49 0 1 1.10 CA chr1 41406667 41406731 trf 4 16.2 4 83 3 85 54 0 45 0 0.99 AGGA chr1 41406851 41406894 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 41414726 41415014 trf 10 30.2 10 65 17 78 48 31 3 17 1.62 TACACATACA chr1 41414727 41415010 trf 12 23.4 12 69 9 92 48 31 3 16 1.62 ACACATACATAC chr1 41414863 41415052 trf 12 15.6 12 72 6 85 49 33 3 13 1.58 ACACACATACAC chr1 41414939 41415053 trf 2 57.0 2 74 3 68 48 37 2 11 1.53 AC chr1 41427431 41427461 trf 4 7.5 4 100 0 60 0 46 0 53 1.00 TTCC chr1 41427601 41427630 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 41429774 41429820 trf 6 8.0 6 90 9 62 2 0 17 80 0.81 TTTTTG chr1 41429775 41429818 trf 5 7.8 5 85 10 50 2 0 16 81 0.79 TTTTG chr1 41430543 41430594 trf 2 25.5 2 100 0 102 50 49 0 0 1.00 AC chr1 41430587 41430687 trf 12 8.0 12 77 8 83 51 16 33 0 1.45 ACACAGAGAGAG chr1 41430595 41430684 trf 6 13.8 6 73 13 70 51 14 33 0 1.43 AGAGAC chr1 41430605 41430672 trf 8 8.6 8 77 6 75 52 13 34 0 1.41 AGAGAGAC chr1 41430887 41430916 trf 4 7.2 4 100 0 58 51 24 24 0 1.48 AGAC chr1 41430913 41430954 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 41430953 41430984 trf 2 15.5 2 100 0 62 51 0 48 0 1.00 AG chr1 41432000 41432042 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 41432041 41432084 trf 2 21.5 2 95 0 77 48 48 0 2 1.14 CA chr1 41432149 41432204 trf 2 27.5 2 81 0 56 41 0 9 49 1.34 TA chr1 41432151 41432200 trf 10 4.9 10 79 0 62 40 0 10 48 1.37 TATATATATG chr1 41435184 41435225 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 41436041 41436079 trf 2 19.0 2 94 0 67 47 50 2 0 1.15 CA chr1 41436205 41436248 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 41436992 41437017 trf 2 12.5 2 100 0 50 0 0 52 48 1.00 GT chr1 41438485 41438511 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 TG chr1 41443989 41444049 trf 2 30.0 2 96 0 111 0 51 0 48 1.00 CT chr1 41444049 41444091 trf 8 5.2 8 91 0 66 2 35 0 61 1.09 TTCCTTTC chr1 41448603 41448668 trf 2 32.5 2 96 0 121 0 0 47 52 1.00 TG chr1 41451855 41452048 trf 7 26.3 7 81 16 223 0 69 0 30 0.93 CCCTCTC chr1 41452831 41453030 trf 6 33.3 6 90 5 206 49 4 12 33 1.59 TATAGA chr1 41453023 41453060 trf 4 9.2 4 93 0 65 48 0 27 24 1.51 ATAG chr1 41453062 41453102 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 41453952 41454013 trf 2 32.5 2 84 12 85 49 0 1 49 1.10 TA chr1 41455042 41455077 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 41457047 41457072 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 41457220 41457259 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 41457256 41457395 trf 4 35.0 4 92 4 174 67 0 32 0 0.91 AGAA chr1 41457998 41458037 trf 4 10.0 4 88 5 62 0 0 23 76 0.78 GTTT chr1 41476154 41476197 trf 4 10.8 4 89 0 68 30 0 20 48 1.50 ATGT chr1 41477840 41477896 trf 2 27.0 2 89 7 76 48 44 5 1 1.36 AC chr1 41485796 41485827 trf 4 7.8 4 100 0 62 25 0 22 51 1.48 ATTG chr1 41488691 41488764 trf 4 18.2 4 85 5 103 71 1 27 0 0.95 AAAG chr1 41488795 41488875 trf 12 6.3 12 72 16 72 46 1 50 2 1.23 AAGAGGAGGAGG chr1 41488844 41488943 trf 3 33.0 3 78 8 85 57 0 41 1 1.05 GAA chr1 41488892 41488952 trf 12 4.8 12 85 6 66 65 0 35 0 0.93 AAGAAGAAGAAA chr1 41488934 41488993 trf 4 14.8 4 89 0 91 69 0 30 0 0.89 AAGA chr1 41493019 41493075 trf 8 7.5 8 81 18 52 64 10 25 0 1.26 AAGAAAGC chr1 41498155 41498227 trf 3 24.0 3 94 0 126 63 0 36 0 0.94 GAA chr1 41501128 41501158 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 41503619 41503658 trf 2 19.5 2 94 0 69 0 2 51 46 1.14 GT chr1 41505687 41505721 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 41506403 41506436 trf 10 3.3 10 95 0 57 87 0 12 0 0.53 AAAAAAAAAG chr1 41507005 41507085 trf 5 16.0 5 97 0 151 0 40 1 58 1.06 TTCTC chr1 41507091 41507279 trf 6 31.5 6 94 4 328 0 48 0 51 1.00 TTCCCT chr1 41508719 41508838 trf 8 14.9 8 68 22 54 2 29 14 53 1.54 TGTCTCTC chr1 41510082 41510132 trf 5 10.0 5 100 0 100 20 0 0 80 0.72 ATTTT chr1 41512130 41512164 trf 1 34.0 1 100 0 68 100 0 0 0 0.00 A chr1 41526466 41526501 trf 4 8.8 4 100 0 70 0 25 22 51 1.48 TCTG chr1 41526894 41526933 trf 10 3.8 10 82 3 51 2 0 15 82 0.79 TTTTTGTTTT chr1 41534164 41534223 trf 8 7.5 8 77 9 50 59 0 40 0 0.97 GAAAGGAA chr1 41534367 41534409 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 41535309 41535448 trf 2 69.5 2 81 0 107 38 2 10 47 1.53 TA chr1 41536575 41536611 trf 4 9.8 4 82 17 51 77 22 0 0 0.76 CAAA chr1 41540251 41540287 trf 2 18.0 2 94 0 63 2 0 47 50 1.15 GT chr1 41542301 41542335 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 41544491 41544544 trf 4 13.5 4 96 4 99 75 0 0 24 0.80 AATA chr1 41546127 41546250 trf 6 20.5 6 100 0 246 34 0 65 0 0.93 AGAGGG chr1 41547215 41547242 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 41547248 41547275 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 41556708 41556755 trf 2 24.5 2 91 8 80 51 48 0 0 1.00 AC chr1 41561699 41561757 trf 2 29.0 2 100 0 116 0 0 50 50 1.00 TG chr1 41562564 41562624 trf 2 30.5 2 93 3 104 51 0 48 0 1.00 GA chr1 41563839 41563914 trf 3 25.7 3 74 5 55 38 0 60 1 1.06 AGG chr1 41563842 41563929 trf 9 9.2 9 77 8 66 42 0 56 1 1.07 AGGAGGAGA chr1 41564359 41564463 trf 9 11.9 9 79 6 88 39 4 55 0 1.21 GAGAAGGAG chr1 41564363 41564463 trf 6 16.7 6 92 0 110 39 5 56 0 1.21 AGGAGG chr1 41567121 41567166 trf 8 5.4 9 75 20 53 17 71 0 11 1.14 CTCCACCCA chr1 41567356 41567522 trf 10 16.2 10 89 5 233 0 38 10 51 1.36 TCTCTGTCTC chr1 41573343 41573385 trf 2 21.0 2 95 0 75 50 47 0 2 1.14 CA chr1 41574503 41574544 trf 4 10.2 4 94 0 73 0 21 26 51 1.48 TGTC chr1 41574541 41574574 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 41575593 41575683 trf 6 15.0 6 100 0 180 50 16 0 33 1.46 ATACAT chr1 41576610 41576960 trf 3 112.0 3 82 6 187 46 0 52 0 1.07 GAG chr1 41576782 41577078 trf 9 31.9 9 83 5 261 55 0 43 0 1.04 GAAGAAGAA chr1 41576958 41577078 trf 3 40.0 3 98 0 231 65 0 34 0 0.93 AGA chr1 41577370 41577566 trf 3 61.0 3 77 10 158 34 36 25 3 1.73 CAG chr1 41577822 41577900 trf 10 6.6 12 83 14 76 0 2 11 85 0.68 TTTTTTTGTTTG chr1 41577844 41577900 trf 1 56.0 1 81 0 67 0 0 8 91 0.43 T chr1 41583381 41583408 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 41584704 41584743 trf 4 10.0 4 94 5 71 76 23 0 0 0.78 AAAC chr1 41587532 41587568 trf 2 18.0 2 100 0 72 50 0 0 50 1.00 AT chr1 41593124 41593166 trf 3 14.0 3 100 0 84 0 66 0 33 0.92 CTC chr1 41593164 41593267 trf 3 34.0 3 96 1 188 0 34 0 65 0.93 TCT chr1 41594081 41594141 trf 10 5.8 10 78 7 57 38 11 6 43 1.68 ATATATATGC chr1 41600071 41600147 trf 8 9.0 8 75 16 64 78 21 0 0 0.74 CAAAAAAA chr1 41600071 41600123 trf 4 12.2 4 87 4 59 78 21 0 0 0.74 CAAA chr1 41600073 41600146 trf 12 6.5 12 73 20 61 79 20 0 0 0.73 AAAAAACAAAAC chr1 41600075 41600144 trf 5 14.8 5 88 8 78 78 21 0 0 0.76 AAAAC chr1 41608855 41608905 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 TG chr1 41609380 41609431 trf 2 25.0 2 88 4 75 3 1 47 47 1.32 TG chr1 41613995 41614069 trf 4 18.5 4 85 0 76 50 6 40 2 1.43 AGAG chr1 41613995 41614069 trf 6 12.3 6 77 0 76 50 6 40 2 1.43 AGAGAG chr1 41614066 41614125 trf 4 14.8 4 96 0 109 27 0 72 0 0.84 GAGG chr1 41617916 41617967 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 41626643 41626725 trf 6 14.0 6 88 5 60 50 41 0 8 1.33 TACACA chr1 41626673 41626729 trf 2 28.0 2 100 0 112 50 50 0 0 1.00 CA chr1 41628958 41629031 trf 2 36.0 2 88 2 110 47 46 2 2 1.31 CA chr1 41631302 41631381 trf 2 39.5 2 97 0 149 0 0 48 51 1.00 TG chr1 41643089 41643132 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 41643131 41643251 trf 2 60.5 2 85 1 152 52 5 41 0 1.25 AG chr1 41646542 41646872 trf 4 83.0 4 88 7 413 44 2 27 25 1.68 TAGA chr1 41649812 41649977 trf 4 42.0 4 74 6 77 13 0 36 49 1.48 TGTG chr1 41655949 41655984 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 41655983 41656028 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 41656882 41656997 trf 10 11.1 10 76 14 74 53 7 38 0 1.30 AGAAAGAGAG chr1 41656882 41656997 trf 8 13.4 8 82 7 68 53 7 38 0 1.30 AGAAAGAG chr1 41656894 41656998 trf 8 12.0 8 87 8 91 50 9 39 0 1.35 AGAGAGAC chr1 41661726 41661759 trf 3 11.3 3 87 6 50 3 0 30 66 1.06 TGT chr1 41662528 41662575 trf 4 11.8 4 80 17 53 0 0 19 80 0.70 TTTG chr1 41662981 41663028 trf 4 11.8 4 100 0 94 25 23 0 51 1.49 TATC chr1 41664175 41664231 trf 3 19.0 3 96 3 105 33 0 0 66 0.92 TAT chr1 41667541 41667646 trf 2 52.5 2 85 0 138 49 0 46 2 1.23 AG chr1 41667675 41667721 trf 10 4.5 10 86 2 65 54 34 8 2 1.43 ACAGACACAC chr1 41667820 41667851 trf 4 7.8 4 100 0 62 51 25 22 0 1.48 ACAG chr1 41667848 41667875 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 41671171 41671292 trf 3 40.3 3 88 0 161 38 0 61 0 0.96 AGG chr1 41673571 41673634 trf 2 32.0 2 83 3 83 47 4 1 46 1.33 TA chr1 41683934 41683989 trf 2 27.5 2 96 0 101 1 0 50 47 1.11 GT chr1 41687418 41687478 trf 2 30.0 2 100 0 120 50 50 0 0 1.00 AC chr1 41689494 41689589 trf 5 19.0 5 97 0 181 1 0 20 78 0.80 GTTTT chr1 41694895 41694962 trf 10 6.9 10 77 6 66 47 19 2 29 1.64 ATATACATAC chr1 41695202 41695230 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 AT chr1 41695229 41695254 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 41695253 41695298 trf 2 22.5 2 100 0 90 48 0 0 51 1.00 TA chr1 41695354 41695388 trf 6 5.7 6 85 0 50 2 2 14 79 0.97 TTTTTG chr1 41695356 41695398 trf 11 3.7 12 82 17 54 4 2 16 76 1.07 TTTGTTTTTGTA chr1 41696696 41696755 trf 2 29.5 2 96 0 109 0 49 0 50 1.00 CT chr1 41696754 41696808 trf 2 27.0 2 96 0 99 48 50 0 1 1.11 CA chr1 41697766 41697825 trf 2 29.5 2 92 0 100 0 45 3 50 1.18 TC chr1 41697824 41697863 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 41700002 41700041 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 41701376 41701427 trf 2 25.5 2 100 0 102 0 49 0 50 1.00 TC chr1 41701638 41701675 trf 2 18.5 2 94 0 65 2 0 48 48 1.15 GT chr1 41708877 41708934 trf 9 6.8 9 74 9 50 8 0 43 47 1.34 TGGTGTGTA chr1 41708879 41708981 trf 2 54.0 2 69 11 72 6 0 44 48 1.36 GT chr1 41710902 41710941 trf 4 9.8 4 94 0 69 48 23 2 25 1.63 ATAC chr1 41711197 41711263 trf 4 17.0 4 93 6 118 50 0 24 25 1.50 GATA chr1 41711269 41711318 trf 2 25.0 2 95 4 91 0 0 51 48 1.00 TG chr1 41715879 41715921 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 AC chr1 41716711 41716757 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 41729472 41729526 trf 6 7.9 7 90 10 69 88 11 0 0 0.50 ACAAAAA chr1 41729474 41729527 trf 8 6.9 8 87 12 76 88 11 0 0 0.51 AAAAAACA chr1 41729474 41729526 trf 1 52.0 1 80 0 59 90 9 0 0 0.46 A chr1 41734375 41734422 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 41734421 41734473 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 AG chr1 41739617 41739697 trf 2 41.0 2 87 9 121 50 0 48 1 1.08 GA chr1 41743898 41743952 trf 5 10.8 5 86 13 60 0 0 22 77 0.76 TTTTG chr1 41743900 41743946 trf 5 8.3 6 95 4 64 0 0 26 73 0.83 TTGTTG chr1 41743900 41743946 trf 3 16.7 3 82 17 64 0 0 26 73 0.83 TTG chr1 41746638 41746678 trf 12 3.3 12 92 0 62 0 42 7 50 1.30 TCTCTCTCTGTC chr1 41746638 41746678 trf 2 20.0 2 84 0 53 0 42 7 50 1.30 TC chr1 41746679 41746719 trf 2 20.5 2 92 5 64 52 2 0 45 1.14 AT chr1 41752852 41752884 trf 2 16.0 2 93 0 55 0 3 50 46 1.17 TG chr1 41753448 41753476 trf 4 7.0 4 100 0 56 25 25 0 50 1.50 TTCA chr1 41754740 41754795 trf 4 13.8 4 100 0 110 25 23 0 50 1.49 TATC chr1 41756066 41756190 trf 6 20.5 6 98 1 239 0 66 0 33 0.92 CTCTCC chr1 41756708 41757023 trf 4 83.2 4 77 14 303 27 24 0 46 1.59 TATC chr1 41756709 41757023 trf 11 28.7 11 78 13 239 27 24 0 46 1.59 ATCTATCTATC chr1 41757171 41757311 trf 6 23.3 6 78 11 144 2 32 12 52 1.52 TGTCTC chr1 41758378 41758423 trf 2 22.5 2 95 0 81 2 0 48 48 1.13 GT chr1 41759773 41759826 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 41764753 41764804 trf 2 25.5 2 100 0 102 0 50 0 49 1.00 CT chr1 41765490 41765589 trf 2 49.5 2 72 11 51 47 9 3 40 1.51 AT chr1 41765588 41765625 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 41765624 41765664 trf 2 20.0 2 100 0 80 50 0 0 50 1.00 AT chr1 41767298 41767369 trf 4 17.8 4 100 0 142 0 50 0 49 1.00 CCTT chr1 41767388 41767446 trf 2 29.0 2 100 0 116 0 50 0 50 1.00 CT chr1 41767909 41767947 trf 12 3.2 12 92 0 58 21 5 34 39 1.76 TGCATGTGTGTA chr1 41767925 41767968 trf 10 4.1 10 81 6 50 16 2 34 46 1.60 TGTGTGTATG chr1 41768325 41768374 trf 2 24.5 2 91 0 80 48 46 0 4 1.20 AC chr1 41768749 41768802 trf 2 26.5 2 94 0 88 1 0 45 52 1.11 TG chr1 41768811 41768867 trf 4 13.2 4 80 10 58 3 25 21 50 1.65 TCTG chr1 41768972 41769029 trf 12 5.1 12 73 16 50 0 12 31 56 1.36 TCTGTGTGTTTG chr1 41768972 41769009 trf 4 9.2 4 90 0 56 0 18 27 54 1.44 TCTG chr1 41768986 41769055 trf 4 17.2 4 80 0 57 1 4 40 53 1.30 TGTG chr1 41769006 41769055 trf 12 4.2 12 82 10 66 2 0 44 53 1.12 TGTGTGTTTGTG chr1 41769734 41769844 trf 12 9.2 12 83 0 85 52 7 38 1 1.40 GAGAGAGAGACA chr1 41769734 41769790 trf 2 28.0 2 100 0 112 50 0 50 0 1.00 GA chr1 41771394 41771511 trf 4 29.2 4 83 6 130 44 0 31 23 1.59 ATAG chr1 41771508 41771559 trf 4 12.8 4 100 0 102 50 23 25 0 1.49 AGAC chr1 41776715 41776782 trf 2 33.5 2 93 0 116 0 47 2 49 1.16 CT chr1 41777313 41777355 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 41777354 41777403 trf 2 24.5 2 95 0 89 51 2 0 46 1.12 AT chr1 41777611 41777661 trf 2 25.0 2 91 0 82 52 46 2 0 1.12 AC chr1 41779709 41779756 trf 2 24.0 2 91 4 78 0 0 48 51 1.00 TG chr1 41780891 41781082 trf 6 31.8 6 98 0 202 47 0 52 0 1.00 AGAAGG chr1 41780891 41780938 trf 3 15.7 3 100 0 94 65 0 34 0 0.93 AGA chr1 41781535 41781566 trf 12 2.7 11 90 9 53 0 9 0 90 0.46 TTTTTTTTTTC chr1 41782329 41782361 trf 12 2.7 12 90 0 55 50 15 0 34 1.45 ATATATATACAC chr1 41782335 41782411 trf 12 6.3 12 82 0 80 48 26 1 23 1.59 ATACACATACAC chr1 41782426 41782485 trf 2 29.5 2 100 0 118 49 0 0 50 1.00 TA chr1 41786027 41786075 trf 2 24.0 2 95 0 87 0 0 47 52 1.00 TG chr1 41788406 41788436 trf 5 6.0 5 100 0 60 0 0 20 80 0.72 GTTTT chr1 41792626 41792753 trf 4 31.5 4 87 4 157 48 0 50 0 1.06 GGAA chr1 41792722 41792901 trf 4 43.2 4 84 5 214 29 1 67 1 1.10 GGAG chr1 41796290 41796324 trf 2 17.0 2 87 0 50 50 44 5 0 1.26 CA chr1 41796323 41796481 trf 6 26.3 6 98 0 199 25 16 8 50 1.73 ATATCT chr1 41797151 41797179 trf 12 2.3 12 100 0 56 67 7 0 25 1.15 AATAAATCAATA chr1 41798723 41798779 trf 4 14.2 4 96 3 105 25 25 0 50 1.50 TCTA chr1 41798986 41799046 trf 10 5.8 10 73 7 57 48 15 3 33 1.61 ATATATATAC chr1 41799182 41799214 trf 4 8.2 4 93 6 57 25 25 0 50 1.50 TATC chr1 41806551 41806623 trf 6 11.8 6 72 16 51 0 0 20 79 0.74 TTTTTG chr1 41806557 41806622 trf 5 13.4 5 74 9 55 0 0 21 78 0.75 TTGTT chr1 41810397 41810432 trf 1 35.0 1 100 0 70 100 0 0 0 0.00 A chr1 41811772 41811811 trf 1 39.0 1 89 0 51 0 0 7 92 0.39 T chr1 41812799 41812960 trf 2 80.5 2 86 0 196 6 0 50 42 1.29 TG chr1 41813159 41813219 trf 4 15.0 4 100 0 120 0 50 0 50 1.00 TCCT chr1 41815464 41815524 trf 2 30.0 2 93 0 102 0 1 48 50 1.11 GT chr1 41821576 41821643 trf 12 5.4 12 77 7 53 5 4 35 53 1.46 GTGTGTATTTGT chr1 41821585 41821660 trf 2 37.5 2 73 0 51 4 6 36 53 1.46 TG chr1 41826803 41826880 trf 2 38.5 2 89 0 118 3 0 48 48 1.20 TG chr1 41827220 41827265 trf 4 11.2 4 100 0 90 51 0 24 24 1.49 ATAG chr1 41830143 41830181 trf 2 19.5 2 91 5 60 44 0 55 0 0.99 GA chr1 41831064 41831104 trf 4 9.5 4 89 5 53 0 20 2 77 0.88 TTCT chr1 41832183 41832233 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 41835067 41835292 trf 5 44.8 5 96 2 400 40 0 59 0 0.98 GGAGA chr1 41835072 41835289 trf 8 25.5 10 69 30 168 41 0 58 0 0.98 GAGAGAGAGA chr1 41836510 41836547 trf 4 9.0 4 94 5 65 72 24 0 2 0.97 ACAA chr1 41838406 41838447 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 41838587 41838700 trf 10 10.7 11 83 11 98 0 67 0 30 1.03 TCTCCTCCTCC chr1 41838601 41838702 trf 5 19.8 5 85 3 60 0 69 0 28 1.02 CCCCT chr1 41838628 41838699 trf 10 7.1 10 91 3 99 0 64 0 35 0.94 CTCCTCTCCT chr1 41839385 41839428 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 41847257 41847311 trf 4 13.5 4 100 0 108 0 24 0 75 0.80 TTTC chr1 41847308 41847349 trf 4 10.2 4 100 0 82 0 51 0 48 1.00 CTTC chr1 41847346 41847399 trf 4 13.2 4 100 0 106 0 73 0 26 0.83 TCCC chr1 41847398 41847458 trf 4 15.0 4 96 0 111 0 26 0 73 0.84 TTCT chr1 41853773 41853864 trf 4 22.2 4 93 4 146 0 28 0 71 0.86 TCTT chr1 41854509 41854687 trf 6 30.7 6 92 6 296 17 15 17 49 1.80 TATGTC chr1 41854678 41854738 trf 9 6.7 9 100 0 120 33 0 21 45 1.52 ATGTATATG chr1 41854879 41854915 trf 2 17.5 2 88 5 54 50 44 2 2 1.31 AC chr1 41855350 41855393 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 41856054 41856188 trf 2 67.0 2 84 0 178 44 2 5 47 1.37 AT chr1 41856975 41857016 trf 4 10.2 4 100 0 82 0 24 24 51 1.49 TCTG chr1 41857049 41857090 trf 2 20.5 2 100 0 82 51 48 0 0 1.00 AC chr1 41858311 41858364 trf 2 27.5 2 81 7 65 52 0 47 0 1.00 AG chr1 41859001 41859035 trf 2 17.0 2 100 0 68 50 0 0 50 1.00 AT chr1 41862144 41862171 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 41863556 41863584 trf 2 14.0 2 100 0 56 50 0 50 0 1.00 AG chr1 41863582 41863628 trf 4 11.5 4 95 0 83 52 0 47 0 1.00 AGGA chr1 41863625 41863691 trf 4 16.5 4 100 0 132 75 0 24 0 0.80 AAGA chr1 41867669 41867762 trf 4 23.2 4 100 0 186 74 0 25 0 0.82 GAAA chr1 41877330 41877380 trf 2 25.0 2 91 0 73 6 0 44 50 1.26 TG chr1 41880749 41880874 trf 4 31.2 4 96 0 178 0 31 0 68 0.90 TCTT chr1 41883253 41883322 trf 2 34.5 2 76 0 57 49 39 5 5 1.51 AC chr1 41884822 41884884 trf 2 31.5 2 93 3 99 50 46 0 3 1.17 AC chr1 41886620 41886707 trf 4 21.5 4 95 2 156 73 0 26 0 0.83 AAAG chr1 41899789 41899823 trf 2 17.0 2 93 0 59 2 0 47 50 1.16 TG chr1 41899789 41899832 trf 12 3.6 12 90 0 68 4 2 44 48 1.36 TGTGTGTGTGTA chr1 41903487 41903600 trf 7 15.9 7 72 7 75 38 15 5 40 1.71 ATACTAT chr1 41903996 41904055 trf 2 30.0 2 90 10 95 49 49 1 0 1.11 AC chr1 41911040 41911636 trf 4 152.2 4 82 9 379 53 1 26 18 1.52 GATA chr1 41913057 41913112 trf 2 27.5 2 88 0 83 47 47 1 3 1.30 AC chr1 41917161 41917220 trf 7 8.4 7 98 0 100 28 52 15 3 1.58 GCACCCA chr1 41917980 41918017 trf 12 3.2 12 77 14 51 13 78 0 8 0.96 CCCCCCTACCCA chr1 41919699 41919752 trf 2 26.5 2 92 0 88 49 47 1 1 1.23 AC chr1 41919751 41919790 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 41922972 41923013 trf 2 20.5 2 89 0 64 2 0 43 53 1.13 TG chr1 41927049 41927083 trf 5 6.8 5 100 0 68 0 0 17 82 0.67 TTTTG chr1 41927113 41927170 trf 4 14.2 4 92 0 78 26 7 0 66 1.17 ATTT chr1 41928008 41928047 trf 4 9.8 4 100 0 78 48 0 25 25 1.51 TAGA chr1 41928201 41928238 trf 5 7.6 5 93 6 67 81 0 0 18 0.70 AAAAT chr1 41933319 41933423 trf 6 19.0 6 74 17 50 42 0 55 1 1.10 AGAGAG chr1 41933325 41933423 trf 12 8.8 12 72 17 63 40 0 57 2 1.10 AGAGGAGAGAGG chr1 41933818 41933853 trf 2 17.5 2 93 0 61 2 48 0 48 1.16 TC chr1 41933852 41933877 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 41935592 41935637 trf 2 22.5 2 90 0 72 4 0 48 46 1.22 TG chr1 41939393 41939491 trf 5 19.8 5 96 2 117 31 8 20 39 1.82 TATGA chr1 41945367 41945397 trf 4 7.8 4 92 7 53 26 50 23 0 1.50 CACG chr1 41946034 41946080 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 41946121 41946157 trf 6 6.0 6 93 0 63 50 2 16 30 1.60 AGATAT chr1 41946166 41946255 trf 9 9.9 9 96 0 124 31 22 12 33 1.91 TCATATACG chr1 41949325 41949408 trf 2 41.5 2 82 0 103 44 3 4 46 1.42 TA chr1 41950354 41950397 trf 2 21.5 2 90 0 68 51 0 48 0 1.00 AG chr1 41953128 41953161 trf 5 6.8 5 96 3 59 0 0 15 84 0.61 TTTTG chr1 41955036 41955083 trf 12 3.9 12 88 0 67 12 0 36 51 1.40 TGTGTATGTGTG chr1 41958359 41958418 trf 4 14.8 4 100 0 118 0 25 0 74 0.82 TTCT chr1 41958415 41958590 trf 4 43.0 4 87 5 219 0 50 1 47 1.15 TTCC chr1 41959579 41959614 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 41959649 41959828 trf 12 15.3 12 65 16 63 46 35 1 16 1.58 ACACACACATAT chr1 41959673 41959857 trf 8 22.9 8 65 19 71 46 35 1 16 1.57 ACATACAC chr1 41959708 41959828 trf 12 9.8 12 74 13 75 49 33 1 15 1.55 ACATACACACAA chr1 41965488 41965521 trf 4 8.8 4 87 12 52 0 0 21 78 0.75 TTTG chr1 41969752 41969803 trf 2 25.5 2 91 0 84 0 45 3 50 1.20 TC chr1 41969802 41969827 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 41971199 41971306 trf 11 10.0 11 73 14 55 74 24 0 0 0.87 AAAACAAAAAC chr1 41971199 41971306 trf 5 21.0 5 79 12 60 74 24 0 0 0.87 AAAAC chr1 41971911 41971992 trf 3 27.0 3 97 0 153 0 65 0 34 0.93 CTC chr1 41971990 41972042 trf 3 17.0 3 96 4 95 0 34 0 65 0.93 TCT chr1 41973489 41973601 trf 5 22.0 5 87 3 161 37 0 3 58 1.15 TATAT chr1 41974028 41974063 trf 3 11.7 3 100 0 70 31 0 0 68 0.90 TTA chr1 41975967 41976050 trf 4 21.8 4 80 9 102 49 1 24 25 1.58 GATA chr1 41978239 41978322 trf 2 42.0 2 93 2 141 0 50 0 49 1.00 TC chr1 41983405 41983465 trf 3 19.7 3 81 10 68 1 5 26 66 1.21 TTG chr1 41983878 41983908 trf 4 7.5 4 92 0 51 0 3 23 73 0.98 TTGT chr1 41986006 41986036 trf 7 4.4 7 91 8 53 90 0 10 0 0.47 AAAAAGA chr1 41986303 41986368 trf 2 32.5 2 93 0 112 50 3 0 46 1.17 AT chr1 41990210 41990260 trf 2 25.0 2 100 0 100 50 50 0 0 1.00 CA chr1 41990287 41990371 trf 2 41.0 2 73 4 69 3 40 8 47 1.51 CT chr1 41993586 41993665 trf 12 6.4 12 75 5 68 5 1 36 56 1.29 TGTGTGTGTGTT chr1 41993586 41993665 trf 2 39.5 2 75 5 61 5 1 36 56 1.29 TG chr1 41995582 41995651 trf 4 17.2 4 93 0 93 50 7 0 42 1.30 ATAT chr1 41995582 41995651 trf 10 6.9 10 91 0 93 50 7 0 42 1.30 ATATATATAT chr1 41998810 41998859 trf 2 26.5 2 80 15 61 51 0 0 48 1.00 TA chr1 41998811 41998859 trf 12 3.8 12 91 5 69 52 0 0 47 1.00 ATATATATATTA chr1 41998858 41998917 trf 2 29.5 2 89 0 91 3 0 44 52 1.17 TG chr1 41999540 41999586 trf 3 15.3 3 100 0 92 67 32 0 0 0.91 AAC chr1 42001534 42001574 trf 4 10.0 4 89 10 64 0 0 22 77 0.77 TTGT chr1 42002460 42002521 trf 2 30.5 2 100 0 122 50 49 0 0 1.00 AC chr1 42004735 42004767 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 42007344 42007386 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 42007456 42007496 trf 5 8.6 5 84 15 59 80 20 0 0 0.72 AAACA chr1 42013843 42014017 trf 4 44.2 4 80 10 180 48 1 24 25 1.60 TAGA chr1 42013933 42013997 trf 7 9.0 7 76 21 62 48 0 25 26 1.51 GATAGAT chr1 42018465 42018649 trf 6 30.7 6 97 0 242 0 40 0 59 0.98 TTCTTC chr1 42018467 42018706 trf 6 38.8 6 90 5 237 0 44 0 54 1.05 CTTCTC chr1 42020714 42020759 trf 2 22.5 2 90 0 72 48 4 46 0 1.22 GA chr1 42021211 42021474 trf 2 132.0 2 93 0 456 1 0 47 49 1.17 GT chr1 42024299 42024342 trf 2 21.5 2 100 0 86 51 0 0 48 1.00 AT chr1 42028058 42028095 trf 2 18.5 2 88 0 56 54 43 0 2 1.14 AC chr1 42029040 42029081 trf 7 5.7 7 88 5 55 0 7 4 87 0.65 TTTTTTC chr1 42037054 42037115 trf 2 30.5 2 100 0 122 49 0 50 0 1.00 GA chr1 42038533 42038721 trf 6 32.5 6 93 4 196 0 5 30 63 1.16 TTTGGT chr1 42038667 42038721 trf 5 11.0 5 88 4 83 0 0 22 77 0.76 GTTTT chr1 42041809 42041870 trf 2 30.5 2 100 0 122 0 50 0 49 1.00 CT chr1 42041869 42041906 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 42043470 42043560 trf 2 45.5 2 82 2 92 46 43 3 6 1.46 AC chr1 42047162 42047192 trf 2 15.5 2 93 6 53 50 50 0 0 1.00 AC chr1 42068491 42068591 trf 6 16.7 6 97 0 128 42 0 25 33 1.55 ATAGAT chr1 42072754 42072805 trf 2 25.5 2 91 0 84 50 45 0 3 1.20 AC chr1 42075109 42075241 trf 6 22.0 6 70 14 76 46 18 2 33 1.61 CATATA chr1 42079869 42079894 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 42081932 42081968 trf 4 9.0 4 100 0 72 25 0 75 0 0.81 GAGG chr1 42081965 42082027 trf 4 15.5 4 100 0 124 50 0 50 0 1.00 AGGA chr1 42095279 42095326 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 42095815 42095883 trf 3 23.7 3 88 5 88 0 0 25 75 0.81 TTG chr1 42097920 42097955 trf 2 18.0 2 94 5 63 48 51 0 0 1.00 CA chr1 42103111 42103150 trf 11 3.5 11 85 0 51 30 15 2 51 1.57 ATTTTTCACAA chr1 42107232 42107274 trf 6 6.8 6 86 5 57 0 0 19 80 0.70 TTTTGT chr1 42110135 42110271 trf 8 16.5 8 69 11 60 50 33 1 13 1.51 ACACATAC chr1 42110135 42110270 trf 6 23.8 6 75 11 79 51 33 1 14 1.51 ACACAT chr1 42110160 42110270 trf 10 10.4 11 73 19 51 49 33 1 15 1.55 CACATACACAT chr1 42110241 42110275 trf 2 17.5 2 93 6 61 50 50 0 0 1.00 AC chr1 42111825 42111903 trf 2 39.0 2 81 0 93 50 6 43 0 1.28 GA chr1 42114116 42114275 trf 2 80.5 2 74 7 101 52 38 2 5 1.38 AC chr1 42114575 42114642 trf 3 22.3 3 100 0 134 0 0 67 32 0.91 GGT chr1 42114643 42114684 trf 3 13.7 3 94 0 64 0 26 39 34 1.57 TGC chr1 42115928 42116041 trf 8 14.0 8 90 0 91 0 63 0 36 0.95 CCTTCCTC chr1 42115934 42116041 trf 12 8.9 12 87 0 106 0 64 0 35 0.94 CTCCCTTCCTCC chr1 42115965 42116041 trf 4 19.0 4 97 0 125 0 71 0 28 0.87 CCTC chr1 42118976 42119021 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 42119970 42120031 trf 2 30.5 2 93 6 106 1 0 49 49 1.10 TG chr1 42122946 42122987 trf 7 5.9 7 88 8 57 82 14 2 0 0.76 AAAAACA chr1 42130005 42130072 trf 6 10.8 6 71 6 53 2 31 14 50 1.58 TCTCTG chr1 42130023 42130066 trf 10 4.1 10 77 11 50 0 32 13 53 1.41 TCTCTGTCTC chr1 42131096 42131122 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 42131351 42131405 trf 5 10.8 5 88 11 76 0 1 16 81 0.78 TTTTG chr1 42151716 42151756 trf 10 4.0 10 96 0 71 50 42 0 7 1.30 TACACACACA chr1 42151717 42151756 trf 2 19.5 2 89 0 60 51 43 0 5 1.24 AC chr1 42152927 42153072 trf 2 74.0 2 87 4 161 40 0 59 0 0.97 GA chr1 42156083 42156142 trf 2 29.5 2 89 0 91 1 3 44 50 1.28 TG chr1 42157850 42157915 trf 2 32.5 2 100 0 130 0 50 0 49 1.00 CT chr1 42157912 42157958 trf 4 11.5 4 95 0 83 0 71 0 28 0.86 CTCC chr1 42162135 42162161 trf 10 2.6 10 100 0 52 30 30 11 26 1.92 CACATGTATC chr1 42165541 42165729 trf 12 15.8 12 87 5 114 54 0 45 0 0.99 AGGAAGAAAGGA chr1 42165541 42165675 trf 4 32.2 4 82 10 135 46 0 53 0 1.00 AGGA chr1 42165541 42165729 trf 8 23.2 8 83 8 85 54 0 45 0 0.99 AGGAAGAA chr1 42165672 42165731 trf 4 14.8 4 100 0 118 74 0 25 0 0.82 GAAA chr1 42173257 42173286 trf 2 14.5 2 100 0 58 51 48 0 0 1.00 AC chr1 42173285 42173321 trf 2 18.0 2 94 0 54 50 5 0 44 1.25 AT chr1 42176859 42176893 trf 5 6.8 5 93 0 59 76 20 2 0 0.92 AAACA chr1 42177026 42177058 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 42177661 42177750 trf 2 44.5 2 95 0 160 0 52 0 47 1.00 CT chr1 42178243 42178361 trf 2 59.0 2 96 0 209 0 50 0 49 1.00 CT chr1 42178358 42178401 trf 12 3.4 12 90 6 59 0 20 30 48 1.50 TCTGTGTCCGTG chr1 42178366 42178401 trf 6 5.8 6 93 0 61 0 20 31 48 1.50 TCTGTG chr1 42179511 42179570 trf 3 19.7 3 100 0 118 0 66 0 33 0.92 CTC chr1 42183615 42183735 trf 4 30.0 4 83 6 118 0 33 0 66 0.92 TCTT chr1 42189390 42189431 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 42190080 42190180 trf 1 100.0 1 85 0 137 0 0 7 93 0.37 T chr1 42197380 42197465 trf 6 14.2 6 92 0 107 52 5 41 0 1.25 AGAGAG chr1 42198628 42198655 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 42200297 42200354 trf 10 5.5 10 81 10 62 85 12 1 0 0.66 AAAAACAAAA chr1 42200305 42200352 trf 5 9.8 5 86 13 64 85 12 2 0 0.70 AAAAC chr1 42201129 42201215 trf 5 17.2 5 100 0 172 39 0 60 0 0.97 GGAGA chr1 42202515 42202544 trf 4 7.2 4 100 0 58 24 24 0 51 1.48 TCAT chr1 42203025 42203060 trf 2 17.5 2 87 0 52 2 2 42 51 1.31 TG chr1 42205166 42205220 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 42211429 42211520 trf 12 7.8 12 85 4 78 36 0 63 0 0.94 GAAGGAAGGGAG chr1 42211431 42211522 trf 8 11.6 8 88 4 69 37 0 62 0 0.95 AGGAAGGG chr1 42211435 42211495 trf 4 15.0 4 96 0 102 28 0 71 0 0.86 AGGG chr1 42217224 42217278 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 42221989 42222065 trf 2 39.0 2 81 5 93 1 0 55 43 1.08 TG chr1 42225732 42225782 trf 3 16.7 3 100 0 100 34 0 0 66 0.92 TAT chr1 42226147 42226189 trf 10 3.9 11 79 14 52 16 2 35 45 1.61 TGTGTGTGAAT chr1 42228843 42228910 trf 2 33.5 2 87 0 89 52 41 2 2 1.32 AC chr1 42231380 42231441 trf 2 30.5 2 100 0 122 0 50 0 49 1.00 CT chr1 42239469 42239603 trf 2 67.0 2 87 0 187 50 43 0 6 1.28 CA chr1 42239612 42239650 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 42240038 42240097 trf 2 30.0 2 96 3 111 0 50 0 49 1.00 TC chr1 42240875 42240932 trf 2 31.5 2 73 19 54 49 0 50 0 1.00 GA chr1 42243242 42243287 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 42243366 42243435 trf 2 34.5 2 100 0 138 50 0 49 0 1.00 AG chr1 42243655 42243683 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 42243832 42243879 trf 2 23.5 2 95 0 85 51 48 0 0 1.00 CA chr1 42248361 42248401 trf 2 20.0 2 94 0 71 52 47 0 0 1.00 CA chr1 42248404 42248469 trf 6 10.8 6 98 0 94 50 9 40 0 1.34 AGAGAC chr1 42251086 42251184 trf 2 50.0 2 91 4 164 0 47 2 50 1.12 CT chr1 42252202 42252266 trf 2 32.0 2 81 6 76 4 3 43 48 1.39 TG chr1 42252217 42252273 trf 12 4.5 12 82 8 58 7 3 42 46 1.48 ATGTGTGTGTGC chr1 42255661 42255688 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 42255690 42255722 trf 2 16.0 2 100 0 64 50 0 50 0 1.00 AG chr1 42259016 42259045 trf 6 4.8 6 100 0 58 86 0 13 0 0.58 AAAAAG chr1 42259929 42259971 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 42262287 42262340 trf 5 9.5 6 85 10 53 0 3 9 86 0.68 TTTTTG chr1 42262300 42262336 trf 1 36.0 1 88 0 54 0 0 5 94 0.31 T chr1 42264827 42264895 trf 8 8.5 8 83 0 73 0 39 10 50 1.37 TCTCTCTC chr1 42264827 42264895 trf 6 11.3 6 87 0 73 0 39 10 50 1.37 TCTCTC chr1 42264827 42264895 trf 12 5.5 12 84 6 91 0 39 10 50 1.37 TCTCTCTCTGTC chr1 42264894 42264932 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 CA chr1 42266263 42266322 trf 4 14.0 4 86 12 59 1 0 25 72 0.93 TTTG chr1 42266774 42266800 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 42269856 42269887 trf 7 4.6 7 96 4 55 90 9 0 0 0.46 AAAAAAC chr1 42272971 42273005 trf 6 5.7 6 85 0 50 0 0 20 79 0.73 TTTTGT chr1 42275975 42276096 trf 10 12.3 10 74 3 66 27 0 23 49 1.50 TATGTATGTG chr1 42276009 42276142 trf 2 66.5 2 87 0 113 36 0 12 50 1.41 TA chr1 42276181 42276219 trf 3 12.7 3 83 10 51 34 2 63 0 1.09 GGA chr1 42276197 42276223 trf 12 2.2 12 100 0 52 34 7 57 0 1.27 GAGGAGGAGGCA chr1 42276913 42276970 trf 6 9.7 6 88 3 89 82 17 0 0 0.67 AAAAAC chr1 42279114 42279139 trf 1 25.0 1 100 0 50 100 0 0 0 0.00 A chr1 42279493 42279520 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 42280420 42280506 trf 2 42.5 2 92 2 145 48 47 1 2 1.22 CA chr1 42282042 42282073 trf 8 3.9 8 100 0 62 38 51 0 9 1.35 CACACACT chr1 42283618 42283648 trf 3 10.0 3 100 0 60 33 0 0 66 0.92 TTA chr1 42284226 42284264 trf 2 19.0 2 94 0 67 50 2 47 0 1.15 GA chr1 42286244 42286313 trf 1 69.0 1 82 0 75 1 4 4 89 0.62 T chr1 42288656 42288697 trf 3 13.7 3 89 0 64 26 0 4 68 1.10 TTA chr1 42288656 42288711 trf 6 9.2 6 93 0 56 20 0 12 67 1.23 TTATTG chr1 42288695 42288727 trf 3 10.7 3 93 0 55 0 3 31 65 1.08 TTG chr1 42289528 42289646 trf 4 29.0 4 92 2 146 0 32 0 67 0.91 CTTT chr1 42289602 42289687 trf 12 7.2 12 84 7 68 7 11 0 81 0.88 TTTCTTTATTTT chr1 42289638 42289684 trf 8 5.9 8 85 10 51 13 2 0 84 0.71 TTTTTTTA chr1 42289644 42289686 trf 11 3.9 11 82 11 52 14 0 0 85 0.59 TTATTTTTTTA chr1 42297053 42297079 trf 4 6.5 4 100 0 52 76 23 0 0 0.78 AACA chr1 42297368 42297435 trf 5 13.4 5 98 0 116 0 35 0 64 0.94 TTCCT chr1 42299082 42299171 trf 2 46.0 2 92 6 148 47 0 52 0 1.00 GA chr1 42300774 42300827 trf 2 26.5 2 96 0 97 0 49 0 50 1.00 CT chr1 42302570 42302602 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 42306754 42306853 trf 3 33.0 3 97 0 189 0 34 0 65 0.93 TTC chr1 42307159 42307205 trf 12 3.7 12 86 11 65 10 8 39 41 1.71 TGTGTGTGTGCA chr1 42307177 42307215 trf 10 3.5 11 86 13 53 7 5 44 42 1.56 TGTGTGCAGTG chr1 42307554 42307623 trf 6 11.8 6 81 6 79 0 52 0 47 1.00 TCTTCC chr1 42310942 42310982 trf 4 10.0 4 100 0 80 25 25 0 50 1.50 TTCA chr1 42314946 42314984 trf 5 7.8 5 82 5 51 81 15 0 2 0.80 AAAAC chr1 42315583 42315635 trf 4 13.0 4 95 0 95 73 1 25 0 0.94 AAAG chr1 42316905 42316936 trf 3 10.3 3 92 0 53 35 61 0 3 1.12 ACC chr1 42317428 42317461 trf 4 8.5 4 86 6 50 72 24 3 0 0.98 AAAC chr1 42317712 42317744 trf 2 16.0 2 100 0 64 50 0 0 50 1.00 TA chr1 42317743 42317794 trf 2 25.5 2 89 0 66 52 41 3 1 1.31 AC chr1 42318632 42318679 trf 8 5.9 8 82 7 60 29 0 8 61 1.25 TATATTTG chr1 42318728 42318773 trf 8 5.8 8 78 5 56 40 2 6 51 1.41 TATATATG chr1 42320419 42320471 trf 2 26.0 2 100 0 104 50 0 50 0 1.00 AG chr1 42322410 42322458 trf 2 24.0 2 95 0 87 47 50 2 0 1.12 AC chr1 42326431 42326458 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 42326531 42326565 trf 12 2.8 12 86 0 50 38 38 11 11 1.79 CACACATGCACG chr1 42345461 42345747 trf 10 28.6 10 70 1 97 46 35 1 15 1.56 CACACACACA chr1 42345461 42345747 trf 8 35.8 8 70 1 97 46 35 1 15 1.56 CACACACA chr1 42351551 42351581 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 42354986 42355021 trf 4 8.8 4 93 0 61 25 2 22 48 1.64 TATG chr1 42355018 42355062 trf 4 11.0 4 100 0 88 25 0 0 75 0.81 TATT chr1 42360620 42360919 trf 8 37.4 8 86 0 364 3 4 41 51 1.37 TGTGTGTG chr1 42361474 42361501 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 42361500 42361525 trf 2 12.5 2 100 0 50 52 0 0 48 1.00 AT chr1 42361524 42361557 trf 2 16.5 2 93 0 57 51 45 0 3 1.16 AC chr1 42363293 42363323 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 42364180 42364239 trf 4 14.8 4 100 0 118 50 0 49 0 1.00 AAGG chr1 42364663 42364701 trf 5 7.4 5 94 5 67 78 0 0 21 0.74 AAATA chr1 42365403 42365497 trf 2 47.0 2 95 0 170 0 0 47 52 1.00 TG chr1 42370188 42370277 trf 2 44.5 2 90 0 142 50 44 0 4 1.22 AC chr1 42370637 42370685 trf 2 24.0 2 95 0 87 52 47 0 0 1.00 AC chr1 42372039 42372087 trf 12 4.0 12 77 0 51 0 25 31 43 1.55 TGTTGCTGCTGC chr1 42374224 42374268 trf 4 11.8 4 81 13 58 77 20 2 0 0.88 AAAC chr1 42374383 42374415 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 42374850 42374879 trf 2 14.5 2 100 0 58 48 0 51 0 1.00 GA chr1 42377942 42377975 trf 4 8.2 4 93 0 57 0 45 27 27 1.54 GCCT chr1 42385229 42385266 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 42394190 42394217 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 42404186 42404285 trf 5 20.0 5 86 7 96 71 26 2 0 0.96 CAAAA chr1 42409187 42409225 trf 4 9.5 4 100 0 76 26 23 26 23 2.00 AGTC chr1 42410054 42410105 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 42415381 42415512 trf 12 10.8 12 84 8 97 62 0 35 0 1.06 AGGAAGAAAGGA chr1 42415399 42415468 trf 4 16.8 4 81 14 79 52 1 44 1 1.19 AAGG chr1 42415465 42415512 trf 4 11.8 4 100 0 94 74 0 25 0 0.82 AAGA chr1 42418225 42418261 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 42418260 42418307 trf 2 23.5 2 100 0 94 48 51 0 0 1.00 CA chr1 42421427 42421484 trf 1 57.0 1 78 0 60 0 10 0 89 0.49 T chr1 42422731 42422770 trf 12 3.4 11 82 10 51 79 20 0 0 0.73 AAACAAAAAAC chr1 42425569 42425635 trf 10 6.6 10 89 0 78 1 40 7 50 1.40 CTCTCTCTCT chr1 42425569 42425635 trf 6 11.0 6 83 0 78 1 40 7 50 1.40 CTCTCT chr1 42425569 42425635 trf 4 16.5 4 82 0 78 1 40 7 50 1.40 CTCT chr1 42425576 42425633 trf 10 5.7 10 91 0 87 1 40 7 50 1.40 TCTCTCTGTC chr1 42425760 42425809 trf 3 16.3 3 100 0 98 67 0 0 32 0.91 ATA chr1 42426534 42426563 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 42426662 42426698 trf 2 18.0 2 94 0 63 50 47 0 2 1.15 CA chr1 42426697 42426724 trf 2 13.5 2 100 0 54 51 0 48 0 1.00 AG chr1 42433645 42433689 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 TA chr1 42433862 42433907 trf 2 22.5 2 95 0 81 51 48 0 0 1.00 CA chr1 42434025 42434052 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 42435551 42435576 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 42437715 42437757 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 42441011 42441051 trf 2 20.0 2 94 0 71 50 2 0 47 1.14 AT chr1 42442030 42442134 trf 12 8.8 12 69 19 67 42 0 55 0 1.12 AGGGAGGAAGGA chr1 42442190 42442250 trf 2 30.0 2 93 0 102 51 46 0 1 1.10 CA chr1 42442447 42442640 trf 5 38.4 5 93 2 244 0 25 0 74 0.83 TTCTT chr1 42444998 42445025 trf 2 13.5 2 100 0 54 48 0 51 0 1.00 GA chr1 42445234 42445284 trf 2 25.0 2 87 0 73 6 0 50 44 1.26 TG chr1 42452574 42452631 trf 2 28.5 2 100 0 114 0 0 50 49 1.00 GT chr1 42456076 42456431 trf 5 64.8 5 76 15 244 36 0 62 0 0.99 GGAAG chr1 42459585 42459628 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 42460899 42460936 trf 6 5.8 6 87 12 56 83 16 0 0 0.64 AAAAAC chr1 42465112 42465156 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 42474206 42474254 trf 2 24.0 2 95 0 87 2 0 47 50 1.12 GT chr1 42476246 42476290 trf 2 22.0 2 95 0 79 2 0 47 50 1.13 TG chr1 42477367 42477401 trf 12 2.8 12 100 0 68 0 8 0 91 0.43 TTTTCTTTTTTT chr1 42478579 42478646 trf 4 16.8 4 90 0 107 49 20 29 0 1.50 AGAC chr1 42480051 42480077 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 42485168 42485208 trf 2 21.5 2 80 14 50 50 0 2 47 1.14 AT chr1 42496950 42496991 trf 2 20.5 2 94 0 73 48 48 0 2 1.14 AC chr1 42498161 42498210 trf 2 24.5 2 87 0 71 44 0 6 48 1.27 AT chr1 42500196 42500221 trf 4 6.2 4 100 0 50 0 0 28 72 0.86 GTTT chr1 42500934 42500994 trf 2 31.5 2 90 9 99 51 48 0 0 1.00 AC chr1 42501098 42501129 trf 2 15.5 2 100 0 62 51 0 0 48 1.00 AT chr1 42501616 42501654 trf 8 4.5 8 87 12 58 0 39 10 50 1.37 CTCTGTCT chr1 42501621 42501656 trf 10 3.7 10 85 14 56 0 40 8 51 1.33 TCTCTCTGTC chr1 42504102 42504153 trf 7 7.0 7 78 8 57 43 0 3 52 1.19 TATATAT chr1 42506691 42506952 trf 6 42.2 6 92 4 263 49 0 50 0 1.06 GAAGAG chr1 42506967 42507094 trf 6 20.5 6 93 6 218 82 0 17 0 0.67 AAAGAA chr1 42506971 42507095 trf 1 124.0 1 65 0 59 83 0 16 0 0.66 A chr1 42507824 42507891 trf 2 33.5 2 100 0 134 49 0 0 50 1.00 TA chr1 42508766 42508808 trf 2 21.0 2 100 0 84 0 50 0 50 1.00 TC chr1 42510444 42510505 trf 12 4.9 12 70 7 50 49 14 3 32 1.60 ATATATACATAT chr1 42521918 42522087 trf 8 20.8 8 73 10 83 11 2 37 49 1.52 GTGTGTAT chr1 42521921 42521965 trf 12 3.5 12 79 11 52 15 2 31 50 1.57 TGTATGTATGTT chr1 42521988 42522088 trf 2 50.0 2 81 0 110 5 3 42 50 1.39 TG chr1 42531697 42531748 trf 4 12.8 4 100 0 102 49 0 25 25 1.51 GATA chr1 42533981 42534016 trf 6 5.8 6 86 0 52 37 2 11 48 1.54 TATATG chr1 42534038 42534091 trf 6 8.7 6 79 4 52 30 18 1 49 1.59 CTATAT chr1 42536962 42536988 trf 12 2.2 12 100 0 52 0 0 65 34 0.93 TGGGTGGGTGTG chr1 42545237 42545275 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 42545274 42545310 trf 12 3.0 12 95 0 63 50 44 0 5 1.25 CACATACACACA chr1 42545274 42545310 trf 2 18.0 2 88 0 54 50 44 0 5 1.25 CA chr1 42545629 42545682 trf 12 4.4 12 78 0 52 30 0 35 33 1.58 TGGTGATAATGA chr1 42545707 42545803 trf 2 48.5 2 91 2 140 46 1 4 47 1.28 AT chr1 42545921 42546142 trf 9 24.1 9 68 10 90 23 4 42 29 1.74 GATGGTGAT chr1 42545921 42546193 trf 3 89.3 3 67 9 68 24 4 41 29 1.75 GAT chr1 42546228 42546299 trf 6 11.8 6 81 0 61 18 15 49 16 1.80 GATGGC chr1 42547384 42547434 trf 2 24.5 2 87 4 73 54 44 0 2 1.11 AC chr1 42547433 42547496 trf 4 15.8 4 96 0 117 74 0 1 23 0.90 AAAT chr1 42549968 42550014 trf 2 23.0 2 95 0 83 2 0 50 47 1.13 GT chr1 42553356 42553695 trf 8 41.6 8 68 17 121 20 3 29 47 1.66 TGTGTATG chr1 42553360 42553698 trf 10 33.0 10 68 11 157 20 3 29 47 1.66 TATGTGTGTA chr1 42554485 42554549 trf 2 33.5 2 78 9 71 45 48 0 6 1.27 AC chr1 42556872 42556947 trf 4 18.8 4 97 0 141 74 0 25 0 0.82 AAAG chr1 42557691 42557725 trf 9 3.7 9 84 7 50 26 14 23 35 1.94 TGTCAGATA chr1 42557698 42557731 trf 10 3.4 10 83 8 50 24 15 21 39 1.91 TATGTCAGTC chr1 42562999 42563046 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 42563045 42563086 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 42568063 42568113 trf 3 16.7 3 100 0 100 0 0 32 68 0.90 TTG chr1 42568591 42568672 trf 6 13.5 6 100 0 162 33 0 16 50 1.45 TATGTA chr1 42577645 42577675 trf 2 15.0 2 92 0 51 53 0 46 0 1.00 GA chr1 42577681 42577719 trf 3 12.7 3 94 0 67 36 0 63 0 0.95 AGG chr1 42580537 42580564 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 42585667 42585718 trf 3 17.0 3 100 0 102 33 0 0 66 0.92 TAT chr1 42586608 42586660 trf 2 26.0 2 96 0 95 0 48 0 51 1.00 TC chr1 42588487 42588516 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 42594298 42594351 trf 10 5.3 10 88 0 79 32 18 20 28 1.97 GCACATGTAT chr1 42594453 42594494 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 42596052 42596098 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 42596104 42596131 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 42598099 42598195 trf 2 50.5 2 78 13 87 1 57 0 41 1.06 CT chr1 42598405 42598462 trf 2 28.5 2 100 0 114 49 50 0 0 1.00 CA chr1 42598742 42598789 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 42600866 42600912 trf 9 4.7 10 81 13 51 54 0 45 0 0.99 GAAGAGGAAA chr1 42603000 42603126 trf 12 9.8 13 74 17 54 2 56 0 40 1.18 TCCTCCCTTCTCC chr1 42603022 42603161 trf 3 46.7 3 69 12 63 2 58 0 38 1.13 TCC chr1 42603570 42603615 trf 3 15.0 3 100 0 90 0 0 33 66 0.92 GTT chr1 42607486 42607576 trf 2 45.0 2 95 0 81 38 48 0 12 1.41 AC chr1 42607687 42607719 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 42607910 42607940 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 42610475 42610516 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 42610515 42610542 trf 2 13.5 2 100 0 54 48 51 0 0 1.00 CA chr1 42610904 42610998 trf 2 48.0 2 90 4 138 44 0 55 0 0.99 GA chr1 42614249 42614297 trf 2 23.5 2 95 4 87 0 2 47 50 1.12 TG chr1 42620786 42620813 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 42625362 42625389 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 42625388 42625431 trf 2 21.5 2 100 0 86 48 0 51 0 1.00 GA chr1 42627619 42627678 trf 2 29.5 2 100 0 118 0 0 49 50 1.00 TG chr1 42628784 42628840 trf 2 28.0 2 92 0 94 0 53 0 46 1.00 CT chr1 42629339 42629402 trf 2 31.5 2 96 0 117 49 0 50 0 1.00 AG chr1 42632673 42632910 trf 4 59.2 4 90 0 366 0 4 44 51 1.21 TGTG chr1 42634873 42634916 trf 2 21.5 2 100 0 86 0 48 0 51 1.00 TC chr1 42635497 42635523 trf 5 5.2 5 100 0 52 0 23 38 38 1.55 CTGTG chr1 42639034 42639075 trf 2 20.5 2 100 0 82 0 51 0 48 1.00 CT chr1 42639074 42639113 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 42639669 42639717 trf 4 12.0 4 95 0 87 72 0 27 0 0.84 AAGA chr1 42639727 42639779 trf 4 13.0 4 100 0 104 25 0 75 0 0.81 GAGG chr1 42639779 42640103 trf 8 40.5 8 99 0 549 63 0 36 0 0.94 AAGGAAGA chr1 42641284 42641315 trf 4 7.8 4 100 0 62 51 0 25 22 1.48 AGAT chr1 42643232 42643276 trf 5 8.8 5 94 0 70 77 18 4 0 0.94 AAAAC chr1 42651327 42651356 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 42653021 42653066 trf 2 22.5 2 100 0 90 48 0 51 0 1.00 GA chr1 42653997 42654031 trf 12 2.8 12 86 0 50 64 2 32 0 1.08 AAGAGAGAGAAA chr1 42654495 42654521 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 42656414 42656448 trf 7 4.9 7 92 7 52 0 0 23 76 0.79 TTTGTTG chr1 42659216 42659288 trf 2 36.0 2 87 5 101 45 51 1 1 1.18 CA chr1 42665775 42665809 trf 3 11.3 3 100 0 68 0 0 67 32 0.91 GGT chr1 42666176 42666257 trf 12 7.0 12 72 8 60 4 24 20 49 1.69 GTCTCTGTGTCT chr1 42668660 42668723 trf 4 15.8 4 100 0 126 49 0 50 0 1.00 AGGA chr1 42668756 42668834 trf 3 26.3 3 75 12 54 34 0 61 3 1.14 AGG chr1 42670803 42670971 trf 4 42.0 4 93 2 212 67 0 32 0 0.96 AAGA chr1 42670860 42670894 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 42671286 42671314 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 42672495 42672531 trf 6 5.8 6 87 6 54 86 13 0 0 0.58 AAAAAC chr1 42672495 42672535 trf 8 4.9 8 82 17 55 85 15 0 0 0.61 AAAAACAA chr1 42672826 42672858 trf 12 2.7 12 95 0 55 25 50 0 25 1.50 CTTACCTACCCA chr1 42672868 42672896 trf 11 2.5 11 100 0 56 28 28 7 35 1.84 CATCTAGCTAT chr1 42673869 42673900 trf 2 15.5 2 100 0 62 0 0 51 48 1.00 GT chr1 42673899 42673954 trf 2 27.5 2 100 0 110 49 0 50 0 1.00 GA chr1 42674435 42674481 trf 2 23.0 2 100 0 92 50 50 0 0 1.00 AC chr1 42675645 42675692 trf 7 6.4 7 83 9 58 42 2 2 53 1.25 ATATTAT chr1 42678627 42678707 trf 8 10.2 8 89 5 119 0 33 0 66 0.92 TTCCTTTC chr1 42681435 42681465 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 42688084 42688134 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 42688357 42688396 trf 3 13.7 3 89 10 64 69 30 0 0 0.89 AAC chr1 42688653 42688704 trf 2 25.5 2 83 0 66 49 43 0 7 1.32 CA chr1 42689744 42689795 trf 2 25.5 2 100 0 102 50 0 49 0 1.00 AG chr1 42691045 42691121 trf 2 38.0 2 100 0 152 0 50 0 50 1.00 TC chr1 42692630 42692683 trf 2 26.5 2 100 0 106 0 50 0 49 1.00 CT chr1 42692983 42693027 trf 7 6.4 7 89 5 63 0 0 22 77 0.77 TTGGTTT chr1 42694573 42694626 trf 12 4.4 12 92 0 61 39 50 9 0 1.35 CACACGCACGCA chr1 42694583 42694628 trf 2 22.5 2 90 0 72 44 51 4 0 1.21 CA chr1 42695838 42695906 trf 2 35.0 2 73 5 59 47 1 48 2 1.26 GA chr1 42697058 42697122 trf 3 21.3 3 86 0 65 0 31 59 9 1.29 GCG chr1 42697232 42697292 trf 3 21.0 3 88 6 81 1 26 71 0 0.95 GGC chr1 42697437 42697480 trf 9 4.8 9 83 8 52 2 58 27 11 1.46 CCGCCGCTG chr1 42697454 42697486 trf 12 2.7 12 95 0 55 0 53 34 12 1.39 GCCGCTGCTGCC chr1 42697706 42697753 trf 3 15.7 3 81 0 58 4 57 34 4 1.38 GCC chr1 42698768 42698815 trf 3 15.7 3 81 0 58 2 59 31 6 1.34 GCC chr1 42700626 42700718 trf 4 22.8 4 80 10 98 0 29 1 69 0.95 TTTC chr1 42701604 42701644 trf 3 13.7 3 94 5 73 0 0 30 70 0.88 TTG chr1 42701793 42701841 trf 5 9.0 5 79 20 53 2 0 22 75 0.91 GTTTT chr1 42702596 42702663 trf 2 33.5 2 96 0 125 0 49 1 49 1.10 CT chr1 42704131 42704190 trf 2 30.5 2 93 6 104 0 0 50 49 1.00 TG chr1 42704810 42704838 trf 6 4.7 6 100 0 56 0 14 0 85 0.59 TTTTCT chr1 42706190 42706272 trf 4 20.8 4 92 2 121 50 4 25 19 1.68 AGAT chr1 42709103 42709131 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 AC chr1 42711341 42711381 trf 1 40.0 1 100 0 80 100 0 0 0 0.00 A chr1 42712940 42713001 trf 2 30.5 2 96 0 113 1 0 47 50 1.10 TG chr1 42717538 42717577 trf 5 7.8 5 86 11 53 76 23 0 0 0.78 CAAAA chr1 42720595 42720747 trf 6 25.3 6 98 0 295 0 50 15 33 1.50 CTGCCT chr1 42721968 42722020 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 42725561 42725735 trf 3 58.0 3 72 15 119 36 0 62 1 1.03 GAG chr1 42732085 42732145 trf 2 30.0 2 89 0 93 50 5 0 45 1.23 AT chr1 42733595 42733628 trf 2 16.5 2 93 0 57 3 0 48 48 1.17 GT chr1 42733627 42733680 trf 2 27.0 2 96 3 99 50 0 49 0 1.00 GA chr1 42734311 42734364 trf 2 26.5 2 100 0 106 0 49 0 50 1.00 TC chr1 42737332 42737413 trf 2 40.5 2 92 0 135 49 1 48 1 1.17 AG chr1 42738121 42738152 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 42738388 42738437 trf 2 24.5 2 95 0 89 0 46 2 51 1.12 TC chr1 42747954 42747992 trf 12 3.2 12 88 0 58 68 0 31 0 0.90 AAGAAAGAAAGG chr1 42748722 42748749 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 42749284 42749325 trf 2 20.5 2 100 0 82 48 0 51 0 1.00 GA chr1 42750441 42750550 trf 2 54.5 2 88 3 148 46 0 52 0 1.06 GA chr1 42759093 42759128 trf 4 8.8 4 100 0 70 77 0 0 22 0.78 AAAT chr1 42760161 42760205 trf 2 22.0 2 95 0 79 0 47 0 52 1.00 CT chr1 42760204 42760239 trf 2 17.5 2 100 0 70 48 0 0 51 1.00 TA chr1 42760238 42760267 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 42763438 42763499 trf 2 31.0 2 96 3 115 49 0 50 0 1.00 AG chr1 42763827 42763868 trf 4 11.0 4 85 15 61 21 0 0 78 0.76 ATTT chr1 42764263 42764299 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 CT chr1 42765610 42765642 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 42765789 42765827 trf 3 12.7 3 88 0 58 68 28 2 0 1.03 AAC chr1 42770397 42770434 trf 3 12.3 3 94 0 65 0 0 29 70 0.88 TGT chr1 42770969 42770998 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 42774740 42774781 trf 12 3.4 12 96 0 73 48 7 2 41 1.44 ATATATATATAC chr1 42774746 42774783 trf 6 6.2 6 87 0 56 51 10 0 37 1.37 ATATAC chr1 42774798 42774851 trf 4 13.2 4 100 0 106 50 0 24 24 1.49 ATAG chr1 42775737 42775955 trf 4 54.8 4 70 0 96 42 41 1 14 1.54 ACAC chr1 42775737 42775955 trf 6 36.5 6 70 0 96 42 41 1 14 1.54 ACACAC chr1 42780102 42780132 trf 4 7.5 4 92 0 51 53 0 46 0 1.00 AGGA chr1 42785260 42785293 trf 4 8.5 4 93 6 59 78 21 0 0 0.75 AAAC chr1 42785532 42785578 trf 2 23.0 2 95 0 83 0 47 0 52 1.00 CT chr1 42785577 42785623 trf 2 23.0 2 95 0 83 2 0 47 50 1.13 TG chr1 42785942 42785976 trf 2 17.0 2 100 0 68 0 50 0 50 1.00 CT chr1 42785975 42786027 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 42788077 42788175 trf 12 8.0 12 65 20 51 41 40 4 13 1.63 ACATACACACAC chr1 42788952 42788983 trf 6 5.2 6 92 0 53 19 0 48 32 1.49 GTGATG chr1 42791868 42791919 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 42792656 42792703 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 42792702 42792739 trf 2 18.5 2 94 0 65 2 0 45 51 1.15 TG chr1 42792706 42792744 trf 12 3.2 12 92 0 58 7 0 42 50 1.31 TGTGTGTGTGTA chr1 42794766 42794801 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 42797201 42797233 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 42797245 42797404 trf 4 40.8 4 89 5 254 49 2 25 22 1.63 AGAT chr1 42798625 42798710 trf 4 20.2 4 76 9 71 23 3 25 47 1.68 TATG chr1 42806619 42806648 trf 4 7.2 4 100 0 58 27 24 0 48 1.51 ATTC chr1 42807570 42807664 trf 6 15.5 6 78 12 61 1 68 0 30 0.97 CCTCTC chr1 42810974 42811046 trf 2 36.0 2 91 0 99 43 50 4 2 1.36 AC chr1 42812344 42812416 trf 2 36.5 2 83 2 92 45 47 1 5 1.34 CA chr1 42815918 42815963 trf 5 9.0 5 100 0 90 0 0 20 80 0.72 TTGTT chr1 42816259 42816297 trf 4 9.8 4 85 5 51 2 2 18 76 1.02 TTTG chr1 42818819 42818946 trf 2 63.5 2 92 0 209 3 0 45 50 1.20 TG chr1 42821280 42821351 trf 2 35.5 2 91 0 115 0 4 49 46 1.21 TG chr1 42824457 42824493 trf 5 7.8 5 93 6 51 80 19 0 0 0.71 AAAAC chr1 42826186 42826236 trf 4 12.5 4 81 8 57 72 24 2 2 1.06 CAAA chr1 42827851 42827895 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 42830099 42830404 trf 4 75.8 4 73 19 172 0 64 0 35 0.93 CTCC chr1 42830115 42830432 trf 6 52.5 6 77 15 262 0 63 0 36 0.95 CTCCCT chr1 42830385 42830434 trf 4 12.2 4 91 0 71 0 57 0 42 0.99 CTCT chr1 42837204 42837239 trf 4 8.8 4 100 0 70 0 25 22 51 1.48 TCTG chr1 42837241 42837284 trf 4 10.8 4 89 0 68 23 2 23 51 1.60 TATG chr1 42837859 42837899 trf 2 20.0 2 94 0 71 50 47 0 2 1.14 CA chr1 42840035 42840078 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 42840760 42840795 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 42841552 42841597 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 42844275 42844472 trf 10 20.3 10 71 13 117 2 29 16 50 1.58 TCTGTCTGTC chr1 42844279 42844473 trf 6 32.3 6 68 19 66 2 30 16 50 1.58 TCTGTC chr1 42844372 42844454 trf 4 21.8 4 75 16 68 2 26 21 48 1.63 TCTG chr1 42845438 42845486 trf 5 10.2 5 86 8 50 2 0 22 75 0.91 TTTTG chr1 42845458 42845483 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TGTT chr1 42845893 42846005 trf 4 27.8 4 88 1 80 0 58 0 41 0.98 CTTC chr1 42845900 42846000 trf 4 24.8 4 91 2 83 0 62 0 38 0.96 CCTC chr1 42845904 42846004 trf 12 8.2 12 77 2 92 0 61 0 39 0.96 CCTCCCTCCCTT chr1 42850367 42850501 trf 4 32.5 4 86 5 187 44 0 27 27 1.54 ATAG chr1 42851781 42851827 trf 2 23.0 2 100 0 92 0 0 50 50 1.00 TG chr1 42855297 42855326 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 42855417 42855460 trf 2 21.5 2 100 0 86 48 0 0 51 1.00 TA chr1 42858782 42858822 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 42859299 42859337 trf 4 10.0 4 83 11 53 0 0 18 81 0.69 GTTT chr1 42859308 42859340 trf 7 4.4 7 96 4 55 0 0 15 84 0.63 TTTGTTT chr1 42863347 42863378 trf 4 7.8 4 100 0 62 22 0 25 51 1.48 TGTA chr1 42863670 42863702 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 AC chr1 42867104 42867140 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 42867781 42867812 trf 4 7.8 4 92 0 53 3 25 19 51 1.62 TCTG chr1 42869849 42869919 trf 10 7.0 10 78 15 58 0 0 21 78 0.75 GTTTTGTTTT chr1 42873928 42873986 trf 2 29.0 2 85 0 80 0 50 0 50 1.00 CT chr1 42873986 42874023 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 42882687 42882712 trf 3 8.3 3 100 0 50 36 64 0 0 0.94 ACC chr1 42884431 42884510 trf 12 6.6 12 94 0 104 31 0 68 0 0.90 AGGAAGGGAGGG chr1 42884435 42884494 trf 4 14.8 4 100 0 118 25 0 74 0 0.82 AGGG chr1 42884491 42884516 trf 4 6.2 4 100 0 50 52 0 48 0 1.00 AGGA chr1 42903468 42903501 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 42915794 42915833 trf 4 9.8 4 100 0 78 0 48 0 51 1.00 CTTC chr1 42915799 42915848 trf 12 4.1 12 91 0 53 0 38 0 61 0.96 TTCCTTCCTTTT chr1 42919800 42919847 trf 2 24.0 2 95 4 87 0 51 0 48 1.00 TC chr1 42922095 42922159 trf 2 32.0 2 93 0 110 50 3 0 46 1.17 AT chr1 42926106 42926162 trf 2 28.5 2 96 3 105 50 50 0 0 1.00 AC chr1 42926916 42926964 trf 7 7.0 7 90 9 73 0 0 14 85 0.60 GTTTTTT chr1 42926918 42926955 trf 6 5.8 6 96 3 56 0 0 13 86 0.57 TTTTTG chr1 42934426 42934475 trf 2 24.5 2 95 0 53 10 0 38 51 1.36 TG chr1 42934474 42934539 trf 2 32.5 2 90 0 103 44 0 4 50 1.22 TA chr1 42947331 42947504 trf 2 86.5 2 72 11 113 45 43 2 9 1.48 CA chr1 42952393 42952450 trf 2 28.5 2 100 0 114 49 50 0 0 1.00 CA chr1 42954102 42954134 trf 12 2.8 11 90 9 55 0 9 0 90 0.45 TTTTTTTTTCT chr1 42955595 42955626 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 42957952 42957994 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 42958211 42958253 trf 12 3.4 12 78 15 50 28 0 45 26 1.54 GATGGATAGATG chr1 42958352 42958435 trf 2 42.0 2 88 7 125 49 1 2 46 1.22 AT chr1 42959539 42959581 trf 4 10.5 4 84 0 57 0 66 0 33 0.92 CTCC chr1 42963201 42963292 trf 4 22.5 4 95 2 164 72 0 27 0 0.85 AGAA chr1 42964794 42964838 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 42972258 42972329 trf 2 35.5 2 100 0 142 49 0 0 50 1.00 TA chr1 42980858 42980900 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 TA chr1 42980899 42980928 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 42981044 42981089 trf 2 22.5 2 100 0 90 51 0 48 0 1.00 AG chr1 42984849 42984910 trf 2 30.5 2 93 0 104 1 1 47 49 1.21 TG chr1 42987099 42987138 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 42989420 42989473 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 42992940 42993017 trf 2 39.0 2 89 7 122 48 49 0 2 1.15 AC chr1 42996619 42996647 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 43001203 43001241 trf 2 19.0 2 100 0 76 50 0 0 50 1.00 AT chr1 43004070 43004116 trf 2 23.5 2 95 4 85 50 50 0 0 1.00 AC chr1 43013632 43013659 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 43014073 43014112 trf 6 6.5 6 82 11 53 79 17 2 0 0.84 AAAAAC chr1 43014074 43014116 trf 12 3.7 11 85 14 59 78 19 2 0 0.86 AAAACAAAAAC chr1 43016634 43016659 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 43018715 43018767 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 43022165 43022211 trf 2 23.0 2 100 0 92 0 50 0 50 1.00 TC chr1 43022208 43022248 trf 4 10.0 4 94 0 71 0 72 0 27 0.85 CTCC chr1 43025165 43025203 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 43035767 43035794 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 43035872 43035902 trf 4 7.5 4 100 0 60 76 0 0 23 0.78 AAAT chr1 43037160 43037189 trf 8 3.8 8 90 9 51 48 27 13 10 1.75 ACCAAGTA chr1 43038586 43038711 trf 4 31.5 4 94 1 189 69 0 30 0 0.89 AGAA chr1 43042617 43042707 trf 2 45.0 2 97 0 171 48 0 51 0 1.00 GA chr1 43043402 43043437 trf 2 17.5 2 93 0 61 48 48 0 2 1.16 CA chr1 43064835 43064874 trf 2 19.5 2 100 0 78 0 0 51 48 1.00 GT chr1 43065738 43065802 trf 2 32.0 2 96 0 119 50 48 0 1 1.10 CA chr1 43070068 43070120 trf 4 13.0 4 100 0 104 50 25 0 25 1.50 ACAT chr1 43076239 43076294 trf 2 27.5 2 100 0 110 50 49 0 0 1.00 AC chr1 43079448 43079486 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 43086600 43086626 trf 5 5.2 5 100 0 52 0 0 42 57 0.98 GTTTG chr1 43088167 43088199 trf 2 16.0 2 93 0 55 3 0 46 50 1.17 TG chr1 43088198 43088245 trf 2 23.5 2 100 0 94 48 0 51 0 1.00 GA chr1 43090394 43090421 trf 4 6.8 4 100 0 54 77 22 0 0 0.76 AAAC chr1 43100144 43100193 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 43102075 43102112 trf 4 8.8 4 94 5 56 0 0 21 78 0.75 TTTG chr1 43112575 43112629 trf 4 13.2 4 88 3 72 48 22 3 25 1.67 ACAT chr1 43112935 43112975 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 43114016 43114058 trf 12 3.2 12 90 10 57 9 33 33 23 1.87 GCTTCCTGCAGG chr1 43116964 43117006 trf 11 3.8 11 77 22 52 16 78 4 0 0.91 CCCCCACCCAG chr1 43116976 43117012 trf 5 6.8 5 87 12 54 16 80 2 0 0.83 CCCCA chr1 43119986 43120016 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 AC chr1 43121593 43121647 trf 6 8.7 6 82 13 56 87 12 0 0 0.56 AAAACA chr1 43122749 43122789 trf 2 20.0 2 89 0 62 47 47 5 0 1.24 AC chr1 43124455 43124480 trf 4 6.2 4 100 0 50 76 24 0 0 0.80 AAAC chr1 43125654 43125692 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 43128795 43128969 trf 5 34.8 5 98 0 249 54 0 45 0 1.00 AGAAG chr1 43130044 43130112 trf 12 5.2 13 72 18 52 1 70 0 27 0.96 CTTCCCCCCTCCC chr1 43137881 43137930 trf 2 24.5 2 100 0 98 0 51 0 48 1.00 CT chr1 43138848 43138882 trf 6 5.7 6 96 0 59 20 0 44 35 1.52 TGATGG chr1 43140689 43140763 trf 10 7.6 10 80 6 80 50 12 36 1 1.48 GAGAGACAGA chr1 43144984 43145026 trf 9 4.4 10 85 8 61 0 0 19 80 0.70 TTTTGTTTTG chr1 43144984 43145026 trf 5 8.8 5 84 10 61 0 0 19 80 0.70 TTTTG chr1 43156293 43156328 trf 4 9.0 4 93 6 63 51 25 22 0 1.48 GACA chr1 43156337 43156385 trf 4 12.0 4 86 0 51 39 8 50 2 1.44 AGAG chr1 43156352 43156385 trf 10 3.3 10 95 0 57 42 6 51 0 1.26 GAGCGAGAGA chr1 43161875 43161923 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 43170227 43170256 trf 4 7.2 4 100 0 58 0 0 24 75 0.80 TGTT chr1 43171698 43171740 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 43173201 43173257 trf 3 18.7 3 100 0 112 32 0 0 67 0.91 TTA chr1 43178041 43178133 trf 4 23.2 4 86 2 87 45 9 25 19 1.81 GATA chr1 43183370 43183609 trf 6 39.0 6 91 3 316 0 23 0 76 0.79 TTTTTC chr1 43185898 43186021 trf 2 61.5 2 93 0 210 0 3 47 49 1.17 TG chr1 43186787 43186856 trf 5 13.6 5 78 1 57 1 68 0 30 0.99 CCCTC chr1 43187337 43187447 trf 4 27.2 4 87 7 143 0 72 0 27 0.85 CCCT chr1 43187339 43187512 trf 12 14.3 12 81 4 107 0 63 0 36 0.95 CTCCCTCCCTCT chr1 43187414 43187499 trf 4 21.2 4 85 0 98 0 50 0 49 1.00 CTCT chr1 43197695 43198052 trf 10 36.5 10 71 18 211 1 57 0 40 1.12 CTCTCCCTCT chr1 43197695 43198063 trf 8 43.8 8 70 17 182 1 56 0 41 1.12 CTCTCTCC chr1 43200347 43201309 trf 4 251.0 4 85 9 970 41 0 58 0 1.00 AGGA chr1 43205011 43205060 trf 2 24.5 2 95 0 89 48 48 0 2 1.12 CA chr1 43205057 43205099 trf 3 14.0 3 100 0 84 33 66 0 0 0.92 CAC chr1 43208095 43208164 trf 3 23.3 3 73 8 61 28 0 71 0 0.87 GAG chr1 43210227 43210274 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 43216593 43216623 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 43217525 43217569 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 TC chr1 43217571 43217608 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 43219821 43219970 trf 2 75.0 2 72 1 93 8 6 39 45 1.60 TG chr1 43220748 43220810 trf 4 15.5 4 75 12 56 1 48 3 46 1.28 TCCT chr1 43223497 43223589 trf 2 46.0 2 88 0 139 47 3 2 46 1.30 AT chr1 43232512 43232580 trf 2 34.0 2 96 0 127 1 50 0 48 1.10 TC chr1 43232579 43232637 trf 2 29.0 2 96 0 107 50 48 1 0 1.11 CA chr1 43234600 43234709 trf 6 20.3 6 76 20 91 53 0 46 0 1.00 GAGGAA chr1 43234620 43234725 trf 6 17.5 6 81 3 95 58 0 41 0 0.98 GAAGAA chr1 43234626 43234727 trf 9 11.1 9 71 20 59 58 0 41 0 0.98 GAAGAGAAA chr1 43236609 43236694 trf 2 42.5 2 71 4 55 8 2 38 50 1.45 TG chr1 43236845 43236991 trf 2 74.5 2 69 6 66 8 4 45 42 1.53 TG chr1 43238214 43238307 trf 4 23.2 4 97 0 141 45 0 5 49 1.25 ATAT chr1 43254627 43254685 trf 2 29.5 2 92 3 100 0 0 48 51 1.00 TG chr1 43259634 43259678 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 AC chr1 43261750 43261786 trf 3 12.3 3 88 5 56 69 27 0 2 1.02 AAC chr1 43261783 43261818 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 43267094 43267129 trf 4 8.8 4 100 0 70 0 0 22 77 0.78 TTTG chr1 43276510 43276555 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 43277863 43277942 trf 2 37.5 2 82 9 95 49 7 0 43 1.31 AT chr1 43277872 43277942 trf 11 6.7 11 74 20 53 47 8 0 44 1.34 TATATATACAC chr1 43277977 43278006 trf 2 14.5 2 100 0 58 48 51 0 0 1.00 CA chr1 43279077 43279110 trf 5 6.8 5 86 6 50 3 0 18 78 0.87 TTTTG chr1 43279107 43279134 trf 4 6.8 4 100 0 54 0 22 0 77 0.76 TTTC chr1 43286534 43286650 trf 4 30.0 4 85 6 105 0 58 0 40 1.04 CTCT chr1 43286536 43286651 trf 10 11.9 10 67 21 50 0 58 0 40 1.04 CTCTCTCTTC chr1 43290166 43290233 trf 2 33.5 2 90 0 107 46 50 0 2 1.16 AC chr1 43291541 43291584 trf 4 10.8 4 84 0 50 30 25 2 41 1.68 TATC chr1 43301801 43301836 trf 2 17.5 2 93 0 61 48 48 0 2 1.16 AC chr1 43303521 43303551 trf 4 7.5 4 100 0 60 76 23 0 0 0.78 AAAC chr1 43305152 43305225 trf 2 36.5 2 97 0 137 1 49 0 49 1.09 TC chr1 43305222 43305253 trf 12 2.6 12 94 0 53 0 6 41 51 1.27 TCTGTGTGTGTG chr1 43306281 43306361 trf 2 40.5 2 91 2 126 0 46 1 52 1.08 CT chr1 43306360 43306399 trf 2 19.5 2 100 0 78 48 51 0 0 1.00 CA chr1 43309083 43309121 trf 2 19.0 2 100 0 76 0 50 0 50 1.00 TC chr1 43309120 43309155 trf 2 17.5 2 100 0 70 48 51 0 0 1.00 CA chr1 43312380 43312426 trf 3 15.3 3 100 0 92 32 67 0 0 0.91 CCA chr1 43313454 43313507 trf 2 26.5 2 100 0 106 0 49 0 50 1.00 TC chr1 43315177 43315256 trf 4 20.2 4 92 5 126 49 2 25 22 1.62 ATAG chr1 43317807 43317886 trf 5 15.8 5 98 0 140 0 77 0 22 0.77 CCCTC chr1 43325717 43325770 trf 8 6.6 8 93 0 70 24 0 41 33 1.55 GTATGTAG chr1 43325725 43325768 trf 12 3.6 12 90 0 68 25 0 44 30 1.55 GTAGGTAGGTAG chr1 43331461 43331499 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 43332124 43332163 trf 5 7.8 5 100 0 78 17 0 0 82 0.68 TTTTA chr1 43334733 43334760 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 43334759 43334796 trf 2 18.5 2 94 0 65 51 45 0 2 1.15 AC chr1 43334795 43334822 trf 2 13.5 2 100 0 54 51 0 0 48 1.00 AT chr1 43338870 43339013 trf 6 23.5 6 94 2 250 0 65 0 34 0.93 CTCTCC chr1 43339683 43339737 trf 6 9.5 6 82 11 60 0 0 22 77 0.76 GTTTTT chr1 43339685 43339737 trf 11 4.6 11 83 9 52 0 0 21 78 0.74 TTTTGTTGTTG chr1 43346051 43346076 trf 5 5.0 5 100 0 50 60 0 20 20 1.37 TAGAA chr1 43352584 43352626 trf 5 8.6 5 92 7 61 0 0 19 80 0.70 TTTGT chr1 43353081 43353155 trf 3 24.7 3 100 0 148 33 33 32 0 1.58 CAG chr1 43361743 43361770 trf 5 5.4 5 100 0 54 0 62 18 18 1.32 CCCTG chr1 43362536 43362694 trf 4 40.0 4 91 2 158 64 0 35 0 0.94 AAGA chr1 43365182 43365226 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 43366772 43366822 trf 2 25.0 2 91 0 82 2 0 46 52 1.12 GT chr1 43371087 43371120 trf 2 16.5 2 100 0 66 51 48 0 0 1.00 AC chr1 43371733 43371788 trf 2 27.5 2 100 0 110 0 50 0 49 1.00 CT chr1 43375497 43375539 trf 4 11.0 4 90 10 70 0 0 23 76 0.79 GTTT chr1 43376994 43377085 trf 4 22.8 4 88 0 101 1 8 41 48 1.41 TGTG chr1 43377845 43377904 trf 4 14.8 4 100 0 118 50 0 49 0 1.00 GAAG chr1 43389484 43389547 trf 2 31.5 2 96 0 117 1 0 47 50 1.10 TG chr1 43392306 43392348 trf 2 21.0 2 90 9 68 0 2 47 50 1.14 GT chr1 43403375 43403422 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 43403718 43403761 trf 7 6.0 7 84 15 61 0 0 13 86 0.58 GTTTTTT chr1 43406530 43406563 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 43407222 43407291 trf 12 5.6 12 77 6 57 34 1 14 49 1.53 TATATATGTGTA chr1 43407232 43407298 trf 2 33.0 2 87 0 60 39 1 10 48 1.47 TA chr1 43408162 43408217 trf 5 11.0 5 100 0 110 0 40 0 60 0.97 TTTCC chr1 43414093 43414142 trf 2 24.5 2 100 0 98 51 48 0 0 1.00 AC chr1 43414141 43414198 trf 2 28.5 2 100 0 114 50 0 49 0 1.00 AG chr1 43415314 43415352 trf 2 19.0 2 94 0 67 0 47 0 52 1.00 TC chr1 43415355 43415415 trf 2 30.0 2 96 0 111 50 48 0 1 1.11 AC chr1 43420866 43421167 trf 6 50.2 6 86 0 323 21 50 11 16 1.76 CCTAGC chr1 43422175 43422216 trf 4 10.2 4 100 0 82 51 24 0 24 1.49 ATAC chr1 43423903 43424012 trf 4 27.2 4 74 10 62 44 0 55 0 1.06 AAGG chr1 43423935 43424066 trf 8 16.4 8 90 0 181 32 0 67 0 0.91 AGGGAGGG chr1 43430536 43430650 trf 10 10.9 10 71 15 79 35 1 63 0 1.05 AGAGAGAGGG chr1 43430536 43430627 trf 12 8.2 12 76 14 88 38 2 59 0 1.10 AGAGAGAGGGAG chr1 43432327 43432392 trf 2 32.5 2 96 0 121 1 0 49 49 1.10 GT chr1 43432391 43432432 trf 2 20.5 2 100 0 82 48 0 51 0 1.00 GA chr1 43432596 43432642 trf 2 23.5 2 95 4 85 50 50 0 0 1.00 AC chr1 43439788 43440085 trf 6 51.8 6 84 9 163 45 25 18 11 1.82 ACATAG chr1 43439856 43439973 trf 12 9.9 12 94 3 211 50 31 17 0 1.52 AGACACAGACAC chr1 43442121 43442166 trf 8 5.5 8 89 5 72 0 0 15 84 0.62 TTTTTGTT chr1 43442123 43442163 trf 4 9.8 4 86 2 53 0 0 17 82 0.67 TTTG chr1 43442127 43442166 trf 12 3.2 12 89 10 62 0 0 15 84 0.62 TTTTGTTTGTTT chr1 43443348 43443389 trf 2 20.5 2 94 0 73 0 46 0 53 1.00 TC chr1 43444036 43444075 trf 2 19.5 2 100 0 78 0 51 0 48 1.00 CT chr1 43444074 43444115 trf 2 20.5 2 100 0 82 48 51 0 0 1.00 CA chr1 43448517 43448560 trf 4 11.2 4 87 9 63 0 0 18 81 0.69 TGTT chr1 43451920 43451949 trf 2 15.0 2 92 7 51 0 48 0 51 1.00 CT chr1 43459573 43459632 trf 4 14.8 4 78 0 64 0 66 1 32 1.02 CCCT chr1 43459575 43459647 trf 12 5.8 12 76 12 65 0 63 1 34 1.03 CTCCCTCCCTCT chr1 43459575 43459647 trf 8 8.8 8 74 17 58 0 63 1 34 1.03 CTCCCTCT chr1 43462274 43462308 trf 2 17.0 2 100 0 68 50 50 0 0 1.00 AC chr1 43470487 43470513 trf 2 13.0 2 100 0 52 0 0 50 50 1.00 GT chr1 43473951 43473982 trf 2 15.5 2 100 0 62 0 0 48 51 1.00 TG chr1 43476186 43476221 trf 2 17.0 2 94 5 61 2 0 48 48 1.16 GT chr1 43489160 43489238 trf 4 19.5 4 94 5 140 0 51 0 48 1.00 CCTT chr1 43490831 43490856 trf 2 12.5 2 100 0 50 52 0 0 48 1.00 AT chr1 43491503 43491562 trf 4 14.2 4 92 7 100 72 0 27 0 0.84 AGAA chr1 43493926 43493971 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 43493966 43493992 trf 11 2.4 11 100 0 52 7 7 30 53 1.57 TGTGTATTGTC chr1 43495393 43495438 trf 2 22.5 2 95 0 81 48 48 2 0 1.13 CA chr1 43504586 43504624 trf 4 9.8 4 94 5 69 23 0 76 0 0.79 GAGG chr1 43513426 43513483 trf 6 9.5 6 81 14 73 47 17 35 0 1.48 AGAGCA chr1 43520097 43520124 trf 2 13.5 2 100 0 54 0 51 0 48 1.00 CT chr1 43523018 43523057 trf 3 13.0 3 94 0 69 0 64 0 35 0.94 TCC chr1 43523075 43523119 trf 4 11.0 4 90 0 61 6 75 0 18 1.02 CCCT chr1 43524675 43524706 trf 7 4.4 7 91 0 53 0 0 16 83 0.64 TTTGTTT chr1 43529673 43529705 trf 12 2.6 13 85 14 50 0 40 3 56 1.15 TTCCTCCTTGTTC chr1 43537967 43538018 trf 12 4.2 12 94 0 75 5 0 45 49 1.26 GTGTGTGTGTAT chr1 43537967 43538009 trf 2 21.0 2 95 0 75 2 0 47 50 1.14 GT chr1 43544970 43545010 trf 3 13.3 3 100 0 80 0 0 67 32 0.91 GGT chr1 43552773 43552807 trf 2 17.0 2 93 0 59 50 47 0 2 1.16 CA chr1 43570245 43570287 trf 11 3.9 11 81 3 50 42 0 4 52 1.22 TATATATTATA chr1 43574176 43574215 trf 4 10.0 4 83 5 53 25 2 48 23 1.63 GATG chr1 43574203 43574283 trf 4 20.2 4 88 7 119 47 1 27 23 1.59 GATA chr1 43576307 43576342 trf 2 17.5 2 93 0 61 45 51 0 2 1.16 CA chr1 43578958 43579005 trf 9 5.2 9 94 0 85 12 40 12 34 1.82 AGCTCCTTC chr1 43586916 43587085 trf 4 44.2 4 83 9 192 45 0 27 26 1.54 ATAG chr1 43587457 43587482 trf 2 12.5 2 100 0 50 52 0 0 48 1.00 AT chr1 43587481 43587512 trf 2 15.5 2 100 0 62 51 48 0 0 1.00 AC chr1 43587511 43587556 trf 2 22.5 2 100 0 90 51 0 0 48 1.00 AT chr1 43590205 43590369 trf 6 27.7 6 93 1 89 50 0 49 0 1.00 AGGAAG chr1 43590210 43590259 trf 3 16.3 3 95 0 89 36 0 63 0 0.95 AGG chr1 43590257 43590337 trf 3 26.7 3 100 0 160 66 0 33 0 0.92 GAA chr1 43590335 43590372 trf 3 12.7 3 94 5 67 32 0 67 0 0.91 GAG chr1 43593437 43593481 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 43600586 43600648 trf 8 7.6 8 84 10 81 0 37 12 50 1.41 TCTCTCTG chr1 43600586 43600648 trf 2 30.5 2 80 3 52 0 37 12 50 1.41 TC chr1 43600771 43600809 trf 4 10.0 4 83 11 53 76 23 0 0 0.79 CAAA chr1 43600817 43600846 trf 10 2.7 11 89 10 51 75 24 0 0 0.80 AACAACAAAAC chr1 43608787 43608852 trf 2 32.5 2 93 0 112 0 1 46 52 1.10 TG chr1 43640224 43640255 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 43644806 43644933 trf 12 10.3 12 82 5 128 0 62 0 37 0.95 TTCCCTCCCTCC chr1 43644806 43644935 trf 8 16.2 8 81 7 111 0 62 0 37 0.96 TTCCCTCC chr1 43644807 43644917 trf 4 27.8 4 85 1 123 0 65 0 34 0.93 TCCC chr1 43650999 43651061 trf 2 31.5 2 93 3 108 0 51 0 48 1.00 TC chr1 43658349 43658649 trf 6 53.0 6 94 4 235 0 56 0 44 0.99 CCTTTC chr1 43658558 43658649 trf 5 18.2 5 98 0 146 0 45 0 54 0.99 CCTTT chr1 43666719 43666753 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 43672654 43672700 trf 6 7.5 6 92 4 65 2 0 78 19 0.86 GGGGGT chr1 43672767 43672807 trf 2 20.0 2 84 0 53 0 42 7 50 1.30 TC chr1 43672767 43672807 trf 12 3.3 12 92 0 62 0 42 7 50 1.30 TCTCTGTCTCTC chr1 43672808 43672902 trf 4 22.5 4 87 8 134 0 29 0 70 0.88 TTCT chr1 43672878 43672921 trf 4 10.5 4 80 5 50 0 41 0 58 0.98 CTTC chr1 43672940 43672981 trf 5 8.6 5 86 7 50 0 19 0 80 0.71 TTTCT chr1 43676007 43676111 trf 2 52.5 2 90 1 165 3 0 48 48 1.20 TG chr1 43676011 43676149 trf 6 22.7 6 84 8 73 6 2 43 47 1.41 GTGTAT chr1 43684450 43684481 trf 2 15.5 2 100 0 62 0 48 0 51 1.00 TC chr1 43684480 43684558 trf 2 39.0 2 97 0 147 1 0 48 50 1.09 TG chr1 43690409 43690436 trf 3 9.0 3 100 0 54 0 33 33 33 1.58 GCT chr1 43690434 43690551 trf 3 39.0 3 98 0 225 0 34 0 65 0.93 CTT chr1 43693687 43693727 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 CT chr1 43696532 43696570 trf 2 19.0 2 89 10 60 2 47 0 50 1.15 CT chr1 43699224 43699258 trf 9 3.8 9 92 7 52 0 0 20 79 0.73 GTTTTTGTT chr1 43699290 43699318 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 43700238 43700279 trf 2 20.5 2 100 0 82 51 0 48 0 1.00 AG chr1 43700281 43700327 trf 4 11.0 4 81 9 56 69 2 28 0 1.00 AAGA chr1 43700782 43701006 trf 6 37.0 6 86 8 251 63 0 35 0 0.98 AGAAAG chr1 43700931 43701090 trf 4 40.2 4 74 16 73 62 0 37 0 0.95 AGAA chr1 43700942 43701090 trf 8 17.8 8 76 15 99 62 0 37 0 0.96 AAGAAAGG chr1 43700959 43701071 trf 12 9.2 12 80 11 104 60 0 39 0 0.97 AGAAAGGAAGGA chr1 43706197 43706260 trf 4 15.8 4 96 0 117 26 0 73 0 0.84 AGGG chr1 43707892 43707922 trf 4 7.5 4 100 0 60 73 0 0 26 0.84 ATAA chr1 43716950 43716992 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 43724459 43724503 trf 4 11.2 4 90 4 72 0 2 25 72 0.96 GTTT chr1 43731291 43731349 trf 10 5.9 10 86 9 84 22 31 0 46 1.52 TTTCTTCCAA chr1 43735828 43735868 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 43737172 43737197 trf 6 4.2 6 100 0 50 0 16 16 68 1.22 TTTCTG chr1 43744832 43744883 trf 2 25.5 2 100 0 102 49 50 0 0 1.00 CA chr1 43755533 43755572 trf 4 9.8 4 100 0 78 74 0 0 25 0.82 AATA chr1 43759496 43759522 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 43767164 43767200 trf 4 9.0 4 100 0 72 25 0 25 50 1.50 TGTA chr1 43767249 43767310 trf 10 5.7 10 75 21 61 16 3 37 42 1.64 TATGTGTGGA chr1 43788165 43788257 trf 4 23.0 4 95 0 103 0 59 0 40 0.97 CTCT chr1 43788258 43788303 trf 2 22.5 2 100 0 90 51 48 0 0 1.00 AC chr1 43791802 43791915 trf 5 22.8 5 69 8 70 23 2 52 22 1.60 TGAGG chr1 43794489 43794549 trf 2 30.0 2 96 0 111 48 50 1 0 1.11 AC chr1 43797751 43797791 trf 2 20.0 2 100 0 80 0 50 0 50 1.00 TC chr1 43797808 43797888 trf 2 40.0 2 89 0 124 0 5 45 50 1.23 GT chr1 43804349 43804421 trf 3 23.7 3 77 2 54 44 1 54 0 1.08 GAG chr1 43804352 43804473 trf 6 21.0 6 69 14 67 48 0 50 0 1.06 GAGGAA chr1 43804376 43804472 trf 12 7.7 12 74 13 77 48 0 51 0 1.00 GAAGAGGAGGAA chr1 43808307 43808350 trf 4 11.2 4 81 18 56 79 20 0 0 0.74 CAAA chr1 43808539 43808600 trf 10 6.3 10 69 27 51 0 0 26 73 0.83 TTTGTTTTGG chr1 43815484 43815523 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 43822464 43822510 trf 2 23.0 2 90 0 74 2 2 50 45 1.26 GT chr1 43824242 43824272 trf 1 30.0 1 100 0 60 100 0 0 0 0.00 A chr1 43826538 43826580 trf 3 14.0 3 100 0 84 0 33 33 33 1.58 GCT chr1 43826578 43826647 trf 3 23.0 3 96 0 129 0 65 1 33 1.02 CTC chr1 43829762 43829798 trf 2 18.0 2 94 0 63 0 0 47 52 1.00 TG chr1 43834531 43834581 trf 10 4.5 12 76 19 63 52 42 0 6 1.26 CACACAATCACA chr1 43835713 43835739 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 43839114 43839169 trf 4 13.8 4 100 0 110 50 0 25 23 1.49 AGAT chr1 43857450 43857476 trf 12 2.2 12 100 0 52 11 0 38 50 1.39 TATGTGTGTGTG chr1 43859354 43859433 trf 2 39.5 2 79 0 68 41 53 0 5 1.23 AC chr1 43859771 43859815 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 43861166 43861192 trf 2 13.0 2 100 0 52 50 50 0 0 1.00 AC chr1 43861841 43861876 trf 4 8.8 4 100 0 70 77 22 0 0 0.78 AAAC chr1 43867156 43867193 trf 4 9.2 4 100 0 74 0 0 27 72 0.84 GTTT chr1 43868107 43868143 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 43871041 43871070 trf 2 14.5 2 100 0 58 0 0 51 48 1.00 GT chr1 43871069 43871115 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 43876590 43876652 trf 2 31.5 2 85 3 81 3 1 50 45 1.27 GT chr1 43880174 43880224 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 43883837 43883965 trf 8 16.1 8 79 13 95 0 35 11 51 1.44 TGTCTCTC chr1 43883837 43883935 trf 4 25.2 4 78 12 71 1 32 15 51 1.50 TGTC chr1 43883859 43883968 trf 4 27.5 4 81 5 96 0 39 8 51 1.38 TCTC chr1 43891228 43891281 trf 2 26.5 2 100 0 106 50 0 0 49 1.00 AT chr1 43892356 43892402 trf 8 6.0 8 77 10 51 80 17 0 2 0.81 CAAAAAAA chr1 43893391 43893423 trf 8 3.9 8 92 8 55 87 0 12 0 0.54 AAAAAAAG chr1 43900467 43900494 trf 4 6.8 4 100 0 54 25 0 0 74 0.83 TATT chr1 43916378 43916498 trf 10 12.0 10 88 0 150 50 42 0 6 1.28 ACACACACAC chr1 43916378 43916498 trf 4 30.0 4 84 0 150 50 42 0 6 1.28 ACAC chr1 43917442 43917500 trf 2 29.0 2 100 0 116 50 50 0 0 1.00 CA chr1 43917499 43917525 trf 2 13.0 2 100 0 52 50 0 50 0 1.00 AG chr1 43930901 43930945 trf 5 8.2 5 85 14 61 77 22 0 0 0.77 ACAAA chr1 43937026 43937059 trf 2 16.5 2 100 0 66 0 0 51 48 1.00 GT chr1 43940571 43940597 trf 5 5.2 5 100 0 52 0 0 19 80 0.71 TGTTT chr1 43945689 43945738 trf 12 4.1 12 100 0 98 40 0 26 32 1.56 GTAGAATTAGTA chr1 43959015 43959056 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 43959099 43959141 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 43965414 43965467 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 43969826 43969862 trf 1 36.0 1 88 0 54 0 5 0 94 0.31 T chr1 43972893 43972918 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 43981515 43981564 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 43986000 43986040 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 43995749 43995802 trf 8 6.6 8 88 0 52 5 9 33 50 1.58 TGTGTGTC chr1 43995761 43995800 trf 12 3.2 12 88 0 51 7 12 28 51 1.67 TGTCTGTCTGTA chr1 43997969 43998008 trf 2 19.5 2 100 0 78 0 0 48 51 1.00 TG chr1 44007446 44007495 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 44007854 44007902 trf 2 24.0 2 95 0 87 50 47 0 2 1.12 AC chr1 44016276 44016334 trf 1 58.0 1 78 0 62 89 6 3 0 0.57 A chr1 44021217 44021254 trf 5 7.6 5 82 17 51 81 0 0 18 0.70 AAAAT chr1 44030125 44030161 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 44043047 44043108 trf 2 30.5 2 96 0 113 50 49 0 0 1.00 CA chr1 44044880 44044923 trf 2 21.5 2 100 0 86 0 0 51 48 1.00 GT chr1 44050183 44050315 trf 5 26.6 5 92 1 194 56 43 0 0 1.04 AAACC chr1 44051065 44051091 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 44075711 44075764 trf 2 26.5 2 96 0 97 0 1 49 49 1.12 TG chr1 44076403 44076437 trf 4 8.5 4 100 0 68 73 26 0 0 0.83 CAAA chr1 44080017 44080077 trf 4 15.0 4 100 0 120 0 50 0 50 1.00 CTTC chr1 44081601 44081626 trf 7 3.6 7 100 0 50 12 12 44 32 1.78 TGTGAGC chr1 44081623 44081666 trf 4 10.8 4 100 0 86 0 23 51 25 1.49 GTGC chr1 44082453 44082481 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 44083213 44083280 trf 4 16.2 4 90 6 107 71 0 28 0 0.86 AAAG chr1 44083288 44083409 trf 4 29.8 4 91 3 134 30 1 67 0 1.00 GGGA chr1 44085089 44085119 trf 4 7.5 4 92 0 51 50 0 26 23 1.50 AATG chr1 44097862 44097908 trf 5 9.0 5 90 4 74 80 0 0 19 0.71 AAAAT chr1 44102817 44102956 trf 2 70.0 2 98 1 271 0 50 0 49 1.00 TC chr1 44103367 44103407 trf 2 20.0 2 100 0 80 0 0 50 50 1.00 GT chr1 44105206 44105233 trf 12 2.2 12 100 0 54 37 14 33 14 1.88 GAAGTGTAAGCC chr1 44105846 44105880 trf 5 7.0 5 86 6 52 79 20 0 0 0.73 AAAAC chr1 44111631 44111676 trf 5 9.0 5 90 7 65 75 24 0 0 0.80 AAAAC chr1 44120857 44120894 trf 2 18.5 2 100 0 74 51 48 0 0 1.00 AC chr1 44129689 44129751 trf 2 31.0 2 93 0 106 53 46 0 0 1.00 AC chr1 44133407 44133485 trf 3 28.7 3 75 19 82 0 67 0 32 0.90 CTC chr1 44133450 44133519 trf 6 11.5 6 95 0 57 0 49 0 50 1.00 CTCCTT chr1 44133471 44133519 trf 9 5.3 9 92 0 60 0 41 0 58 0.98 CTCCTTCTT chr1 44133477 44133518 trf 3 13.7 3 94 0 73 0 36 0 63 0.95 CTT chr1 44133515 44133570 trf 2 27.5 2 96 0 101 0 47 0 52 1.00 TC chr1 44133657 44133727 trf 5 14.0 5 100 0 140 0 40 0 60 0.97 CTTCT chr1 44139825 44139872 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 44142437 44142480 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 44145054 44145082 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 44149911 44149943 trf 7 4.7 7 96 3 57 0 0 9 90 0.45 TTTTTGT chr1 44150863 44150910 trf 2 23.5 2 100 0 94 51 48 0 0 1.00 AC chr1 44154434 44155023 trf 8 73.6 8 92 0 881 4 24 32 38 1.77 TCCTGTGG chr1 44164738 44164769 trf 4 7.8 4 100 0 62 77 22 0 0 0.77 AAAC chr1 44167956 44167985 trf 1 29.0 1 100 0 58 0 0 0 100 0.00 T chr1 44168480 44168508 trf 4 7.0 4 100 0 56 0 25 25 50 1.50 GTCT chr1 44168887 44168922 trf 12 2.9 12 100 0 70 48 34 8 8 1.64 GTACACACACAA chr1 44168913 44168938 trf 2 12.5 2 100 0 50 52 48 0 0 1.00 AC chr1 44169107 44169227 trf 4 30.2 4 86 8 165 23 23 3 50 1.64 TCTA chr1 44170753 44170796 trf 4 10.8 4 100 0 86 25 0 0 74 0.82 TATT chr1 44175730 44175789 trf 4 14.8 4 87 7 84 1 25 20 52 1.56 TCTG chr1 44178555 44178586 trf 5 6.2 5 100 0 62 0 0 19 80 0.71 TTTGT chr1 44179063 44179094 trf 3 10.7 3 93 6 55 32 0 0 67 0.91 TAT chr1 44187056 44187181 trf 5 25.0 5 95 0 160 32 0 27 39 1.62 GTATA chr1 44187365 44187397 trf 2 15.5 2 93 6 55 50 0 3 46 1.17 AT chr1 44197056 44197109 trf 2 27.0 2 96 3 99 50 49 0 0 1.00 CA chr1 44197108 44197270 trf 4 40.5 4 73 2 74 48 14 35 0 1.49 AGAG chr1 44201261 44201322 trf 6 10.2 6 100 0 122 34 49 0 16 1.46 AACCCT chr1 44205555 44205631 trf 6 12.7 6 100 0 152 0 51 15 32 1.44 CCTCTG chr1 44210336 44210398 trf 9 6.6 9 89 10 97 43 0 0 56 0.99 TTAATTTAA chr1 44211201 44211298 trf 10 9.7 10 94 0 140 71 0 28 0 0.87 AAAGAAAGGA chr1 44211201 44211309 trf 5 21.6 5 86 3 119 72 0 27 0 0.85 AAAGA chr1 44215247 44215303 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 44215303 44215365 trf 4 15.2 4 96 3 115 25 24 0 50 1.50 ATCT chr1 44220354 44220401 trf 5 9.8 5 93 2 71 44 0 55 0 0.99 AGGAG chr1 44220402 44220506 trf 5 20.8 5 82 3 120 73 0 26 0 0.84 AAAAG chr1 44227153 44227181 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 44229807 44229835 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 44236259 44236323 trf 3 21.3 3 100 0 128 65 0 34 0 0.93 GAA chr1 44237096 44237147 trf 5 10.2 5 100 0 102 19 0 0 80 0.71 TTATT chr1 44239168 44239377 trf 6 34.8 6 88 5 127 48 0 51 0 1.04 GAAGAG chr1 44239171 44239302 trf 3 43.7 3 80 8 151 37 0 61 0 1.01 GAG chr1 44239300 44239380 trf 3 26.7 3 100 0 160 66 0 33 0 0.92 GAA chr1 44252944 44252993 trf 5 10.0 5 91 4 82 38 0 0 61 0.96 TATAT chr1 44252944 44253104 trf 7 22.3 7 73 16 78 41 6 1 50 1.37 TATATAT chr1 44252950 44253063 trf 12 9.8 12 72 14 80 39 4 1 53 1.31 TTATATATTATA chr1 44260282 44260364 trf 2 42.0 2 95 4 150 50 0 50 0 1.00 AG chr1 44260352 44260389 trf 7 5.3 7 90 0 56 35 0 64 0 0.94 GAGAGGG chr1 44262296 44262333 trf 6 6.2 6 93 0 56 0 54 0 45 1.00 TCTTCC chr1 44266564 44266591 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 44279266 44279301 trf 10 3.7 10 92 7 56 0 0 8 91 0.42 TTTTTTTGTT chr1 44286901 44286934 trf 3 11.0 3 100 0 66 66 33 0 0 0.92 AAC chr1 44290953 44291010 trf 8 7.2 8 90 4 80 0 36 40 22 1.55 GCGCTCTG chr1 44295536 44295609 trf 8 9.2 8 86 3 76 0 36 42 20 1.52 GCGCTCTG chr1 44314120 44314177 trf 5 11.0 5 90 5 87 77 22 0 0 0.77 AACAA chr1 44318623 44318857 trf 4 58.8 4 94 0 200 0 36 0 62 1.02 TTCT chr1 44319428 44319505 trf 1 77.0 1 72 0 55 1 1 11 85 0.72 T chr1 44319429 44319486 trf 7 7.9 7 86 7 78 1 0 12 85 0.66 TTTTTTG chr1 44323037 44323062 trf 2 12.5 2 100 0 50 0 48 0 52 1.00 TC chr1 44328567 44328610 trf 1 43.0 1 95 0 77 97 0 2 0 0.16 A chr1 44333231 44333307 trf 2 38.0 2 94 0 134 0 50 0 50 1.00 CT chr1 44335723 44335782 trf 7 8.3 7 80 10 57 0 3 11 84 0.73 TGTTTTT chr1 44339948 44340001 trf 1 53.0 1 76 0 52 0 0 11 88 0.51 T chr1 44342219 44342244 trf 2 12.5 2 100 0 50 0 0 48 52 1.00 TG chr1 44358190 44358218 trf 8 3.5 8 100 0 56 10 39 25 25 1.87 CCTGAGCT chr1 44360559 44360594 trf 8 4.4 8 96 0 61 0 40 14 45 1.45 CTCTCTTG chr1 44362965 44363000 trf 8 4.4 8 96 0 61 0 40 14 45 1.45 CTCTCTTG chr1 44364490 44364526 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 GT chr1 44364606 44364754 trf 7 21.1 7 74 8 86 35 3 8 52 1.48 TATATTA chr1 44364644 44364784 trf 7 19.9 7 68 7 59 35 3 10 50 1.53 TTATATG chr1 44368515 44368564 trf 5 9.8 5 100 0 98 0 18 20 61 1.35 TTTGC chr1 44382940 44382992 trf 2 26.0 2 92 0 86 48 1 1 48 1.24 AT chr1 44383105 44383135 trf 10 3.0 10 100 0 60 0 10 0 90 0.47 TTTTTTTTTC chr1 44391517 44391576 trf 2 29.5 2 96 0 109 50 0 49 0 1.00 GA chr1 44397389 44397511 trf 4 29.2 4 93 4 190 0 24 0 74 0.87 TCTT chr1 44403709 44403758 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 44406117 44406162 trf 4 11.2 4 95 0 81 73 0 2 24 0.95 AATA chr1 44406259 44406305 trf 1 46.0 1 100 0 92 100 0 0 0 0.00 A chr1 44408640 44408669 trf 9 3.3 9 90 9 51 79 20 0 0 0.74 AAAACAAAC chr1 44408641 44408672 trf 4 7.5 4 92 7 53 77 22 0 0 0.77 AAAC chr1 44422035 44422084 trf 2 24.5 2 100 0 98 0 0 48 51 1.00 TG chr1 44422492 44422537 trf 6 7.5 6 92 5 58 2 11 0 86 0.65 TTTCTT chr1 44439954 44440229 trf 9 30.0 9 83 6 108 53 0 45 0 1.05 AGAAGGAGG chr1 44439957 44440051 trf 6 15.8 6 82 2 82 44 0 54 1 1.07 AGGAGG chr1 44439984 44440225 trf 6 40.8 6 84 6 125 55 0 43 0 1.02 AGGAGA chr1 44440011 44440176 trf 3 56.3 3 89 4 248 64 0 35 0 0.94 AGA chr1 44440178 44440229 trf 3 17.0 3 100 0 102 33 0 66 0 0.92 AGG chr1 44440427 44440538 trf 2 61.0 2 80 18 136 55 0 44 0 0.99 GA chr1 44445059 44445089 trf 4 7.5 4 100 0 60 53 0 23 23 1.46 AAGT chr1 44450780 44450805 trf 11 2.3 11 100 0 50 12 0 52 36 1.39 AGTTGGGTGTG chr1 44450980 44451011 trf 4 7.8 4 100 0 62 25 0 51 22 1.48 AGGT chr1 44455032 44455069 trf 4 9.2 4 93 0 56 29 0 18 51 1.47 TGTA chr1 44455038 44455077 trf 12 3.2 12 88 0 51 33 0 12 53 1.39 TATGTATATATA chr1 44456754 44456790 trf 2 18.0 2 100 0 72 0 0 50 50 1.00 TG chr1 44456789 44456893 trf 10 10.4 10 92 0 136 50 6 42 0 1.28 GAGAGAGAGA chr1 44456789 44456893 trf 6 17.3 6 88 0 136 50 6 42 0 1.28 GAGAGA chr1 44460929 44461406 trf 9 54.3 9 97 2 701 0 48 0 51 1.00 CTTTCCTTC chr1 44462490 44462541 trf 2 25.5 2 95 0 93 49 49 0 1 1.12 AC chr1 44465254 44465303 trf 5 9.8 5 86 0 71 59 36 4 0 1.17 AAACC chr1 44467820 44467891 trf 2 35.5 2 94 0 124 47 0 2 49 1.16 AT chr1 44471244 44471273 trf 2 14.5 2 100 0 58 0 48 0 51 1.00 TC chr1 44471272 44471319 trf 2 23.5 2 100 0 94 0 0 48 51 1.00 TG chr1 44471638 44471706 trf 4 16.8 4 93 3 118 25 0 0 75 0.81 ATTT chr1 44474310 44474388 trf 2 39.0 2 94 0 138 0 52 0 47 1.00 CT chr1 44487735 44487779 trf 1 44.0 1 100 0 88 100 0 0 0 0.00 A chr1 44488482 44488527 trf 1 45.0 1 100 0 90 100 0 0 0 0.00 A chr1 44488524 44488556 trf 4 8.0 4 100 0 64 75 0 25 0 0.81 AAAG chr1 44488632 44488663 trf 1 31.0 1 100 0 62 100 0 0 0 0.00 A chr1 44491809 44491852 trf 11 3.7 12 81 12 54 0 0 23 76 0.78 GTTTGTTTGTTT chr1 44491809 44491852 trf 4 11.0 4 80 14 54 0 0 23 76 0.78 GTTT chr1 44492052 44492083 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 44503835 44503860 trf 12 2.1 12 100 0 50 52 8 16 24 1.70 AAACTTGGAAAT chr1 44505179 44505218 trf 3 13.0 3 100 0 78 66 33 0 0 0.92 CAA chr1 44506859 44506887 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 TG chr1 44506886 44506946 trf 2 30.0 2 82 0 75 50 6 41 1 1.39 GA chr1 44511281 44511328 trf 9 5.3 9 78 14 53 44 0 55 0 0.99 GAGGAAGAG chr1 44511300 44511562 trf 9 29.1 9 75 12 83 53 0 46 0 1.03 GAAGGAGGA chr1 44511302 44511367 trf 6 10.8 6 81 6 60 43 0 55 1 1.09 AGGAGG chr1 44511338 44511805 trf 3 156.3 3 84 5 473 59 0 40 0 1.01 AGA chr1 44511478 44511522 trf 8 6.0 8 80 20 60 61 0 38 0 0.96 AAGGAGAA chr1 44512904 44512951 trf 8 5.3 9 75 14 53 87 0 12 0 0.55 AAAAAAAAG chr1 44518757 44518801 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 44518869 44518912 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 44518911 44518940 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 44523890 44523919 trf 2 14.5 2 100 0 58 0 0 48 51 1.00 TG chr1 44529302 44529329 trf 1 27.0 1 100 0 54 0 0 0 100 0.00 T chr1 44535254 44535306 trf 2 26.0 2 100 0 104 50 0 0 50 1.00 AT chr1 44543516 44543587 trf 6 11.7 6 85 8 83 0 0 16 83 0.66 TTTTGT chr1 44546271 44546313 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 GT chr1 44548902 44548928 trf 4 6.5 4 100 0 52 0 46 0 53 1.00 TTCC chr1 44548934 44548988 trf 1 54.0 1 100 0 108 0 0 0 100 0.00 T chr1 44549217 44549277 trf 4 15.0 4 93 6 104 76 0 23 0 0.78 GAAA chr1 44551120 44551261 trf 5 28.8 5 84 12 50 69 0 30 0 0.89 AAAAG chr1 44551122 44551246 trf 5 26.8 5 89 9 121 66 0 33 0 0.92 AAGAG chr1 44551125 44551260 trf 8 15.6 8 88 8 130 68 0 31 0 0.89 AGAAAGAA chr1 44552785 44552836 trf 2 25.5 2 91 0 84 47 49 3 0 1.20 AC chr1 44554547 44554589 trf 2 21.0 2 100 0 84 50 50 0 0 1.00 CA chr1 44558336 44558397 trf 2 30.5 2 100 0 122 0 49 0 50 1.00 TC chr1 44567958 44568085 trf 10 12.7 10 82 0 119 50 11 38 0 1.38 GAGAGAGAGA chr1 44567958 44568085 trf 6 21.2 6 82 0 119 50 11 38 0 1.38 GAGAGA chr1 44567958 44568085 trf 4 31.8 4 83 0 119 50 11 38 0 1.38 GAGA chr1 44571354 44571398 trf 2 22.0 2 85 0 52 43 2 6 47 1.42 TA chr1 44571450 44571522 trf 2 35.5 2 85 2 81 6 2 41 48 1.44 GT chr1 44571915 44571968 trf 6 9.5 6 76 15 60 49 15 33 1 1.55 AGACAG chr1 44573509 44573642 trf 4 32.8 4 90 3 185 0 50 0 48 1.06 TTCC chr1 44590585 44590622 trf 2 18.5 2 94 0 65 0 0 48 51 1.00 GT chr1 44590625 44590668 trf 2 21.5 2 95 0 77 51 0 48 0 1.00 GA chr1 44591139 44591184 trf 3 15.3 3 81 4 56 64 31 2 2 1.18 AAC chr1 44611634 44611692 trf 3 19.3 3 92 0 98 29 32 3 34 1.74 TAC chr1 44611690 44611719 trf 3 9.7 3 100 0 58 0 34 31 34 1.58 CTG chr1 44617757 44617783 trf 12 2.2 12 100 0 52 23 30 0 46 1.53 TTCCTTCCAAAT chr1 44619100 44619161 trf 3 20.3 3 79 0 68 1 57 1 39 1.18 TCC chr1 44623220 44623265 trf 4 11.5 4 90 4 74 73 0 0 26 0.84 TAAA chr1 44627909 44627940 trf 4 7.8 4 100 0 62 25 0 0 74 0.82 TTAT chr1 44628008 44628038 trf 3 10.0 3 92 0 51 0 63 0 36 0.95 CTC chr1 44628052 44628119 trf 6 11.2 6 83 0 62 1 37 8 52 1.42 TCTCTC chr1 44628058 44628119 trf 8 7.6 8 77 14 63 1 37 8 52 1.41 TCTCTGTC chr1 44628367 44628419 trf 2 26.0 2 100 0 104 0 0 50 50 1.00 TG chr1 44628514 44628568 trf 3 18.3 3 88 3 83 0 33 31 35 1.58 CTG chr1 44639351 44639391 trf 5 8.0 5 100 0 80 0 0 20 80 0.72 TGTTT chr1 44640671 44640724 trf 2 26.5 2 96 0 97 50 47 0 1 1.12 AC chr1 44653657 44653694 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 44665067 44665108 trf 4 10.2 4 100 0 82 26 0 0 73 0.84 ATTT chr1 44666741 44666791 trf 2 25.0 2 95 0 91 52 48 0 0 1.00 AC chr1 44683674 44683700 trf 11 2.4 11 100 0 52 15 0 19 65 1.27 TGTTTGTATTA chr1 44684629 44684675 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 44685502 44685536 trf 2 17.0 2 87 0 50 47 47 0 5 1.26 AC chr1 44686594 44686691 trf 4 24.0 4 93 2 149 45 0 54 0 0.99 GAAG chr1 44691290 44691339 trf 7 7.4 7 80 15 52 0 2 12 85 0.68 TTTTTGT chr1 44691915 44691991 trf 4 18.5 4 94 5 134 25 23 0 51 1.49 ATCT chr1 44700835 44700926 trf 2 45.5 2 91 0 146 2 49 2 46 1.26 TC chr1 44700955 44700982 trf 2 13.5 2 100 0 54 0 0 48 51 1.00 TG chr1 44707374 44707437 trf 5 12.6 5 78 5 65 74 6 19 0 1.02 AAAGA chr1 44710099 44710140 trf 2 20.5 2 94 0 73 48 0 2 48 1.14 AT chr1 44710199 44710251 trf 2 27.0 2 92 7 90 50 0 50 0 1.00 AG chr1 44713590 44713618 trf 2 14.0 2 100 0 56 50 50 0 0 1.00 CA chr1 44714136 44714178 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 44714405 44714450 trf 2 22.5 2 100 0 90 0 0 48 51 1.00 TG chr1 44715406 44715491 trf 5 17.0 5 100 0 170 40 0 60 0 0.97 AGGAG chr1 44720534 44720630 trf 5 19.2 5 100 0 192 0 40 0 59 0.97 CTCTT chr1 44734915 44735038 trf 3 41.0 3 91 6 205 65 1 31 0 1.08 AGA chr1 44735899 44735931 trf 2 16.0 2 100 0 64 0 0 50 50 1.00 GT chr1 44742308 44742393 trf 8 10.9 8 81 8 86 2 43 5 48 1.40 CTCTCTCT chr1 44742308 44742393 trf 6 14.5 6 80 9 86 2 43 5 48 1.40 CTCTCT chr1 44742392 44742429 trf 2 18.5 2 100 0 74 48 51 0 0 1.00 CA chr1 44743003 44743071 trf 10 6.8 10 93 0 118 22 1 17 58 1.46 TATGTATTTG chr1 44743192 44743245 trf 6 8.7 6 76 19 56 16 0 32 50 1.46 ATGTGT chr1 44746929 44747006 trf 3 25.7 3 100 0 154 67 0 32 0 0.91 AAG chr1 44748642 44748672 trf 5 6.0 5 92 0 51 76 23 0 0 0.78 CAAAA chr1 44749195 44749271 trf 6 12.7 6 98 0 143 34 30 17 18 1.94 ATAGCC chr1 44749852 44749885 trf 11 3.0 11 83 16 50 81 18 0 0 0.68 AAAAACAAAAC chr1 44749852 44749884 trf 6 5.7 6 92 7 50 84 15 0 0 0.63 AAAAAC chr1 44749919 44749980 trf 10 5.9 10 79 7 68 45 18 34 1 1.59 AGAGACAGAC chr1 44750277 44750313 trf 12 3.0 12 91 0 54 16 72 2 8 1.21 TCCCCCACCCAC chr1 44754032 44754109 trf 4 18.8 4 80 10 75 64 0 35 0 0.93 AAGA chr1 44754704 44754746 trf 4 10.5 4 100 0 84 26 0 0 73 0.83 ATTT chr1 44759857 44759884 trf 4 6.8 4 100 0 54 0 0 22 77 0.76 TTTG chr1 44761261 44761301 trf 3 13.3 3 100 0 80 67 32 0 0 0.91 ACA chr1 44762185 44762223 trf 7 5.4 7 87 12 60 55 2 42 0 1.14 GAGAGAA chr1 44762868 44762922 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 44763080 44763117 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 44764578 44764616 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 44765063 44765141 trf 2 39.0 2 92 0 120 0 5 44 50 1.24 GT chr1 44765175 44765201 trf 4 6.5 4 100 0 52 23 0 0 76 0.78 TTAT chr1 44769386 44769429 trf 4 10.8 4 100 0 86 74 0 0 25 0.82 AATA chr1 44777439 44777494 trf 2 27.5 2 100 0 110 49 0 0 50 1.00 TA chr1 44779263 44779289 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTTG chr1 44783919 44783972 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 44786846 44786900 trf 2 27.0 2 100 0 108 50 50 0 0 1.00 CA chr1 44786899 44786938 trf 2 19.5 2 100 0 78 51 0 48 0 1.00 AG chr1 44788704 44788751 trf 2 23.5 2 100 0 94 0 48 0 51 1.00 TC chr1 44790932 44790989 trf 4 14.0 4 82 17 73 28 22 0 49 1.50 CTTA chr1 44793989 44794036 trf 2 23.5 2 95 0 85 48 2 0 48 1.13 TA chr1 44794058 44794099 trf 4 10.8 4 80 19 52 48 0 21 29 1.50 ATAG chr1 44794588 44794620 trf 2 16.0 2 93 0 55 53 46 0 0 1.00 CA chr1 44797387 44797431 trf 10 4.2 10 85 5 52 11 0 38 50 1.39 GTATGTGTGT chr1 44798672 44798840 trf 6 27.8 6 86 8 126 26 2 24 46 1.67 TGTATG chr1 44798731 44798842 trf 6 18.3 6 96 1 159 28 0 21 49 1.50 ATGTAT chr1 44800107 44800165 trf 4 14.5 4 100 0 116 25 24 0 50 1.50 ATCT chr1 44805215 44805268 trf 4 13.2 4 95 0 97 73 0 1 24 0.93 AAAT chr1 44811080 44811202 trf 5 24.0 5 93 3 154 0 27 0 72 0.85 CTTTT chr1 44820036 44820075 trf 6 6.3 6 91 8 53 0 0 12 87 0.55 TTGTTT chr1 44820039 44820077 trf 7 5.7 7 93 6 62 0 0 10 89 0.49 TTTTTGT chr1 44827539 44827632 trf 2 46.5 2 89 4 143 1 49 2 47 1.20 TC chr1 44828595 44828720 trf 2 62.5 2 80 3 135 50 4 42 2 1.36 AG chr1 44828830 44828893 trf 2 31.5 2 96 0 117 50 0 49 0 1.00 GA chr1 44828837 44828900 trf 12 5.2 12 94 0 54 52 1 44 1 1.20 AGAGAGAGACAA chr1 44829137 44829199 trf 4 15.8 4 77 9 56 77 22 0 0 0.77 AAAC chr1 44829159 44829204 trf 12 3.8 12 84 0 63 84 15 0 0 0.62 CAAAAAAAAAAA chr1 44829208 44829275 trf 12 5.6 12 77 20 61 82 1 13 2 0.86 AAAGAAAAAAGA chr1 44829226 44829275 trf 5 9.6 5 91 4 71 81 0 14 4 0.83 AAAAG chr1 44836436 44836490 trf 4 13.5 4 88 0 81 24 1 24 50 1.60 GTAT chr1 44839713 44839775 trf 2 31.0 2 100 0 124 50 0 0 50 1.00 TA chr1 44840078 44840148 trf 2 35.5 2 94 2 124 0 47 1 51 1.09 TC chr1 44841857 44841894 trf 10 3.7 10 96 0 65 56 40 0 2 1.13 ACACACAAAC chr1 44841857 44841896 trf 2 19.5 2 83 0 51 56 41 0 2 1.13 AC chr1 44841865 44841900 trf 12 3.1 12 92 8 56 60 40 0 0 0.97 ACACACACAAAC chr1 44843131 44843224 trf 2 46.5 2 95 0 168 48 0 49 2 1.13 AG chr1 44845743 44845810 trf 5 13.4 5 83 0 89 5 17 1 74 1.09 TTCTT chr1 44854247 44854342 trf 4 23.8 4 94 0 100 49 40 9 1 1.42 ACAC chr1 44858673 44858716 trf 8 5.5 8 88 5 70 25 34 25 13 1.93 CAGGCTCA chr1 44861486 44861538 trf 12 4.2 12 81 16 61 80 19 0 0 0.71 AAAAAACAAAAC chr1 44861488 44861528 trf 5 8.8 5 79 20 52 82 17 0 0 0.67 AAAAC chr1 44866686 44866740 trf 5 10.8 5 100 0 108 59 0 20 20 1.38 ATAGA chr1 44866963 44866988 trf 3 8.3 3 100 0 50 32 0 0 68 0.90 TAT chr1 44869452 44869494 trf 5 8.6 5 94 5 77 19 0 0 80 0.70 TTTAT chr1 44870649 44870724 trf 4 18.8 4 88 0 105 0 68 2 29 1.04 CCTC chr1 44872876 44872913 trf 10 3.4 11 88 11 58 83 16 0 0 0.64 AAAACAAAAAC chr1 44872883 44872913 trf 5 5.8 5 92 7 51 83 16 0 0 0.65 AAAAC chr1 44874787 44874877 trf 5 18.0 5 100 0 180 0 60 0 40 0.97 CTCTC chr1 44876804 44876872 trf 12 6.1 11 77 11 52 45 5 1 47 1.36 ATTTTAATTAA chr1 44884012 44884064 trf 4 13.2 4 95 4 97 51 23 0 25 1.48 ATAC chr1 44885198 44885230 trf 1 32.0 1 93 0 55 96 0 3 0 0.20 A chr1 44912900 44912930 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 44917131 44917163 trf 12 2.7 12 90 0 55 75 0 6 18 1.01 AATAAAAAAGTA chr1 44920266 44920316 trf 7 6.7 7 84 13 64 82 0 18 0 0.68 GAAAAAA chr1 44921538 44921580 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 44922312 44922358 trf 6 7.7 6 100 0 92 84 0 0 15 0.62 AAAATA chr1 44922705 44922758 trf 2 26.5 2 100 0 106 0 0 49 50 1.00 TG chr1 44923232 44923275 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 44928775 44928813 trf 2 19.0 2 88 0 58 2 2 47 47 1.30 GT chr1 44939405 44939448 trf 5 9.0 5 90 10 63 0 0 37 62 0.95 GTTTG chr1 44944487 44944525 trf 4 9.5 4 100 0 76 76 0 0 23 0.79 AAAT chr1 44951144 44951221 trf 5 15.4 5 97 0 145 19 38 0 41 1.52 TCTAC chr1 44951222 44951317 trf 5 19.0 5 95 0 136 21 33 0 45 1.52 ATTCC chr1 44951316 44951360 trf 2 22.0 2 100 0 88 0 50 0 50 1.00 CT chr1 44951997 44952031 trf 4 8.5 4 100 0 68 23 0 0 76 0.79 TTTA chr1 44952536 44952637 trf 6 17.2 6 79 12 79 0 0 22 76 0.85 TGTTTT chr1 44959140 44959177 trf 1 37.0 1 100 0 74 0 0 0 100 0.00 T chr1 44966522 44966573 trf 1 51.0 1 92 0 84 96 1 0 1 0.28 A chr1 44970170 44970201 trf 2 15.5 2 100 0 62 48 0 0 51 1.00 TA chr1 44971290 44971357 trf 3 22.0 3 93 3 116 65 0 1 32 1.02 TAA chr1 44982849 44982895 trf 4 11.5 4 85 0 65 71 4 0 23 1.03 AAAT chr1 44984764 44984856 trf 6 15.3 6 96 0 121 0 69 0 30 0.89 CTCCTC chr1 44984854 44984922 trf 3 23.0 3 96 3 129 0 33 0 66 0.92 CTT chr1 44985974 44986055 trf 4 20.2 4 94 5 146 75 0 24 0 0.81 AAAG chr1 44986052 44986191 trf 10 13.9 10 78 11 83 51 7 40 0 1.36 AGACAGAGAG chr1 44986056 44986191 trf 8 16.9 8 80 6 112 51 7 40 0 1.35 ACAGAGAG chr1 44988005 44988082 trf 4 19.5 4 91 2 129 24 27 0 48 1.52 TATC chr1 44988119 44988170 trf 2 25.5 2 100 0 102 0 0 49 50 1.00 TG chr1 45008477 45008516 trf 2 19.5 2 100 0 78 48 0 0 51 1.00 TA chr1 45009208 45009336 trf 10 12.8 10 81 0 148 49 41 7 2 1.43 CACACACACA chr1 45009208 45009336 trf 6 21.3 6 90 0 148 49 41 7 2 1.43 CACACA chr1 45015261 45015328 trf 5 13.8 5 78 12 61 77 22 0 0 0.77 AAAAC chr1 45015558 45015608 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 45015641 45015703 trf 6 10.3 6 77 6 54 3 43 6 46 1.45 TCTCTC chr1 45021857 45021912 trf 2 27.5 2 100 0 110 50 0 49 0 1.00 AG chr1 45025407 45025441 trf 4 8.5 4 100 0 68 50 0 23 26 1.50 ATGA chr1 45027595 45027620 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 45027857 45027898 trf 3 13.7 3 94 0 73 68 29 2 0 1.03 AAC chr1 45028834 45028867 trf 10 3.4 10 91 4 50 87 0 0 12 0.53 AAAATAAAAT chr1 45029051 45029083 trf 2 16.0 2 100 0 64 50 50 0 0 1.00 CA chr1 45034998 45035048 trf 10 4.8 10 85 7 55 86 14 0 0 0.58 AAAAAAAAAC chr1 45035000 45035051 trf 5 10.4 5 85 12 70 84 15 0 0 0.63 AAAAC chr1 45036391 45036463 trf 2 36.0 2 100 0 144 0 50 0 50 1.00 TC chr1 45044478 45044511 trf 4 8.2 4 100 0 66 0 0 24 75 0.80 TGTT chr1 45047140 45047199 trf 6 10.8 6 77 15 58 81 16 0 1 0.78 AAAACA chr1 45047140 45047210 trf 11 6.3 11 74 12 54 81 15 1 1 0.84 AAAACAAAAAA chr1 45053148 45053224 trf 1 76.0 1 78 0 80 89 10 0 0 0.49 A chr1 45053280 45053330 trf 4 12.5 4 95 0 91 24 2 74 0 0.93 GGGA chr1 45053327 45053395 trf 4 17.0 4 100 0 136 50 0 50 0 1.00 AGGA chr1 45055931 45055958 trf 2 13.5 2 100 0 54 0 0 51 48 1.00 GT chr1 45055957 45056038 trf 2 40.5 2 97 0 153 49 1 49 0 1.08 GA chr1 45070100 45070182 trf 2 41.0 2 95 0 146 0 47 0 52 1.00 TC chr1 45070180 45070241 trf 4 15.2 4 100 0 122 0 49 0 50 1.00 TCCT chr1 45070238 45070299 trf 4 15.2 4 100 0 122 0 26 0 73 0.83 CTTT chr1 45070766 45070834 trf 7 9.7 7 90 0 109 0 41 30 27 1.56 CTCCTGG chr1 45073355 45073403 trf 2 24.0 2 100 0 96 0 0 50 50 1.00 GT chr1 45081114 45081164 trf 1 50.0 1 100 0 100 0 0 0 100 0.00 T chr1 45087509 45087633 trf 4 29.5 4 95 4 146 79 0 20 0 0.74 AAGA chr1 45089396 45089445 trf 10 5.1 10 82 7 66 87 0 12 0 0.54 AAAAAAGAAA chr1 45103113 45103138 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 45105682 45105721 trf 4 9.8 4 100 0 78 23 0 0 76 0.78 TTTA chr1 45111811 45111851 trf 5 7.8 5 91 2 62 0 22 0 77 0.77 TTTTC chr1 45112415 45112461 trf 9 4.9 10 81 7 53 78 21 0 0 0.76 AAAACAAAAC chr1 45112415 45112461 trf 5 9.8 5 81 13 53 78 21 0 0 0.76 AAAAC chr1 45114066 45114092 trf 7 3.7 7 100 0 52 26 0 11 61 1.30 ATTTTGA chr1 45131937 45132009 trf 2 36.5 2 91 2 119 0 51 0 48 1.00 CT chr1 45135030 45135299 trf 6 44.7 6 96 0 493 34 0 64 0 0.97 AGAGGG chr1 45140307 45140382 trf 3 25.0 3 100 0 150 66 0 33 0 0.92 AAG chr1 45143690 45143720 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 45143723 45143783 trf 2 30.0 2 100 0 120 50 0 50 0 1.00 AG chr1 45145478 45145522 trf 4 10.8 4 86 13 63 0 0 22 77 0.77 TTTG chr1 45147832 45148000 trf 6 28.7 6 80 9 141 0 39 9 50 1.40 TCTCTG chr1 45151472 45151682 trf 3 64.3 3 76 16 161 0 57 0 41 1.05 TCC chr1 45151475 45151683 trf 7 30.1 7 79 15 222 0 57 0 41 1.05 TCCTCCT chr1 45152295 45152325 trf 2 15.0 2 100 0 60 0 0 50 50 1.00 GT chr1 45152327 45152389 trf 2 31.0 2 96 0 115 48 0 51 0 1.00 GA chr1 45158497 45158560 trf 2 31.5 2 90 0 90 53 42 0 3 1.16 AC chr1 45174956 45174992 trf 1 36.0 1 100 0 72 100 0 0 0 0.00 A chr1 45177780 45177873 trf 3 31.0 3 100 0 186 66 0 33 0 0.92 AAG chr1 45182057 45182093 trf 4 9.0 4 93 0 63 2 0 22 75 0.94 GTTT chr1 45192940 45193006 trf 5 13.6 5 96 3 118 80 0 19 0 0.72 AAAGA chr1 45193034 45193256 trf 5 44.0 5 97 1 390 40 0 59 0 0.98 GGAGA chr1 45196570 45196640 trf 2 35.0 2 97 0 131 51 48 0 0 1.00 CA chr1 45196823 45196876 trf 4 13.2 4 100 0 106 75 0 0 24 0.80 ATAA chr1 45197093 45197268 trf 8 21.9 8 71 16 59 0 32 0 67 0.95 TTTCTTCT chr1 45197094 45197230 trf 10 15.1 10 85 13 142 0 33 0 66 0.92 TTCTCTTCTC chr1 45197097 45197263 trf 10 19.1 8 85 12 133 0 31 0 67 0.95 TCTTTCTT chr1 45208536 45208633 trf 6 16.5 6 84 4 126 2 59 0 38 1.09 CCTCTC chr1 45215427 45215473 trf 3 15.3 3 95 0 65 0 6 32 60 1.22 TGT chr1 45216874 45216936 trf 2 31.0 2 96 0 115 48 50 0 1 1.10 AC chr1 45219893 45219966 trf 8 8.8 8 74 14 58 0 0 21 78 0.76 TTTTTTTG chr1 45224437 45224483 trf 2 22.0 2 83 16 58 45 4 2 47 1.34 AT chr1 45224840 45224884 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 TG chr1 45229942 45230011 trf 7 9.6 7 86 12 79 1 0 18 79 0.80 TTTTTGT chr1 45229944 45229996 trf 4 13.8 4 88 11 83 0 0 21 78 0.74 TTTG chr1 45238384 45238413 trf 1 29.0 1 100 0 58 100 0 0 0 0.00 A chr1 45239011 45239152 trf 6 22.8 6 72 18 94 0 24 9 65 1.22 TCTTGT chr1 45239093 45239182 trf 6 14.5 6 74 13 56 1 28 11 59 1.39 TCTTGC chr1 45239147 45239197 trf 8 6.0 8 81 9 55 2 36 14 48 1.55 TCTTGCTC chr1 45241831 45241887 trf 6 8.8 6 94 5 85 32 0 67 0 0.91 GAGAGG chr1 45242761 45242790 trf 10 3.0 10 95 5 51 0 6 0 93 0.36 TTTTCTTTTT chr1 45257068 45257144 trf 6 12.7 6 97 0 116 1 68 3 26 1.15 CCCCTT chr1 45264629 45264657 trf 10 2.8 10 100 0 56 21 17 21 39 1.93 TGGCATTATC chr1 45267333 45267379 trf 2 23.0 2 100 0 92 50 0 0 50 1.00 AT chr1 45272300 45272340 trf 4 10.0 4 100 0 80 25 0 25 50 1.50 TATG chr1 45273246 45273296 trf 1 50.0 1 83 0 64 0 0 8 92 0.40 T chr1 45273248 45273302 trf 8 6.2 9 81 14 69 0 0 11 88 0.50 TTTTTTTTG chr1 45273635 45273672 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 45280580 45280607 trf 3 9.0 3 100 0 54 0 0 33 66 0.92 GTT chr1 45283779 45283812 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 45286301 45286336 trf 2 17.5 2 93 0 61 48 48 0 2 1.16 AC chr1 45294407 45294547 trf 2 75.5 2 67 28 53 45 5 2 46 1.39 TA chr1 45294485 45294515 trf 12 2.5 12 100 0 60 43 6 0 50 1.28 TATATATAATCT chr1 45295445 45295510 trf 2 32.5 2 100 0 130 50 0 49 0 1.00 AG chr1 45297145 45297215 trf 3 23.0 3 91 8 99 0 0 30 70 0.88 TTG chr1 45302215 45302266 trf 12 4.1 12 76 16 50 47 7 1 43 1.43 TATATATATATC chr1 45303349 45303404 trf 4 14.0 4 92 3 94 49 1 25 23 1.60 GATA chr1 45313421 45313463 trf 12 3.5 12 86 0 66 59 14 26 0 1.35 AGAAAGACAGAC chr1 45313425 45313460 trf 4 8.8 4 93 0 52 57 17 25 0 1.40 AGAC chr1 45313460 45313543 trf 4 20.8 4 94 0 139 54 0 45 0 0.99 AAGG chr1 45314208 45314268 trf 2 30.0 2 100 0 120 0 0 50 50 1.00 TG chr1 45320105 45320163 trf 5 11.6 5 100 0 116 0 0 39 60 0.97 TTGGT chr1 45329482 45329562 trf 6 11.7 7 87 12 98 0 1 16 82 0.73 TTTTTTG chr1 45329491 45329542 trf 4 13.8 4 77 22 58 0 1 17 80 0.81 TTTG chr1 45329619 45329699 trf 6 11.7 7 87 12 98 0 1 16 82 0.73 TTTTTTG chr1 45329628 45329679 trf 4 13.8 4 77 22 58 0 1 17 80 0.81 TTTG chr1 45329782 45329957 trf 6 29.2 6 100 0 350 0 50 16 33 1.46 CTGCCT chr1 45339628 45339677 trf 3 16.3 3 100 0 98 0 65 0 34 0.93 TCC chr1 45345222 45345264 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 45365422 45365465 trf 8 5.4 8 80 0 50 13 20 27 37 1.91 CTGTGATC chr1 45374160 45374217 trf 2 28.5 2 100 0 114 50 0 0 49 1.00 AT chr1 45377887 45377930 trf 1 43.0 1 100 0 86 0 0 0 100 0.00 T chr1 45378680 45378733 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 45379729 45379763 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 45389305 45389334 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 45392679 45392748 trf 4 17.8 4 82 11 90 47 0 26 26 1.52 GATA chr1 45398323 45398371 trf 6 8.3 6 93 6 55 0 0 22 77 0.78 TTGTTG chr1 45401360 45401397 trf 4 9.2 4 93 0 65 48 2 0 48 1.15 TTAA chr1 45401615 45401719 trf 5 20.6 5 98 2 199 0 0 39 60 0.97 TTTGG chr1 45402942 45402976 trf 5 6.8 5 100 0 68 82 0 0 17 0.67 AAAAT chr1 45407387 45407422 trf 2 17.5 2 100 0 70 51 48 0 0 1.00 AC chr1 45407421 45407469 trf 2 24.0 2 86 0 60 47 6 2 43 1.40 AT chr1 45407422 45407485 trf 12 5.2 12 80 0 63 41 4 7 46 1.54 TATATATATATG chr1 45407466 45407492 trf 4 6.5 4 100 0 52 26 0 23 50 1.50 TATG chr1 45408125 45408228 trf 2 53.0 2 84 5 140 48 2 1 46 1.28 AT chr1 45409877 45409908 trf 9 3.3 9 95 4 53 54 0 45 0 0.99 GAAGAAGAG chr1 45423380 45423477 trf 2 48.5 2 97 0 185 49 0 50 0 1.00 AG chr1 45426548 45426613 trf 8 7.9 8 75 10 51 12 4 32 50 1.60 TGTGTGTA chr1 45426773 45426814 trf 2 20.5 2 87 0 55 2 2 43 51 1.28 GT chr1 45429098 45429130 trf 8 4.0 8 91 0 55 84 15 0 0 0.63 AAAAAAAC chr1 45433507 45433761 trf 6 41.7 6 89 6 215 53 0 46 0 1.00 AAGAGG chr1 45433509 45433588 trf 3 26.7 3 92 2 133 36 0 63 0 0.95 GAG chr1 45433574 45433770 trf 6 33.2 6 90 6 222 59 0 40 0 0.97 GAAGAA chr1 45433586 45433770 trf 9 21.5 8 78 13 117 60 0 39 0 0.97 GAAGAGAA chr1 45434027 45434126 trf 4 25.0 4 89 6 148 49 3 25 22 1.64 TAGA chr1 45434127 45434155 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 45435279 45435329 trf 12 4.2 12 80 17 59 80 20 0 0 0.72 AAAAACAAAACA chr1 45435281 45435319 trf 4 9.5 4 85 8 51 81 18 0 0 0.69 AAAC chr1 45436480 45436546 trf 3 21.7 3 96 3 123 66 0 0 33 0.92 AAT chr1 45437406 45437436 trf 12 2.5 12 88 0 51 56 3 0 40 1.16 ATATAAATATAT chr1 45440991 45441044 trf 4 12.8 4 88 7 79 69 0 28 1 0.99 AGAA chr1 45441067 45441191 trf 5 24.8 5 95 0 131 68 0 30 0 0.95 AAAGG chr1 45441092 45441195 trf 5 20.6 5 98 0 134 72 0 27 0 0.84 AAAGA chr1 45449409 45449462 trf 2 26.5 2 100 0 106 50 49 0 0 1.00 AC chr1 45450659 45450721 trf 2 31.0 2 86 0 88 48 4 1 45 1.33 TA chr1 45450724 45450763 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 45450762 45450806 trf 2 22.0 2 100 0 88 50 0 0 50 1.00 AT chr1 45467561 45467613 trf 12 4.3 12 87 0 77 51 38 0 9 1.35 CATACACACACA chr1 45467566 45467611 trf 2 22.5 2 86 0 63 51 42 0 6 1.28 AC chr1 45467610 45467661 trf 2 25.5 2 95 0 93 50 1 0 47 1.12 AT chr1 45472214 45472280 trf 4 16.5 4 90 0 69 9 0 25 65 1.22 TTGT chr1 45475576 45475617 trf 4 10.5 4 94 5 75 73 0 0 26 0.84 TAAA chr1 45477588 45477649 trf 2 30.5 2 96 0 113 1 0 49 49 1.10 GT chr1 45480862 45480887 trf 4 6.2 4 100 0 50 0 0 24 76 0.80 TTGT chr1 45483456 45483507 trf 2 26.0 2 92 4 86 47 50 0 1 1.12 CA chr1 45485008 45485053 trf 3 15.0 3 100 0 90 66 0 33 0 0.92 AGA chr1 45485051 45485145 trf 3 32.3 3 90 4 140 29 0 70 0 0.88 GAG chr1 45485125 45485190 trf 12 5.4 12 92 5 96 24 0 75 0 0.81 GGGGAGGGGGAA chr1 45485132 45485205 trf 6 12.3 6 88 2 94 28 1 69 0 0.96 GGGGAA chr1 45489911 45489955 trf 4 10.8 4 92 2 70 0 2 20 77 0.88 TTTG chr1 45491468 45491498 trf 10 3.1 10 90 9 53 0 0 20 80 0.72 TTTGTTTGTT chr1 45498803 45498829 trf 2 13.0 2 100 0 52 50 0 50 0 1.00 AG chr1 45500273 45500314 trf 10 4.0 10 90 3 64 87 0 12 0 0.53 AAAAAAGAAA chr1 45506995 45507030 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 45509149 45509192 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 45509648 45509722 trf 2 36.0 2 78 5 67 8 4 43 44 1.52 TG chr1 45509721 45509946 trf 6 37.8 6 92 1 310 35 4 60 0 1.17 GAGAGG chr1 45519563 45519608 trf 4 11.2 4 80 0 54 20 4 4 71 1.21 TATT chr1 45521251 45521284 trf 12 2.6 13 85 4 50 27 0 24 48 1.51 TGTGTATATGATG chr1 45521315 45521355 trf 2 20.0 2 100 0 80 50 50 0 0 1.00 AC chr1 45525270 45525341 trf 4 17.8 4 97 0 133 50 0 25 23 1.49 GATA chr1 45526955 45527025 trf 4 18.8 4 85 11 69 74 0 25 0 0.82 AAGA chr1 45526984 45527017 trf 7 4.7 7 88 11 50 84 0 15 0 0.61 AGAAAAA chr1 45528048 45528076 trf 4 7.0 4 100 0 56 50 0 0 50 1.00 TTAA chr1 45528684 45528709 trf 9 2.8 9 100 0 50 44 20 24 12 1.85 CTAGAAGAC chr1 45534458 45534497 trf 3 13.0 3 94 0 69 64 0 2 33 1.08 ATA chr1 45537549 45537597 trf 5 9.6 5 81 0 60 0 70 0 29 0.87 CTCCC chr1 45537621 45537743 trf 2 61.0 2 88 3 165 0 44 6 49 1.28 TC chr1 45540489 45540524 trf 2 17.5 2 100 0 70 0 0 48 51 1.00 TG chr1 45540635 45540680 trf 2 22.5 2 90 0 72 53 2 0 44 1.13 AT chr1 45542567 45542609 trf 2 21.0 2 100 0 84 0 0 50 50 1.00 TG chr1 45543661 45543701 trf 2 20.0 2 94 0 71 47 0 2 50 1.14 AT chr1 45544902 45544946 trf 5 8.8 5 100 0 88 81 18 0 0 0.68 AAAAC chr1 45546891 45546957 trf 4 16.2 4 96 3 123 74 0 25 0 0.82 GAAA chr1 45546954 45547029 trf 4 18.8 4 97 0 141 52 0 48 0 1.00 AAGG chr1 45550318 45550379 trf 4 15.2 4 85 0 68 42 3 6 47 1.45 TATA chr1 45550340 45550379 trf 10 3.9 10 93 0 60 41 0 7 51 1.31 TATATATATG chr1 45555288 45555336 trf 3 16.3 3 95 4 89 68 31 0 0 0.90 AAC chr1 45567147 45567183 trf 2 18.0 2 100 0 72 50 0 50 0 1.00 GA chr1 45568454 45568485 trf 5 6.2 5 92 0 53 77 19 3 0 0.90 AAAAC chr1 45574278 45574309 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 45582198 45582237 trf 9 4.1 10 83 9 55 7 51 0 41 1.31 CCTCCATCTT chr1 45591161 45591233 trf 2 36.0 2 97 0 135 48 0 50 1 1.09 GA chr1 45591871 45591900 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 45595239 45595265 trf 1 26.0 1 100 0 52 100 0 0 0 0.00 A chr1 45597294 45597319 trf 4 6.2 4 100 0 50 24 24 28 24 2.00 GTCA chr1 45601390 45601440 trf 4 12.5 4 100 0 100 50 0 24 26 1.50 TAGA chr1 45601498 45601528 trf 10 2.8 11 90 10 53 40 0 26 33 1.57 ATGATAGATTG chr1 45603797 45603825 trf 2 14.0 2 100 0 56 50 0 0 50 1.00 TA chr1 45603824 45603853 trf 2 14.5 2 100 0 58 51 0 48 0 1.00 AG chr1 45613063 45613176 trf 8 14.4 8 70 26 73 52 12 34 0 1.45 GAGCAAGA chr1 45622243 45622275 trf 2 16.0 2 100 0 64 50 0 50 0 1.00 AG chr1 45623509 45623534 trf 8 3.1 8 100 0 50 0 12 24 64 1.27 TCTGGTTT chr1 45624288 45624345 trf 6 9.8 6 81 14 75 82 15 0 1 0.75 AAAAAC chr1 45643212 45643256 trf 2 22.0 2 100 0 88 0 0 50 50 1.00 GT chr1 45650570 45650627 trf 2 28.5 2 96 0 105 49 49 1 0 1.11 AC chr1 45650659 45650717 trf 2 29.0 2 100 0 116 50 0 0 50 1.00 AT chr1 45666487 45666546 trf 3 19.7 3 100 0 118 67 0 0 32 0.91 AAT chr1 45677840 45677877 trf 2 19.0 2 94 5 67 0 0 48 51 1.00 TG chr1 45679002 45679029 trf 4 6.8 4 100 0 54 0 0 48 51 1.00 TTGG chr1 45679633 45679663 trf 11 2.9 10 95 5 51 86 0 13 0 0.57 AAAAGAAAAA chr1 45683149 45683174 trf 12 2.1 12 100 0 50 44 0 8 48 1.32 ATTATAATGTTA chr1 45683372 45683434 trf 1 62.0 1 78 0 52 87 1 9 1 0.69 A chr1 45684240 45684282 trf 2 21.0 2 100 0 84 50 0 0 50 1.00 AT chr1 45697865 45698000 trf 2 70.5 2 88 8 210 0 47 0 51 1.05 TC chr1 45702357 45702409 trf 6 8.8 6 87 8 63 80 15 0 3 0.85 AAAAAC chr1 45702358 45702431 trf 6 13.6 5 83 13 51 80 12 2 4 0.95 AAAAC chr1 45702457 45702502 trf 12 3.4 12 78 21 54 55 15 20 8 1.66 ATAGACAAACAG chr1 45706565 45706624 trf 5 11.8 5 100 0 118 79 0 0 20 0.73 ATAAA chr1 45712344 45712395 trf 2 25.5 2 95 0 93 0 0 49 50 1.00 GT chr1 45718164 45718223 trf 2 29.5 2 92 0 100 50 45 0 3 1.18 AC chr1 45719002 45719029 trf 4 6.8 4 100 0 54 25 0 48 25 1.52 GATG chr1 45720573 45720685 trf 2 57.5 2 81 5 131 47 0 51 0 1.06 AG chr1 45727470 45727513 trf 2 21.5 2 100 0 86 48 51 0 0 1.00 CA chr1 45735292 45735343 trf 12 4.0 12 85 14 75 25 17 49 7 1.74 TGCGCAGAGAGG chr1 45741197 45741270 trf 2 36.5 2 94 0 128 1 0 47 50 1.09 GT chr1 45744777 45744823 trf 2 23.5 2 95 4 85 50 50 0 0 1.00 AC chr1 45746506 45746531 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 45752185 45752226 trf 4 10.2 4 100 0 82 73 0 0 26 0.84 TAAA chr1 45757694 45757728 trf 2 17.0 2 100 0 68 50 0 50 0 1.00 AG chr1 45759820 45759854 trf 2 17.0 2 100 0 68 0 0 50 50 1.00 GT chr1 45759934 45759962 trf 2 14.0 2 100 0 56 0 0 50 50 1.00 GT chr1 45761809 45761869 trf 12 5.0 12 75 0 57 48 35 1 15 1.55 ACACACACACAT chr1 45762970 45763016 trf 4 11.5 4 90 0 56 82 17 0 0 0.67 CAAA chr1 45764528 45764558 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 45764557 45764608 trf 2 26.5 2 92 7 88 50 0 49 0 1.00 AG chr1 45767940 45767977 trf 7 5.4 7 90 3 58 2 0 24 72 0.97 TTTTGGT chr1 45768009 45768082 trf 5 15.6 5 78 18 70 1 0 38 60 1.06 TTTGG chr1 45793636 45793691 trf 12 4.6 12 86 0 65 43 0 52 3 1.18 AGGAGGAGGAAG chr1 45794186 45794242 trf 2 28.0 2 100 0 112 0 50 0 50 1.00 TC chr1 45794753 45794787 trf 12 2.8 12 90 0 50 8 2 73 14 1.19 GGGTGGGGGAGC chr1 45796373 45796446 trf 2 36.5 2 94 0 128 0 50 0 49 1.00 CT chr1 45796445 45796476 trf 2 15.5 2 100 0 62 48 51 0 0 1.00 CA chr1 45798613 45798660 trf 2 23.5 2 95 0 85 51 46 2 0 1.13 AC chr1 45807767 45807809 trf 5 8.4 5 100 0 84 0 19 0 80 0.70 TTCTT chr1 45828028 45828065 trf 1 37.0 1 100 0 74 100 0 0 0 0.00 A chr1 45830555 45830585 trf 2 15.0 2 100 0 60 50 50 0 0 1.00 CA chr1 45834826 45834884 trf 4 15.2 4 79 16 70 75 24 0 0 0.80 AAAC chr1 45836151 45836213 trf 2 31.0 2 100 0 124 50 0 0 50 1.00 TA chr1 45836881 45837113 trf 2 119.0 2 85 6 325 2 0 51 46 1.13 GT chr1 45837618 45837668 trf 1 50.0 1 100 0 100 100 0 0 0 0.00 A chr1 45838168 45838213 trf 12 3.8 12 77 16 58 33 2 13 51 1.53 TATATATATGTG chr1 45843889 45843977 trf 4 22.0 4 88 0 77 1 37 10 51 1.44 TCTC chr1 45843976 45844009 trf 2 16.5 2 100 0 66 48 51 0 0 1.00 CA chr1 45849453 45849487 trf 12 2.9 11 87 12 50 2 0 17 79 0.86 TTTGTTTTTTG chr1 45855979 45856011 trf 4 8.0 4 100 0 64 75 25 0 0 0.81 AAAC chr1 45858507 45858546 trf 10 3.9 10 89 0 60 0 7 10 82 0.86 TTTTGTTTTC chr1 45858507 45858546 trf 5 7.8 5 94 0 51 0 7 10 82 0.86 TTTTG chr1 45862844 45862882 trf 4 9.5 4 100 0 76 0 50 0 50 1.00 CTTC chr1 45862880 45862955 trf 2 37.5 2 89 0 114 0 56 0 44 0.99 CT chr1 45862956 45863003 trf 4 11.8 4 95 0 85 0 27 0 72 0.85 CTTT chr1 45866685 45866724 trf 2 19.5 2 89 0 60 5 0 43 51 1.24 TG chr1 45870631 45870697 trf 2 33.0 2 84 0 69 40 1 9 48 1.44 AT chr1 45874146 45874185 trf 6 6.8 6 85 11 55 53 12 33 0 1.39 AGAGAC chr1 45874334 45874378 trf 2 22.0 2 100 0 88 50 50 0 0 1.00 CA chr1 45879455 45879716 trf 4 65.0 4 85 8 190 63 0 35 0 1.00 GAAA chr1 45886157 45886198 trf 8 5.1 8 88 8 57 63 2 0 34 1.08 AAATATAT chr1 45887585 45887622 trf 12 3.1 12 92 0 65 35 13 8 43 1.74 TACTAGTTACAT chr1 45888606 45888633 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 45890690 45890758 trf 4 17.0 4 100 0 136 0 25 0 75 0.81 TCTT chr1 45890755 45890793 trf 4 9.5 4 100 0 76 0 50 0 50 1.00 CTTC chr1 45890790 45890838 trf 4 12.0 4 100 0 96 0 75 0 25 0.81 CCTC chr1 45892983 45893008 trf 1 25.0 1 100 0 50 0 0 0 100 0.00 T chr1 45895257 45895285 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 45897250 45897407 trf 12 13.1 12 83 0 134 49 11 37 1 1.47 AGAGAGAGAGAG chr1 45897250 45897407 trf 8 19.6 8 84 0 134 49 11 37 1 1.47 AGAGAGAG chr1 45898482 45898518 trf 5 7.2 5 96 0 54 55 0 44 0 0.99 AAAGG chr1 45898519 45898657 trf 5 27.6 5 99 0 222 35 0 64 0 0.94 AGGGA chr1 45898830 45898892 trf 5 12.4 5 92 0 106 0 77 0 22 0.77 CCTCC chr1 45901474 45901502 trf 1 28.0 1 100 0 56 100 0 0 0 0.00 A chr1 45910471 45910506 trf 2 17.5 2 93 0 61 51 45 2 0 1.16 AC chr1 45910653 45910696 trf 2 21.5 2 100 0 86 51 48 0 0 1.00 AC chr1 45913594 45913625 trf 2 15.5 2 100 0 62 0 51 0 48 1.00 CT chr1 45914458 45914496 trf 2 19.0 2 100 0 76 50 0 50 0 1.00 GA chr1 45917991 45918034 trf 5 8.0 5 94 5 59 74 25 0 0 0.82 AAAAC chr1 45917993 45918031 trf 3 13.7 3 84 15 55 73 26 0 0 0.83 AAC chr1 45923088 45923184 trf 2 50.0 2 78 8 74 44 5 4 45 1.45 AT chr1 45925560 45925590 trf 3 10.0 3 92 0 51 3 66 30 0 1.07 CGC chr1 45926855 45926904 trf 10 4.7 10 80 9 62 0 38 10 51 1.36 TCTCTCTGTC chr1 45926855 45926902 trf 8 5.9 8 89 0 76 0 38 10 51 1.37 TCTCTCTG chr1 45928579 45928607 trf 3 9.3 3 100 0 56 67 0 0 32 0.91 AAT chr1 45931240 45931267 trf 2 13.5 2 100 0 54 51 48 0 0 1.00 AC chr1 45936533 45936568 trf 2 17.5 2 100 0 70 51 0 0 48 1.00 AT chr1 45943178 45943220 trf 12 3.5 12 79 20 52 0 0 16 83 0.65 TTTTTTGTTTTG chr1 45961598 45961688 trf 5 18.6 5 78 15 82 81 18 0 0 0.70 AAAAC chr1 45962066 45962152 trf 4 21.8 4 97 2 165 0 48 0 51 1.00 CTTC chr1 45962149 45962206 trf 4 14.2 4 100 0 114 0 26 0 73 0.83 CTTT chr1 45965387 45965416 trf 5 5.8 5 100 0 58 79 20 0 0 0.74 ACAAA chr1 45966332 45966394 trf 11 5.4 11 77 14 54 4 8 4 82 0.95 TTCTTTTTTTT chr1 45971058 45971087 trf 5 5.8 5 100 0 58 82 17 0 0 0.66 AAAAC chr1 45976732 45976777 trf 1 45.0 1 88 0 54 91 4 4 0 0.52 A chr1 45977832 45977896 trf 5 11.2 6 76 15 57 79 18 0 1 0.81 CAAAAA chr1 45977844 45977895 trf 7 7.3 7 81 14 61 82 15 0 1 0.76 AAAACAA chr1 45982903 45982960 trf 4 14.2 4 100 0 114 50 0 49 0 1.00 AGGA chr1 45996288 45996334 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 AG chr1 46005715 46005753 trf 4 9.5 4 100 0 76 26 0 23 50 1.50 ATGT chr1 46007713 46007861 trf 6 24.7 6 92 0 251 0 62 2 34 1.09 CTCTCC chr1 46010810 46010853 trf 2 22.0 2 85 4 52 51 41 0 6 1.29 AC chr1 46014295 46014344 trf 1 49.0 1 79 0 53 89 0 8 2 0.55 A chr1 46014524 46014588 trf 4 16.0 4 77 18 62 78 18 0 3 0.89 CAAA chr1 46026307 46026376 trf 2 34.5 2 97 0 129 50 0 49 0 1.00 GA chr1 46037324 46037350 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 46038780 46038810 trf 4 7.8 4 92 7 53 0 0 20 80 0.72 TTTG chr1 46039986 46040033 trf 7 6.6 7 92 7 69 0 0 14 85 0.61 TTTTGTT chr1 46039989 46040034 trf 8 5.9 8 89 5 58 0 0 15 84 0.62 TTTTTTTG chr1 46039993 46040030 trf 12 3.2 12 88 11 60 0 0 18 81 0.70 TTTGTTTGTTTG chr1 46041200 46041250 trf 10 4.8 10 80 9 55 22 50 2 26 1.60 AACTCCTCCC chr1 46041625 46041660 trf 12 2.9 12 87 12 54 0 0 17 82 0.66 TTTTGTTTTTTG chr1 46052714 46052769 trf 12 4.6 12 82 8 60 72 0 27 0 0.85 AAAAAGAAGAAG chr1 46057329 46057355 trf 4 6.5 4 100 0 52 0 0 23 76 0.78 TTGT chr1 46064279 46064347 trf 3 22.7 3 94 5 120 66 1 32 0 1.01 AAG chr1 46065357 46065404 trf 4 11.8 4 100 0 94 25 25 0 48 1.51 CTAT chr1 46068436 46068464 trf 1 28.0 1 100 0 56 0 0 0 100 0.00 T chr1 46084504 46084548 trf 2 21.5 2 86 4 61 52 43 0 4 1.22 AC chr1 46084551 46084649 trf 3 33.0 3 97 2 189 0 33 0 66 0.92 TTC chr1 46086380 46086413 trf 4 8.5 4 86 6 50 0 3 24 72 0.98 TGTT chr1 46088490 46088521 trf 4 7.8 4 100 0 62 22 0 0 77 0.77 TTTA chr1 46088946 46089179 trf 7 32.7 7 79 11 197 12 21 65 1 1.33 AGGCGGG chr1 46088946 46089133 trf 7 26.4 7 81 6 207 14 21 62 1 1.38 AGGCGCG chr1 46089140 46089191 trf 7 7.0 7 91 6 75 1 17 80 0 0.81 GGCGGGG chr1 46089647 46089738 trf 2 45.5 2 95 0 164 48 1 49 1 1.15 GA chr1 46106781 46106867 trf 3 28.3 3 83 2 100 1 56 0 41 1.06 TCC chr1 46109034 46109072 trf 1 38.0 1 100 0 76 100 0 0 0 0.00 A chr1 46110472 46110522 trf 2 25.0 2 100 0 100 50 0 0 50 1.00 AT chr1 46110549 46110599 trf 2 25.0 2 95 0 91 50 48 2 0 1.12 AC chr1 46110638 46110676 trf 2 19.0 2 100 0 76 0 0 50 50 1.00 GT chr1 46112299 46112366 trf 4 16.2 4 90 6 107 26 1 0 71 0.94 TTTA chr1 46116002 46116158 trf 4 36.8 4 92 3 154 0 26 0 73 0.83 TTTC chr1 46116022 46116163 trf 5 30.6 5 91 7 141 0 23 0 76 0.78 TTTCT chr1 46119479 46119513 trf 5 6.8 5 100 0 68 0 0 17 82 0.67 TTTTG chr1 46127624 46127689 trf 6 10.8 6 89 0 85 15 0 47 36 1.46 TGATGG chr1 46132282 46132314 trf 9 3.6 9 91 0 55 43 3 9 43 1.52 TTTAAGATA chr1 46134122 46134175 trf 10 5.5 10 84 8 74 13 7 39 39 1.73 GTGTGCATGT chr1 46135132 46135158 trf 1 26.0 1 100 0 52 0 0 0 100 0.00 T chr1 46149545 46149613 trf 8 8.5 8 100 0 136 25 11 63 0 1.28 GAGGGGCA chr1 46158775 46158867 trf 2 46.0 2 84 0 103 48 41 8 1 1.41 AC chr1 46159046 46159082 trf 2 18.0 2 100 0 72 0 50 0 50 1.00 TC chr1 46165104 46165179 trf 2 38.5 2 93 5 127 49 0 50 0 1.00 AG chr1 46167046 46167098 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 46171847 46171935 trf 9 8.5 11 79 17 77 71 1 0 27 0.93 AATAAATAATA chr1 46171851 46171934 trf 6 12.3 7 82 12 79 71 1 0 27 0.94 AATAAAT chr1 46171863 46171930 trf 3 22.7 3 85 14 95 71 0 0 28 0.86 AAT chr1 46174980 46175032 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 CA chr1 46179811 46179863 trf 2 26.0 2 100 0 104 50 50 0 0 1.00 AC chr1 46183661 46183711 trf 2 25.0 2 100 0 100 0 0 50 50 1.00 GT chr1 46188719 46188757 trf 2 19.0 2 100 0 76 50 50 0 0 1.00 AC chr1 46190429 46190468 trf 2 19.5 2 100 0 78 51 48 0 0 1.00 AC chr1 46190474 46190524 trf 2 25.0 2 100 0 100 50 0 50 0 1.00 GA chr1 46190777 46190809 trf 5 6.8 5 96 3 50 87 12 0 0 0.54 AAAAC chr1 46196840 46196934 trf 2 47.5 2 93 2 163 0 0 47 52 1.00 TG chr1 46197264 46197337 trf 4 18.2 4 91 0 119 28 0 71 0 0.87 GGAG chr1 46197334 46197405 trf 4 17.8 4 97 0 133 47 1 50 0 1.09 AGGA chr1 46203288 46203386 trf 5 19.6 5 98 0 124 0 68 0 31 0.90 CTCTC chr1 46203292 46203428 trf 5 27.8 5 88 5 118 0 72 0 27 0.85 CCTCC chr1 46203350 46203428 trf 7 10.9 7 83 15 79 0 79 0 20 0.73 CCCCTCC chr1 46203456 46203506 trf 2 25.0 2 100 0 100 0 50 0 50 1.00 TC chr1 46208187 46208277 trf 8 11.0 8 76 9 56 8 2 36 52 1.45 ATGTGTGT chr1 46208222 46208280 trf 2 29.0 2 85 0 80 3 0 43 53 1.17 TG chr1 46208240 46208292 trf 10 4.7 11 84 13 63 3 3 46 46 1.39 TGTGTGTGTGA chr1 46210829 46210860 trf 4 7.8 4 100 0 62 0 0 22 77 0.77 TTTG chr1 46213132 46213166 trf 10 3.6 10 84 15 54 14 0 41 44 1.45 GTGTGTATGA chr1 46223763 46223830 trf 1 67.0 1 75 0 62 88 1 8 1 0.65 A chr1 46235172 46235225 trf 5 10.8 5 95 4 99 62 20 16 0 1.33 AACAG chr1 46241732 46241784 trf 4 13.2 4 91 4 88 75 0 25 0 0.81 AGAA chr1 46246479 46246525 trf 2 23.0 2 100 0 92 50 0 50 0 1.00 GA chr1 46248752 46248833 trf 4 19.8 4 89 5 126 50 1 24 23 1.56 AGAT chr1 46251077 46251132 trf 5 11.0 5 100 0 110 20 60 20 0 1.37 CACCG chr1 46256784 46256839 trf 1 55.0 1 81 0 65 90 9 0 0 0.44 A chr1 46260843 46260903 trf 2 30.5 2 96 3 113 48 0 51 0 1.00 GA chr1 46268152 46268178 trf 2 13.0 2 100 0 52 50 0 50 0 1.00 GA chr1 46270546 46270572 trf 4 6.5 4 100 0 52 53 0 0 46 1.00 AATT chr1 46271129 46271193 trf 3 21.7 3 78 9 51 39 1 59 0 1.07 AGG chr1 46271132 46271810 trf 6 110.8 6 72 16 146 46 0 52 0 1.07 AGGAGA chr1 46271202 46271279 trf 3 25.7 3 100 0 154 66 0 33 0 0.92 GAA chr1 46271277 46271347 trf 3 23.3 3 97 0 131 34 0 65 0 0.93 GAG chr1 46271404 46271483 trf 10 8.6 10 73 26 77 41 0 58 0 0.98 GGAAGGGGAA chr1 46271595 46271711 trf 8 15.2 8 69 16 52 52 0 47 0 1.00 AGGAGAAG chr1 46271618 46271795 trf 3 62.7 3 68 17 103 59 0 40 0 0.97 AGA chr1 46272729 46272775 trf 2 23.5 2 95 4 85 50 0 50 0 1.00 GA chr1 46274915 46275021 trf 3 35.3 3 94 0 185 36 0 63 0 0.95 AGG chr1 46275019 46275086 trf 3 22.3 3 100 0 134 65 0 34 0 0.93 GAA chr1 46280931 46280964 trf 12 2.6 13 90 9 59 0 6 24 69 1.10 TTGCTTTGTTTGT chr1 46284449 46284479 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 46289811 46289848 trf 2 18.5 2 100 0 74 0 0 48 51 1.00 TG chr1 46293089 46293303 trf 8 26.0 8 72 19 124 59 0 38 1 1.10 AAAGGGAA chr1 46293095 46293235 trf 9 15.4 9 72 12 54 57 0 40 1 1.12 AAAGGGGGA chr1 46293111 46293635 trf 9 55.2 9 70 20 126 57 0 41 1 1.09 AAAAGGGAA chr1 46293111 46293226 trf 10 12.2 10 69 15 59 61 0 35 1 1.12 AAAAGGGAAA chr1 46293256 46293465 trf 6 35.3 6 72 17 161 53 0 45 0 1.06 AAAGGG chr1 46293447 46293516 trf 8 8.9 8 84 9 81 50 0 49 0 1.00 GGAAAAGG chr1 46293467 46293534 trf 8 8.0 8 83 9 71 58 0 41 0 0.98 GGGAAAAA chr1 46293472 46293742 trf 10 26.9 10 78 14 132 60 0 38 0 1.02 AAGGGAAAAG chr1 46293668 46293740 trf 5 14.4 5 98 0 135 62 0 37 0 0.95 AAGAG chr1 46312828 46312886 trf 5 11.8 5 94 3 100 82 0 17 0 0.66 GAAAA chr1 46328033 46328076 trf 2 21.5 2 100 0 86 0 0 48 51 1.00 TG chr1 46328700 46328820 trf 5 24.0 5 98 0 204 0 23 0 76 0.78 CTTTT chr1 46338230 46338284 trf 7 7.7 7 100 0 108 0 0 12 87 0.56 TTTTTGT chr1 46339412 46339456 trf 2 22.0 2 95 0 79 50 47 2 0 1.13 AC chr1 46342269 46342323 trf 1 54.0 1 84 0 72 0 0 7 92 0.38 T chr1 46353418 46353486 trf 2 33.0 2 80 11 75 2 5 45 45 1.42 GT chr1 46356192 46356268 trf 4 19.0 4 97 0 143 25 26 0 48 1.51 ATCT chr1 46356808 46356849 trf 2 20.5 2 100 0 82 0 0 48 51 1.00 TG chr1 46358731 46358792 trf 12 4.8 12 78 11 59 55 13 29 1 1.47 ACAGAGAGACAG chr1 46364762 46364847 trf 3 31.0 3 77 21 80 0 74 0 25 0.82 CTC chr1 46364762 46364845 trf 5 15.8 5 90 6 87 0 74 0 25 0.82 CTCCC chr1 46364845 46364901 trf 3 18.7 3 88 0 85 0 39 0 60 0.97 TCT chr1 46364848 46364904 trf 9 6.2 9 97 0 94 0 41 0 58 0.98 TCTTCTTCC chr1 46365026 46365068 trf 4 10.5 4 94 0 75 26 0 21 52 1.47 TATG chr1 46366737 46366773 trf 5 6.8 5 87 12 54 0 0 22 77 0.76 TTTTG chr1 46370062 46370125 trf 2 31.5 2 100 0 126 0 49 0 50 1.00 TC chr1 46374605 46374694 trf 4 22.2 4 97 0 142 0 55 0 44 0.99 CTCT chr1 46376454 46376518 trf 2 32.0 2 100 0 128 0 50 0 50 1.00 TC chr1 46377168 46377211 trf 10 4.3 10 87 0 68 25 11 41 20 1.86 GGTAAAGGCT chr1 46391058 46391131 trf 2 36.0 2 91 2 119 47 47 0 4 1.21 CA chr1 46394228 46394266 trf 4 9.2 4 88 5 58 76 0 23 0 0.79 AAAG chr1 46400471 46400525 trf 5 10.2 5 79 18 56 0 1 18 79 0.82 TGTTT chr1 46404511 46404556 trf 2 22.5 2 100 0 90 48 51 0 0 1.00 CA chr1 46412057 46412094 trf 12 3.1 12 92 0 56 37 0 10 51 1.37 TGTGTATATATA chr1 46412061 46412097 trf 2 18.0 2 94 0 54 44 0 5 50 1.25 TA chr1 46412097 46412252 trf 6 25.8 6 99 0 283 35 0 64 0 0.94 GAGAGG chr1 46417017 46417088 trf 3 24.3 3 94 5 128 67 0 0 32 0.91 ATA chr1 46420248 46420314 trf 4 16.2 4 77 14 64 56 0 43 0 0.99 GAAG chr1 46427118 46427148 trf 1 30.0 1 100 0 60 0 0 0 100 0.00 T chr1 46432053 46432109 trf 11 4.8 11 85 10 76 85 14 0 0 0.59 AAAAAAAAACA chr1 46434727 46434752 trf 7 3.6 7 100 0 50 64 12 12 12 1.51 AAAATGC chr1 46442970 46443009 trf 1 39.0 1 100 0 78 0 0 0 100 0.00 T chr1 46450868 46450897 trf 2 14.5 2 100 0 58 51 0 0 48 1.00 AT chr1 46455644 46455687 trf 2 23.0 2 81 13 56 44 0 0 55 0.99 TA chr1 46456157 46456236 trf 3 26.7 3 93 2 133 0 35 1 63 1.03 CTT chr1 46458053 46458083 trf 4 7.5 4 92 0 51 26 0 23 50 1.50 TTGA chr1 46459307 46459332 trf 6 4.2 6 100 0 50 52 16 0 32 1.44 ACATAT chr1 46462890 46462919 trf 4 7.2 4 100 0 58 51 24 24 0 1.48 AGAC chr1 46462925 46463009 trf 3 28.0 3 85 0 87 39 0 60 0 0.97 AGG chr1 46462975 46463044 trf 6 11.3 6 80 14 61 24 0 72 2 0.98 GAGGGG chr1 46463383 46464068 trf 8 84.2 8 72 21 342 36 0 61 1 1.10 AGGGAGAG chr1 46463386 46463461 trf 2 41.5 2 77 19 85 48 0 52 0 1.00 GA chr1 46464061 46464146 trf 10 7.9 11 86 13 92 56 1 41 1 1.14 GAGAGAGAGAA chr1 46464062 46464147 trf 7 11.9 7 72 23 54 56 1 41 1 1.14 AGAGAGA chr1 46464064 46464133 trf 5 14.0 5 91 8 115 59 0 39 1 1.06 AGAGA chr1 46480506 46480570 trf 3 21.3 3 100 0 128 0 65 0 34 0.93 TCC chr1 46480568 46480672 trf 3 37.7 3 80 19 129 0 32 0 66 0.98 CTT chr1 46482348 46482384 trf 2 18.0 2 100 0 72 50 50 0 0 1.00 AC chr1 46483261 46483306 trf 2 22.5 2 95 0 81 51 46 0 2 1.13 AC chr1 46483312 46483357 trf 2 22.5 2 100 0 90 0 0 51 48 1.00 GT chr1 46484313 46484378 trf 2 32.5 2 96 0 121 0 49 0 50 1.00 CT chr1 46492057 46492212 trf 4 38.5 4 91 6 206 0 30 0 69 0.89 CTTT chr1 46492133 46492166 trf 2 16.5 2 100 0 66 0 48 0 51 1.00 TC chr1 46492253 46492292 trf 4 9.8 4 100 0 78 23 0 0 76 0.78 TTTA chr1 46492335 46492378 trf 4 10.8 4 100 0 86 23 0 0 76 0.78 TTTA chr1 46492421 46492462 trf 4 10.2 4 100 0 82 24 0 0 75 0.80 TTTA chr1 46498648 46498682 trf 1 34.0 1 100 0 68 0 0 0 100 0.00 T chr1 46503025 46503122 trf 3 32.0 3 97 2 185 67 0 32 0 0.91 AAG chr1 46520043 46520093 trf 3 16.7 3 91 0 73 32 0 34 34 1.58 ATG chr1 46525024 46525056 trf 9 3.6 9 91 0 55 43 3 9 43 1.52 TTTAAGATA chr1 46527055 46527088 trf 2 16.5 2 100 0 66 0 0 48 51 1.00 TG chr1 46533400 46533451 trf 8 6.6 8 80 8 61 7 3 41 47 1.51 TGTGTATG chr1 46533400 46533454 trf 2 27.0 2 76 0 54 7 3 42 46 1.49 TG chr1 46536309 46536480 trf 8 21.1 8 92 4 146 27 11 60 0 1.36 GAGGCAGA chr1 46542870 46542907 trf 6 5.8 6 96 3 56 86 13 0 0 0.57 AAAAAC chr1 46542870 46542909 trf 7 5.9 7 93 6 64 84 15 0 0 0.62 AAAAACA chr1 46544886 46544959 trf 10 7.2 10 71 23 55 43 1 52 2 1.24 AGGAGAGGAG chr1 46544932 46544